WO2007033587A1 - A method for isolating a bi-directional gene promotor and the use thereof - Google Patents
A method for isolating a bi-directional gene promotor and the use thereof Download PDFInfo
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- WO2007033587A1 WO2007033587A1 PCT/CN2006/002448 CN2006002448W WO2007033587A1 WO 2007033587 A1 WO2007033587 A1 WO 2007033587A1 CN 2006002448 W CN2006002448 W CN 2006002448W WO 2007033587 A1 WO2007033587 A1 WO 2007033587A1
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- the invention belongs to the field of plant genetic engineering.
- it relates to an isolated bidirectional gene promoter, a recombinant nucleic acid sequence comprising the promoter, a construct and an expression system, and the use thereof to drive expression of a functional gene in a plant. It also relates to a method of isolating a two-way gene promoter.
- Plants are affected by a large number of different types of microorganisms during their growth. Therefore, the diseases caused by these microorganisms have always been one of the main causes of crop failure.
- plants have also evolved a variety of defense mechanisms against the invasion of surrounding pathogenic microorganisms, so that they can survive and multiply in competition with various microorganisms.
- plant resistance to pathogens can be divided into two categories: constitutive passive defense and induced active defense, in which induced active defense plays a leading role in plant resistance to pathogens.
- the so-called active defense refers to a series of defense responses that plants can quickly identify and activate when they are infected by pathogens.
- Hypersensitive response is a typical type of active defense response, which is characterized by: Host plants often rapidly develop local cell death around the pathogen infection site. For living nutrients and some non-living nutrient pathogens, this local cell death of the plant can effectively limit the spread of the pathogen into the surrounding cells, which is manifested as disease resistance.
- the gene-to-gene relationship between the host cultivar (or strain) and the pathogen race (or pathogenic type), that is, the resistance of the cultivar is the resistance gene (R gene) contained therein.
- R gene resistance gene
- ⁇ vr gene avirulence gene
- the host plant can not effectively identify and change the pathogen that changes or mutates, and initiates a defense response, which ultimately manifests as a disease. .
- the cultivation and utilization of disease-resistant varieties has long been the main effective means of controlling plant diseases.
- long-term large-scale cultivation of a single resistance gene will cause high selection pressure on the pathogen population, resulting in the emergence of new dominant toxic races, which will cause plants to "lost" disease resistance.
- resistant varieties are mainly obtained through sexual hybridization, usually through hybridization, backcrossing and a series of offspring screening processes, with a long cycle, and sometimes the breeding rate of resistant varieties can not keep up with the emergence of new dominant species.
- Speed Bact J. Corneslissen, Plant Physiol., 1993, 101:700-712
- a constitutive promoter such as the commonly used CaMV 35S promoter
- genes such as defense genes
- a strategy has its own flaws that are difficult to overcome.
- the allergic reaction of plants is caused by the death of their own local cells to kill or limit the expansion of pathogens to express resistance.
- the genes expressed in this "sacrificial partial preservation" strategy are often inductively expressed. If these genes (such as the HR gene) are expressed constitutively, they are often destructive to plants (De Wit, 1992, Annu. Rev. Phytopathol., 30: 391-418).
- the ideal strategy for cultivating broad-spectrum or long-lasting disease-resistant crops through transgenic pathways is to use pathogen-inducible inducible gene promoters to drive non-specific inducible expression of key genes responsible for disease resistance, allowing plants to be infected only by pathogens.
- Xie MT et al. proposed a strategy for artificially constructing a bidirectional gene promoter to drive expression of two genes, and proved that: a unidirectional promoter is fused in the opposite direction to a basic promoter region (TATA box region), which has a bidirectional drive.
- TATA box region basic promoter region
- the inventors have established long-term exploration and extensive research to establish a cloned cDNA by negative subtractive screening-reverse Northern confirmation, and then isolate candidate bidirectional promoter regions according to bioinformatics analysis, and then prove by transgenic pathway.
- a bidirectional gene promoter with bidirectional driving gene expression was successfully obtained, and its sequence and function were deeply studied. It was found that the promoter can drive endogenous or exogenous genes in transgenic monocots such as rice leaves. Inducible expression of pathogens, constitutive expression in the roots, and also driving of constitutive expression of endogenous or exogenous genes in the roots and leaves of transgenic dicots such as Arabidopsis thaliana.
- the object of the present invention is firstly to provide a bidirectional gene promoter having the sequence set forth in SEQ ID NO: 1 or SEQ ID NO: 2 or a variant sequence thereof, which is directed against SEQ ID O: a sequence obtained by deleting, adding, replacing or modifying the bases 162 to 932 in the sequence shown, or the bases from position 217 to position 987 in the sequence shown in SEQ ID NO: 2.
- SEQ ID NO: 1 or SEQ ID NO: 2 or a variant sequence thereof which is directed against SEQ ID O: a sequence obtained by deleting, adding, replacing or modifying the bases 162 to 932 in the sequence shown, or the bases from position 217 to position 987 in the sequence shown in SEQ ID NO: 2.
- the bidirectional gene promoter sequence is set forth in SEQ ID NO: K 2, 3, 4, 14 or 15. It is also an object of the present invention to provide a functional equivalent of the bidirectional gene promoter having the SEQ ID NO:
- the present invention also provides a promoter having the sequence shown in any one of SEQ ID NOS: 7-13.
- the present invention also provides an enhancer characterized in that the activity of the promoter is enhanced after fusion to the promoter 3, which has positions 49 to 176 in SEQ ID NO: 5 and SEQ ID NO: Any of the sequences shown in bits 45 through 497.
- the present invention also provides a key cis element having the sequence shown in any one of SEQ ID NOS: 16, 17.
- a recombinant nucleic acid sequence comprising the above promoter.
- the recombinant nucleic acid sequence comprises at least one functional endogenous or exogenous gene.
- the term "functional endogenous or exogenous gene” may be a disease resistance gene, a defense gene and its related genes isolated from rice or other plants, or a gene of a key enzyme or protein in a defense process, Or the phytoalexin synthase gene having direct or indirect bactericidal action, or may be an antisense RNA isolated from rice blast fungus or a gene closely related to rice blast fungus, or may be isolated from animals or microorganisms.
- Genes of disease-resistant active substances or genes for synthesizing their enzymes, and beneficial genes such as drought-resistant, cold-resistant, salt-resistant or high-temperature resistance genes.
- a recombinant construct comprising the recombinant nucleic acid sequence described above is provided.
- an expression system comprising the recombinant construct described above is provided.
- a promoter as described above, a recombinant nucleic acid sequence comprising the promoter, a construct or an expression system for driving expression of an endogenous or exogenous gene in a plant.
- the plant is a monocot or a dicot.
- the monocot is preferably rice, and the dicot is preferably Arabidopsis.
- the present invention also provides a method for isolating a bidirectional gene promoter comprising cDNAs of a plurality of genes isolated and expressed from an organism, such as a plant, and analyzing the cDNA on the chromosome by bioinformatics means known in the art.
- DNA1 a bidirectional gene promoter
- transgenic means to confirm the organ and tissue specificity of its expression and its response to abiotic stresses such as drought, cold, salinity, high temperature and other abiotic stresses and pests.
- abiotic stresses such as drought, cold, salinity, high temperature and other abiotic stresses and pests.
- promoters having a two-way driving gene expression function or cloning from other plants having a bidirectional driving gene expression function are isolated from organisms whose whole genome sequence has been determined, such as rice, Arabidopsis, and the like. Such promoters drive the expression of genes linked to their sides to have different tissue or organ specificities, either inductively expressed, specifically expressed in tissues, organs or developmental stages, or constitutively expressed.
- the method of the present invention comprises: (1) preparing a rice cDNA library infected by a pathogenic bacteria such as Magnaporthe oryza, and plating the membrane; (2) hybridizing the mRNA of healthy rice leaves as a probe, and selecting a clone that is not hybridized.
- a pathogenic bacteria such as Magnaporthe oryza
- the present invention uses rice as a material to clone a promoter having the ability to drive two genes of interest in both directions.
- the promoter can induce the expression of two genes of interest in the rice leaves infected by Magnaporthe oryzae (Fig. 8, 14), and can also express two target genes in the rice roots specifically (Fig. 15).
- the promoter also constitutively expresses two genes of interest in the roots and leaves of transgenic Arabidopsis thaliana ( Figures 16, 17, 18).
- sequence of the bidirectional promoter is SEQ ID NO: 1 and SEQ ID NO: 2, and the above two sequences are reverse complementary sequences, that is, sequences of two complementary single strands of the same DNA fragment, for convenience of description, They are named pSCI2 and pSCI3, respectively.
- the TATA box and the transcription start site (TSS) of pSCI2 are located at 1095 bp and 1125 bp of SEQ ID NO: 1, respectively, and the TATA box and TSS of pSCI3 are located at 1096 bp and 1026 bp of SEQ ID NO: 2, respectively;
- the transcribed DNA sequence (including endogenous and exogenous DNA sequences) can be placed at or ligated to the 3' end of pSCI3 to construct a binary expression vector, which can be transgenic after introduction into rice or Arabidopsis through appropriate routes.
- pSCI2 or/and pSCB in rice and Arabidopsis can drive transcription of this transcribable DNA sequence.
- the present invention also provides introns belonging to two different protease/chymotrypsin inhibitors (0 ⁇ «'2 and (3 ⁇ 43 ⁇ 4 ⁇ ) genes of rice at the 3' end of pSCI2 and pSCI3, respectively, which are respectively contained in SEQ ID NO: 5 and SEQ ID NO: 6.
- the intron sequence of the OsSci2 gene from 49 bp to 176 bp in SEQ ID NO: 5 is from 45 bp to 497 bp in SEQ ID NO: 6.
- SEQ ID NO: 5 is placed at the 3' end of SEQ ID NO: 1 and fused thereto
- SEQ ID NO: 6 is placed at the 3' end of SEQ ID NO: 2 and fused thereto, respectively.
- the resulting two-stage DNA sequence: ⁇ C/2+/ and ⁇ C/3+J which have the nucleotide sequences shown in SEQ ID NO: 3 and SEQ ID NO: 4, respectively, are characterized by: pSCI2+ I has stronger activity in inducing expression of the target gene than pSCI2 (Fig. 11); ⁇ C 3+/ is more potent in inducing expression of the target gene (Fig. 12).
- the intron can also be combined with other promoters. Fusion, and have Enhancement of target gene expression.
- the invention also provides several variant variants obtained by base deletion of pSCI2 and pSCI3.
- the derived variants pSCI2-l, pSCI2-2, pSCI2-3 and pSCI2-4 were obtained by PCR amplification from the 5'-end deletion of pSCU, respectively.
- the derived variant pSCI3-l was obtained from the 5'-end deletion of pSCI3. , pSCI3-2 and pSCI3-3.
- the PCR amplification primers are shown in Figure 7.
- pSCU-1, pSCI2-2, pSCI2-3 and pSCI2-4 have the nucleotide sequences from positions 69, 226, 403 and 616 to position 1152 in the sequence of SEQ ID NO: 1, respectively, the sequences of which are respectively SEQ ID NO: 7, 8, 9, 10; 7SCZW, and ? have the nucleotide sequences from positions 93, 214 and 400 to position 1152 in the sequence of SEQ ID NO: 2, respectively, the sequences of which are respectively SEQ ID NO : 11, 12, 13 are shown. It is characterized in that: these derived variants have different degrees of promoter activity, and any of the derived variants can be selected to drive different degrees of expression of the target gene according to the needs of use (Fig. 9 and Fig. 10). It will be understood by one of ordinary skill in the art that the DNA sequence fused to the TATA box at the 5' end of SEQ ID NO: 7-13 also functions as a bidirectional gene promoter of the present invention.
- the invention also provides two variant variants pSCISP2 and pSCISP3 obtained by restriction endonuclease digestion of pSCI2 and pSCI3.
- pSCISP2 is a self-ligated fragment of the pSCU by restriction endonuclease and has the nucleotide sequence of SEQ ID NO: 14 and is characterized by the deletion of nucleotides 162 to 932 of SEQ ID NO: 1.
- variant variants are also obtainable by PCR. They all have the ability to bidirectionally drive the constitutive expression of the gene of interest in rice leaves, and pathogen infection enhances its expression activity (Fig. 13).
- the promoter of the above-described rice two-way gene promoter and its derivative variants is ligated to an endogenous or exogenous transmissible gene, and the promoter or its derivative is determined by detecting the expression of the gene.
- Variant promoter activity For example, the promoter activity of the above-described rice bidirectional gene promoter and its derived variant can be confirmed by the expression of Gt/S by fitting the reporter gene Gt/S downstream of the promoter.
- a preferred embodiment is the sophisticated method established by Jerfferson et al. (Jerfferson, EMBO J., 1987, 6:3901 ⁇ 3907).
- the expression vector constructed by the DNA sequence or the binary expression vector and the cell line obtained by the transformation, the recombinant microorganism, and the transgenic plant are all covered by the patent. That is, the vector constructed by the above-described promoter-active DNA sequence fragment or by using the optional DNA sequence fragment is used to construct a vector for transforming a plant and its cell line or microorganism.
- the recombinant DNA technology involved in the present invention can be implemented by one of ordinary skill in the art.
- the bidirectional promoter and its derived variants provided by the present invention can be ligated to any DNA fragment of interest to construct a related vector, expression vector or binary expression vector, and the DNA fragment function can be determined in rice or other plants.
- Any DNA fragment is a reporter gene or a Luciferase gene in the present invention, but a gene to be expressed which is preferred in practical use may be a gene that directly inhibits, interferes with or destroys the survival of a pathogen, a disease resistance gene, a defense gene, a signaling gene, and a gene.
- a heterologous gene (such as a non-toxic gene, antisense RNA, etc.) which is expressed in plants such as rice and which can effectively control diseases, and may also be a gene having other uses.
- the bidirectional promoter provided by the invention can be used for the cultivation of disease resistant rice.
- the bidirectional promoter provided by the present invention is ligated to two genes which play a key role in disease resistance and constructs a binary expression vector, introduced into Agrobacterium tumefaciens, and transformed into rice by Agrobacterium tumefaciens to obtain disease resistance.
- Or disease-resistant genetically modified rice A preferred embodiment of the disease resistant rice of the present invention is to cultivate rice resistant to rice blast, and another preferred embodiment is rice resistant to root diseases.
- the application of the bidirectional promoter provided by the present invention is not limited to rice, but can be applied to other monocotyledons or dicotyledons.
- the invention provides a plant cell comprising a promoter and a functional endogenous or exogenous gene as described above in the invention.
- the invention provides a method of obtaining a transgenic plant comprising transforming an expression system of the invention as described above into a plant.
- the reverse sequence of the same gene is ligated at both ends thereof to construct an RNA interference vector and transferred into a plant, and the function and utilization of the related gene can be carried out.
- the "cloning" of the DNA fragment in the present invention means a promoter sequence which is isolated from the natural rice genome in nature and can be directly used alone without any change. It will be understood by those skilled in the art that, according to the sequence of the present invention, a pair of upstream and downstream primers can be designed, which can be easily obtained again by conventional PCR techniques, or can be screened from a rice genomic library by using a labeled probe, and even a classic can be used. Synthetic or chemical synthesis is obtained, which can be done by one of ordinary skill in the art.
- the present invention also provides a key cis-acting element that functions in the pSCI2 and pSCI3 promoters, characterized by having the sequences set forth in SEQ ID NO: 16 and SEQ ID NO: 17.
- these cis-acting effects Deletion of the elements results in a significant decrease in expression of the reporter gene driven by the pSCI3 promoter, ie, they have an enhanced effect on the expression of the reporter gene driven by the promoter.
- These cis-acting elements can also be linked to other promoters to enhance expression of the gene of interest.
- the method of introducing a disease-resistant binary expression vector into rice in the present invention is simple in the art and can be accomplished by those skilled in the art.
- the detection of the activity of the above-mentioned promoter or its derivative variants and the use of the promoter for targeted disease-resistant molecular manipulation are inevitably carried out in plant systems, a preferred embodiment being Agrobacterium-mediated Methods (Hid et al, Plant 1.1994, 6:271-282) introduced it into rice; users can also flexibly choose the following transformation methods according to their proficiency: protoplast fusion method, gene gun bombardment method, electric excitation method, PEG method, leaf disc method, etc.
- the promoter according to the invention is active, after transformation of the transgenic gene, during tissue culture from rice resistant callus to rooting and moving into the natural environment (such as the field), the transformed tissue or individual has similar constitutive expression.
- Activity which is caused by the difference in the tissue culture medium during the stimulation of the active ingredient or tissue culture during the tissue culture (such as similar damage), which is basically lost after the transplanted into the field.
- the molecular manipulation tool enzymes designed in the present invention are TaKaRa products unless otherwise specified.
- Figure 1 Screening by negative subtraction - Reverse Northern confirmation of cloned rice blast fungus-inducible cDNA. Caption: In the circular part of the above figure, the rice cDNA library was randomly plated and transfected, and the mRNA of healthy rice leaves was used as a probe to hybridize; the clones that were not hybridized (indicated by open circles in the above figure) were selected as candidate induction. Sex cDNA clone. The following figure shows that the candidate inducible cDNA clones were arrayed on two nylon membranes, respectively, and the reversed Northern confirmation was carried out by hybridizing the mRNA of healthy rice leaves and inoculated rice blasts, respectively.
- the left side of the figure was inoculated with rice blast fungus leaves.
- the mRNA (R) probe, right, is the healthy leaf mRNA (H) probe.
- the hybridization signal black dot in the figure was determined to be an inducible cDNA clone.
- Figure 2 Reverse Northern real confirmation of rice blast-induced rice cDNA clones. Caption: After the candidate cDNA was amplified by PCR, the same array was arrayed on two nylon membranes, and hybridized with rice healthy leaf mRNA (left) and rice blast fungus inoculated rice leaf mRNA (right) as probes. Most positive clones have a hybridization signal only on the right side of the membrane, which is an inducible clone.
- FIG. 3 The top panel shows the rice subtilisin/trypsin inhibitor gene ay& and staining The structure of the body. Caption: The structure is indicated above, the thick solid arrow in the right direction indicates the cDNA transcribed by the Oy&i2 gene and its orientation, the left solid arrow indicates the cDNA transcribed from the ⁇ 3 ⁇ 3 3 gene and its orientation; the open box indicates the intron; ATG For translation initiation codon; TSS is the transcription start site. Black lines indicate DNA. The two genes are located on the complementary sequence of the DNA; the lower panel shows the Southern hybridization map of the rice variety Aizhixu. The left and right probes are the coding regions of OsSci2 and OsSci3, respectively. Lanes M, 1, and 2 are DNA molecular weight standards, Hind III digestion genome and EcdK digestion genome.
- FIG. 1 Northern analysis of the dynamic expression of OsSci2 and OsSci3 genes after infection by Magnaporthe oryzae. Illustration: 0, 8, 24, 48, 72 are the inoculation time, the unit is hour (h), the inoculation of rice blast fungus is non-affinity race 131 and affinity race 007, ribosomal RNA is within the sample volume Standard.
