WO2003038728A3 - A computer system and method using mass spectrometry data and a protein database for identifying unknown proteins - Google Patents
A computer system and method using mass spectrometry data and a protein database for identifying unknown proteins Download PDFInfo
- Publication number
- WO2003038728A3 WO2003038728A3 PCT/IB2002/004839 IB0204839W WO03038728A3 WO 2003038728 A3 WO2003038728 A3 WO 2003038728A3 IB 0204839 W IB0204839 W IB 0204839W WO 03038728 A3 WO03038728 A3 WO 03038728A3
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- proteins
- selecting
- providing
- protein
- candidate
- Prior art date
Links
Classifications
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
- G01N33/6803—General methods of protein analysis not limited to specific proteins or families of proteins
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Molecular Biology (AREA)
- Hematology (AREA)
- Chemical & Material Sciences (AREA)
- Urology & Nephrology (AREA)
- Physics & Mathematics (AREA)
- Immunology (AREA)
- Biomedical Technology (AREA)
- Biophysics (AREA)
- Food Science & Technology (AREA)
- Biotechnology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Microbiology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Cell Biology (AREA)
- Medicinal Chemistry (AREA)
- Analytical Chemistry (AREA)
- Biochemistry (AREA)
- General Health & Medical Sciences (AREA)
- General Physics & Mathematics (AREA)
- Pathology (AREA)
- Other Investigation Or Analysis Of Materials By Electrical Means (AREA)
Abstract
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
AU2002347462A AU2002347462A1 (en) | 2001-11-01 | 2002-11-01 | A computer system and method using mass spectrometry data and a protein database for identifying unknown proteins |
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
DKPA200101616 | 2001-11-01 | ||
DKPA200101616 | 2001-11-01 |
Publications (2)
Publication Number | Publication Date |
---|---|
WO2003038728A2 WO2003038728A2 (en) | 2003-05-08 |
WO2003038728A3 true WO2003038728A3 (en) | 2003-11-06 |
Family
ID=8160803
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/IB2002/004839 WO2003038728A2 (en) | 2001-11-01 | 2002-11-01 | A computer system and method using mass spectrometry data and a protein database for identifying unknown proteins |
Country Status (2)
Country | Link |
---|---|
AU (1) | AU2002347462A1 (en) |
WO (1) | WO2003038728A2 (en) |
Families Citing this family (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US6936813B2 (en) * | 2004-02-02 | 2005-08-30 | Agilent Technologies, Inc. | Dynamic library searching |
WO2006133568A1 (en) * | 2005-06-16 | 2006-12-21 | Caprion Pharmaceuticals Inc. | Virtual mass spectrometry |
JP2009516172A (en) | 2005-11-10 | 2009-04-16 | ロゼッタ インファーマティックス エルエルシー | Discover biological features using synthetic images |
KR100853786B1 (en) | 2006-07-12 | 2008-08-22 | 한국기초과학지원연구원 | A method for reconstructing protein database and a method for identifying proteins by using the same method |
CN103389335A (en) * | 2012-05-11 | 2013-11-13 | 中国科学院大连化学物理研究所 | Analysis device and method for identifying biomacromolecules |
Citations (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5538897A (en) * | 1994-03-14 | 1996-07-23 | University Of Washington | Use of mass spectrometry fragmentation patterns of peptides to identify amino acid sequences in databases |
WO2000073787A1 (en) * | 1999-05-27 | 2000-12-07 | Rockefeller University | An expert system for protein identification using mass spectrometric information combined with database searching |
