一种新的多肽一一补体受体 12和编码这种多肽的多核苷酸 技术领域 A new polypeptide-complement receptor 12-and a polynucleotide encoding the polypeptide TECHNICAL FIELD
本发明属于生物技术领域, 具体地说, 本发明描述了一种新的多肽一一补体受 体 12, 以及编码此多肽的多核苷酸序列。 本发明还涉及此多核苷酸和多肽的制备 方法和应用。 背景技术 The present invention belongs to the field of biotechnology. Specifically, the present invention describes a novel polypeptide-complement receptor 12, and a polynucleotide sequence encoding the polypeptide. The invention also relates to a method and application for preparing such polynucleotides and polypeptides. Background technique
红细胞 补体受体 (E- CR)是一种结合并且调节 C3b/C4b免疫耐受复合体 UC) 的蛋白质, 它影响 IC的清除效率和组织沉淀,并为人类 I因子转导的卵裂提供辅 助因子 (Birmingham, D. et al 1990 FASEB J.4: 2188 ) (Hebert,L. A. et al. , 1991 Ara. J.Kidney Dis.17: 353 ) 。 因此, E- CR1系统是为 IC循环提供安全保障的重要 人的 E- CR 属于补体受体类型 I ( CR1 ) ( Fearon, D. T. et al. , 1980 J. Exp. Med.152: 20 ) 。 CR1分子是 C激活 ( RCA ) 的调节因子之一, RCA调节因子 是一群 C3b, 和 C4b结合蛋白, 它们在自己的组织和循环中调节着 RCA。 人类 CR1 表达于大多数外周血细胞中,几乎超过 85%的总循环 CR1在红细胞中(Siegel, Let al. , 1981 Lancet 2: 556 ) 。 人类 CR1是一条单链的糖蛋白, 按照分子量的大小 可以把人类 CR1蛋白分为四种同种异型, 以 A或 F为主。 相应地, CR1 转录本也 从 1.3KD到 1.5KD分为四种类型。 CR1- A型的细胞外多肽由 30个重复单位组成, 每一个重复单位包含 59-76 个氨基酸, 叫做短的共有序列重复子 SCRs ( Klickstein,L. B. et al. , 1987 J. Exp. Med.165: 1095 ) ( Hourcade, D. et al. ,1988J.Exp.Med. l68: 1255 ) 。 在所有的重复单位中, 每 7个重复单位的同源 性最大, 因此把这 7 个重复单位进一步定义为长的同源重复子 (LHRs ) 。 CR1 - A 型包含 4个 LHRs, 并且在大多数三个 N末端 LHRs中的前两个 SCRs是配体的特 异结合位点。 SCRsl和 SCRs2主要特异结合 C4b,SCRs8和 SCRs9,SCRsl5和 SCsR16 主要特异结合 C3b ( lickstein,L.B.et al. , 1988 J. Exp. Med.168: 1699 ) 。 Erythrocyte complement receptor (E-CR) is a protein that binds and regulates the C3b / C4b immune tolerance complex (UC), which affects the clearance efficiency of IC and tissue sedimentation, and provides assistance for human factor I-transduced cleavage Factor (Birmingham, D. et al 1990 FASEB J. 4: 2188) (Hebert, LA et al., 1991 Ara. J. Kidney Dis. 17: 353). Therefore, the E-CR1 system is an important person that provides safety protection for the IC cycle. E-CR belongs to complement receptor type I (CR1) (Fearon, D. T. et al., 1980 J. Exp. Med. 152: 20). The CR1 molecule is one of the regulators of C activation (RCA). RCA regulators are a group of C3b and C4b binding proteins that regulate RCA in their own tissues and circulation. Human CR1 is expressed in most peripheral blood cells, with almost more than 85% of the total circulating CR1 in red blood cells (Siegel, Let al., 1981 Lancet 2: 556). Human CR1 is a single-chain glycoprotein. According to the molecular weight, human CR1 protein can be divided into four allotypes, mainly A or F. Correspondingly, CR1 transcripts are divided into four types from 1.3KD to 1.5KD. CR1-A extracellular polypeptides consist of 30 repeat units, each repeat unit contains 59-76 amino acids, called short consensus repeats SCRs (Klickstein, LB et al., 1987 J. Exp. Med. 165 : 1095) (Hourcade, D. et al., 1988J. Exp. Med. L68: 1255). Of all the repeating units, every 7 repeating units have the highest homology, so these 7 repeating units are further defined as long homologous repeats (LHRs). The CR1-A type contains 4 LHRs, and the first two SCRs in most three N-terminal LHRs are specific binding sites for the ligand. SCRsl and SCRs2 mainly specifically combine C4b, SCRs8 and SCRs9, SCRsl5 and SCsR16 mainly specifically combine C3b (lickstein, L.B. et al., 1988 J. Exp. Med. 168: 1699).
猩猩的 E- CR1与人类 220, OOOMr CR1有 98.8%的同源性。它可能是人类 E- CR1 前体 mRNA的另一种剪接形式。猩猩 E- CR1基因编码的 8个 SCRs后是一个 24个氨 基酸的疏水区域, 该区域之后就是一个终止密码。 在 C末端疏水区域出现的这个 终止密码表明这个蛋白可能是不稳定的,尽管这 24个氨基酸序列为完整的膜粘附 提供足够的疏水区。 ( lein, P. et al. , 1985 Biochira. Biophys. Acta.815: 468 )
猩猩 E - CR1头 6. 5个 SCRs最接近于人的头 6. 5个 SCRs ( Hourcade, D. e t a l . , 1990 J. B i o l . Chem. 265: 974 ) 。 Orangutan E-CR1 has 98.8% homology with human 220, OOOMr CR1. It may be another splicing form of human E-CR1 precursor mRNA. The 8 SCRs encoded by the orangutan E-CR1 gene are followed by a 24 amino acid hydrophobic region, followed by a stop code. The presence of this stop code in the C-terminal hydrophobic region indicates that the protein may be unstable, although these 24 amino acid sequences provide sufficient hydrophobic regions for complete membrane adhesion. (lein, P. et al., 1985 Biochira. Biophys. Acta. 815: 468) Orangutan E-CR1 head 6.5 SCRs are closest to human head 6.5 SCRs (Hourcade, D. etal., 1990 J. Biol. Chem. 265: 974).