- Figure 5 is a schematic representation of the construction of a two-way vector of the rice blast-induced rice bidirectional 3 ⁇ 4 promoter region and its derived variants and reporter gene conjugation.
- the above figure is a schematic diagram of the fusion of the promoter and its derivative variants with the reporter gene GUS.
- the solid line indicates the promoter region, the solid arrow of the pentagon indicates the GUS reporter gene, the same below; the following figure shows the removal of CaMV35S Promoter pCAMBIA1301 vector, the restriction enzyme site marked on the vector £c.
- Ncol is the junction site of the promoter fragment.
- Cc MV 35S is the 35S promoter of cauliflower mosaic virus.
- FIG. 1 Schematic diagram of the binary expression vector PCAMBIA1301 of the rice blast fungus-inducible rice bidirectional gene promoter and the gene of interest (gene I and gene ⁇ ).
- FIG. 7 Genetically modified mutants of the rice blast-induced rice bidirectional gene promoter region and their degenerate deletions from the 5' end. Caption: The primer pair name corresponds to the promoter or its variant name, underlined as an increased restriction site, the upstream primer increases the site by EcoRI, and the downstream primer increases No I.
- Figure 8 Comparison of the activity of the reporter gene found in the transgenic rice leaves inoculated with Magnaporthe oryzae and the reporter gene driven by the O ⁇ S promoter. Schematic illustration: Left is a schematic representation of pSCI2 and / and Gf/ gene linkage, the number indicates a transcription start site of +1. On the right is the GUS expression activity, Inoculation is the sample 36 hours after the inoculation of Magnaporthe oryzae, Mock is the sample 36 hours after the water treatment, and Untreated is the sample without any treatment. The activity of the reporter gene Gt/S driven by pSCI2 and pSCI3 was 28 and 12-fold, respectively, of the Ca ⁇ S-driven reporter gene Gi/S expression.
- Figure 9 Comparison of the activity of pSCI2 and its derivative variant driving gene expression in transgenic rice leaves inoculated with Magnaporthe oryzae.
- Activity, Inoculation is a sample 36 hours after inoculation of Magnaporthe oryzae
- Mock is a sample 36 hours after water treatment. Untreated is a sample that has not been treated at all.
- Figure 10 Comparison of the activity of ⁇ C? and its derivative variants driving gene expression in leaves of transgenic rice inoculated with Magnaporthe oryzae. Schematic illustration: Left is a schematic diagram of the linkage between the derivative variant and the Gf/S gene. The figure indicates that the transcription start site is +1, ⁇ is an empty vector without a promoter; the right is the corresponding GUS expression activity. Inoculation was a sample 36 hours after inoculation with Magnaporthe oryzae, Mock was a sample 36 hours after water treatment, and Untreated was a sample without any treatment.
- FIG. 11 Comparison of the intensity of Gt/S gene expression in transgenic rice leaves after inoculation with Magnaporthe oryzae. Schematic description: Left is and; schematic diagram linked to G?7S gene, the figure indicates that the transcription start site is +1, WP is an empty vector without promoter; right is corresponding to GUS expression activity, Inoculation is rice For the 36 hours after the inoculum treatment, Mock was the sample 36 hours after the water treatment, and Untreated was the sample without any treatment.
- FIG. 12 Comparison of the intensity of ASCZ? and driven Gt/S gene expression in transgenic rice leaves after inoculation with Magnaporthe oryzae. Caption: The left is a schematic diagram of the connection between SCZ? and ;C/3+/ and the Gf/S gene. The numbers in the figure indicate that the transcription start site is +1, and WP is an empty vector without a promoter; Corresponding to GUS expression activity, Inoculation was a sample 36 hours after inoculation of Magnaporthe oryzae, Mock was a sample 36 hours after water treatment, and Untreated was a sample without any treatment.
- FIG. 1 Analysis of GUS expression activity of pSCISP2 and pSCISP3-driven Gt/S gene-expressing transgenic rice leaves after inoculation with Magnaporthe oryzae. Caption: The left is a schematic representation of the GUS gene expression vector driven by pSClSJP2 and pSCISP3. The figure indicates that the transcription start site is +1, which is an empty vector without a promoter; the right is the corresponding GUS expression activity, and the Inoculation is rice. The sample was 36 hours after the inoculum treatment, and Mock was a sample 36 hours after the water treatment, and Untreated was a sample without any treatment.
- FIG. 14 Tissue staining of the two-way promoter pSC/2, and its derived variant-driven Gf/S gene, induced by Magnaporthe oryzae in the leaves of transgenic rice.
- 1 to 16 are: pSCI2, P SCI2-l, pSCI2-2, pSCI2-3, pSCI2-4, pSCI2SP, pSCU+I, WP, pSCI3, pSCI3-l, pSCJ3-2, pSCIS-3 , CaMV35S, pSCI3SP, SC/J+Z and / 3 ⁇ 4SC 2 (not vaccinated).
- the arrow in the figure shows one of the stained (blue) sites, and the uninoculated and inoculated T T plants have no blue color, indicating that the bidirectional promoter and its derived variants are inducible expression of Magnaporthe oryzae in rice leaves.
- FIG. 15 Two-way promoter; Tissue staining of the expression of the SC/pSCB region-driven Gi/S gene in the roots of transgenic rice.
- pSCI2 pSCB transgenic water
- the rice plants had GUS expression at the root tip, lateral root germination point and lateral root (indicated by the arrow in the figure, blue).
- the WP transgenic plants showed no coloration at the above sites, indicating that the two-way promoter was constitutively expressed in rice roots. .
- FIG. l6 GUS expression activity analysis of transgenic Arabidopsis roots expressed by pSCI2 and pSCI3 driven Gi/S gene. Schematic description: Left is a schematic diagram of the driven G3 ⁇ 4S gene expression vector. The figure indicates that the transcription start site is +1, which is an empty vector without a promoter; the right is the corresponding GUS expression activity.
- FIG. 1 Figure Y GUS expression activity analysis of transgenic Arabidopsis leaves expressed by pSCU and pSCI3-driven Gt/S gene expression. Schematic description: Left is a schematic diagram of the gene expression vector driven by SC/3. The figure indicates that the transcription start site is +1, which is an empty vector without promoter; the right is the corresponding GUS expression activity.
- FIG. 18 Tissue staining of the two-way gene promoter pSC/2, pSC73 region-driven gene in transgenic Arabidopsis thaliana.
- the pSCI2, pSCB transgenic rice Arabidopsis thaliana had GUS expression in the leaves and roots (arrows in the figure, blue), and the transgenic plants showed no coloration, indicating that the bidirectional promoter was found in the roots and leaves of Arabidopsis thaliana. For constitutive expression.
- Specific implementation Specific implementation
- the present invention firstly selects inducibility from a cDNA library of rice blast fungus infecting rice leaves by a negative subtractive screening-reverse Northern confirmation method.
- the cDNA clone was 1642.
- the specific implementation is as follows: planting rice variety Aizhixu Oryzc sativa japonica cv.
- the cDNA library of the rice leaf infected by Magnaporthe oryzae was plated into a monoclonal plate and imprinted on a nylon membrane.
- the construction of the cDNA library was carried out according to the instructions of the ⁇ ZAP expressTM kit provided by Stratagene. The sample used was inoculated with rice cultivar P131. Aichi Zhi 0, 4, 8, 12, 24, 36, N2006/002448
- Example 1 The 1790 cDNA sequences in Example 1 subjected to negative subtractive screening-reverse Northern confirmation were compared with the rice genome database (http://ricegaas.dna.affrc.go.jp), and it was found that 1642 of them were found.
- the sequence is derived from rice.
- cDNAs derived from rice were compared with each other, BLAST query and genomic database analysis, and they were found to belong to 1075 independent rice genes, respectively.
- Northern blot analysis was used to analyze the expression characteristics and time dynamics of OsSci2 and OsSciS induced by Magnaporthe oryzae.
- the specific implementation method is as follows: Planting rice variety Aizhixu, when 4-5 leaves are extracted, part of the rice leaves are inoculated with the rice cultivar affinity 007 (Peng, YL and Shishiyama, Can. J. Bot. 1988, 66). : 730-735 ) , Another part of the living body was inoculated with the rice cultivar P131, and the leaves were taken at 0, 8, 24, 48, and 72 hours after inoculation. Immediately after storage, the liquid nitrogen was frozen and the total RNA was extracted.
- the two genes are located on the complementary strand of the same DNA fragment and distributed in a head-to-head manner.
- the two cDNAs are 1152 bp apart, and the 5' untranslated regions of both genes contain one. Intron.
- a specific primer pair pSCI2+I SEQ ID NO-.18, 19
- pSCI3+I SEQ ID NO: 25, 26
- the PCR reaction conditions were: 94 4 minutes; 94 °C 30 seconds, 58 ⁇ 30 seconds, 72 2 minutes, 30 cycles; 72 10 minutes.
- the amplified fragment was cloned into a PMD-18T vector (manufactured by TaKaRa Co., Ltd.) and sequenced, and a nucleotide sequence of the DNA fragment shown in SEQ ID NO: 0.3 and SEQ ID N0.4 of the Sequence Listing was obtained.
- primer pairs pSCI2 SEQ ID NO: 18, 20
- pSCI3 SEQ ID O: 25, 27
- the PCR reaction conditions were: 94 ° C 4 Minutes; 94 ⁇ 30 seconds, 55 ⁇ 30 seconds, 72 V L5 minutes, 30 cycles; 72°C for 10 minutes.
- the amplified product was cloned into the pMD-18T vector and confirmed by sequencing to obtain a DNA sequence as shown in SEQ ID NO: 0.1 and SEQ ID NO. Example 5. Acquisition of a series of derived variants of the rice blast fungus inducible bidirectional gene promoter.
- Example 6 Construction of a binary vector in which a rice blast fungus-inducible bidirectional gene promoter pSCI2 and pSCI3 and a series of derived variants thereof were fused to a GMS gene.
- the above-mentioned rice blast fungus-inducible bidirectional gene promoter PSCI2 cloned into the pMD-18T vector pSCB and its series of derived variants contain an EcoRL site at its 5' terminus and an Ncol site at its 3' terminus (Fig. 5). Therefore, the binary vector pCAMBIA1301 (product of CAMBIA) and the derivative variant cloned into pMD-18T were digested with restriction enzymes EcoRI and Ncol, respectively.
- the gel fragments of the target DNA fragments were excised and recovered by a recovery kit (produced by Beijing Saibaisheng Co., Ltd.): (1) The binary vector pCAMBIA1301 was deleted 35S The remainder of the promoter, (2) pSCI2 and pSCI3 and its derived variants were excised from the PMD-18T vector. Finally, the recovered (1) (2) parts were mixed and bound with T4 DNA ligase according to a certain ratio, and the ligated product was transformed into E. coli DH5a strain, and confirmed by enzyme digestion and sequencing.
- the promoters and derived variants thus obtained are: pSCI2, pSCI3, pSCI2+I, pSCI3+I, pSCI2-l, pSCI2-2, pSCI2-3, pSCI2-4, pSCI3-l, pSCI-2 and pSCI-3 (See Figures 8, 9, 10, 11 and 12 on the left).
- SC/SP2 and ⁇ respectively, based on ; SC/2 and ; C / 3, respectively, using restriction endonuclease digestion, recovery of large fragments, self-ligation (see Figure 13 left) .
- Example 7 Two-way gene promoters pSCI2 and pSCI3 and a series of derived variants thereof and gene expression binary vectors were transformed into rice.
- the above binary vector plasmid DNA was separately introduced into competent cells (competent cells) of Agrobacterium strain EHA105 (E. Hood, et al, 1993, Transgen. Res. 2: 208-218, available from CAMBIA) by electroporation.
- competent cells competent cells
- EHA105 E. Hood, et al, 1993, Transgen. Res. 2: 208-218, available from CAMBIA
- the preparation and electroporation were carried out according to the method of Molecular Cloning (Sambrook et al, 1998), and cultured at 28'C to form a single colony.
- the transformed Agrobacterium was inoculated into YM liquid medium containing 5 ( ⁇ g/ml Kanamycin, 28 ⁇ , shaken at 220 rpm for 16 hr, and the above liquid was directly subjected to the above PCR identification.
- Agrobacterium tumefaciens-mediated transformation of rice is carried out according to the method of Hiei et al. (Hiei et al., Plant Mol. Biol., 1997, 35: 205-218) o Specifically: preparation of immature seeds of rice, surface-sterilized and extruded rice The immature embryos were placed on solid induction medium and dark cultured to induce callus. After about 5-7 days, the callus is peeled off, transferred to freshly prepared subculture medium, subcultured for about 5 days under the same conditions; or prepared for mature embryo callus of rice, and subculture is selected for 5-7 days. The yellowish calli are co-cultured.
- the callus with better state was selected and co-cultured with a suitable amount of transformed Agrobacterium suspension (OD 0.3-0.5) for 15-20 minutes, transferred to solid artificial medium, and cultured in the dark at 26 ° C for 2-3 days.
- the co-cultured callus was placed on a differentiation medium containing 50 mg/L Hygromycin (manufactured by Roche), and then cultured for 3 days in a dark state, and then transferred to a light condition of 15 h/d for culture. About 15-25 days, a green dot grows.
- the seedlings were further differentiated after 30-40 days. When the buds of the resistant callus differentiated to about 2 cm, the seedlings were transferred to a rooting medium, cultured for about two weeks, and transplanted into the soil at room temperature.
- Table 1 The coefficients of the TO-transgenic rice plants obtained by each structure were identified as shown in Table 1.
- Example 8 Two-way gene promoter; ?SC/2 and; ⁇ and Gt/S gene expression binary vector transformation into Arabidopsis thaliana.
- the bidirectional gene promoters 3 ⁇ 4SC 2 and ; CZ?, CaMV35S and Gt/S gene expression binary vectors were electroporated into Agrobacterium strain GV3101 (Koncz C, Schell J. 1986. Mol Gen). Genet, 204:383-396, available from GAMBIA) Competent cells (competent cell preparation and electroporation were performed according to the method of Molecular Cloning (Sambrook et al, 1998)), cultured at 28 °C Single colony.
- the transformed Agrobacterium was inoculated into YM liquid medium containing 5 ( ⁇ g/ml Kanamycin, shaken at 28 °C, 220 rpm for 16 hr, and the bacterial liquid was directly identified by PCR.
- Arabidopsis thaliana transformation takes direct infiltration.
- Arabidopsis tMiana the ecological Landsberg erecta, The European Arabidopsis Stock Centre (NW20), was selected to remove the knotted and unflowered flower buds.
- the correct Agrobacterium was identified by PCR in LB liquid medium (containing 50 g/ml Kanamycin and 100 g/ml rifampicin) to a OD 6 (M ) of about 0.6, and the cells were collected by centrifugation at 4000 g.
- the cells and the infiltrate (MS basic component + 5% sucrose, 30 ⁇ /L of Titon 100) were uniformly mixed at 1:1.
- the mixed infiltrate was placed in a petri dish, and the flowering Arabidopsis flowers were fully infiltrated into the mixed infiltrate for 20-30 seconds. The excess liquid was removed by absorbent paper, moisturized for 2 days in the dark, and transferred to 21 'C light culture. .
- T1 transgenic Arabidopsis thaliana obtained by each structure were identified as follows: 24 strains of pSCU strain, 18 strains of ⁇ ⁇ C strain, 16 strains of 0? 35S strain and 21 strains of WP strain.
- the harvested TO-transgenic seeds ie T1 generation
- the harvested TO-transgenic seeds should be immersed in 30 ⁇ 50 waters per plant for 48 hours, and then transferred to 0.6% agar plates after seed germination (containing 50 ⁇ ⁇ /ml of hygromycin) on the germination.
- seed rooting condition was investigated, and the normal rooting (ie, hygromycin-resistant) seedlings on the hygromycin plate were transferred to the field, which was the T1 generation transgenic seedling. Treat the T1 with the seedlings growing to 4 leaves and one heart.
- the first group was inoculated with M. oryzae strain 007, and the conidia were made to a concentration of 10 5 with 0.025% Tween 20 aqueous solution.
- each harvested T1 seed is treated with 10 volumes of 10% sodium hypochlorite solution (including
- GUS activity assay was performed according to the method of Yang et al. (Yinong Yang et al, the Plant Journal, 2000, 22(6): 543-551). Specifically: take the tissue to be tested and rapidly grind it into liquid nitrogen, add appropriate amount of extraction buffer, grind into homogenate in ice bath, centrifuge at 12000 g for 10 minutes at 4 °C; take 5 ⁇ l of supernatant to add 45 ⁇ 2 mM 4-MUG(4-methyl mbeUiferyl-D-glucuronide), and quickly pipet 5 ⁇ of the mixture into Na 2 C0 3 of ⁇ 0.2 ⁇ to terminate the reaction as a control.
- ⁇ OS 2 p5aSP3 has the ability to drive gene expression in both directions, which is constitutively expressed in rice leaves and has the characteristic of enhancing the infection of pathogenic bacteria.
- GUS tissue staining was performed according to Jefferson et al. (Jefferson, et al., EMBO J., 1987, 6: 3901-3907). The selected transgenic material was first cleaned on a sterile water surface. After blotting with sterile absorbent paper, immersed in GUS staining solution, pumping for 5 minutes, then placing at 28 ° C, shaking on a 200 rpm shaker for 30 minutes to overnight, and then bleaching in 70% or 100% ethanol to develop color. The results showed that both the bidirectional gene promoter and its derived variants could drive genes induced by rice blast fungus in the leaves of transgenic rice (Fig.
- This binary vector was constructed on the basis of Example 4.
- the plasmid was digested with BstE II for 6 hours, then filled in with T4 DNA polymerase, phenol extracted and dissolved in double-distilled sterile water, digested with Nco l, and the vector fragment was recovered to link the endogenous or foreign gene to be chimeric. II, which may have an existing or later increased N ⁇ I site linker at the 5' end, and its 3' end should be a smooth end.
- the SC plasmid can be digested with EcoRI, filled in, then ligated into the blunt-ended gene of interest, and the direction of ligation is determined.
- Nco [double-enzyme-cutting, blunt-ended, ready-to-chimeric gene II, and identify the direction of ligation, and then digest the plasmid with EcoRI. Fill in, then connect to the blunt-ended gene of interest I ( Figure 6).
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Abstract
The present invention discloses bi-directional gene promotor, its variant or functional equivalent and the use thereof. Also provided is a recombinant nucleic acid sequence, a recombinant construct, an expression system and a plant cell comprising the promoter, variant or functional equivalent thereof. In addition, the present invention further discloses a method for isolating the bi-directional gene promotor and for preparing a transgenic plant.
Description
一种分离双向启动子的方法及其应用 技术领域 Method for separating bidirectional promoter and application thereof
本发明属于植物基因工程领域。具体地, 涉及一种分离的双向基因启动子、含 有该启动子的重组核酸序列, 构建体和表达系统, 及其驱动功能基因在植物中表达的 用途。 还涉及分离双向基因启动子的方法。 The invention belongs to the field of plant genetic engineering. In particular, it relates to an isolated bidirectional gene promoter, a recombinant nucleic acid sequence comprising the promoter, a construct and an expression system, and the use thereof to drive expression of a functional gene in a plant. It also relates to a method of isolating a two-way gene promoter.