WO2001057519A2 (en) * | 2000-02-07 | 2001-08-09 | MAX-PLANCK-Gesellschaft zur Förderung der Wissenschaften e.V. | Method for identifying and/or characterizing a (poly)peptide |
WO2002021139A2 (en) * | 2000-09-08 | 2002-03-14 | Oxford Glycosciences (Uk) Ltd. | Automated identification of peptides |
-
2002
- 2002-11-01 AU AU2002347462A patent/AU2002347462A1/en not_active Abandoned
- 2002-11-01 WO PCT/IB2002/004839 patent/WO2003038728A2/en not_active Application Discontinuation
Patent Citations (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5538897A (en) * | 1994-03-14 | 1996-07-23 | University Of Washington | Use of mass spectrometry fragmentation patterns of peptides to identify amino acid sequences in databases |
WO2000073787A1 (en) * | 1999-05-27 | 2000-12-07 | Rockefeller University | An expert system for protein identification using mass spectrometric information combined with database searching |
WO2001057519A2 (en) * | 2000-02-07 | 2001-08-09 | MAX-PLANCK-Gesellschaft zur Förderung der Wissenschaften e.V. | Method for identifying and/or characterizing a (poly)peptide |
WO2002021139A2 (en) * | 2000-09-08 | 2002-03-14 | Oxford Glycosciences (Uk) Ltd. | Automated identification of peptides |
Non-Patent Citations (9)
Title |
---|
BERNDT P ET AL: "Reliable automatic protein identification from matrix-assisted laser desorption/ionization mass spectrometric peptide fingerprints", ELECTROPHORESIS, WEINHEIM, DE, vol. 20, 18 December 1999 (1999-12-18), pages 3521 - 3526, XP002223132, ISSN: 0173-0835 * |
BREEN E J ET AL: "AUTOMATIC POISSON PEAK HARVESTING FOR HIGH THROUGHPUT PROTEIN IDENTIFICATION", ELECTROPHORESIS, VOL. 21, PAGE(S) 2243-2251, WILEY-VCH VERLAG GMBH, WEINHEIM DE,, ISSN: 0173-0835, XP001040008 * |
MARCO WEHOFSKY ET AL: "Automated deconvolution and deisotoping of electrospray mass spectra.", JOURNAL OF MASS SPECTROMETRY, vol. 37, 2002, John Wiley & Sons ltd 2002, pages 223 - 229, XP002902843 * |
MARTIN ETHIER ET AL: "Automated structural assignment of derivatized complex N-linked oligosaccharides from tandem mass spectra.", RAPID COMMUNICATIONS IN MASS SPECTROMETRY, vol. 16, 2002, 2002 John Wiley & sons ltd, pages 1743 - 1754, XP002902846 * |
OLE N JENSEN ET AL: "Delayed extraction improves specificity in database searches by matrix-assisted laser desorption / ionization peptide maps", RAPID COMMUNICATIONS IN MASS SPECTROMETRY, vol. 10, 23 July 1996 (1996-07-23), 1996 John Wiley & Sons ltd, pages 1371 - 1378, XP002902844, ISSN: 0951-4198 * |
PAPPIN D J C ET AL: "RAPID IDENTIFICATION OF PROTEINS BY PEPTIDE-MASS FINGERPRINTING.", 1993, CURRENT BIOLOGY, CURRENT SCIENCE,, GB, VOL. 3, NR. 6, PAGE(S) 327-332, ISSN: 0960-9822, XP000856937 * |
PERKINS D N ET AL: "PROBABILITY-BASED PROTEIN IDENTIFICATION BY SEARCHING SEQUENCE DATABASES USING MASS SPECTROMETRY DATA.", ELECTROPHORESIS, VOL. 20, PAGE(S) 3551-3567, WILEY-VCH VERRLAG GMBH , WEINHEIM (DE), ISSN: 0173-0835, XP001051561 * |
ROBIN GRAS ET AL: "Improving protein identification from peptide mass fingerprinting through a parameterized multi-level scoring algorithm and an optimized peak detection", ELECTROPHORESIS, vol. 20, 1999, Wiley-VCH Verlag GMBH 1999, pages 3535 - 3550, XP002902845, ISSN: 0173-0835 * |
WENZHU ZHANG ET AL: "Profound: An expert system for protein identification using mass spectrometric peptide mapping information.", ANALYTICAL CHEMISTRY, vol. 72, no. 11, 1 June 2000 (2000-06-01), pages 2482 - 2489, XP002902847 * |
Also Published As
Publication number | Publication date |
---|---|
AU2002347462A1 (en) | 2003-05-12 |
WO2003038728A2 (en) | 2003-05-08 |
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