通过基因芯片的分析发现,在膀胱粘膜、 PMA+的 Ecv 304细胞株、 LPS+的 Ecv 304 细胞株胸腺、 正常成纤维细胞 1024NC、 Fi brob l a s t , 生长因子刺激, 1024NT、 疤 痕成 fc生长因子刺激, 1013HT、 疤痕成 f c未用生长因子刺激, 1 01 3HC、 膀胱癌 建株细胞 EJ、 膀胱癌旁、 膀胱癌、 肝癌、 肝癌细胞株、 胎皮、 脾脏、 前列腺癌、 空肠腺癌、 贲门癌中, 本发明的多肽的表达谱与补体受体的表达谱非常近似, 因 此二者功能也可能类似。 本发明被命名为补体受体 12。 Gene chip analysis revealed that in the bladder mucosa, PMA + Ecv 304 cell line, LPS + Ecv 304 cell line thymus, normal fibroblasts 1024NC, Fi brob last, growth factor stimulation, 1024NT, scar-forming fc growth factor stimulation, 1013HT , Scar into fc without stimulation with growth factor, 1 01 3HC, bladder cancer cell EJ, bladder cancer, bladder cancer, liver cancer, liver cancer cell line, placenta, spleen, prostate cancer, jejunum adenocarcinoma, cardia cancer, The expression profile of the polypeptide of the present invention is very similar to the expression profile of the complement receptor, so the functions of the two may also be similar. The present invention is named complement receptor 12.
由于如上所述补体受体 12蛋白在调节细胞分裂和胚胎发育等机体重要功能中 起重要作用, 而且相信这些调节过程中涉及大量的蛋白, 因而本领域中一直需要 鉴定更多参与这些过程的补体受体 12蛋白, 特别是鉴定这种蛋白的氨基酸序列。 新补体受体 12 蛋白编码基因的分离也为研究确定该蛋白在健康和疾病状态下的 作用提供了基础。 这种蛋白可能构成开发疾 1病诊断和 /或治疗药的基础, 因此分 离其编码 DNA是非常重要的。 发明的公开 As mentioned above, the complement receptor 12 protein plays an important role in regulating important functions of the body such as cell division and embryo development, and it is believed that a large number of proteins are involved in these regulatory processes, so there is always a need in the art to identify more complements that participate in these processes. Receptor 12 protein, especially the amino acid sequence of this protein is identified. Isolation of the gene encoding the new complement receptor 12 protein also provides the basis for research to determine the role of this protein in health and disease states. This protein may form the basis for the development of diagnostic and / or therapeutic drugs for diseases, so it is important to isolate its coding DNA. Disclosure of invention
本发明的一个目的是提供分离的新的多肽一一补体受体 12 以及其片段、 类似 物和衍生物。 It is an object of the present invention to provide isolated novel polypeptides-complement receptor 12 and fragments, analogs and derivatives thereof.
本发明的另一个目的是提供编码该多肽的多核苷酸。 Another object of the invention is to provide a polynucleotide encoding the polypeptide.
本发明的另一个目的是提供含有编码补体受体 12的多核苷酸的重组载体。 本发明的另一个目的是提供含有编码补体受体 12的多核苷酸的基因工程化宿 主细胞。 It is another object of the present invention to provide a recombinant vector containing a polynucleotide encoding complement receptor 12. Another object of the present invention is to provide a genetically engineered host cell containing a polynucleotide encoding complement receptor 12.
本发明的另一个目的是提供生产补体受体 12的方法。 Another object of the present invention is to provide a method for producing complement receptor 12.
本发明的另一个目的是提供针对本发明的多肽一一补体受体 12的抗体。 Another object of the present invention is to provide antibodies against the polypeptide-complement receptor 12 of the present invention.
本发明的另一个目的是提供了针对本发明多肽一一补体受体 12 的模拟化合 物、 拮抗剂、 激动剂、 抑制剂。 Another object of the present invention is to provide mimetic compounds, antagonists, agonists, and inhibitors directed to the polypeptide-complement receptor 12 of the present invention.
本发明的另一个目的是提供诊断治疗与补体受体 12异常相关的疾病的方法。 本发明涉及一种分离的多肽, 该多肽是人源的, 它包含: 具有 SEQ ID No. 2 氨基酸序列的多肽、 或其保守性变体、 生物活性片段或衍生物。 较佳地, 该多肽 是具有 SEQ ID NO: 2氨基酸序列的多肽。 Another object of the present invention is to provide a method for diagnosing and treating diseases related to abnormalities of complement receptor 12. The present invention relates to an isolated polypeptide, which is of human origin and comprises: a polypeptide having the amino acid sequence of SEQ ID No. 2, or a conservative variant, biologically active fragment or derivative thereof. Preferably, the polypeptide is a polypeptide having the amino acid sequence of SEQ ID NO: 2.
本发明还涉及一种分离的多核苷酸, 它包含选自下组的一种核苷酸序列或其 变体:
(a)编码具有 SEQ ID No. 2氨基酸序列的多肽的多核苷酸; The invention also relates to an isolated polynucleotide comprising a nucleotide sequence or a variant thereof selected from the group consisting of: (a) a polynucleotide encoding a polypeptide having the amino acid sequence of SEQ ID No. 2;
(b)与多核苷酸(a)互补的多核苷酸; (b) a polynucleotide complementary to polynucleotide (a);
(c)与(a)或(b)的多核苷酸序列具有至少 70%相同性的多核苷酸。 (c) A polynucleotide having at least 70% identity to a polynucleotide sequence of (a) or (b).