背景技术 Background technique
植物在生长过程中会受到大量的、 不同种类的微生物的侵袭, 因此, 由这些微 生物引起的病害一直是作物歉收的主要原因之一。但是植物在与这些微生物长期互作 过程中, 也进化出多种抵御周围潜在病原微生物侵袭的防御机制, 以使其自身在与多 种微生物的竞争中得以生存和繁衍。一般来说,植物对病原物的抵御机制可分为两类: 即组成性的被动防御和诱导性的主动防御,其中诱导性的主动防御在植物抵御病原菌 中起主导作用。 所谓的主动防御, 是指植物在受到病原物侵染时, 能够迅速识别并启 动的一系列防卫反应。 过敏性反应(hypersensitive response, 简称 HR) 是一类典型的 主动防卫反应, 其表现为: 寄主植物在病原菌侵染位点周围常常迅速发生局部的细胞 死亡。对于活体营养和一些非活体营养的病原物来说, 植物的这种局部细胞死亡即可 有效地限制病原物进一步扩展到周围的细胞中, 而表现为抗病。 Plants are affected by a large number of different types of microorganisms during their growth. Therefore, the diseases caused by these microorganisms have always been one of the main causes of crop failure. However, in the long-term interaction with these microorganisms, plants have also evolved a variety of defense mechanisms against the invasion of surrounding pathogenic microorganisms, so that they can survive and multiply in competition with various microorganisms. In general, plant resistance to pathogens can be divided into two categories: constitutive passive defense and induced active defense, in which induced active defense plays a leading role in plant resistance to pathogens. The so-called active defense refers to a series of defense responses that plants can quickly identify and activate when they are infected by pathogens. Hypersensitive response (HR) is a typical type of active defense response, which is characterized by: Host plants often rapidly develop local cell death around the pathogen infection site. For living nutrients and some non-living nutrient pathogens, this local cell death of the plant can effectively limit the spread of the pathogen into the surrounding cells, which is manifested as disease resistance.
在许多植物病害体系中, 寄主品种 (或品系) 与病原物小种 (或致病型) 之间 存在的基因对基因关系, 即品种表现抗病性是其中含有的抗性基因 (R基因) 与病原 菌中对应的无毒基因 (^vr基因) 互作的结果。 在这种互作中, 涉及了信号的识别、 转导及级联放大, 最终启动一系列防卫反应而使植物表现抗病。这种抗病性被称为基 因对基因抗性, 或小种专化抗性。 然而, 当病原物群体中不含对应的无毒基因或无毒 基因发生变异的情况下,寄主植物由于不能对改变或变异了的病原物进行有效地识别 并启动防卫反应, 最终表现为感病。培育利用抗病品种长期以来一直是控制植物病害 的主要有效手段。 但是, 长期大面积种植单一抗性基因的品种, 会给病原物群体造成 高选择压力导致产生新的优势毒性小种, 而使植物"丧失"抗病性。 目前, 抗病品种主 要是通过有性杂交而获得, 通常要经过杂交、 回交及一系列的后代筛选过程, 周期较 长,有时抗病品种的培育速度甚至跟不上新优势小种的产生速度(Ben J. Corneslissen, Plant Physiol., 1993, 101 :700-712)o此夕卜, 有性杂交受种间生殖隔离的限制, 远源植物
或其它类生物的有用基因不能如愿导入, 因此, 抗源有限。 In many plant disease systems, the gene-to-gene relationship between the host cultivar (or strain) and the pathogen race (or pathogenic type), that is, the resistance of the cultivar is the resistance gene (R gene) contained therein. The result of interaction with the corresponding avirulence gene (^vr gene) in the pathogen. In this interaction, signal recognition, transduction, and cascade amplification are involved, and a series of defensive responses are initiated to render the plant resistant to disease. This disease resistance is called gene-to-gene resistance, or race-specific resistance. However, when the pathogen population does not contain a corresponding avirulence gene or a non-toxic gene, the host plant can not effectively identify and change the pathogen that changes or mutates, and initiates a defense response, which ultimately manifests as a disease. . The cultivation and utilization of disease-resistant varieties has long been the main effective means of controlling plant diseases. However, long-term large-scale cultivation of a single resistance gene will cause high selection pressure on the pathogen population, resulting in the emergence of new dominant toxic races, which will cause plants to "lost" disease resistance. At present, resistant varieties are mainly obtained through sexual hybridization, usually through hybridization, backcrossing and a series of offspring screening processes, with a long cycle, and sometimes the breeding rate of resistant varieties can not keep up with the emergence of new dominant species. Speed (Ben J. Corneslissen, Plant Physiol., 1993, 101:700-712) o This, sexual hybridization is restricted by interspecific reproductive isolation, distant plants Genes of useful genes or other organisms cannot be introduced as intended, and therefore, the source of resistance is limited.
近年来, 随着一些有用抗性基因与防卫基因的克隆, 人们期望通过转基因途径 来培育抗病品种。如将某一克隆的抗病基因转入其它品种或其它种中,可以省去杂交、 回交和后代选择等繁杂步骤而缩短育种进程,但这种转基因植物的抗性依然是小种专 化抗性, 只抗某一或某些特定的小种而不抗其它小种, 因此, 也同样面临着由于新小 种产生而带来的抗病性丧失问题 (Ben J. Comeslissen, Plant Physiol., 1993, 101 :700-712)。 利用组成型启动子 (如常用的 CaMV 35S启动子) 驱动某些基因 (如 防卫基因)而使转基因植物增强转基因植物抗病性被认为是培育相对持久抗病品种的 有效策略之一, 但这一策略有其自身难以克服的缺陷。 首先, 如前所述, 植物的过敏 性反应是通过其自身局部细胞的死亡而杀死或限制病原菌的扩展从而表现抗性的。对 植物而言, 这种"牺牲局部保整体"策略中表达的基因往往是诱导性表达的。 如果将这 些基因 (如 HR基因)组成性地表达对植物往往具有破坏性( de Wit, 1992, Annu. Rev. Phytopathol., 30: 391-418)。 其次, 强组成型启动子驱动的转基因表达易引起转录后的 基因沉默, 且转基因的转录水平越高, 发生基因沉默的几率越大 (Elmayan T and Vaucheret H, 1996, The Plant J., 9(6): 787-797)。因此,通过转基因途径培育广谱或持久 抗病作物的理想的策略是:利用病原菌侵染诱导性基因启动子驱动有用抗病关键基因 的非特异诱导性表达, 使植物仅在受到病原物侵染时表达防卫反应, 从而限制病原菌 的生长, 甚至将其杀死 (Peng, 1994, Integrated Resource Management for Sustainable Agriculture, pp450-453 这样既可缓解抗病过程中植物的受害程度,又可避免或降低 转基因沉默现象的发生。 为此, 许多实验室都在寻找病原物侵染诱导性启动子。 本实 验室从水稻中克隆了一个稻瘟菌非小种特异性侵染诱导性基因启动子 MPP774, 其受 诱导表达的最高活性为 CaMV35S的 3〜10倍 (张世宏, 中国农业大学博士学位论文, 2002), 并利用该启动子驱动不同防卫基因转化水稻, 以期获得具有广谱抗病的水稻 株系。 尽管如此, 缺少可供利用的、 病原菌侵染诱导型高效启动子仍然是限制这一策 略实施的主要因素。 In recent years, with the cloning of some useful resistance genes and defense genes, it is expected to develop resistant varieties through transgenic pathways. If a disease-resistant gene of a clone is transferred to another variety or other species, the breeding process can be shortened by eliminating complicated steps such as hybridization, backcrossing and offspring selection, but the resistance of the transgenic plant is still a small species specialization. Resistant, resistant to only one or some specific races and not resistant to other races, therefore, also facing the loss of disease resistance due to the emergence of new races (Ben J. Comeslissen, Plant Physiol. , 1993, 101 : 700-712). Using a constitutive promoter (such as the commonly used CaMV 35S promoter) to drive certain genes (such as defense genes) to enhance the resistance of transgenic plants to transgenic plants is considered to be one of the effective strategies for breeding relatively long-lasting resistant varieties, but A strategy has its own flaws that are difficult to overcome. First, as mentioned above, the allergic reaction of plants is caused by the death of their own local cells to kill or limit the expansion of pathogens to express resistance. For plants, the genes expressed in this "sacrificial partial preservation" strategy are often inductively expressed. If these genes (such as the HR gene) are expressed constitutively, they are often destructive to plants (De Wit, 1992, Annu. Rev. Phytopathol., 30: 391-418). Second, strong constitutive promoter-driven transgene expression tends to cause post-transcriptional gene silencing, and the higher the transcriptional level of the transgene, the greater the probability of gene silencing (Elmayan T and Vaucheret H, 1996, The Plant J., 9 ( 6): 787-797). Therefore, the ideal strategy for cultivating broad-spectrum or long-lasting disease-resistant crops through transgenic pathways is to use pathogen-inducible inducible gene promoters to drive non-specific inducible expression of key genes responsible for disease resistance, allowing plants to be infected only by pathogens. Express defense response, thereby limiting the growth of pathogens and even killing them (Peng, 1994, Integrated Resource Management for Sustainable Agriculture, pp450-453, which can alleviate the degree of damage to plants during disease resistance, and avoid or reduce transgenics Silence is happening. To this end, many laboratories are looking for pathogen-inducible inducible promoters. This laboratory cloned a rice blast fungus non-small-specific infection-inducible gene promoter MPP774 from rice. The highest activity of induced expression was 3 to 10 times that of CaMV35S (Zhang Shihong, Ph.D., China Agricultural University, 2002), and the promoter was used to drive different defense genes to transform rice, in order to obtain rice strains with broad-spectrum disease resistance. Despite this, there is a lack of available pathogen-inducible efficient promoters. However, the main factor limiting the implementation of this strategy.
另一方面, 在通过基因工程途径培育植物品种的很多时候, 需要将多个不同的 基因转入到同一植物中去。但目前被广泛应用的基因启动子多为单向驱动的, 仅能驱 动一个基因表达。 因此, 导入多个基因需要用同一或者多个不同的启动子构建多个载 体, 这样就会导致转基因过程烦琐、 效率降低。 并且, 有研究表明同一启动子驱动下 的转基因植物易出现转录水平的转基因沉默(de Eilde C, et al, 2000, Plant Mol. Biol. 43:
347-359),而且这种基因沉默与所转基因的编码序列(VauCheret H, et al, C. R. Acad. Sci. Paris, 1993, 317: 310-323)和启动子的长度(De Neve, M. et al, Mol. Gen. Genet., 1999, 260, 582-592.) 无关。 甚至具有序列同源性的不同启动子也能引起转录水平的基因沉 默。 Vaucheret H等研究发现启动子间 90bp的同源序列即足以引起转录水平的基因沉 默 (Vaucheret H, et al, C. R. Acad. Sci. Paris, 1993, 317: 310-323)。 因此, 在将不同基因 转入同一植物时, 应尽量避免使用同一启动子或具有同源序列的启动子。从这一角度 考虑,利用具有双向驱动基因表达能力的基因启动子应可有效地避免上述转录水平基 因沉默的发生。 为此, Xie MT等提出了人工构建双向基因启动子以驱动两个基因表 达的策略, 并证明: 在单向启动子的反方向融合一基本启动子区域 (TATA盒区域), 其具有双向驱动基因表达的能力 (Xie MT, et al, 2001, Nature Biotechnol. 19:677-679)。 On the other hand, many times when cultivating plant varieties through genetic engineering, multiple different genes need to be transferred to the same plant. However, the gene promoters that are currently widely used are mostly unidirectionally driven and can only drive one gene expression. Therefore, the introduction of multiple genes requires the construction of multiple vectors with one or more different promoters, which leads to cumbersome and inefficient transgenic processes. Moreover, studies have shown that transgenic plants driven by the same promoter are susceptible to transcriptional transgene silencing (de Eilde C, et al, 2000, Plant Mol. Biol. 43: 347-359), and this gene is silenced with the coding sequence of the transgene (Vau C heret H, et al, CR Acad. Sci. Paris, 1993, 317: 310-323) and the length of the promoter (De Neve, M Et al, Mol. Gen. Genet., 1999, 260, 582-592.) Irrelevant. Even different promoters with sequence homology can cause gene silencing at the transcriptional level. Vaucheret H et al. found that a 90 bp homologous sequence between promoters is sufficient to cause gene silencing at the transcriptional level (Vaucheret H, et al, CR Acad. Sci. Paris, 1993, 317: 310-323). Therefore, when transferring different genes into the same plant, the same promoter or a promoter with homologous sequences should be avoided as much as possible. From this point of view, the use of a gene promoter having a bidirectional driving gene expression ability should be effective in avoiding the occurrence of the above-mentioned transcription level gene silencing. To this end, Xie MT et al. proposed a strategy for artificially constructing a bidirectional gene promoter to drive expression of two genes, and proved that: a unidirectional promoter is fused in the opposite direction to a basic promoter region (TATA box region), which has a bidirectional drive. The ability to express genes (Xie MT, et al, 2001, Nature Biotechnol. 19: 677-679).
从培育广谱抗病作物品种的角度讲, 分离、 鉴定病原菌非小种特异性诱导的、 具有双向驱动基因表达能力的植物基因启动子,对于通过基因工程来培育持久或广谱 抗病作物是非常迫切的。 而且, 水稻、 拟南芥等植物全基因组序列的测定和释放, 有 助于分离这种双向基因启动子。 发明内容 From the perspective of cultivating broad-spectrum disease-resistant crops, it is necessary to isolate and identify plant gene promoters that are non-small-specifically induced by pathogens and have two-way driving gene expression ability, for genetic engineering to cultivate long-lasting or broad-spectrum disease-resistant crops. Very urgent. Moreover, the determination and release of whole genome sequences of plants such as rice and Arabidopsis contribute to the isolation of this bidirectional gene promoter. Summary of the invention
发明概述 Summary of invention
针对上述问题, 本发明人经过长期的探索和大量的研究, 建立了通过负向扣除 筛选 -反向 Northern确认克隆 cDNA, 然后根据生物信息学分析分离候选的双向启动 子区域, 进而通过转基因途径证明该区域双向启动子功能的方法。 最终成功地获得了 具有双向驱动基因表达的双向基因启动子, 并对其序列和功能进行了深入的研究, 发 现该启动子可驱动内源或外源基因在转基因单子叶植物例如水稻叶片中的病原菌诱 导性表达、 在根部的组成性表达, 同时, 还可驱动内源或外源基因在转基因双子叶植 物例如拟南芥根部和叶部强组成性表达。认为该启动子在广谱抗病基因工程中将具有 重要的应用价值。 从而完成了本发明。 因此, 本发明的目的首先在于提供一种双向基 因启动子, 其具有 SEQ ID NO:l或 SEQ ID NO:2所示的序列或其变体序列, 所述变 体序列为针对 SEQ ID O:l所示序列中的第 162位到 932位的碱基进行缺失、 添加、 替换或修饰而得到的序列,或为针对 SEQ ID NO:2所示序列中的第 217位到 987位的 碱基进行缺失、 添加、 替换或修饰而得到的序列。 具体地, 该双向基因启动子序列如 SEQ ID NO:K 2、 3、 4、 14或 15所示。
本发明的目的还在于提供该双向基因启动子的功能等价物, 其具有 SEQ IDIn view of the above problems, the inventors have established long-term exploration and extensive research to establish a cloned cDNA by negative subtractive screening-reverse Northern confirmation, and then isolate candidate bidirectional promoter regions according to bioinformatics analysis, and then prove by transgenic pathway. The method of bidirectional promoter function in this area. Finally, a bidirectional gene promoter with bidirectional driving gene expression was successfully obtained, and its sequence and function were deeply studied. It was found that the promoter can drive endogenous or exogenous genes in transgenic monocots such as rice leaves. Inducible expression of pathogens, constitutive expression in the roots, and also driving of constitutive expression of endogenous or exogenous genes in the roots and leaves of transgenic dicots such as Arabidopsis thaliana. It is believed that this promoter will have important application value in broad-spectrum disease resistance genetic engineering. The present invention has thus been completed. Accordingly, the object of the present invention is firstly to provide a bidirectional gene promoter having the sequence set forth in SEQ ID NO: 1 or SEQ ID NO: 2 or a variant sequence thereof, which is directed against SEQ ID O: a sequence obtained by deleting, adding, replacing or modifying the bases 162 to 932 in the sequence shown, or the bases from position 217 to position 987 in the sequence shown in SEQ ID NO: 2. A sequence obtained by deletion, addition, substitution or modification. Specifically, the bidirectional gene promoter sequence is set forth in SEQ ID NO: K 2, 3, 4, 14 or 15. It is also an object of the present invention to provide a functional equivalent of the bidirectional gene promoter having the SEQ ID
NO:7-13任一个所示的序列, 并且在 5'端融合了 TATA盒。 NO: The sequence shown in any of 7-13, and the TATA box is fused at the 5' end.
本发明还提供了一种启动子, 其具有 SEQ ID NO:7-13任一个所示的序列。 The present invention also provides a promoter having the sequence shown in any one of SEQ ID NOS: 7-13.
本发明还提供了一种增强子, 其特征是在融合到启动子 3,端后可增强启动子的 活性, 其具有 SEQ ID NO:5中第 49位到 176位和 SEQ ID NO:6中第 45位到 497位 所示的任一序列。 The present invention also provides an enhancer characterized in that the activity of the promoter is enhanced after fusion to the promoter 3, which has positions 49 to 176 in SEQ ID NO: 5 and SEQ ID NO: Any of the sequences shown in bits 45 through 497.
本发明还提供了一种关键顺式元件, 其具有 SEQ ID NO:16、 17任一个所示的 序列。 The present invention also provides a key cis element having the sequence shown in any one of SEQ ID NOS: 16, 17.
在本发明的另一个方面, 提供了一种含有上述启动子的重组核酸序列。 优选地, 该重组核酸序列包含至少一种功能性内源或外源基因。 In another aspect of the invention, a recombinant nucleic acid sequence comprising the above promoter is provided. Preferably, the recombinant nucleic acid sequence comprises at least one functional endogenous or exogenous gene.
在本发明中,术语"功能性内源或外源基因"可以是从水稻或其它植物中分离的抗病 基因、 防卫基因及其相关基因, 或者防卫过程中的关键酶类或蛋白的基因, 或者具有直 接或间接杀菌作用的植保素合成酶基因, 也可以是从稻瘟菌分离的无毒基因或与稻瘟菌 · 寄生密切相关的基因的反义 RNA, 还可以是动物或微生物中分离的具有抗病性的活性物 质的基因或合成它们的酶类的基因、 以及抗旱、 抗寒、 抗盐或抗高温等抗逆性基因等有 益基因。 In the present invention, the term "functional endogenous or exogenous gene" may be a disease resistance gene, a defense gene and its related genes isolated from rice or other plants, or a gene of a key enzyme or protein in a defense process, Or the phytoalexin synthase gene having direct or indirect bactericidal action, or may be an antisense RNA isolated from rice blast fungus or a gene closely related to rice blast fungus, or may be isolated from animals or microorganisms. Genes of disease-resistant active substances or genes for synthesizing their enzymes, and beneficial genes such as drought-resistant, cold-resistant, salt-resistant or high-temperature resistance genes.
在本发明的另一个方面, 提供了一种含有上述重组核酸序列的重组构建体。 In another aspect of the invention, a recombinant construct comprising the recombinant nucleic acid sequence described above is provided.
在本发明的另一个方面, 提供了一种含有上述重组构建体的表达系统。 In another aspect of the invention, an expression system comprising the recombinant construct described above is provided.
在本发明的再一个方面, 提供了上述的启动子、 含有该启动子的重组核酸序列、 构建体或表达系统在驱动内源或外源基因在植物中表达方面的用途。 In still another aspect of the invention, there is provided the use of a promoter as described above, a recombinant nucleic acid sequence comprising the promoter, a construct or an expression system for driving expression of an endogenous or exogenous gene in a plant.
在本发明中, 所述的植物是单子叶植物或双子叶植物。 所述的单子叶植物优选 是水稻, 所述的双子叶植物优选是拟南芥。 In the present invention, the plant is a monocot or a dicot. The monocot is preferably rice, and the dicot is preferably Arabidopsis.
本发明还提供了一种分离双向基因启动子的方法, 其包含从生物, 例如植物中 分离表达的多个基因的 cDNA, 并通过本领域已知的生物信息学手段分析这些 cDNA 在染色体上的具体位置;然后,从中寻找鉴定出 2个位于某一段 DNA (命名为 DNA1 ) 的相连两侧、且转录方向相反的 cDNA; 通过转基因分析和确认 DNA1是否为双向基 因启动子,即以该 DNA1序列作为后选双向驱动子通过转基因手段加以分析和确认其 表达的器官和组织特异性以及对干旱、 寒冷、 盐碱、 高温等非生物逆境与病虫害等生 物逆境的响应, 最后, 通过渐变缺失确定其中的顺式元件, 并选择其中适当的顺式元 件和序列、 通过 DNA重组构建相应长度和表达强度的人工启动子。 该策略尤其适用
于从全基因组序列已测定的生物如水稻、拟南芥等中分离其它具有双向驱动基因表达 功能或从其他植物中克隆具有双向驱动基因表达功能的启动子。这类启动子驱动其相 连两侧基因的表达可具有不同的组织或器官特异性, 既可是诱导性表达的, 也可是组 织、 器官或发育阶段特异性表达的, 还可是组成性表达的。 The present invention also provides a method for isolating a bidirectional gene promoter comprising cDNAs of a plurality of genes isolated and expressed from an organism, such as a plant, and analyzing the cDNA on the chromosome by bioinformatics means known in the art. Specific position; then, to find out two cDNAs located on the opposite side of a certain DNA (named DNA1) and having opposite transcription directions; by transgenic analysis and confirming whether DNA1 is a bidirectional gene promoter, that is, the DNA1 sequence As a post-selective two-way driver, it is analyzed by transgenic means to confirm the organ and tissue specificity of its expression and its response to abiotic stresses such as drought, cold, salinity, high temperature and other abiotic stresses and pests. Finally, it is determined by gradual deletion. The cis-elements, and select the appropriate cis-elements and sequences, and construct artificial promoters of corresponding length and expression intensity by DNA recombination. This strategy is especially applicable Other promoters having a two-way driving gene expression function or cloning from other plants having a bidirectional driving gene expression function are isolated from organisms whose whole genome sequence has been determined, such as rice, Arabidopsis, and the like. Such promoters drive the expression of genes linked to their sides to have different tissue or organ specificities, either inductively expressed, specifically expressed in tissues, organs or developmental stages, or constitutively expressed.
具体地, 本发明的方法包括: (1) 制备病原菌例如稻瘟菌侵染的水稻 cDNA文 库, 并铺板转膜; (2) 以健康稻叶的 mRNA为探针杂交, 选取未杂交上的克隆作为候 选诱导性 cDNA克隆并通过反向 Northern确认; (3)将确认的诱导性 cDNA序列与公 布的水稻基因组数据库进行比对分析,寻找以头对头方式 (即 5'端相对)且与一段 DNA 片段 (命名为 DNA1 ) 的互补链匹配的两个 cDNA; (4) 通过将 DNA1与外源可转录 基因连接, 检测外源可转录基因的表达来验证 DNA1的双向基因启动子的功能。 Specifically, the method of the present invention comprises: (1) preparing a rice cDNA library infected by a pathogenic bacteria such as Magnaporthe oryza, and plating the membrane; (2) hybridizing the mRNA of healthy rice leaves as a probe, and selecting a clone that is not hybridized. As a candidate inducible cDNA clone and confirmed by reverse Northern; (3) Compare the confirmed inducible cDNA sequence with the published rice genome database, look for head-to-head (ie, 5' end relative) and a piece of DNA The two strands of the complementary strand of the fragment (designated DNA1) are matched; (4) The function of the bidirectional gene promoter of DNA1 is verified by linking DNA1 to an exogenous transcribable gene and detecting the expression of the exogenous transcribable gene.
具体地, 本发明以水稻为材料, 从中克隆了一个具有双向驱动 2个目的基因表 达能力的启动子。该启动子可在稻瘟菌侵染的水稻叶中诱导性地表达 2个目的基因(附 图 8、 14), 还可在水稻根部特异组成性地表达 2个目的基因 (附图 15)。 该启动子还 可在转基因拟南芥根部和叶部组成性地表达 2个目的基因 (附图 16、 17、 18)。 更具 体地, 该双向启动子的序列如 SEQ ID NO: 1和 SEQ ID NO: 2, 上述两序列为反向 互补序列, 即为同一 DNA片段的两条互补单链的序列, 为方便叙述, 将其分别命名 为 pSCI2和 pSCI3。其中, pSCI2的 TATA盒和转录起始位点(TSS)分别位于 SEQ ID NO: 1的 1095bp和 1125 bp,pSCI3的 TATA盒和 TSS分别位于 SEQ ID NO: 2的 1096bp 和 1026 bp;任选一段可转录的 DNA序列(包括内源和外源 DNA序列)可置于 或 /和 pSCI3的 3'端并与之相连, 构建双元表达载体, 经适当途径导入水稻或拟南芥 后,在转基因水稻和拟南芥中 pSCI2或 /和 pSCB能驱动该可转录的 DNA序列的转录。 Specifically, the present invention uses rice as a material to clone a promoter having the ability to drive two genes of interest in both directions. The promoter can induce the expression of two genes of interest in the rice leaves infected by Magnaporthe oryzae (Fig. 8, 14), and can also express two target genes in the rice roots specifically (Fig. 15). The promoter also constitutively expresses two genes of interest in the roots and leaves of transgenic Arabidopsis thaliana (Figures 16, 17, 18). More specifically, the sequence of the bidirectional promoter is SEQ ID NO: 1 and SEQ ID NO: 2, and the above two sequences are reverse complementary sequences, that is, sequences of two complementary single strands of the same DNA fragment, for convenience of description, They are named pSCI2 and pSCI3, respectively. Wherein, the TATA box and the transcription start site (TSS) of pSCI2 are located at 1095 bp and 1125 bp of SEQ ID NO: 1, respectively, and the TATA box and TSS of pSCI3 are located at 1096 bp and 1026 bp of SEQ ID NO: 2, respectively; The transcribed DNA sequence (including endogenous and exogenous DNA sequences) can be placed at or ligated to the 3' end of pSCI3 to construct a binary expression vector, which can be transgenic after introduction into rice or Arabidopsis through appropriate routes. pSCI2 or/and pSCB in rice and Arabidopsis can drive transcription of this transcribable DNA sequence.
本发明还提供了分别位于 pSCI2和 pSCI3 3'端的、 · 属于水稻 2种不同蛋白酶 /胰 凝乳蛋白酶抑制剂 (0^«'2和(¾¾^)基因的内含子, 它们分别包含在 SEQ ID NO: 5 和 SEQ ID NO: 6所示的序列中。其中, SEQ ID NO: 5 中从 49 bp至 176bp为 OsSci2 基因的内含子序列, SEQ ID NO: 6中从 45bp至 497bp为 O d3因的内含子序列。 将 SEQ ID NO: 5置于 SEQ ID NO: 1的 3'端并与其融合, SEQ ID NO: 6置于 SEQ ID NO: 2的 3'端并与其融合, 分别所得的两段 DNA序列: ^C/2+ /和^ C/3+J, 它们 分别具有如 SEQ ID NO: 3和 SEQ ID NO: 4所示的核苷酸序列。其特征在于: pSCI2+I 比 pSCI2具有更强诱导表达目标基因的活性(附图 11 ) ; ^C 3+/比^ 具有更强 诱导表达目标基因的活性 (附图 12)。 该内含子也可与其它启动子的融合、 并具有对
目标基因表达的增强作用。 The present invention also provides introns belonging to two different protease/chymotrypsin inhibitors (0^«'2 and (3⁄43⁄4^) genes of rice at the 3' end of pSCI2 and pSCI3, respectively, which are respectively contained in SEQ ID NO: 5 and SEQ ID NO: 6. The intron sequence of the OsSci2 gene from 49 bp to 176 bp in SEQ ID NO: 5 is from 45 bp to 497 bp in SEQ ID NO: 6. An intron sequence of d3. SEQ ID NO: 5 is placed at the 3' end of SEQ ID NO: 1 and fused thereto, and SEQ ID NO: 6 is placed at the 3' end of SEQ ID NO: 2 and fused thereto, respectively The resulting two-stage DNA sequence: ^C/2+/ and ^C/3+J, which have the nucleotide sequences shown in SEQ ID NO: 3 and SEQ ID NO: 4, respectively, are characterized by: pSCI2+ I has stronger activity in inducing expression of the target gene than pSCI2 (Fig. 11); ^C 3+/ is more potent in inducing expression of the target gene (Fig. 12). The intron can also be combined with other promoters. Fusion, and have Enhancement of target gene expression.
另一方面, 本发明还提供了由 pSCI2和 pSCI3经过碱基缺失所获得的几种衍生 变体。 它们分别是通过 PCR扩增由 pSCU 经 5'端缺失获得了衍生变体 pSCI2-l、 pSCI2-2、 pSCI2-3和 pSCI2-4; 由 pSCI3经 5'端缺失获得了衍生变体 pSCI3-l、 pSCI3-2 和 pSCI3-3。 PCR扩增引物如图 7所示。 pSCU-1、 pSCI2-2、 pSCI2-3和 pSCI2-4分别 具有 SEQ ID NO: 1序列中从第 69、 226、 403和 616位到第 1152位的核苷酸序列, 其序列分别如 SEQ ID NO: 7、 8、 9、 10所示; 7SCZW、 和 ? 分别具 有 SEQ ID NO: 2序列中从第 93、 214和 400位到第 1152位的核苷酸序列, 其序列 分别如 SEQ ID NO: 11、 12、 13所示。 其特征在于: 这些衍生变体均具有不同程度 的启动子活性, 可根据使用的需要, 选择其中任一衍生变体用于驱动目标基因不同程 度的表达(图 9和图 10)。本领域的普通技术人员可以理解, 在 SEQ ID NO:7-13的 5' 端融合了 TATA盒后的 DNA序列同样具备本发明所述的双向基因启动子的功能。 In another aspect, the invention also provides several variant variants obtained by base deletion of pSCI2 and pSCI3. The derived variants pSCI2-l, pSCI2-2, pSCI2-3 and pSCI2-4 were obtained by PCR amplification from the 5'-end deletion of pSCU, respectively. The derived variant pSCI3-l was obtained from the 5'-end deletion of pSCI3. , pSCI3-2 and pSCI3-3. The PCR amplification primers are shown in Figure 7. pSCU-1, pSCI2-2, pSCI2-3 and pSCI2-4 have the nucleotide sequences from positions 69, 226, 403 and 616 to position 1152 in the sequence of SEQ ID NO: 1, respectively, the sequences of which are respectively SEQ ID NO: 7, 8, 9, 10; 7SCZW, and ? have the nucleotide sequences from positions 93, 214 and 400 to position 1152 in the sequence of SEQ ID NO: 2, respectively, the sequences of which are respectively SEQ ID NO : 11, 12, 13 are shown. It is characterized in that: these derived variants have different degrees of promoter activity, and any of the derived variants can be selected to drive different degrees of expression of the target gene according to the needs of use (Fig. 9 and Fig. 10). It will be understood by one of ordinary skill in the art that the DNA sequence fused to the TATA box at the 5' end of SEQ ID NO: 7-13 also functions as a bidirectional gene promoter of the present invention.
本发明还提供了由 pSCI2和 pSCI3经限制性核酸内切酶切所得到的两种衍生变 体 pSCISP2和 pSCISP3。pSCISP2是由 pSCU经限制性核酸内切酶 酶切后自连所 得, 具有 SEQ ID NO: 14的核苷酸序列, 其特征在于缺失了 SEQ ID NO: 1中 162 位到 932位的核苷酸 ; 7SC/SP3是由 pSCI3经限制性核酸内切酶 Spei酶切后自连所得, 具有 SEQ ID NO: 15的核苷酸序列, 其特征在于缺失了 SEQ ID NO: 2中 217位到 987位的核苷酸。 本领域的普通技术人员可以理解, 该衍生变体也可通过 PCR获得。 它们均具有双方向驱动目的基因在水稻叶片中组成性表达的能力,且病原菌侵染可增 强其表达活性 (附图 13)。 The invention also provides two variant variants pSCISP2 and pSCISP3 obtained by restriction endonuclease digestion of pSCI2 and pSCI3. pSCISP2 is a self-ligated fragment of the pSCU by restriction endonuclease and has the nucleotide sequence of SEQ ID NO: 14 and is characterized by the deletion of nucleotides 162 to 932 of SEQ ID NO: 1. ; after 7SC / SP3 Spei is digested with endonuclease restriction endonucleases and self-ligated resulting from the pSCI3 having SEQ ID NO: 15 is the nucleotide sequence, wherein deletion of SEQ ID NO: 2 in the 217 to 987 Nucleotide. One of ordinary skill in the art will appreciate that the variant variants are also obtainable by PCR. They all have the ability to bidirectionally drive the constitutive expression of the gene of interest in rice leaves, and pathogen infection enhances its expression activity (Fig. 13).
本领域的普通技术人员可以了解, 将上述水稻双向基因启动子及其衍生变体的 启动子与内源或外源可转录基因连接,通过检测该基因的表达情况来确定该启动子或 其衍生变体的启动子活性。例如, 上述水稻双向基因启动子及其衍生变体的启动子活 性可以通过在启动子下游嵌合报告基因 Gt/S, 以 Gt/S的表达情况得以确认。 一个较 佳的实施例是利用 Jerfferson等 (Jerfferson, EMBO J.,1987,6:3901~3907) 建立的成熟 的方法。 One of ordinary skill in the art will appreciate that the promoter of the above-described rice two-way gene promoter and its derivative variants is ligated to an endogenous or exogenous transmissible gene, and the promoter or its derivative is determined by detecting the expression of the gene. Variant promoter activity. For example, the promoter activity of the above-described rice bidirectional gene promoter and its derived variant can be confirmed by the expression of Gt/S by fitting the reporter gene Gt/S downstream of the promoter. A preferred embodiment is the sophisticated method established by Jerfferson et al. (Jerfferson, EMBO J., 1987, 6:3901~3907).
本领域的普通技术人员可以理解,基于本发明的上述教导及本领域的公知常识, 由上述 i^C/2、 pSCI3、 pSCI2+I、 及其各种衍生变体经缺失、 碱基改变、 碱 基添加或再次分离的一部分、几部分或其组合所得到的、 且具有驱动目的基因表达能 力的 DNA片段, 均属于本发明所保护的范围。
利用上述水稻双向基因启动子、 其衍生变体、 增强子和关键顺式元件的任意一One of ordinary skill in the art will appreciate that based on the above teachings of the present invention and the common general knowledge in the art, the above-described i^C/2, pSCI3, pSCI2+I, and various derivative variants thereof are deleted, base-altered, A DNA fragment obtained by base addition or re-isolation of a part, a part or a combination thereof and having the ability to drive expression of a gene of interest is within the scope of protection of the present invention. Using any of the above rice bidirectional gene promoters, derived variants thereof, enhancers and key cis elements
DNA序列构建的表达载体或双元表达载体及其转化获得的细胞系、 重组微生物、 转 基因植物, 均属本专利的保护范围。 即由以上所述的具有启动子活性的 DNA序列片 段构成的、 或利用其中任选的 DNA序列片段重组构建载体用于转化植物及其细胞系 或微生物。 本发明所涉及的重组 DNA技术是本领域一般技术人员能够实现的。 The expression vector constructed by the DNA sequence or the binary expression vector and the cell line obtained by the transformation, the recombinant microorganism, and the transgenic plant are all covered by the patent. That is, the vector constructed by the above-described promoter-active DNA sequence fragment or by using the optional DNA sequence fragment is used to construct a vector for transforming a plant and its cell line or microorganism. The recombinant DNA technology involved in the present invention can be implemented by one of ordinary skill in the art.
本发明所提供的的双向启动子及其衍生变体可与任意感兴趣 DNA片段相连, 构建相关载体、 表达载体或双元表达载体, 在水稻或其它植物中确定该任意 DNA片 段功能。 任意 DNA片段在本发明中是报告基因 或 Luciferase基因, 但在实际应 用中首选的所要表达的基因可以是直接抑制、干扰或破坏病原菌生存的基因, 抗病基 因、 防卫基因、信号传导基因以及能在水稻等植物中表达的可有效控制病害的异源基 因 (如无毒基因、 反义 RNA等), 也可以是具有其它用途的基因。 The bidirectional promoter and its derived variants provided by the present invention can be ligated to any DNA fragment of interest to construct a related vector, expression vector or binary expression vector, and the DNA fragment function can be determined in rice or other plants. Any DNA fragment is a reporter gene or a Luciferase gene in the present invention, but a gene to be expressed which is preferred in practical use may be a gene that directly inhibits, interferes with or destroys the survival of a pathogen, a disease resistance gene, a defense gene, a signaling gene, and a gene. A heterologous gene (such as a non-toxic gene, antisense RNA, etc.) which is expressed in plants such as rice and which can effectively control diseases, and may also be a gene having other uses.
本发明所提供的双向启动子可用于抗病水稻的培育。 将本发明所提供的双向启 动子与两个在抗病中起关键作用的基因连接并构建双元表达载体, 导入根癌农杆菌, 并通过根癌农杆菌介导转化水稻从而获得抗病的或耐病的转基因水稻。本发明所涉及 抗病水稻的一个首选实施方案是培育抗稻瘟病水稻,另一个首选的实施方案是抗根部 病害的水稻。 另外, 本发明所提供的双向启动子的应用不限于水稻, 还可应用于其它 单子叶植物或双子叶植物。 The bidirectional promoter provided by the invention can be used for the cultivation of disease resistant rice. The bidirectional promoter provided by the present invention is ligated to two genes which play a key role in disease resistance and constructs a binary expression vector, introduced into Agrobacterium tumefaciens, and transformed into rice by Agrobacterium tumefaciens to obtain disease resistance. Or disease-resistant genetically modified rice. A preferred embodiment of the disease resistant rice of the present invention is to cultivate rice resistant to rice blast, and another preferred embodiment is rice resistant to root diseases. Further, the application of the bidirectional promoter provided by the present invention is not limited to rice, but can be applied to other monocotyledons or dicotyledons.