更佳地, 该多核苷酸的序列是选自下组的一种: (a)具有 SEQ ID NO: 1 中 409- 747位的序列; 和(b)具有 SEQ ID NO: 1中 1-1294位的序列。 More preferably, the sequence of the polynucleotide is one selected from the group consisting of: (a) a sequence having positions 409-747 in SEQ ID NO: 1; and (b) a sequence having 1-1294 in SEQ ID NO: 1 Sequence of bits.
本发明另外涉及一种含有本发明多核苷酸的载体, 特别是表达载体; 一种用 该载体遗传工程化的宿主细胞, 包括转化、 转导或转染的宿主细胞; 一种包括培 养所述宿主细胞和回收表达产物的制备本发明多肽的方法。 The invention further relates to a vector, in particular an expression vector, containing the polynucleotide of the invention; a host cell genetically engineered with the vector, including a transformed, transduced or transfected host cell; and a method comprising culturing said Host cell and method of preparing the polypeptide of the present invention by recovering the expression product.
本发明还涉及一种能与本发明多肽特异性结合的抗体。 The invention also relates to an antibody capable of specifically binding to a polypeptide of the invention.
本发明还涉及一种筛选的模拟、 激活、 拮抗或抑制补体受体 12蛋白活性的化 合物的方法, 其包括利用本发明的多肽。 本发明还涉及用该方法获得的化合物。 The invention also relates to a method for screening compounds that mimic, activate, antagonize or inhibit complement receptor 12 protein activity, which comprises utilizing the polypeptide of the invention. The invention also relates to compounds obtained by this method.
本发明还涉及一种体外检测与补体受体 12 蛋白异常表达相关的疾病或疾病易 感性的方法, 包括检测生物样品中所述多肽或其编码多核苷酸序列中的突变, 或者 检测生物样品中本发明多肽的量或生物活性。 The invention also relates to a method for detecting a disease or disease susceptibility related to abnormal expression of complement receptor 12 protein in vitro, which comprises detecting a mutation in the polypeptide or a polynucleotide sequence encoding the same in a biological sample, or detecting a mutation in a biological sample. The amount or biological activity of a polypeptide of the invention.
本发明也涉及一种药物组合物, 它含有本发明多肽或其模拟物、 激活剂、 拮抗 剂或抑制剂以及药学上可接受的载体。 The present invention also relates to a pharmaceutical composition comprising a polypeptide of the present invention or a mimetic thereof, an activator, an antagonist or an inhibitor, and a pharmaceutically acceptable carrier.
本发明还涉及本发明的多肽和 /或多核苷酸在制备用于治疗癌症、发育性疾病 或免疫性疾病或其它由于补体受体 12表达异常所引起疾病的药物的用途。 The present invention also relates to the use of the polypeptide and / or polynucleotide of the present invention in the preparation of a medicament for treating cancer, developmental disease or immune disease or other diseases caused by abnormal expression of complement receptor 12.
本发明的其它方面由于本文的技术的公开, 对本领域的技术人员而言是显而易 见的。 Other aspects of the invention will be apparent to those skilled in the art from the disclosure of the techniques herein.
本说明书和权利要求书中使用的下列术语除非特别说明具有如下的含义: "核酸序列" 是指寡核苷酸、 核苷酸或多核苷酸及其片段或部分, 也可以指基 因组或合成的 DNA或 RNA , 它们可以是单链或双链的, 代表有义链或反义链。 类似 地, 术语 "氨基酸序列" 是指寡肽、 肽、 多肽或蛋白质序列及其片段或部分。 当 本发明中的 "氨基酸序列" 涉及一种天然存在的蛋白质分子的氨基酸序列时, 这 种 "多肽" 或 "蛋白质" 不意味着将氨基酸序列限制为与所述蛋白质分子相关的 完整的天然氨基酸。 The following terms used in this specification and claims have the following meanings unless specifically stated: "Nucleic acid sequence" refers to an oligonucleotide, a nucleotide or a polynucleotide and a fragment or part thereof, and may also refer to a genomic or synthetic DNA or RNA, they can be single-stranded or double-stranded, representing the sense or antisense strand. Similarly, the term "amino acid sequence" refers to an oligopeptide, peptide, polypeptide or protein sequence and fragments or portions thereof. When the "amino acid sequence" in the present invention relates to the amino acid sequence of a naturally occurring protein molecule, such "polypeptide" or "protein" does not mean to limit the amino acid sequence to a complete natural amino acid related to the protein molecule .
蛋白质或多核苷酸 "变体" 是指一种具有一个或多个氨基酸或核苷酸改变的 氨基酸序列或编码它的多核苷酸序列。 所述改变可包括氨基酸序列或核苷酸序列 中氨基酸或核苷酸的缺失、 插入或替换。 变体可具有 "保守性" 改变, 其中替换 的氨基酸具有与原氨基酸相类似的结构或化学性质, 如用亮氨酸替换异亮氨酸。 变体也可具有非保守性改变, 如用色氨酸替换甘氨酸。
"缺失" 是指在氨基酸序列或核苷酸序列中一个或多个氨基酸或核苷酸的缺 失。 A protein or polynucleotide "variant" refers to an amino acid sequence having one or more amino acids or nucleotide changes, or a polynucleotide sequence encoding it. The changes may include deletions, insertions or substitutions of amino acids or nucleotides in the amino acid sequence or nucleotide sequence. Variants may have "conservative" changes in which the substituted amino acid has a structural or chemical property similar to the original amino acid, such as replacing isoleucine with leucine. Variants can also have non-conservative changes, such as replacing glycine with tryptophan. "Deletion" refers to the deletion of one or more amino acids or nucleotides in an amino acid sequence or nucleotide sequence.