因此, 在另一方面, 本发明提供一种植物细胞, 其包含本发明如上所述的启动 子和功能性内源或外源基因。 Thus, in another aspect, the invention provides a plant cell comprising a promoter and a functional endogenous or exogenous gene as described above in the invention.
在另一方面, 本发明还提供了一种获得转基因植物的方法, 其包含将本发明如 上所述的表达系统转化植物。 In another aspect, the invention provides a method of obtaining a transgenic plant comprising transforming an expression system of the invention as described above into a plant.
根据本发明的双向启动子及其衍生变体的特点, 在其两端连接同一基因的反向 序列构建 RNA干扰载体并转入植物, 可进行相关基因的功能与利用研究。 According to the characteristics of the bidirectional promoter and the derivative variant thereof of the present invention, the reverse sequence of the same gene is ligated at both ends thereof to construct an RNA interference vector and transferred into a plant, and the function and utilization of the related gene can be carried out.
本发明中 DNA片段的 "克隆 "是指从自然界天然水稻基因组中分离出的,可以不 经任何改变直接单独利用的一段启动子序列。本领域的普通技术人员可以理解, 依据 本发明的序列, 可以设计上下游一对引物, 通过常规 PCR技术简单再次获得, 也可 以利用其标记探针从水稻基因组文库中筛选获得,甚至可以用经典的酶法或化学方法 合成获得, 这些途径都是本领域一般技术人员可以做到的。 The "cloning" of the DNA fragment in the present invention means a promoter sequence which is isolated from the natural rice genome in nature and can be directly used alone without any change. It will be understood by those skilled in the art that, according to the sequence of the present invention, a pair of upstream and downstream primers can be designed, which can be easily obtained again by conventional PCR techniques, or can be screened from a rice genomic library by using a labeled probe, and even a classic can be used. Synthetic or chemical synthesis is obtained, which can be done by one of ordinary skill in the art.
本发明还提供了 pSCI2和 pSCI3启动子中作用的关键顺式作用元件, 其特征在 于具有 SEQ ID NO: 16和 SEQ ID NO: 17所示的序列。 在本发明中, 这些顺式作用
元件的缺失导致 和 pSCI3启动子驱动的报告基因的表达显著减弱,也就是它们 对 和 启动子驱动的报告基因的表达具有增强作用。这些顺式作用元件也 可以与其它启动子连接对目的基因的表达具有增强作用。 The present invention also provides a key cis-acting element that functions in the pSCI2 and pSCI3 promoters, characterized by having the sequences set forth in SEQ ID NO: 16 and SEQ ID NO: 17. In the present invention, these cis-acting effects Deletion of the elements results in a significant decrease in expression of the reporter gene driven by the pSCI3 promoter, ie, they have an enhanced effect on the expression of the reporter gene driven by the promoter. These cis-acting elements can also be linked to other promoters to enhance expression of the gene of interest.
本发明中抗病双元表达载体的导入水稻的方法在本领域是简单易行的, 也是本 领域中一般技术人员可以做到的。上述启动子或其衍生变体的活性检测以及利用该启 动子进行有针对性的抗病分子操作, 都不可避免的要在植物系统中进行, 一个优选的 实施方案是釆用农杆菌介导的方法 (Hid等, Plant 1.1994,6:271-282) 将其导入水稻 中; 使用者也可根据自己的熟练程度灵活的选用以下转化方法: 原生质体融合法、 基 因枪法轰击法、 电激法、 PEG法、 叶盘法等(Horsch等, Science,l 984,234:496; Barton 等, Cell,1983,32:1033; Liu等, Acta P ytophysiol. Sin,21 :195-205; Horsch等 Science, 277: 1229) The method of introducing a disease-resistant binary expression vector into rice in the present invention is simple in the art and can be accomplished by those skilled in the art. The detection of the activity of the above-mentioned promoter or its derivative variants and the use of the promoter for targeted disease-resistant molecular manipulation are inevitably carried out in plant systems, a preferred embodiment being Agrobacterium-mediated Methods (Hid et al, Plant 1.1994, 6:271-282) introduced it into rice; users can also flexibly choose the following transformation methods according to their proficiency: protoplast fusion method, gene gun bombardment method, electric excitation method, PEG method, leaf disc method, etc. (Horsch et al, Science, l 984, 234: 496; Barton et al, Cell, 1983, 32: 1033; Liu et al, Acta P ytophysiol. Sin, 21: 195-205; Horsch et al. Science, 277: 1229)
根据本发明的启动子有活性的其它衍生变体, 在转基因完成后, 从水稻抗性愈 伤到生根后移入自然环境(如田间)的组织培养期间, 转化组织或个体有类似组成型 表达的活性,这是由于组织培养基中激发活性成分或组织培养期间其同自然植株的差 异 (如类似损伤) 所致, 在移入田间恢复后即基本失去。 Other derivative variants in which the promoter according to the invention is active, after transformation of the transgenic gene, during tissue culture from rice resistant callus to rooting and moving into the natural environment (such as the field), the transformed tissue or individual has similar constitutive expression. Activity, which is caused by the difference in the tissue culture medium during the stimulation of the active ingredient or tissue culture during the tissue culture (such as similar damage), which is basically lost after the transplanted into the field.
本发明中所设计的分子操作工具酶, 除特别说明外, 均为 TaKaRa公司产品。 附图说明: The molecular manipulation tool enzymes designed in the present invention are TaKaRa products unless otherwise specified. BRIEF DESCRIPTION OF THE DRAWINGS:
以下通过附图进一步说明本发明。 The invention is further illustrated by the following figures.
附图 1. 通过负向扣除筛选 -反向 Northern确认克隆稻瘟菌诱导性水稻 cDNA示意 图。 图示说明: 上图圆形部分为将水稻 cDNA文库单克隆铺板并转膜, 以健康稻叶的 mRNA 为探针杂交; 选取未杂交上的克隆 (上图中空心圆点表示) 作为候选诱导性 cDNA克隆。下图表示候选诱导性 cDNA克隆分别阵列于两张尼龙膜上, 分别以健康 稻叶和接种稻瘟菌稻叶的 mRNA为探针杂交进行反向 Northern确认; 图中左为接种 稻瘟菌叶 mRNA (R) 探针, 右为健康叶 mRNA (H)探针。 其中, 具有杂交信号 (图 中黑色圆点)的确定为诱导性 cDNA克隆。 Figure 1. Screening by negative subtraction - Reverse Northern confirmation of cloned rice blast fungus-inducible cDNA. Caption: In the circular part of the above figure, the rice cDNA library was randomly plated and transfected, and the mRNA of healthy rice leaves was used as a probe to hybridize; the clones that were not hybridized (indicated by open circles in the above figure) were selected as candidate induction. Sex cDNA clone. The following figure shows that the candidate inducible cDNA clones were arrayed on two nylon membranes, respectively, and the reversed Northern confirmation was carried out by hybridizing the mRNA of healthy rice leaves and inoculated rice blasts, respectively. The left side of the figure was inoculated with rice blast fungus leaves. The mRNA (R) probe, right, is the healthy leaf mRNA (H) probe. Among them, the hybridization signal (black dot in the figure) was determined to be an inducible cDNA clone.
附图 2. 稻瘟菌诱导性水稻 cDNA克隆的反向 Northern实际确认。 图示说明: 经 过的候选 cDNA经 PCR扩增后,等量阵列于两张尼龙膜上,分别以水稻健康叶 mRNA (左)和稻瘟菌接种稻叶 mRNA (右)为探针杂交, 绝大多数阳性克隆仅在右侧膜上 有杂交信号, 为诱导性克隆。 Figure 2. Reverse Northern real confirmation of rice blast-induced rice cDNA clones. Caption: After the candidate cDNA was amplified by PCR, the same array was arrayed on two nylon membranes, and hybridized with rice healthy leaf mRNA (left) and rice blast fungus inoculated rice leaf mRNA (right) as probes. Most positive clones have a hybridization signal only on the right side of the membrane, which is an inducible clone.
附图 3. 上图为水稻枯草杆菌蛋白酶 /胰蛋白酶抑制剂基因 ay& 和 在染色
体上的结构。 图示说明: 上为结构示意, 右向的粗实心箭头表示 Oy&i2基因转录的 cDNA及其方向, 左向的粗实心箭头表示 ΟΛ¾ 3基因转录的 cDNA及其方向; 空心 框表示内含子; ATG为翻译起始密码子; TSS为转录起始位点。 黑线表示 DNA。 两 个基因分别位于该段 DNA的互补序列上; 下图为水稻品种爱知旭的基因组 Southern 杂交图, 左、右侧探针分别为 OsSci2和 OsSci3的编码区, 泳道 M、 1、 2分别为 DNA 分子量标准、 Hind III酶切基因组和 EcdK 酶切基因组。 Figure 3. The top panel shows the rice subtilisin/trypsin inhibitor gene ay& and staining The structure of the body. Caption: The structure is indicated above, the thick solid arrow in the right direction indicates the cDNA transcribed by the Oy&i2 gene and its orientation, the left solid arrow indicates the cDNA transcribed from the ⁄3⁄3 3 gene and its orientation; the open box indicates the intron; ATG For translation initiation codon; TSS is the transcription start site. Black lines indicate DNA. The two genes are located on the complementary sequence of the DNA; the lower panel shows the Southern hybridization map of the rice variety Aizhixu. The left and right probes are the coding regions of OsSci2 and OsSci3, respectively. Lanes M, 1, and 2 are DNA molecular weight standards, Hind III digestion genome and EcdK digestion genome.
附图 4. 稻瘟菌侵染后 OsSci2和 OsSci3基因的表达动态的 Northern分析。图示说 明: 0、 8、 24、 48、 72为接种时间, 单位为小时 (h), 接种稻瘟菌分别为非亲和小种 131与亲和小种 007, ribosomal RNA为上样量内标。 Figure 4. Northern analysis of the dynamic expression of OsSci2 and OsSci3 genes after infection by Magnaporthe oryzae. Illustration: 0, 8, 24, 48, 72 are the inoculation time, the unit is hour (h), the inoculation of rice blast fungus is non-affinity race 131 and affinity race 007, ribosomal RNA is within the sample volume Standard.
附图 5, 稻瘟菌诱导性水稻双向¾因启动子区域及其衍生变体与报告基因 嵌 合的双元载体构建的示意图。图示说明:上图为启动子及其衍生变体与报告基因 GUS 融合的示意图, 图中实线示意启动子区域, 五边形实心箭头示意 GUS报告基因, 下 同; 下图为去除了 CaMV35S启动子的 pCAMBIA1301载体, 载体上标注的限制性酶 切位点 £c。 和 Ncol为启动子片段的连接位点。 Cc MV 35S为花椰菜花叶病毒的 35S 启动子。 Figure 5 is a schematic representation of the construction of a two-way vector of the rice blast-induced rice bidirectional 3⁄4 promoter region and its derived variants and reporter gene conjugation. Caption: The above figure is a schematic diagram of the fusion of the promoter and its derivative variants with the reporter gene GUS. The solid line indicates the promoter region, the solid arrow of the pentagon indicates the GUS reporter gene, the same below; the following figure shows the removal of CaMV35S Promoter pCAMBIA1301 vector, the restriction enzyme site marked on the vector £c. And Ncol is the junction site of the promoter fragment. Cc MV 35S is the 35S promoter of cauliflower mosaic virus.
附图 6. 嵌合了稻瘟菌诱导性水稻双向基因启动子与感兴趣基因 (基因 I与基因 Π) 的双元表达载体 PCAMBIA1301的结构示意图。 Figure 6. Schematic diagram of the binary expression vector PCAMBIA1301 of the rice blast fungus-inducible rice bidirectional gene promoter and the gene of interest (gene I and gene Π).
附图 7. 稻瘟菌诱导性水稻双向基因启动子区域及其从 5'端渐变缺失的衍生变体 所需 PCR引物对。 图示说明: 引物对名称与启动子或其变体名称相对应, 下划线为 增加的酶切位点, 上游引物增加的位点是 EcoRI, 下游引物增加的是 No I。 Figure 7. Genetically modified mutants of the rice blast-induced rice bidirectional gene promoter region and their degenerate deletions from the 5' end. Caption: The primer pair name corresponds to the promoter or its variant name, underlined as an increased restriction site, the upstream primer increases the site by EcoRI, and the downstream primer increases No I.
附图 8. 接种稻瘟菌的转基因水稻叶片中本发明发现的启动子 和;^ 与广 泛利用 O ^^S启动子驱动的报告基因 表达的活性比较。图示说明:左为 pSCI2 和/ 与 Gf/ 基因连接的示意图, 数字标示以转录起始位点为 +1。右为 GUS表达 活性, Inoculation为稻瘟菌接种处理后 36小时的样品, Mock为水处理后 36小时的 样品, Untreated 为不经任何处理的样品。 pSCI2和 pSCI3驱动的报告基因 Gt/S表达 的活性分别是 Ca ^S驱动的报告基因 Gi/S表达的活性 28和 12倍。 Figure 8. Comparison of the activity of the reporter gene found in the transgenic rice leaves inoculated with Magnaporthe oryzae and the reporter gene driven by the O^^S promoter. Schematic illustration: Left is a schematic representation of pSCI2 and / and Gf/ gene linkage, the number indicates a transcription start site of +1. On the right is the GUS expression activity, Inoculation is the sample 36 hours after the inoculation of Magnaporthe oryzae, Mock is the sample 36 hours after the water treatment, and Untreated is the sample without any treatment. The activity of the reporter gene Gt/S driven by pSCI2 and pSCI3 was 28 and 12-fold, respectively, of the Ca^S-driven reporter gene Gi/S expression.
附图 9. 接种稻瘟菌的转基因水稻叶片中 pSCI2与其衍生变体驱动 基因表达 的活性比较。 图示说明: 左为; ¾SC/2及其衍生变体与 Gt«基因连接的示意图, 图中 数字标示以转录起始位点为 +1, 为无启动子的空载体; 右为对应 GUS表达活性, Inoculation为稻瘟菌接种处理后 36小时的样品, Mock为水处理后 36小时的样品,
Untreated为不经任何处理的样品。 Figure 9. Comparison of the activity of pSCI2 and its derivative variant driving gene expression in transgenic rice leaves inoculated with Magnaporthe oryzae. Schematic description: Left is a schematic diagram of the linkage between the 3⁄4SC/2 and its derived variants and the Gt« gene. The number in the figure indicates that the transcription start site is +1, which is an empty vector without a promoter; the right is the corresponding GUS expression. Activity, Inoculation is a sample 36 hours after inoculation of Magnaporthe oryzae, and Mock is a sample 36 hours after water treatment. Untreated is a sample that has not been treated at all.
附图 10. 接种稻瘟菌的转基因水稻叶片中; ^C ?与其衍生变体驱动 基因表达 的活性比较。 图示说明: 左为 及其衍生变体与 Gf/S基因连接的示意图, 图中 数字标示以转录起始位点为 +1, ^为无启动子的空载体; 右为对应 GUS表达活性, Inoculation为稻瘟菌接种处理后 36小时的样品, Mock为水处理后 36小时的样品, Untreated为不经任何处理的样品。 Figure 10. Comparison of the activity of ^C? and its derivative variants driving gene expression in leaves of transgenic rice inoculated with Magnaporthe oryzae. Schematic illustration: Left is a schematic diagram of the linkage between the derivative variant and the Gf/S gene. The figure indicates that the transcription start site is +1, ^ is an empty vector without a promoter; the right is the corresponding GUS expression activity. Inoculation was a sample 36 hours after inoculation with Magnaporthe oryzae, Mock was a sample 36 hours after water treatment, and Untreated was a sample without any treatment.
附图 11. 接种稻瘟菌后转基因水稻叶片中 与; 驱动的 Gt/S基因表达 强度的比较。 图示说明: 左为 与; 与 G?7S基因连接的示意图, 图中数 字标示以转录起始位点为 +1, WP为无启动子的空载体; 右为对应 GUS表达活性, Inoculation为稻瘟菌接种处理后 36小时的样品, Mock为水处理后 36小时的样品, Untreated为不经任何处理的样品。 Figure 11. Comparison of the intensity of Gt/S gene expression in transgenic rice leaves after inoculation with Magnaporthe oryzae. Schematic description: Left is and; schematic diagram linked to G?7S gene, the figure indicates that the transcription start site is +1, WP is an empty vector without promoter; right is corresponding to GUS expression activity, Inoculation is rice For the 36 hours after the inoculum treatment, Mock was the sample 36 hours after the water treatment, and Untreated was the sample without any treatment.
附图 12. 接种稻瘟菌后转基因水稻叶片中; ASCZ?与 驱动的 Gt/S基因表达 强度的比较。 图示说明: 左为 SCZ?与;^ C/3+/与 Gf/S基因连接的示意图, 图中数 字标示以转录起始位点为 +1, WP为无启动子的空载体; 右为对应 GUS表达活性, Inoculation为稻瘟菌接种处理后 36小时的样品, Mock为水处理后 36小时的样品, Untreated为不经任何处理的样品。 Figure 12. Comparison of the intensity of ASCZ? and driven Gt/S gene expression in transgenic rice leaves after inoculation with Magnaporthe oryzae. Caption: The left is a schematic diagram of the connection between SCZ? and ;C/3+/ and the Gf/S gene. The numbers in the figure indicate that the transcription start site is +1, and WP is an empty vector without a promoter; Corresponding to GUS expression activity, Inoculation was a sample 36 hours after inoculation of Magnaporthe oryzae, Mock was a sample 36 hours after water treatment, and Untreated was a sample without any treatment.
附图 U. pSCISP2与 pSCISP3驱动的 Gt/S基因表达的转基因水稻叶片在接种稻瘟 菌等处理后 GUS表达活性分析。 图示说明: 左为 pSClSJP2与 pSCISP3驱动的 GUS 基因表达载体的示意图, 图中数字标示以转录起始位点为 +1, 为无启动子的空载 体; 右为对应 GUS表达活性, Inoculation为稻瘟菌接种处理后 36小时的样品, Mock 为水处理后 36小时的样品, Untreated为不经任何处理的样品。 Figure U. Analysis of GUS expression activity of pSCISP2 and pSCISP3-driven Gt/S gene-expressing transgenic rice leaves after inoculation with Magnaporthe oryzae. Caption: The left is a schematic representation of the GUS gene expression vector driven by pSClSJP2 and pSCISP3. The figure indicates that the transcription start site is +1, which is an empty vector without a promoter; the right is the corresponding GUS expression activity, and the Inoculation is rice. The sample was 36 hours after the inoculum treatment, and Mock was a sample 36 hours after the water treatment, and Untreated was a sample without any treatment.
附图 14. 双向启动子 pSC/2、 及其衍生变体驱动的 Gf/S基因在转基因水稻 叶部受稻瘟菌诱导表达的组织染色照片。图示说明: 1至 16分别为: pSCI2、PSCI2-l、 pSCI2-2、pSCI2-3、pSCI2-4、pSCI2SP、pSCU+I、 WP、pSCI3、pSCI3-l、pSCJ3-2、 pSCIS-3、 CaMV35S, pSCI3SP、 SC/J+Z和/ ¾SC 2 (未接种)。 图中箭头所示为着色 (蓝色) 的 其中一个位点, 未接种的 和接种的 ^ T植株无蓝色, 说明双向启动子及其衍生 变体在水稻叶片为稻瘟菌诱导性表达。 Figure 14. Tissue staining of the two-way promoter pSC/2, and its derived variant-driven Gf/S gene, induced by Magnaporthe oryzae in the leaves of transgenic rice. Legend: 1 to 16 are: pSCI2, P SCI2-l, pSCI2-2, pSCI2-3, pSCI2-4, pSCI2SP, pSCU+I, WP, pSCI3, pSCI3-l, pSCJ3-2, pSCIS-3 , CaMV35S, pSCI3SP, SC/J+Z and / 3⁄4SC 2 (not vaccinated). The arrow in the figure shows one of the stained (blue) sites, and the uninoculated and inoculated T T plants have no blue color, indicating that the bidirectional promoter and its derived variants are inducible expression of Magnaporthe oryzae in rice leaves.
附图 15. 双向启动子;? SC72、 pSCB区域驱动的 Gi/S基因在转基因水稻根部表达 的组织染色照片。 图示说明: 为无启动子空载体的转基因水稻 Gt/S染色照片, 左侧列示主根根尖, ·中间列示侧根萌发部位, 右侧列示侧根。 pSCI2、 pSCB转基因水
稻植株在主根根尖、 侧根萌发点和侧根处均有 GUS 表达 (图中箭头所示, 蓝色), WP转基因植株在上述部位均不显色, 说明该双向启动子在水稻根部组成性表达。 Figure 15. Two-way promoter; Tissue staining of the expression of the SC/pSCB region-driven Gi/S gene in the roots of transgenic rice. Schematic description: Gt/S staining of transgenic rice with no promoter vector, the main root apex is listed on the left side, the lateral root germination part is listed in the middle, and the lateral root is listed on the right side. pSCI2, pSCB transgenic water The rice plants had GUS expression at the root tip, lateral root germination point and lateral root (indicated by the arrow in the figure, blue). The WP transgenic plants showed no coloration at the above sites, indicating that the two-way promoter was constitutively expressed in rice roots. .
附图 l6. pSCI2与 pSCI3驱动的 Gi/S基因表达的转基因拟南芥根部的 GUS表达活 性分析。 图示说明: 左为 与 驱动的 G¾S基因表达载体的示意图, 图中 数字标示以转录起始位点为 +1, 为无启动子的空载体; 右为对应 GUS表达活性。 Figure l6. GUS expression activity analysis of transgenic Arabidopsis roots expressed by pSCI2 and pSCI3 driven Gi/S gene. Schematic description: Left is a schematic diagram of the driven G3⁄4S gene expression vector. The figure indicates that the transcription start site is +1, which is an empty vector without a promoter; the right is the corresponding GUS expression activity.
附图 Y pSCU与 pSCI3驱动的 Gt/S基因表达的转基因拟南芥叶部的 GUS表达活 性分析。 图示说明: 左为; 与 SC/3驱动的 基因表达载体的示意图, 图中 数字标示以转录起始位点为 +1, 为无启动子的空载体; 右为对应 GUS表达活性。 Figure Y GUS expression activity analysis of transgenic Arabidopsis leaves expressed by pSCU and pSCI3-driven Gt/S gene expression. Schematic description: Left is a schematic diagram of the gene expression vector driven by SC/3. The figure indicates that the transcription start site is +1, which is an empty vector without promoter; the right is the corresponding GUS expression activity.
附图 18. 双向基因启动子 pSC/2、 pSC73区域驱动的 基因在转基因拟南芥的 组织染色照片。 图示说明: 自左至右分别为无启动子 (i P)、 CaMV 35 、 pSCD 和 pSCI2驱动的 GOT基因表达的转基因拟南芥 T2代植株。 pSCI2、 pSCB转基因水稻拟 南芥在叶部和根部均有 GUS表达 (图中箭头所示, 蓝色), 转基因植株则均不显 色, 说明该双向启动子在拟南芥根部和叶部均为组成性表达。 具体实施方案 Figure 18. Tissue staining of the two-way gene promoter pSC/2, pSC73 region-driven gene in transgenic Arabidopsis thaliana. Schematic description: From left to right, transgenic Arabidopsis thaliana T2 plants expressing no promoter (i P), CaMV 35, pSCD and pSCI2 driven GOT genes. The pSCI2, pSCB transgenic rice Arabidopsis thaliana had GUS expression in the leaves and roots (arrows in the figure, blue), and the transgenic plants showed no coloration, indicating that the bidirectional promoter was found in the roots and leaves of Arabidopsis thaliana. For constitutive expression. Specific implementation
下面结合具体实施例, 进一步阐明本发明。 应理解, 这些实施例只是为了举例说 明本发明, 而非以任何方式限制本发明的范围。 在下列实施例中, 未注明具体条件的 实验方法, 通常按照常规实验方法进行, 或按照厂商所建议的操作说明进行。 The invention will be further elucidated below in conjunction with specific embodiments. It is to be understood that the examples are merely illustrative of the invention and are not intended to limit the scope of the invention. In the following examples, experimental methods which do not specify the specific conditions are usually carried out in accordance with conventional experimental methods or in accordance with the manufacturer's recommended operating instructions.
实施例 1. 稻瘟菌侵染诱导型水稻基因 cDNA的克隆 Example 1. Cloning of Rice Infectious Rice Gene Induced by Magnaporthe oryzae
为了克隆病原菌诱导性、 具有双向驱动基因表达能力的基因启动子, 本发明首 先通过负向扣除筛选 -反向 Northern确认的方法, 从稻瘟菌侵染稻叶的 cDNA文库中 筛选获得了诱导性的 cDNA克隆 1642个。具体实施为:种植水稻品种爱知旭 Oryzc sativa japonica cv. Aichisahi, 中国国家种质库统一编号: WD-11165 ), 待 4-5叶抽出 时, 一部分取健康水稻叶片, 立即液氮冷冻后保存, 按常规方法提取叶片总 RNA并 纯化 mR A (记为 HmRNA) ;另一部分活体接种稻瘟菌 P131 (Peng, Y.L. and Shishiyama, J.CanJ.Bot. 1988, 66:730-735 ) , 分别在接种后 0、 8、 24、 48、 72小时取发病叶片, 立 即液氮冷冻后保存, 分别提取叶片总 R A, 分别取各时间点适量 RNA等量混合并纯 化 mRNA (记为 PmRNA)。 同时将稻瘟菌侵染稻叶的 cDNA文库铺成单克隆平板并 印记到尼龙膜上。 cDNA文库的构建按 Stratagene公司提供的 λ ZAP express™试剂盒 说明书进行, 所用样品为稻瘟菌 P131 接种水稻品种爱知旭 0、 4、 8、 12、 24、 36、
N2006/002448 In order to clone a pathogen-inducible gene promoter capable of bidirectionally driving gene expression, the present invention firstly selects inducibility from a cDNA library of rice blast fungus infecting rice leaves by a negative subtractive screening-reverse Northern confirmation method. The cDNA clone was 1642. The specific implementation is as follows: planting rice variety Aizhixu Oryzc sativa japonica cv. Aichisahi, China National Genebank Uniform No.: WD-11165), when 4-5 leaves are taken out, part of the healthy rice leaves are taken, immediately after liquid nitrogen freezing and preservation , extracting total RNA from leaves and purifying mR A (denoted as HmRNA); another part of living organism inoculated with Magnaporthe oryzae P131 (Peng, YL and Shishiyama, J. CanJ. Bot. 1988, 66: 730-735), respectively The diseased leaves were taken at 0, 8, 24, 48, and 72 hours after inoculation. Immediately after storage, the liquid nitrogen was frozen and stored, and the total RA of the leaves was extracted. The appropriate amount of RNA was mixed and purified at each time point (recorded as PmRNA). At the same time, the cDNA library of the rice leaf infected by Magnaporthe oryzae was plated into a monoclonal plate and imprinted on a nylon membrane. The construction of the cDNA library was carried out according to the instructions of the λ ZAP expressTM kit provided by Stratagene. The sample used was inoculated with rice cultivar P131. Aichi Zhi 0, 4, 8, 12, 24, 36, N2006/002448
48、 72小时后叶片 mRNA等量混合。 用 Superscrip II反转录酶 (TaKaRa公司生产) 对 HmRNA进行放射性同位素 α-32Ρ标记, 以 α-32Ρ标记的 cDNA为探针杂交上述尼 龙膜。 杂交后挑取阴性克隆进行 PCR扩增, 扩增产物分别阵列于两张尼龙膜上。 分 别以 α-32Ρ标记的 HmRNA和 PmR A的 cDNA探针进行反向 Northern杂交 (附图 1 和附图 2)。 将仅与 PmRNA的 cDNA探针杂交为阳性的克隆 ( 1790个) 作为候选克 隆并进行测序。 实施例 2. 诱导性 cDNA序列的生物信息学分析 After 48 hours, the leaf mRNA was mixed in equal amounts. The H mRNA was subjected to radioisotope α- 32 Ρ labeling with Superscrip II reverse transcriptase (manufactured by TaKaRa Co., Ltd.), and the above nylon membrane was hybridized with α- 32 Ρ labeled cDNA as a probe. After hybridization, negative clones were picked for PCR amplification, and the amplified products were arrayed on two nylon membranes. Reverse Northern hybridization was performed with α- 32 Ρ-labeled H mRNA and PmR A cDNA probes, respectively (Fig. 1 and Fig. 2). Clones (1790) that hybridized only to the cDNA probe of P mRNA were positive as candidate clones and sequenced. Example 2. Bioinformatics analysis of inducible cDNA sequences
将经负向扣除筛选-反向 Northern确认的实施例 1中的 1790个 cDNA序列与水稻 基因组数据库 (http://ricegaas.dna.affrc.go.jp ) 进行比对分析, 结果发现其中 1642 个 序列来源于水稻。 进一步对来源于水稻的 cDNA进行相互比较、 BLAST査询和基因 组数据库分析, 发现它们分别属于 1075个独立的水稻基因。 同时发现: 两个基因与 已报道的其它生物来源的枯草杆菌蛋白酶 /胰蛋白酶抑制剂基因同源, 分别命名为 OsSci2和 OsSci3 ( GenBank登录号分别为 AY878694和 AY878695 ) ; 且这两个 cDNA 位于同一个 BAC克隆上, 两者分别以头对头方式(即 5 ' 端相对) 与一段 DNA片段 (命名为 DNA1 )的互补链匹配, 两 cDNA间相距 1152bp, 两基因所在的染色体位置 如图 3所示。 · 实施例 3. OsSci2和 OsSci3受稻瘟菌侵染诱导表达的特异性和时间动态分析。 The 1790 cDNA sequences in Example 1 subjected to negative subtractive screening-reverse Northern confirmation were compared with the rice genome database (http://ricegaas.dna.affrc.go.jp), and it was found that 1642 of them were found. The sequence is derived from rice. Further, cDNAs derived from rice were compared with each other, BLAST query and genomic database analysis, and they were found to belong to 1075 independent rice genes, respectively. At the same time, it was found that the two genes were homologous to other reported biologically derived subtilisin/trypsin inhibitor genes, and were named OsSci2 and OsSci3 (GenBank accession numbers AY878694 and AY878695, respectively); and the two cDNAs are located in the same On a BAC clone, the two were matched in a head-to-head manner (ie, 5' end relative) to a complementary strand of a DNA fragment (designated DNA1), and the two cDNAs were 1152 bp apart. The chromosomal positions of the two genes are shown in Figure 3. . · Example 3. Specific and temporal dynamic analysis of OsSci2 and OsSci3 induced expression by rice blast fungus infection.
采用 Northern blot分析 OsSci2和 OsSciS受稻瘟菌侵染诱导表达特性和时间动 态。 具体实施方法为: 种植水稻品种爱知旭, 待 4-5叶抽出时, 一部分水稻叶片活体 接种稻瘟菌亲和性小种 007(Peng, Y.L. and Shishiyama, Can.J.Bot. 1988, 66:730-735 ) , 另一部分活体接种稻瘟菌小种 P131, 分别在接种后 0、 8、 24、 48、 72小时取发病叶 片, 立即液氮冷冻后保存, 提取总 RNA。 按 《分子克隆》 (Sambrook et al, 1998 ) 的 方法进行并行凝胶电泳,每样品上样量约为 20 μ§。杂交探针分别为放射性同位素 α-32Ρ 标记的 0SSci2和 OsSci3的编码区。杂交后按常规方法洗膜、压磷屏, 并在 Cyclone™ 磷屏扫描系统成像 (PeridnElmer公司生产), 结果如图 3所示。 结果表明: C¾¾ 2和 OsSci3的诱导表达无小种特异性, 且两基因表达的时间动态相似: 均在接种后 8小时 开始表达, 到 48小时达到髙峰。
实施例 4. 双向启动子 pSCI2和 pSCI3及其与内含子相连的双向启动子 pSCI2+I和 的克隆 Northern blot analysis was used to analyze the expression characteristics and time dynamics of OsSci2 and OsSciS induced by Magnaporthe oryzae. The specific implementation method is as follows: Planting rice variety Aizhixu, when 4-5 leaves are extracted, part of the rice leaves are inoculated with the rice cultivar affinity 007 (Peng, YL and Shishiyama, Can. J. Bot. 1988, 66). : 730-735 ) , Another part of the living body was inoculated with the rice cultivar P131, and the leaves were taken at 0, 8, 24, 48, and 72 hours after inoculation. Immediately after storage, the liquid nitrogen was frozen and the total RNA was extracted. Parallel gel electrophoresis was performed as described in Molecular Cloning (Sambrook et al, 1998) with a sample loading of approximately 20 μ § per sample. The hybridization probes are the coding regions of the 0 S Sci2 and OsSci3 labeled with the radioisotope α- 32分别, respectively. After hybridization, the membrane was washed, pressed, and imaged in a CycloneTM phosphor screen scanning system (PeridnElmer). The results are shown in FIG. The results showed that the induced expression of C3⁄43⁄4 2 and OsSci3 had no race specificity, and the time dynamics of expression of the two genes were similar: all began to express at 8 hours after inoculation, reaching a peak at 48 hours. Example 4. Cloning of the bidirectional promoter pSCI2 and pSCI3 and its bidirectional promoter pSCI2+I and its intron
根据生物信息学分析的结果, 在水稻基因组中, 这两个基因分别位于同一 DNA 片段互补链上并以头对头方式分布, 两 cDNA间相距 1152bp, 且两基因的 5'非翻译 区均含有一内含子。 首先根据基因组序列设计特异引物对 pSCI2+I ( SEQ ID NO-.18, 19) 和 pSCI3+I ( SEQ ID NO:25 , 26), 扩增水稻品种爱知旭的基因组 DNA。 PCR反 应条件为: 94 4分钟; 94 °C 30秒, 58 Ό 30秒, 72 2分钟, 30个循环; 72 10 分钟。 扩增片段经克隆到 PMD-18T载体(TaKaRa公司生产)并测序, 获得了如序列 表 SEQ ID N0.3和 SEQ ID N0.4所示的 DNA片段的核苷酸序列。 在此基础上, 设计 引物对 pSCI2 ( SEQ ID NO:18 , 20) 和 pSCI3 ( SEQ ID O:25 , 27) , 以上述克隆的 片段为模板进行扩增, PCR反应条件为: 94°C 4分钟; 94Ό 30秒, 55Ό 30秒, 72 V L5分钟, 30个循环; 72°C 10分钟。 扩增产物克隆到 pMD-18T载体并测序确认, 获得如序列表 SEQ ID N0.1和 SEQ ID N0.2所示的 DNA序列。 实施例 5. 稻瘟菌侵染诱导性双向基因启动子的一系列衍生变体的获得。 According to the results of bioinformatics analysis, in the rice genome, the two genes are located on the complementary strand of the same DNA fragment and distributed in a head-to-head manner. The two cDNAs are 1152 bp apart, and the 5' untranslated regions of both genes contain one. Intron. First, a specific primer pair pSCI2+I (SEQ ID NO-.18, 19) and pSCI3+I (SEQ ID NO: 25, 26) were designed based on the genomic sequence to amplify the genomic DNA of the rice variety Aizhixu. The PCR reaction conditions were: 94 4 minutes; 94 °C 30 seconds, 58 Ό 30 seconds, 72 2 minutes, 30 cycles; 72 10 minutes. The amplified fragment was cloned into a PMD-18T vector (manufactured by TaKaRa Co., Ltd.) and sequenced, and a nucleotide sequence of the DNA fragment shown in SEQ ID NO: 0.3 and SEQ ID N0.4 of the Sequence Listing was obtained. On this basis, primer pairs pSCI2 (SEQ ID NO: 18, 20) and pSCI3 (SEQ ID O: 25, 27) were designed and amplified using the above cloned fragment as a template. The PCR reaction conditions were: 94 ° C 4 Minutes; 94Ό 30 seconds, 55Ό 30 seconds, 72 V L5 minutes, 30 cycles; 72°C for 10 minutes. The amplified product was cloned into the pMD-18T vector and confirmed by sequencing to obtain a DNA sequence as shown in SEQ ID NO: 0.1 and SEQ ID NO. Example 5. Acquisition of a series of derived variants of the rice blast fungus inducible bidirectional gene promoter.