"插入" 或 "添加" 是指在氨基酸序列或核苷酸序列中的改变导致与天然存在的 分子相比, 一个或多个氨基酸或核苷酸的增加。 "替换" 是指由不同的氨基酸或核苷 酸替换一个或多个氨基酸或核苷酸。 "Insertion" or "addition" refers to an alteration in the amino acid sequence or nucleotide sequence that results in an increase in one or more amino acids or nucleotides compared to a naturally occurring molecule. "Replacement" refers to the replacement of one or more amino acids or nucleotides with different amino acids or nucleotides.
"生物活性" 是指具有天然分子的结构、 调控或生物化学功能的蛋白质。 类似地, 术语 "免疫学活性"是指天然的、 重组的或合成蛋白质及其片段在合适的动物或细胞 中诱导特定免疫反应以及与特异性抗体结合的能力。 "Biological activity" refers to a protein that has the structure, regulation, or biochemical function of a natural molecule. Similarly, the term "immunologically active" refers to the ability of natural, recombinant, or synthetic proteins and fragments thereof to induce a specific immune response and to bind specific antibodies in a suitable animal or cell.
"激动剂"是指当与补体受体 12结合时,一种可引起该蛋白质改变从而调节该 蛋白质活性的分子。 激动剂可以包括蛋白质、 核酸、 碳水化合物或任何其它可结 合补体受体 12的分子。 An "agonist" refers to a molecule that, when bound to complement receptor 12, causes a change in the protein to regulate the activity of the protein. An agonist may include a protein, a nucleic acid, a carbohydrate, or any other molecule that can bind the complement receptor 12.
"拮抗剂" 或 "抑制物"是指当与补体受体 12结合时, 一种可封闭或调节补体 受体 12的生物学活性或免疫学活性的分子。 拮抗剂和抑制物可以包括蛋白质、 核 酸、 碳水化合物或任何其它可结合补体受体 12的分子。 An "antagonist" or "inhibitor" refers to a molecule that, when bound to complement receptor 12, can block or modulate the biological or immunological activity of complement receptor 12. Antagonists and inhibitors may include proteins, nucleic acids, carbohydrates or any other molecule that can bind complement receptor 12.
"调节"是指补体受体 12的功能发生改变, 包括蛋白质活性的升高或降低、 结 合特性的改变及补体受体 12的任何其它生物学性质、 功能或免疫性质的改变。 "Regulation" refers to a change in the function of complement receptor 12, including an increase or decrease in protein activity, a change in binding properties, and any other biological, functional, or immune properties of complement receptor 12.
"基本上纯' '是指基本上不含天然与其相关的其它蛋白、 脂类、 糖类或其它物质。 本领域的技术人员能用标准的蛋白质纯化技术纯化补体受体 12。 基本上纯的补体受 体 12在非还原性聚丙烯酰胺凝胶上能产生单一的主带。补体受体 12多肽的纯度可用 氨基酸序列分析。 "Substantially pure '" means substantially free of other proteins, lipids, sugars or other substances with which it is naturally associated. Those skilled in the art can purify complement receptor 12 using standard protein purification techniques. Substantially pure Complement receptor 12 can generate a single main band on a non-reducing polyacrylamide gel. The purity of complement receptor 12 polypeptide can be analyzed by amino acid sequence.
"互补的"或 "互补"是指在允许的盐浓度和温度条件下通过碱基配对的多核 苷酸天然结合。 例如, 序列 "C- T-G- A" 可与互补的序列 "G- A- C- T" 结合。 两个 单链分子之间的互补可以是部分的或全部的。 核酸链之间的互补程度对于核酸链 之间杂交的效率及强度有明显影响。 "Complementary" or "complementary" refers to the natural binding of a nucleotide by base-pairing under conditions of acceptable salt concentration and temperature. For example, the sequence "C-T-G-A" can be combined with the complementary sequence "G-A-C-T". The complementarity between two single-stranded molecules may be partial or complete. The degree of complementarity between nucleic acid strands has a significant effect on the efficiency and strength of hybridization between nucleic acid strands.
"同源性"是指互补的程度, 可以是部分同源或完全同源。 "部分同源"是指 一种部分互补的序列, 其至少可部分抑制完全互补的序列与靶核酸的杂交。 这种 杂交的抑制可通过在严格性程度降低的条件下进行杂交 ( Sou thern印迹或 Nor thern印迹等) 来检测。 基本上同源的序列或杂交探针可竟争和抑制完全同源 的序列与靶序列在的严格性程度降低的条件下的结合。 这并不意味严格性程度降 低的条件允许非特异性结合, 因为严格性程度降低的条件要求两条序列相互的结 合为特异性或选择性相互作用。 "Homology" refers to the degree of complementarity and can be partially homologous or completely homologous. "Partial homology" refers to a partially complementary sequence that at least partially inhibits hybridization of a fully complementary sequence to a target nucleic acid. This inhibition of hybridization can be detected by performing hybridization (Sou thern blot or Nor thern blot, etc.) under conditions of reduced stringency. Substantially homologous sequences or hybridization probes can compete and inhibit the binding of completely homologous sequences to the target sequence under conditions of reduced stringency. This does not mean that the conditions of reduced stringency allow non-specific binding, because the conditions of reduced stringency require that the two sequences be combined with each other as a specific or selective interaction.