对上述克隆的稻瘟菌侵染诱导性双向基因启动子;^ CJ2和;^ 序列进行数据库 (PlantProm DB: http://mendel.cs.rhul.ac.uk 或 http:〃 www, softberry. com/)检索和软件 分析 (http:〃 www.dna.affrc.go.ip/PLACE/和 http:〃 sphinx.mg.ac.be: 8080/ plant CARE/) , 推测其潜在的顺式元件位置, 然后在这些位置之前设计携带合适酶切位点的 PCR引物 (附图 7, SEQ ID NO:21、 20, SEQ ID NO:22、 20, SEQ ID NO:23、 20, SEQ ID NO:24、 20, SEQ ID NO:28、 27, SEQ ID NO:29、 27, SEQ ID NO :30 ^ 27), 以克隆的原始序 列(SEQ ID NO:l )为模板扩增(PCR反应条件为: 94°C 4分钟; 94°C 30秒, 55 30 秒, 72°C 1.5分钟, 30个循环; 72ΧΠ0分钟。)出 5'端上游调控片段的一系列衍生变体, 扩增产物分别克隆到 PMD-18T载体并测序确认。最终得到; +I、pSCI2-l、pSCI2-2、 pSCI2-3、 pSCI2-4、 pSCI3 +I、 pSCB- pSCI3-2 SCI3-3及 pSCU和 pSCI3 (参见附 图 5 )。 实施例 6. 稻瘟菌侵染诱导性双向基因启动子 pSCI2和 pSCI3及其一系列衍生变体与 GMS基因嵌合的双元载体构建。 The above-mentioned cloned rice blast fungus-inducible bidirectional gene promoter; ^ CJ2 and ; ^ sequence database (PlantProm DB: http://mendel.cs.rhul.ac.uk or http:〃 www, softberry.com /) Search and software analysis (http: 〃 www.dna.affrc.go.ip/PLACE/ and http:〃 sphinx.mg.ac.be: 8080/ plant CARE/), speculating on the potential cis component position, PCR primers carrying appropriate restriction sites are then designed before these positions (Fig. 7, SEQ ID NO: 21, 20, SEQ ID NO: 22, 20, SEQ ID NO: 23, 20, SEQ ID NO: 24, 20, SEQ ID NO: 28, 27, SEQ ID NO: 29, 27, SEQ ID NO: 30 ^ 27), using the cloned original sequence (SEQ ID NO: 1) as a template for amplification (PCR reaction conditions are: 94 °C 4 minutes; 94°C 30 seconds, 55 30 seconds, 72°C 1.5 minutes, 30 cycles; 72ΧΠ0 minutes.) A series of derived variants of the 5' upstream regulatory fragment, cloned into PMD The -18T vector was confirmed by sequencing. Finally obtained; +I, pSCI2-l, pSCI2-2, pSCI2-3, pSCI2-4, pSCI3 + I, pSCB- pSCI3-2 SCI3-3 and pSCU and pSCI3 (see Figure 5). Example 6. Construction of a binary vector in which a rice blast fungus-inducible bidirectional gene promoter pSCI2 and pSCI3 and a series of derived variants thereof were fused to a GMS gene.
上述克隆到 pMD-18T载体上的稻瘟菌侵染诱导性双向基因启动子 PSCI2 和
pSCB及其一系列衍生变体在其 5,端均含有 EcoRL位点,在其 3,端均含 Ncol位点(图 5)。 因此, 分别对双元载体 pCAMBIA1301 ( CAMBIA公司产品)和克隆到 pMD-18T 上的衍生变体用限制性内切酶 EcoRI和 Ncol进行双酶切。 两组双酶切后的产物经葡 聚糖凝胶电泳分开后, 切取目标 DNA片段的凝胶块, 分别用回收试剂盒 (北京赛百 盛公司生产) 回收: (1 ) 双元载体 pCAMBIA1301缺失 35S启动子的剩余部分, (2) PMD-18T载体切出的 pSCI2和 pSCI3及其衍生变体部分。 最后按一定比例分别将回 收的 (1 ) (2) 两部分混合并用 T4DNA连接酶连接, 连接产物转化大肠杆菌 DH5a 菌株, 并经酶切鉴定和测序确认。 这样获得的启动子和衍生变体为: pSCI2、 pSCI3、 pSCI2+I、 pSCI3+I、 pSCI2-l、 pSCI2-2、 pSCI2-3、 pSCI2-4、 pSCI3-l、 pSCI-2和 pSCI-3 (见附图 8, 9, 10, 11和 12的左图)。 为获得衍生变体 ?SC/SP2和^ 分别 在;? SC/2和;^ C/3基础上, 利用限制性内切酶 酶切、 回收大片段, 自连 (见附 图 13左图)。 实施例 7. 双向基因启动子 pSCI2和 pSCI3及其一系列衍生变体与 基因表达双元 载体转化水稻。 The above-mentioned rice blast fungus-inducible bidirectional gene promoter PSCI2 cloned into the pMD-18T vector pSCB and its series of derived variants contain an EcoRL site at its 5' terminus and an Ncol site at its 3' terminus (Fig. 5). Therefore, the binary vector pCAMBIA1301 (product of CAMBIA) and the derivative variant cloned into pMD-18T were digested with restriction enzymes EcoRI and Ncol, respectively. After the double-digested products were separated by Sephadex electrophoresis, the gel fragments of the target DNA fragments were excised and recovered by a recovery kit (produced by Beijing Saibaisheng Co., Ltd.): (1) The binary vector pCAMBIA1301 was deleted 35S The remainder of the promoter, (2) pSCI2 and pSCI3 and its derived variants were excised from the PMD-18T vector. Finally, the recovered (1) (2) parts were mixed and bound with T4 DNA ligase according to a certain ratio, and the ligated product was transformed into E. coli DH5a strain, and confirmed by enzyme digestion and sequencing. The promoters and derived variants thus obtained are: pSCI2, pSCI3, pSCI2+I, pSCI3+I, pSCI2-l, pSCI2-2, pSCI2-3, pSCI2-4, pSCI3-l, pSCI-2 and pSCI-3 (See Figures 8, 9, 10, 11 and 12 on the left). In order to obtain derivative variants, SC/SP2 and ^, respectively, based on ; SC/2 and ; C / 3, respectively, using restriction endonuclease digestion, recovery of large fragments, self-ligation (see Figure 13 left) . Example 7. Two-way gene promoters pSCI2 and pSCI3 and a series of derived variants thereof and gene expression binary vectors were transformed into rice.
1.双元载体转化根癌农杆菌 1. A binary vector transformed into Agrobacterium tumefaciens
分别将上述双元载体质粒 DNA用电激法导入农杆菌菌株 EHA105(E. Hood, et al, 1993, Transgen. Res. 2:208-218, 可从 CAMBIA获得) 的感受态细胞 (感受态细胞的 制备和电激转化按 《分子克隆》 (Sambrook et al, 1998) 的方法进行), 28'C培养到形 成单菌落。 挑取转化的农杆菌接种于含 5(^g/ml Kanamycin的 YM液体培养基中, 28 Ό , 220rpm摇培 16hr, 直接对菌液进行上述 PCR鉴定。 The above binary vector plasmid DNA was separately introduced into competent cells (competent cells) of Agrobacterium strain EHA105 (E. Hood, et al, 1993, Transgen. Res. 2: 208-218, available from CAMBIA) by electroporation. The preparation and electroporation were carried out according to the method of Molecular Cloning (Sambrook et al, 1998), and cultured at 28'C to form a single colony. The transformed Agrobacterium was inoculated into YM liquid medium containing 5 (^g/ml Kanamycin, 28 Ό, shaken at 220 rpm for 16 hr, and the above liquid was directly subjected to the above PCR identification.
2.根癌农杆菌介导的水稻转化 2. Agrobacterium tumefaciens-mediated rice transformation
根癌农杆菌介导的水稻转化按 Hiei 等的方法进行 (Hiei 等, Plant Mol. Biol.,1997,35:205~218 ) o 具体为: 准备水稻未成熟种子, 经表面消毒后挤出水稻幼胚 置于固体诱导培养基上, 暗培养诱导愈伤组织。 约 5-7天后剥下愈伤组织, 转入新鲜 配置的继代培养基上, 在相同条件下继代培养 5天左右; 或者准备水稻成熟胚愈伤组 织, 挑选继代培养 5-7天, 色泽淡黄的愈伤组织共培养。 挑选状态较好的愈伤组织与 适量转化的农杆菌悬浮液 (OD 0.3-0.5 )共培养 15-20分钟, 转入固体人工培养基上, 26°C黑暗培养 2-3天。 将共培养后的愈伤组织放在含有 50mg/L Hygromycin (Roche 公司生产) 的分化培养基上, 先暗培养 3天, 然后转至 15h/d光照条件上培养, 经过
15-25天左右, 长出绿点。 30-40天后进一步分化出小苗。 当抗性愈伤组织分化的芽长 至约 2cm时,将小苗移到生根培养基上,培养两周左右,在室温内移栽入土。经鉴定, 各结构获得 TO代转基因水稻株系数如表 1所示。 Agrobacterium tumefaciens-mediated transformation of rice is carried out according to the method of Hiei et al. (Hiei et al., Plant Mol. Biol., 1997, 35: 205-218) o Specifically: preparation of immature seeds of rice, surface-sterilized and extruded rice The immature embryos were placed on solid induction medium and dark cultured to induce callus. After about 5-7 days, the callus is peeled off, transferred to freshly prepared subculture medium, subcultured for about 5 days under the same conditions; or prepared for mature embryo callus of rice, and subculture is selected for 5-7 days. The yellowish calli are co-cultured. The callus with better state was selected and co-cultured with a suitable amount of transformed Agrobacterium suspension (OD 0.3-0.5) for 15-20 minutes, transferred to solid artificial medium, and cultured in the dark at 26 ° C for 2-3 days. The co-cultured callus was placed on a differentiation medium containing 50 mg/L Hygromycin (manufactured by Roche), and then cultured for 3 days in a dark state, and then transferred to a light condition of 15 h/d for culture. About 15-25 days, a green dot grows. The seedlings were further differentiated after 30-40 days. When the buds of the resistant callus differentiated to about 2 cm, the seedlings were transferred to a rooting medium, cultured for about two weeks, and transplanted into the soil at room temperature. The coefficients of the TO-transgenic rice plants obtained by each structure were identified as shown in Table 1.
表 1 不同结构获得的 TO代转基因水稻株系 Table 1 TO-transgenic rice lines obtained from different structures
实施例 8. 双向基因启动子; ?SC/2和;^ 与 Gt/S基因表达双元载体转化拟南芥。 Example 8. Two-way gene promoter; ?SC/2 and;^ and Gt/S gene expression binary vector transformation into Arabidopsis thaliana.
1.双元载体转化根癌农杆菌 1. A binary vector transformed into Agrobacterium tumefaciens
分别将双向基因启动子 ¾SC 2和;^ CZ?、 CaMV35S与 Gt/S基因表达双元载体(同实 施例 7) 用电激法导入农杆菌菌株 GV3101 (Koncz C, Schell J. 1986. Mol Gen Genet, 204:383-396,可从 GAMBIA获得)的感受态细胞(感受态细胞的制备和电激转化按《分 子克隆》 (Sambrook et al, 1998 ) 的方法进行), 28°C培养到形成单菌落。 挑取转化的 农杆菌接种于含 5(^g/ml Kanamycin的 YM液体培养基中, 28°C , 220rpm摇培 16hr, 直 接对菌液进行 PCR鉴定。 The bidirectional gene promoters 3⁄4SC 2 and ; CZ?, CaMV35S and Gt/S gene expression binary vectors (same as in Example 7) were electroporated into Agrobacterium strain GV3101 (Koncz C, Schell J. 1986. Mol Gen). Genet, 204:383-396, available from GAMBIA) Competent cells (competent cell preparation and electroporation were performed according to the method of Molecular Cloning (Sambrook et al, 1998)), cultured at 28 °C Single colony. The transformed Agrobacterium was inoculated into YM liquid medium containing 5 (^g/ml Kanamycin, shaken at 28 °C, 220 rpm for 16 hr, and the bacterial liquid was directly identified by PCR.
2. 根癌农杆菌介导的拟南芥转化 2. Agrobacterium tumefaciens-mediated transformation of Arabidopsis thaliana
拟南芥转化釆取直接浸润法。选取开花正旺的拟南芥 Arabidopsis tMiana, 生 态型 Landsberg erecta, The European Arabidopsis Stock Centre储存号为 NW20), 去掉 结英和未开花的花蕾。 PCR鉴定正确的农杆菌在 LB 液体培养基 (含 50 g/ml 的 Kanamycin和 100 g/ml的利福平)摇荡培养至 OD6(M)约为 0.6, 4000g离心收集菌体。 菌体与浸润液 (MS基本成分 +5%蔗糖, 30 μΙ/L的 Titon 100) 按 I : 1均匀混合。 混 合浸润液置于培养皿中, 将正开花的拟南芥花朵充分浸润到混合浸润液中 20-30秒, 用吸水纸吸去多余的液体,黑暗保湿 2天,转入 21 'C光照培养。成熟的转基因种子(T0
代)混收。将收获的各 T1代种子用 10倍体积的 10%次氯酸钠溶液 (含 0.1% Ttiton 100) 震荡处理 15分钟, 然后用 10倍体积的灭菌蒸馏水漂洗 10次, 均铺于含 50μ§/毫升的 潮霉素的 MS平板上, 4Ό黑暗 60小时, 转入 21 Ό光照培养。 14天后, 潮霉素抗性 植株移栽花盆, 继续培养。 种子成熟后单株收获, 得到 T1代转基因株系。 经鉴定, 各结构获得的 T1代转基因拟南芥株系数分别为: pSCU株系 24株,/ ^C 株系 18株, 0? 35S株系 16株和 WP株系 21株。 Arabidopsis thaliana transformation takes direct infiltration. Arabidopsis tMiana, the ecological Landsberg erecta, The European Arabidopsis Stock Centre (NW20), was selected to remove the knotted and unflowered flower buds. The correct Agrobacterium was identified by PCR in LB liquid medium (containing 50 g/ml Kanamycin and 100 g/ml rifampicin) to a OD 6 (M ) of about 0.6, and the cells were collected by centrifugation at 4000 g. The cells and the infiltrate (MS basic component + 5% sucrose, 30 μΙ/L of Titon 100) were uniformly mixed at 1:1. The mixed infiltrate was placed in a petri dish, and the flowering Arabidopsis flowers were fully infiltrated into the mixed infiltrate for 20-30 seconds. The excess liquid was removed by absorbent paper, moisturized for 2 days in the dark, and transferred to 21 'C light culture. . Mature genetically modified seeds (T0 Generation) mixed. The harvested T1 seeds were vortexed with 10 volumes of 10% sodium hypochlorite solution (containing 0.1% Ttiton 100) for 15 minutes, then rinsed 10 times with 10 volumes of sterile distilled water, all placed in 50 μ § / ml. On the MS plate of hygromycin, 4 Ό dark for 60 hours, transferred to 21 Ό light culture. After 14 days, the hygromycin-resistant plants were transplanted to the pots and continued to be cultured. After the seeds are mature, the individual plants are harvested, and the T1 transgenic lines are obtained. The coefficients of T1 transgenic Arabidopsis thaliana obtained by each structure were identified as follows: 24 strains of pSCU strain, 18 strains of ^ ^C strain, 16 strains of 0? 35S strain and 21 strains of WP strain.
实施例 9. 转基因水稻和拟南芥 GUS活性的鉴定及分析 Example 9. Identification and Analysis of GUS Activity in Transgenic Rice and Arabidopsis
1 . 材料的准备: 对于转基因水稻, 将收获的 TO代转基因种子 (即 T1代) 每 株系取 30〜50粒清水浸泡 48小时, 待种子萌动后转入 0.6%琼脂平板 (内含 50μ§/毫 升的潮霉素) 上发芽。 3~4天后调查种子生根情况, 并将在潮霉素板上正常生根 (即 具潮霉素抗性)的幼苗移入大田, 即为 T1代转基因苗。待 T1带幼苗长至 4叶一心时 进行处理。 处理时每个结构随机选取 10个株系, 每株系 15株苗, 分为 3组: 第一组 接种稻瘟菌菌株 007,用 0.025%的 Tween20水溶液将分生孢子制成浓度为 105/毫升的 悬浮液, 均勾喷雾于幼苗上部叶片, 接种后 27'C黑暗保湿 24小时, 之后持续光照, 至接种后 36小时,取接种叶片,液氮速冻,存于 -80Ό冰箱备用 (样品记为 Inoculation); 第二组幼苗仅喷雾 0.025%的 TWeen20 水溶液, 其它处理和取样同第一组 (样品记为 Mock); 第三组幼苗不经任何处理, 与第一、第二组同时取田间健康幼苗的上部叶片, 液氮速冻, 存于 -80Ό冰箱备用 (样品记为 untreated)。 上述样品用于 GUS表达活性 的定量分析。 GUS组织染色材料为直接选取健康幼苗的根、 茎、 叶和叶鞘。 1. Preparation of materials: For transgenic rice, the harvested TO-transgenic seeds (ie T1 generation) should be immersed in 30~50 waters per plant for 48 hours, and then transferred to 0.6% agar plates after seed germination (containing 50μ § /ml of hygromycin) on the germination. After 3 to 4 days, the seed rooting condition was investigated, and the normal rooting (ie, hygromycin-resistant) seedlings on the hygromycin plate were transferred to the field, which was the T1 generation transgenic seedling. Treat the T1 with the seedlings growing to 4 leaves and one heart. At the time of treatment, 10 lines were randomly selected for each structure, and 15 seedlings per line were divided into 3 groups: The first group was inoculated with M. oryzae strain 007, and the conidia were made to a concentration of 10 5 with 0.025% Tween 20 aqueous solution. /ml of the suspension, sprayed on the upper leaves of the seedlings, darkened for 24 hours after inoculation at 27'C, and then continued to light, 36 hours after inoculation, inoculated leaves, frozen in liquid nitrogen, stored in -80 Ό refrigerator spare (sample Recorded as Inoculation); the second group of seedlings only sprayed 0.025% T We en20 aqueous solution, the other treatment and sampling were the same as the first group (sample is Mock); the third group of seedlings without any treatment, with the first and second groups At the same time, the upper leaves of the healthy seedlings in the field were taken, frozen in liquid nitrogen, and stored in a -80 Ό refrigerator (sample is unter ea ted). The above samples were used for quantitative analysis of GUS expression activity. GUS tissue staining material is the direct selection of roots, stems, leaves and sheaths of healthy seedlings.
对于转基因拟南芥,将收获的各 T1代种子用 10倍体积的 10%次氯酸钠溶液 (含 For transgenic Arabidopsis, each harvested T1 seed is treated with 10 volumes of 10% sodium hypochlorite solution (including
0.1% Ttiton 100)震荡处理 15分钟, 然后用 10倍体积的灭菌蒸馏水漂洗 10次, 均铺 于含 50μ^毫升的潮霉素的 MS平板上, 4Ό黑暗 60小时, 转入 21 Ό光照培养。 待幼 苗长至 3-4片叶时, 小心选取叶部和根部。 每结构选取 10个株系, 每株系 20-30株。 选取的组织液氮速冻, 存于 -80°C冰箱, 用于 GUS表达活性的定量分析。 GUS组织染 色直接选取幼苗进行整株染色。 0.1% Ttiton 100) was shaken for 15 minutes, then rinsed 10 times with 10 volumes of sterile distilled water, placed on MS plates containing 50 μml of hygromycin, 4 Ό dark for 60 hours, transferred to 21 Ό light culture . When the seedlings grow to 3-4 leaves, carefully select the leaves and roots. Ten lines were selected per structure, 20-30 per line. The selected tissue liquid nitrogen was quickly frozen and stored in a -80 ° C refrigerator for quantitative analysis of GUS expression activity. GUS tissue staining directly selected seedlings for whole plant staining.
2. GUS表达活性的定量分析: GUS活性检测根据 Yang等的方法 ( Yinong Yang et al , the Plant Journal , 2000, 22(6):543-551 )。 具体为: 取待测组织在液氮中迅速研 磨至碎, 加入适量的抽提缓冲液,冰浴中磨成匀浆, 12000 g 4°C离心 10分钟; 取 5 μ1 上清加入 45 μΐ 2mM的 4-MUG(4-methyl mbeUiferyl-D-glucuronide),并快速吸取 5 μΐ 混合液加入到 ΙΟΟμΙ 0.2 Μ的 Na2C03 终止反应作为对照。 剩余混合液 37°C 保温
30min后, 吸取 5μ1加入到 ΙΟΟμΙ 0.2 Μ [的 Na2C03终止反应。 反应结束后在 TECAN GENios Plus荧光酶标仪测定产物 4-MU的荧光值。 同时, 取 5 μΐ上清按 Bradford法 利用 TECAN GENios Plus荧光酶标仪测定总蛋白含量。 然后按稀释比例折算每毫克 蛋白中每分钟所产生 4-MU的物质量,记单位为 nmol/min/mg protein,并计算 10个株 系的平均值。 结果如附图 8-13和附图 16、 Π所示。 2. Quantitative analysis of GUS expression activity: GUS activity assay was performed according to the method of Yang et al. (Yinong Yang et al, the Plant Journal, 2000, 22(6): 543-551). Specifically: take the tissue to be tested and rapidly grind it into liquid nitrogen, add appropriate amount of extraction buffer, grind into homogenate in ice bath, centrifuge at 12000 g for 10 minutes at 4 °C; take 5 μl of supernatant to add 45 μΐ 2 mM 4-MUG(4-methyl mbeUiferyl-D-glucuronide), and quickly pipet 5 μΐ of the mixture into Na 2 C0 3 of ΙΟΟμΙ 0.2 终止 to terminate the reaction as a control. Remaining mixture 37 ° C insulation After 30 min, 5 μl of the solution was added to ΙΟΟμΙ 0.2 Μ [Na 2 C0 3 to terminate the reaction. After the end of the reaction, the fluorescence value of the product 4-MU was measured on a TECAN GENios Plus fluorescent plate reader. At the same time, 5 μΐ of the supernatant was used to determine the total protein content by the Bradford method using a TECAN GENios Plus fluorescent plate reader. Then, the mass of 4-MU produced per minute per mg of protein was converted according to the dilution ratio, and the unit was nmol/min/mg protein, and the average value of 10 lines was calculated. The results are shown in Figures 8-13 and Figures 16, and Π.
根据 GUS活性的测定结果, 可以得出以下结论: 1 ) PSCI2和 pSCI3在转基因 水稻叶片中均具有很强稻瘟菌诱导性启动子活性, 其在接种稻瘟菌 36小时的活性分 别为 CaMV35S启动子的 28倍和 12倍,与 0.025% Tween水喷雾对照相比,分别增加 了约 20倍 (附图 8, 9, 10, 11和 12)。 2) 的 5'端缺失 69bp后 pSCI2-l、其 在水稻中受稻瘟菌侵染诱导的表达活性显著降低(附图 9) ; 类似地, pSCB的 5'端缺 失 98bp后 pSCI3-I 其受稻瘟菌侵染诱导的表达活性也显著降低 (附图 10)。 这一 结果说明 5'端序列是其完全启动子活性所必需的。 由于 pSCU和 pSCB为同一 DNA 片段的两条互补单链, 因此可以根据以上结果判定: ^CJ2或^ 在水稻中是具有 双向驱动基因表达能力的、在叶片中受病原菌侵染诱导性的启动子。 3 )j^C/2和 pSCJ3 在转基因拟南芥根部和叶部均具有很强组成性表达活性。 它们在根部驱动 GUS表达 的平均活性分别为 CaMV 35S的 1.7倍和 1.3倍 (附图 15 ) ; 在叶部驱动 GUS表达的 活性分别为 CaMV 35S的 4倍和 2.3倍 (附图 16)。 这一结果说明, 该双向启动子在 双子叶植物拟南芥根部和叶部可驱动目的基因强组成性表达,可用于双子叶植物的基 因工程。 4) OsSCI2和 OsSCI3基因的 5'非翻译区,其序列如 SEQ ID NO: 5和 SEQ ID NO: 6(分别含一内含子区域)所示,当将 SEQ ID NO: 5融合在 pSCU下游 (pSC/2+/)、 将 SEQ ID NO: 6融合在 pSCI3下游 ipSCI3+I、后驱动报告基因 GUS, 其受稻瘟菌 诱导表达活性均明显增强 (附图 11和附图 12)。 这一结果说明 5'非翻译区具有增强 基因表达的能力, 为增强子。 5)通过对双向基因启动子的各种衍生变体驱动 GUS基 因表达的定量分析发现: PSCI3-3转基因植株的 GUS活性显著高于 PSCI3-2转基因植 株 (附图 10), 说明 pSCU-2和 pSCB^之间存在一个正调控的顺式元件, 该元件位 于序列 SEQ ID NO: 2中从 213到 400bp之间。 6) 将 pSC (其序列如 SEQ ID NO: 1所示) 序列从 162位到 932位缺失后驱动 GUS报告基因 pSCISP2 或者将 ? (其序列如 SEQ ID NO: 2所示)序列从 162位到 932位缺失后驱动 Gt«报告基因 (PSCISP3) , 它们的转基因植株既表现了 GUS叶片组成性表达的特点, 也具有稻瘟 菌侵染诱导增强的特性(附图 13)。由于 pSCISP2和 pSCISP3的序列为反向互补序列,
所以判定: ^OS 2 p5aSP3具有双向驱动基因表达的能力, 其在水稻叶片中组成性 表达且具有病原菌侵染诱导增强的特性。 According to the results of GUS activity, the following conclusions can be drawn: 1) Both P SCI2 and pSCI3 have strong O. oxysporum-inducible promoter activity in transgenic rice leaves, and their activity in inoculation with Magnaporthe oryzae for 36 hours is CaMV35S. The promoters were 28-fold and 12-fold, respectively, by about 20-fold compared to the 0.025% Tween water spray control (Figures 8, 9, 10, 11 and 12). 2) The deletion of pSCI2-l after deletion of 69 bp at the 5' end was significantly reduced in rice induced by rice blast infection (Fig. 9); similarly, the 5' end of pSCB lacked 98 bp after pSCI3-I The expression activity induced by Magnaporthe oryzae infection was also significantly reduced (Fig. 10). This result indicates that the 5' end sequence is required for its full promoter activity. Since pSCU and pSCB are two complementary single strands of the same DNA fragment, it can be judged based on the above results: ^CJ2 or ^ is a promoter with a bidirectional driving gene expression ability in rice, which is infested by pathogens in leaves. . 3) j^C/2 and pSCJ3 have strong constitutive expression activities in roots and leaves of transgenic Arabidopsis thaliana. Their average activity in driving GUS expression at roots was 1.7-fold and 1.3-fold, respectively, of CaMV 35S (Fig. 15); the activity of driving GUS expression in leaves was 4 and 2.3 times that of CaMV 35S, respectively (Fig. 16). This result indicates that the bidirectional promoter can strongly constitutively drive the target gene in the roots and leaves of the dicotyledonous Arabidopsis thaliana, and can be used for genetic engineering of dicotyledons. 4) The 5' untranslated region of the OsSCI2 and OsSCI3 genes, the sequences of which are shown in SEQ ID NO: 5 and SEQ ID NO: 6 (containing an intron region, respectively), when SEQ ID NO: 5 is fused downstream of the pSCU (pSC/2+/), SEQ ID NO: 6 was fused to pSCI3 downstream ipSCI3+I, and post-driven reporter gene GUS, which was significantly enhanced by M. oryzae-inducible expression activity (Fig. 11 and Fig. 12). This result indicates that the 5' untranslated region has the ability to enhance gene expression as an enhancer. 5) Quantitative analysis of GUS gene expression by various derivative variants of the bidirectional gene promoter revealed that the GUS activity of PSCI3-3 transgenic plants was significantly higher than that of PSCI3-2 transgenic plants (Fig. 10), indicating pSCU-2 and There is a positively regulated cis element between pSCB^ which is between 213 and 400 bp in sequence SEQ ID NO: 2. 6) The deletion of the sequence of pSC (shown as SEQ ID NO: 1) from position 162 to position 932 drives the GUS reporter gene pSCISP2 or the sequence of ? (the sequence of which is shown in SEQ ID NO: 2) from position 162 to The 932 deletion drives the Gt« reporter gene ( P SCISP3), and their transgenic plants both express the constitutive expression of GUS leaves and the enhanced induction of M. infestans infection (Fig. 13). Since the sequences of pSCISP2 and pSCISP3 are reverse complementary sequences, Therefore, it was judged that: ^OS 2 p5aSP3 has the ability to drive gene expression in both directions, which is constitutively expressed in rice leaves and has the characteristic of enhancing the infection of pathogenic bacteria.
3. GUS组织染色: GUS组织染色法按 Jefferson等的方法迸行(Jefferson, et al., EMBO J., 1987, 6: 3901-3907), 首先将选取的转基因材料进行无菌水表面清洗, 用 无菌吸水纸吸干后浸入 GUS染色液, 抽气 5分钟后放 28°C , 200rpm摇床上反应 30 分钟到过夜, 然后在 70%或 100%的乙醇内脱色漂冼至显色。 结果表明: 双向基因启 动子及其衍生变体均可驱动 基因在转基因水稻叶部受稻瘟菌侵染诱导表达 (附 图 14), 而在健康转基因水稻根部呈组成性表达, 但表达强弱略有差异。 其在根部表 达的特征为主要在根尖分生组织和侧根萌发的部位表达 (附图 15)。 双向基因启动子 驱动 Gi/S基因在转基因拟南芥根部叶部均为组成性表达 (附图 18 ) . 实施例 10. 抗病双元载体的构建 3. GUS tissue staining: GUS tissue staining was performed according to Jefferson et al. (Jefferson, et al., EMBO J., 1987, 6: 3901-3907). The selected transgenic material was first cleaned on a sterile water surface. After blotting with sterile absorbent paper, immersed in GUS staining solution, pumping for 5 minutes, then placing at 28 ° C, shaking on a 200 rpm shaker for 30 minutes to overnight, and then bleaching in 70% or 100% ethanol to develop color. The results showed that both the bidirectional gene promoter and its derived variants could drive genes induced by rice blast fungus in the leaves of transgenic rice (Fig. 14), but constitutively expressed in the roots of healthy transgenic rice, but the expression was strong. Slightly different. Its characteristic at the root is expressed mainly in the apical meristem and lateral root germination (Fig. 15). The bidirectional gene promoter drives the Gi/S gene to be constitutively expressed in the leaves of the transgenic Arabidopsis roots (Fig. 18). Example 10. Construction of disease-resistant binary vectors
该双元载体是在实施例 4的基础上构建的。 此处仅以由 pSCI2而来的抗病双元 载体的构建过程为例, 其他一系列启动子的衍生变体均可按此法获得。将 质粒 用 BstE II酶切 6小时, 然后同 T4DNA polymerase补平, 酚仿抽提后溶于双蒸无菌水 中用 Nco l酶切, 回收载体片段, 连接将要嵌合的内源或外源基因 II, 其在 5'端可以 带有既有的或后来增加的 N^ I位点接头, 其 3'端应该是平滑末端。 为连接内源或外 源基因 I, 可将 SC 质粒用 EcoRI酶切后, 补平, 然后连入平端的目的基因, 并鉴 定连接方向。 另外, 为了可以嵌合各类基因, 可以用 和 Nco : [双酶切后补平, 连入平端的、 即将嵌合的基因 II, 并鉴定连入方向, 然后将质粒用 EcoRI酶切后, 补 平, 然后连入平端的目的基因 I (附图 6)。
This binary vector was constructed on the basis of Example 4. Here, only the construction process of the disease-resistant binary vector derived from pSCI2 is taken as an example, and other derivative variants of a series of promoters can be obtained by this method. The plasmid was digested with BstE II for 6 hours, then filled in with T4 DNA polymerase, phenol extracted and dissolved in double-distilled sterile water, digested with Nco l, and the vector fragment was recovered to link the endogenous or foreign gene to be chimeric. II, which may have an existing or later increased N^I site linker at the 5' end, and its 3' end should be a smooth end. To link the endogenous or exogenous gene I, the SC plasmid can be digested with EcoRI, filled in, then ligated into the blunt-ended gene of interest, and the direction of ligation is determined. In addition, in order to be able to chise various genes, you can use Nco: [double-enzyme-cutting, blunt-ended, ready-to-chimeric gene II, and identify the direction of ligation, and then digest the plasmid with EcoRI. Fill in, then connect to the blunt-ended gene of interest I (Figure 6).
Claims
1. 一种双向基因启动子、 其变体或其功能等价物, 所述启动子具有 SEQ ID NO:l或 SEQ ID O.-2所示的序列; 所述变体具有针对 SEQ ID NO:l所示序列中的第 162位到 932位的碱基进行一个或几个缺失、 添加、 替换或修饰而得到的序列, 或具 有针对 SEQ ID NO:2所示序列中的第 217位到 987位的碱基进行一个或几个缺失、添 加、替换或修饰而得到的序列;所述功能等价物具有 SEQ ID NO:7— 13任一个所示的 序列, 并且 5'端融合了 TATA盒。 A bidirectional gene promoter, a variant thereof, or a functional equivalent thereof, the promoter having the sequence of SEQ ID NO: 1 or SEQ ID O.-2; the variant having SEQ ID NO: 1 a sequence resulting from one or more deletions, additions, substitutions or modifications of bases 162 to 932 in the sequence shown, or having positions 217 to 987 in the sequence shown in SEQ ID NO: The base is subjected to one or several deletions, additions, substitutions or modifications; the functional equivalent has the sequence shown in any one of SEQ ID NOS: 7-13, and the TATA cassette is fused at the 5' end.
2. 权利要求 1的双向基因启动子, 其序列如 SEQ ID NO:l、 2、 3、 4、 14或 2. The bidirectional gene promoter of claim 1, the sequence of which is SEQ ID NO: 1, 2, 3, 4, 14 or
15所示。 15 is shown.
3. 一种启动子, 其具有 SEQ ID NO:7-13任一个所示的序列。 A promoter having the sequence shown in any one of SEQ ID NOS: 7-13.
4. 一种增强子, 其具有 SEQ ID NO:5、 6任一个所示的序列。 An enhancer having the sequence shown in any one of SEQ ID NOS: 5, 6.
5. 一种作为关键顺式作用元件的分离的 DNA, 其具有 SEQ ID NO:16、 17 任一个所示的序列。 5. An isolated DNA as a key cis-acting element having the sequence shown in any one of SEQ ID NOS: 16, 17.
6. 一种重组核酸序列, 其含有权利要求 1一 3任一项所述的启动子。 A recombinant nucleic acid sequence comprising the promoter of any one of claims 1 to 3.
7. 权利要求 6的重组核酸序列, 其还包含至少一种功能性内源或外源基因。, 7. The recombinant nucleic acid sequence of claim 6, further comprising at least one functional endogenous or exogenous gene. ,
8. 权利要求 7所述的重组核酸序列, 其中所述功能性内源或外源基因选自从 植物中分离的抗病基因、 防卫基因及其相关基因, 防卫过程中的关键酶类或蛋白的基 因, 具有直接或间接杀菌作用的植保素合成酶基因; 从稻瘟菌分离的无毒基因或与稻 瘟菌寄生密切相关的基因的反义 RNA, 动物或微生物中分离的具有抗病性的活性物质 的基因或合成它们的酶类的基因、 以及抗旱、 抗寒、 抗盐或抗高温的抗逆性基因。 8. The recombinant nucleic acid sequence of claim 7, wherein the functional endogenous or exogenous gene is selected from the group consisting of a disease resistance gene, a defense gene and related genes isolated from a plant, a key enzyme or protein in a defense process. Gene, a phytoalexin synthase gene having direct or indirect bactericidal action; an avirulence gene isolated from rice blast fungus or an antisense RNA of a gene closely related to rice blast fungus, an animal or a microorganism isolated from disease resistance Genes of active substances or genes that synthesize their enzymes, and stress resistance genes that are resistant to drought, cold, salt or high temperature.
9. 一种重组构建体, 其含有权利要求 6— 8任一项的重组核酸序列。 9. A recombinant construct comprising the recombinant nucleic acid sequence of any of claims 6-8.
10. 一种表达系统, 其含有权利要求 9的重组构建体。 10. An expression system comprising the recombinant construct of claim 9.
11. 权利要求 1一 3任一项所述的启动子在驱动内源或外源基因在植物中表达 方面的用途。 11. Use of a promoter according to any one of claims 1 to 3 for driving expression of an endogenous or exogenous gene in a plant.
12. 权利要求 11的应用, 其中所述植物是单子叶植物或双子叶植物。 12. The use of claim 11, wherein the plant is a monocot or a dicot.
13. 权利要求 11 的应用, 其中所述的单子叶植物是水稻, 所述的双子叶植物是 拟南芥。 13. The use of claim 11, wherein the monocot is rice and the dicot is Arabidopsis.
14.一种植物细胞, 其包含权利要求 6— 8任一项所述的重组核酸序列。
A plant cell comprising the recombinant nucleic acid sequence of any one of claims 6-8.
15.一种获得转基因植物的方法,包括将权利要求 10所述的表达系统转化植物。15. A method of obtaining a transgenic plant comprising transforming the expression system of claim 10 into a plant.
16.—种分离双向基因启动子的方法, 其包含从生物中分离表达的多个基因的 cDNA; 分析这些 cDNA在染色体上的具体位置; 从中寻找出 2个位于某一段 DNA 的相连两侧、 且转录方向相反的 cDNA; 通过转基因分析和确认所述某一段 DNA是 否为双向基因启动子。 16. A method for isolating a two-way gene promoter comprising cDNAs of a plurality of genes isolated and expressed from an organism; analyzing the specific positions of the cDNAs on the chromosome; and finding two connected sides on a piece of DNA, And the cDNA with the opposite transcription direction; by transgenic analysis and confirmation whether the DNA of a certain segment is a bidirectional gene promoter.
17. 权利要求 16的方法, 其中所述生物是水稻或拟南芥。 17. The method of claim 16 wherein the organism is rice or Arabidopsis.
18.—种分离权利要求 1一 3任一项所述的启动子的方法, 包括: (1)制备稻瘟菌 侵染的水稻 cDNA文库, 并铺板转膜; (2) 以健康稻叶的 mRNA为探针杂交, 选取未 杂交上的克隆作为候选诱导性 cDNA克隆并通过反向 Northern确认; (3)将确认的诱 导性 cDNA序列与公布的水稻基因组数据库进行比对分析,寻找以 5,端相对且与一段 DNA片段的互补链匹配的两个 cDNA; (4) 通过将所述 DNA片段与报告基因连接, 检测报告基因的表达来验证所述 DNA片段的双向基因启动子功能。
18. A method for isolating the promoter of any one of claims 1 to 3, comprising: (1) preparing a rice cDNA library infected by rice blast fungus, and plating the membrane; (2) using healthy rice leaves The mRNA is hybridized with the probe, and the unhybridized clone is selected as the candidate inducible cDNA clone and confirmed by reverse Northern; (3) the confirmed inducible cDNA sequence is compared with the published rice genome database to find 5, Two cDNAs that are opposite and matched to a complementary strand of a DNA fragment; (4) The bidirectional gene promoter function of the DNA fragment is verified by detecting the expression of the reporter gene by ligating the DNA fragment to a reporter gene.
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