"相同性百分率"是指在两种或多种氨基酸或核酸序列比较中序列相同或相似
的百分率。 可用电子方法测定相同性百分率, 如通过 MEGALIGN程序 (Lasergene sof tware package, DNASTAR, Inc. , Madi son Wi s. )。 MEGALIGN程序可根据不同 的方法如 Clus ter法比较两种或多种序列(Higg ins, D. G. 和 P. M. Sharp (1988) Gene 73: 237-244) 0 Clus ter法通过检查所有配对之间的距离将各组序列排列成 簇。 然后将各簇以成对或成组分配。 两个氨基酸序列如序列 A和序列 B之间的相同 性百分率通过下式计算: "Percent identity" means the sequence is the same or similar in the comparison of two or more amino acid or nucleic acid sequences Percentage. The percent identity can be determined electronically, such as by the MEGALIGN program (Lasergene sof tware package, DNASTAR, Inc., Madi son Wis.). The MEGALIGN program can compare two or more sequences based on different methods such as the Clus ter method (Higg ins, DG and PM Sharp (1988) Gene 73: 237-244). 0 The Clus ter method compares each pair by checking the distance between all pairs. Group sequences are arranged in clusters. The clusters are then assigned in pairs or groups. The percent identity between two amino acid sequences such as sequence A and sequence B is calculated by the following formula:
序列 A与序列 B之间匹配的残基个数 X 100 序列 A的残基数一序列 A中间隔残基数一序列 B中间隔残基数 Number of residues matching between sequence A and sequence X 100 Number of residues in sequence A-number of interval residues in sequence A-number of interval residues in sequence B
也可以通过 Clus ter法或用本领域周知的方法如 Jotun He in 测定核酸序列之 间的相同性百分率(He in J. , (1990) Methods in emzumo logy 183: 625-645) 0 May be measured as Jotun He in the percentage of identity between nucleic acid sequences Clus ter or a method well known in the art (He in J., (1990) Methods in emzumo logy 183: 625-645) 0
"相似性 " 是指氨基酸序列之间排列对比时相应位置氨基酸残基的相同或保 守性取代的程度。 用于保守性取代的氨基酸例如, 带负电荷的氨基酸可包括天冬 氨酸和谷氨酸; 带正电荷的氨基酸可包括赖氨酸和精氨酸; 具有不带电荷的头部 基团有相似亲水性的氨基酸可包括亮氨酸、 异亮氨酸和缬氨酸; 甘氨酸和丙氨酸; 天冬酰胺和谷氨酰胺; 丝氨酸和苏氨酸; 苯丙氨酸和酪氨酸。 "Similarity" refers to the degree of identical or conservative substitutions of amino acid residues at corresponding positions in the alignment of amino acid sequences. Amino acids used for conservative substitutions, for example, negatively charged amino acids may include aspartic acid and glutamic acid; positively charged amino acids may include lysine and arginine; having an uncharged head group is Similar hydrophilic amino acids may include leucine, isoleucine and valine; glycine and alanine; asparagine and glutamine; serine and threonine; phenylalanine and tyrosine.
"反义"是指与特定的 DNA或 RNA序列互补的核苷酸序列。 "反义链"是指与 "有 义链" 互补的核酸链。 "Antisense" refers to a nucleotide sequence that is complementary to a particular DNA or RNA sequence. The "antisense strand" refers to a nucleic acid strand that is complementary to the "sense strand".
"衍生物" 是指 HFP或编码其的核酸的化学修饰物。 这种化学修饰物可以是用 烷基、 酰基或氨基替换氢原子。 核酸衍生物可编码保留天然分子的主要生物学特 性的多肽。 "Derivative" refers to a chemical modification of HFP or a nucleic acid encoding it. Such a chemical modification may be the replacement of a hydrogen atom with an alkyl group, an acyl group or an amino group. Nucleic acid derivatives can encode polypeptides that retain the main biological characteristics of natural molecules.
"抗体" 是指完整的抗体分子及其片段, 如 Fa、 F (ab') 2及 Fv, 其能特异性结 合补体受体 12的抗原决定簇。 "Antibody" refers to a complete antibody molecule and its fragments, such as Fa, F (ab ') 2 and Fv, which can specifically bind to the epitope of complement receptor 12.
"人源化抗体" 是指非抗原结合区域的氨基酸序列被替换变得与人抗体更为 相似, 但仍保留原始结合活性的抗体。 A "humanized antibody" refers to an antibody in which the amino acid sequence of a non-antigen binding region is replaced to become more similar to a human antibody, but still retains the original binding activity.
"分离的" 一词指将物质从它原来的环境(例如, 若是自然产生的就指其天然 环境) 之中移出。 比如说, 一个自然产生的多核苷酸或多肽存在于活动物中就是 没有被分离出来, 但同样的多核苷酸或多肽同一些或全部在自然系统中与之共存 的物质分开就是分离的。 这样的多核苷酸可能是某一载体的一部分, 也可能这样 的多核苷酸或多肽是某一组合物的一部分。 既然载体或组合物不是它天然环境的 成分, 它们仍然是分离的。 The term "isolated" refers to the removal of a substance from its original environment (for example, its natural environment if it occurs naturally). For example, a naturally occurring polynucleotide or polypeptide is not isolated when it is present in a living animal, but the same polynucleotide or polypeptide is separated from some or all of the substances that coexist with it in the natural system. Such a polynucleotide may be part of a vector, or such a polynucleotide or polypeptide may be part of a composition. Since the carrier or composition is not part of its natural environment, they are still isolated.
如本发明所用, "分离的" 是指物质从其原始环境中分离出来 (如果是天然
的物质, 原始环境即是天然环境) 。 如活体细胞内的天然状态下的多聚核苷酸和 多肽是没有分离纯化的, 但同样的多聚核苷酸或多肽如从天然状态中同存在的其 他物质中分开, 则为分离纯化的。 As used herein, "isolated" refers to the separation of a substance from its original environment (if natural Material, the original environment is the natural environment). For example, polynucleotides and polypeptides in a natural state in a living cell are not isolated and purified, but the same polynucleotides or polypeptides are separated and purified if they are separated from other substances existing in the natural state. .
如本文所用, "分离的补体受体 12"是指补体受体 12基本上不含天然与其相 关的其它蛋白、 脂类、 糖类或其它物质。 本领域的技术人员能用标准的蛋白质纯 化技术纯化补体受体 12。 基本上纯的多肽在非还原聚丙烯酰胺凝胶上能产生单一 的主带。 补体受体 12多肽的纯度能用氨基酸序列分析。 As used herein, "isolated complement receptor 12" means that complement receptor 12 is substantially free of other proteins, lipids, carbohydrates, or other substances with which it is naturally associated. Those skilled in the art can purify complement receptor 12 using standard protein purification techniques. Substantially pure polypeptides can produce a single main band on a non-reducing polyacrylamide gel. The purity of the complement receptor 12 polypeptide can be analyzed by amino acid sequence.
本发明提供了一种新的多肽一一补体受体 12 , 其基本上是由 SEQ ID NO: 2所示的 氨基酸序列组成的。 本发明的多肽可以是重组多肽、 天然多肽、 合成多肽, 优选重 组多肽。 本发明的多肽可以是天然纯化的产物, 或是化学合成的产物, 或使用重组 技术从原核或真核宿主(例如, 细菌、 酵母、 高等植物、 昆虫和哺乳动物细胞)中产 生。 根据重组生产方案所用的宿主, 本发明的多肽可以是糖基化的, 或可以是非糖 基化的。 本发明的多肽还可包括或不包括起始的甲硫氨酸残基。 The present invention provides a new polypeptide-complement receptor 12, which basically consists of the amino acid sequence shown in SEQ ID NO: 2. The polypeptide of the present invention may be a recombinant polypeptide, a natural polypeptide, or a synthetic polypeptide, and preferably a recombinant polypeptide. The polypeptides of the present invention may be naturally purified products or chemically synthesized products, or produced using recombinant techniques from prokaryotic or eukaryotic hosts (eg, bacteria, yeast, higher plants, insects, and mammalian cells). Depending on the host used in the recombinant production protocol, the polypeptide of the invention may be glycosylated, or it may be non-glycosylated. Polypeptides of the invention may also include or exclude starting methionine residues.
本发明还包括补体受体 12的片段、衍生物和类似物。如本发明所用 ,术语 "片 段" 、 "衍生物" 和 "类似物" 是指基本上保持本发明的补体受体 12相同的生物 学功能或活性的多肽。 本发明多肽的片段、 衍生物或类似物可以是: ( I )这样一 种, 其中一个或多个氨基酸残基被保守或非保守氨基酸残基 (优选的是保守氨基 酸残基) 取代, 并且取代的氨基酸可以是也可以不是由遗传密码子编码的; 或者 ( Π ) 这样一种, 其中一个或多个氨基酸残基上的某个基团被其它基团取代包含 取代基; 或者 ( I I I )这样一种, 其中成熟多肽与另一种化合物 (比如延长多肽半 衰期的化合物, 例如聚乙二醇) 融合; 或者 ( IV ) 这样一种, 其中附加的氨基酸 序列融合进成熟多肽而形成的多肽序列 (如前导序列或分泌序列或用来纯化此多 肽的序列或蛋白原序列) 通过本文的阐述, 这样的片段、 衍生物和类似物被认为 在本领域技术人员的知识范围之内。 The invention also includes fragments, derivatives and analogs of complement receptor 12. As used herein, the terms "fragment", "derivative" and "analog" refer to a polypeptide that substantially maintains the same biological function or activity of the complement receptor 12 of the present invention. The fragment, derivative or analog of the polypeptide of the present invention may be: (I) a kind in which one or more amino acid residues are substituted with conservative or non-conservative amino acid residues (preferably conservative amino acid residues), and the substitution The amino acid may or may not be encoded by a genetic codon; or (Π) such a type in which a group on one or more amino acid residues is substituted by another group to include a substituent; or (III) such A type in which a mature polypeptide is fused to another compound (such as a compound that extends the half-life of a polypeptide, such as polyethylene glycol); or (IV) a type of polypeptide sequence in which an additional amino acid sequence is fused into a mature polypeptide ( Such as the leader sequence or secreted sequence or the sequence used to purify this polypeptide or protease sequence) As explained herein, such fragments, derivatives and analogs are considered to be within the knowledge of those skilled in the art.
本发明提供了分离的核酸 (多核苷酸) , 基本由编码具有 SEQ ID NO: 2 氨基 酸序列的多肽的多核苷酸组成。 本发明的多核苷酸序列包括 SEQ ID NO: 1 的核苷 酸序列。 本发明的多核苷酸是从人胎脑组织的 cDNA文库中发现的。 它包含的多核 苷酸序列全长为 1294个碱基, 其开放读框 409- 747编码了 112个氨基酸。 根据基 因芯片表达谱比较发现, 此多肽与补体受体有相似的表达谱, 可推断出该补体受 体 12具有补体受体相似的功能。 The present invention provides an isolated nucleic acid (polynucleotide), which basically consists of a polynucleotide encoding a polypeptide having the amino acid sequence of SEQ ID NO: 2. The polynucleotide sequence of the present invention includes a nucleotide sequence of SEQ ID NO: 1. The polynucleotide of the present invention is found from a cDNA library of human fetal brain tissue. It contains a full-length nucleotide sequence of 1294 bases, and its open reading frame of 409-747 encodes 112 amino acids. According to the comparison of gene chip expression profiles, it was found that this polypeptide has a similar expression profile as the complement receptor, and it can be inferred that the complement receptor 12 has a similar function as the complement receptor.
本发明的多核苷酸可以是 DNA形式或是 RNA形式。 DNA形式包括 cDNA、 基因组 DNA或人工合成的 DNA。 DNA可以是单链的或是双链的。 DNA可以是编码链或非编
码链。 编码成熟多肽的编码区序列可以与 SEQ ID NO: 1所示的编码区序列相同或 者是简并的变异体。 如本发明所用, "简并的变异体" 在本发明中是指编码具有 SEQ ID NO: 2 的蛋白质或多肽, 但与 SEQ ID NO: 1所示的编码区序列有差别的核 酸序列。 The polynucleotide of the present invention may be in the form of DNA or RNA. DNA forms include cDNA, genomic DNA, or synthetic DNA. DNA can be single-stranded or double-stranded. DNA can be coding or non-coding Code chain. The coding region sequence encoding a mature polypeptide may be the same as the coding region sequence shown in SEQ ID NO: 1 or a degenerate variant. As used in the present invention, a "degenerate variant" refers to a nucleic acid sequence encoding a protein or polypeptide having SEQ ID NO: 2 but different from the coding region sequence shown in SEQ ID NO: 1 in the present invention.
编码 SEQ ID N0: 2的成熟多肽的多核苷酸包括: 只有成熟多肽的编码序列; 成熟多肽的编码序列和各种附加编码序列; 成熟多肽的编码序列 (和任选的附加 编码序列) 以及非编码序列。 The polynucleotide encoding the mature polypeptide of SEQ ID NO: 2 includes: only the coding sequence of the mature polypeptide; the coding sequence of the mature polypeptide and various additional coding sequences; the coding sequence of the mature polypeptide (and optional additional coding sequences); Coding sequence.
术语 "编码多肽的多核苷酸" 是指包括编码此多肽的多核苷酸和包括附加编 码和 /或非编码序列的多核苷酸。 The term "polynucleotide encoding a polypeptide" refers to a polynucleotide that includes the polypeptide and a polynucleotide that includes additional coding and / or non-coding sequences.
本发明还涉及上述描述多核苷酸的变异体, 其编码与本发明有相同的氨基酸 序列的多肽或多肽的片断、 类似物和衍生物。 此多核苷酸的变异体可以是天然发 生的等位变异体或非天然发生的变异体。 这些核苷酸变异体包括取代变异体、 缺 失变异体和插入变异体。 如本领域所知的, 等位变异体是一个多核苷酸的替换形 式, 它可能是一个或多个核苷酸的取代、 缺失或插入, 但不会从实质上改变其编 码的多肽的功能。 The invention also relates to variants of the polynucleotides described above, which encode polypeptides or fragments, analogs and derivatives of polypeptides having the same amino acid sequence as the invention. This polynucleotide variant can be a naturally occurring allelic variant or a non-naturally occurring variant. These nucleotide variants include substitution variants, deletion variants, and insertion variants. As known in the art, an allelic variant is an alternative form of a polynucleotide that may be a substitution, deletion, or insertion of one or more nucleotides, but does not substantially change the function of the polypeptide it encodes .
本发明还涉及与以上所描述的序列杂交的多核苷酸 (两个序列之间具有至少 50% , 优选具有 70%的相同性) 。 本发明特别涉及在严格条件下与本发明所述多核 苷酸可杂交的多核苷酸。 在本发明中, "严格条件" 是指: (1)在较低离子强度和 较高温度下的杂交和洗脱, 如 0. 2xSSC, 0. 1%SDS, 60 °C ;或(2)杂交时加用变性剂, 如 50°/。(v/v)甲酰胺, 0. 1°/。小牛血清 / 0. l°/。F i co l l , 42 °C等; 或(3)仅在两条序列之 间的相同性至少在 95%以上,更好是 97%以上时才发生杂交。 并且, 可杂交的多核 苷酸编码的多肽与 SEQ ID NO: 2所示的成熟多肽有相同的生物学功能和活性。 The invention also relates to a polynucleotide that hybridizes to the sequence described above (having at least 50%, preferably 70% identity between the two sequences). The present invention particularly relates to polynucleotides that can hybridize to the polynucleotides of the present invention under stringent conditions. In the present invention, "strict conditions" means: (1) hybridization and elution at lower ionic strength and higher temperature, such as 0.2xSSC, 0.1% SDS, 60 ° C; or (2) Add a denaturant during hybridization, such as 50 ° /. (V / v) formamide, 0.1 ° /. Calf serum / 0.1 ° /. F i co l l, 42 ° C, etc .; or (3) hybridization occurs only when the identity between the two sequences is at least 95% or more, and more preferably 97% or more. Moreover, the polypeptide encoded by the hybridizable polynucleotide has the same biological function and activity as the mature polypeptide shown in SEQ ID NO: 2.
本发明还涉及与以上所描述的序列杂交的核酸片段。 如本发明所用, "核酸片 段"的长度至少含 1 0个核苷酸, 较好是至少 20- 30个核苷酸, 更好是至少 50-60 个核苷酸, 最好是至少 100个核苷酸以上。 核酸片段也可用于核酸的扩增技术(如 PCR)以确定和 /或分离编码补体受体 12的多核苷酸。 The invention also relates to nucleic acid fragments that hybridize to the sequences described above. As used in the present invention, a "nucleic acid fragment" contains at least 10 nucleotides in length, preferably at least 20-30 nucleotides, more preferably at least 50-60 nucleotides, most preferably at least 100 nucleotides. Nucleotides or more. Nucleic acid fragments can also be used in nucleic acid amplification techniques, such as PCR, to identify and / or isolate polynucleotides encoding complement receptor 12.
本发明中的多肽和多核苷酸优选以分离的形式提供, 更佳地被纯化至均质。 The polypeptides and polynucleotides in the present invention are preferably provided in an isolated form and are more preferably purified to homogeneity.
本发明的编码补体受体 12的特异的多核苷酸序列能用多种方法获得。 例如, 用本领域熟知的杂交技术分离多核苷酸。 这些技术包括但不局限于: 1)用探针与 基因组或 cDNA文库杂交以检出同源的多核苷酸序列,和 2)表达文库的抗体筛选以 检出具有共同结构特征的克隆的多核苷酸片段。 The specific polynucleotide sequence encoding the complement receptor 12 of the present invention can be obtained by various methods. For example, polynucleotides are isolated using hybridization techniques well known in the art. These techniques include, but are not limited to: 1) hybridization of probes to genomic or cDNA libraries to detect homologous polynucleotide sequences, and 2) antibody screening of expression libraries to detect cloned polynucleosides with common structural characteristics Acid fragments.
本发明的 DNA 片段序列也能用下列方法获得: 1)从基因组 DNA分离双链 DNA
序列; 2)化学合成 DNA序列以获得所述多肽的双链 DNA。 The DNA fragment sequence of the present invention can also be obtained by the following methods: 1) Isolation of double-stranded DNA from genomic DNA Sequence; 2) chemically synthesize a DNA sequence to obtain double-stranded DNA of the polypeptide.
上述提到的方法中,分离基因组 DNA最不常用。 DNA序列的直接化学合成是经 常选用的方法。 更经常选用的方法是 cDNA序列的分离。 分离感兴趣的 cDNA的标 准方法是从高表达该基因的供体细胞分离 mRNA并进行逆转录, 形成质粒或噬菌体 cDNA 文库。 提取 mRNA 的方法已有多种成熟的技术, 试剂盒也可从商业途径获得 (Qiagene;)。 而构建 cDNA 文库也是通常的方法(Sambrook, et al. , Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory. New York, 1989)。 还可得到商业供应的 cDNA文库, 如 Clontech公司的不同 cDNA文库。 当 结合使用聚合酶反应技术时, 即使极少的表达产物也能克隆。 Of the methods mentioned above, genomic DNA isolation is the least commonly used. Direct chemical synthesis of DNA sequences is the method of choice. The more commonly used method is the isolation of cDNA sequences. The standard method for isolating the cDNA of interest is to isolate mRNA from donor cells that overexpress the gene and perform reverse transcription to form a plasmid or phage cDNA library. Various methods have been developed for mRNA extraction, and kits are also commercially available (Qiagene;). The construction of cDNA libraries is also a common method (Sambrook, et al., Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory. New York, 1989). Commercially available cDNA libraries are also available, such as different cDNA libraries from Clontech. When combined with polymerase reaction technology, even very small expression products can be cloned.
可用常规方法从这些 cDNA文库中筛选本发明的基因。 这些方法包括(但不限 于): (l)DNA-DNA或 DNA-RNA杂交; (2)标志基因功能的出现或丧失; (3)测定补体 受体 12 的转录本的水平; (4)通过免疫学技术或测定生物学活性, 来检测基因表 达的蛋白产物。 上述方法可单用, 也可多种方法联合应用。 The genes of the present invention can be selected from these cDNA libraries by conventional methods. These methods include (but are not limited to): (1) DNA-DNA or DNA-RNA hybridization; (2) the presence or absence of marker gene functions; (3) determining the level of complement receptor 12 transcripts; (4) passing Immunological techniques or assays for biological activity to detect gene-expressed protein products. The above methods can be used singly or in combination.
在第(1)种方法中, 杂交所用的探针是与本发明的多核苷酸的任何一部分同 源, 其长度至少 10个核苷酸, 较好是至少 30个核苷酸, 更好是至少 50个核苷酸, 最好是至少 100个核苷酸。 此外, 探针的长度通常在 2000个核苷酸之内, 较佳的 为 1000个核苷酸之内。 此处所用的探针通常是在本发明的基因序列信息的基础上 化学合成的 DNA序列。 本发明的基因本身或者片段当然可以用作探针。 DNA探针的 标记可用放射性同位素, 荧光素或酶(如碱性磷酸酶)等。 In the method (1), the probe used for hybridization is homologous to any part of the polynucleotide of the present invention, and its length is at least 10 nucleotides, preferably at least 30 nucleotides, more preferably At least 50 nucleotides, preferably at least 100 nucleotides. In addition, the length of the probe is usually within 2,000 nucleotides, preferably within 1000 nucleotides. The probe used here is generally a DNA sequence chemically synthesized based on the gene sequence information of the present invention. The genes or fragments of the present invention can of course be used as probes. DNA probes can be labeled with radioisotopes, luciferin, or enzymes (such as alkaline phosphatase).
在第(4)种方法中, 检测补体受体 12基因表达的蛋白产物可用免疫学技术如 In the (4) method, the protein product of complement receptor 12 gene expression can be detected using immunological techniques such as
Western印迹法, 放射免疫沉淀法, 酶联免疫吸附法(ELISA)等。 Western blot, radioimmunoprecipitation, enzyme-linked immunosorbent assay (ELISA), etc.
应 用 PCR 技 术 扩 增 DNA/RM 的 方 法 (Saiki, et al. Science 1985; 230: 1350-1354)被优选用于获得本发明的基因。 特别是很难从文库中得到全 长的 cDNA时, 可优选使用 RACE法(RACE- cDNA末端快速扩增法), 用于 PCR的引 物可根据本文所公开的本发明的多核苷酸序列信息适当地选择, 并可用常规方法 合成。 可用常规方法如通过凝胶电泳分离和纯化扩增的 DNA/RM片段。 A method using PCR technology to amplify DNA / RM (Saiki, et al. Science 1985; 230: 1350-1354) is preferably used to obtain the gene of the present invention. In particular, when it is difficult to obtain full-length cDNA from a library, the RACE method (RACE-rapid cDNA end rapid amplification method) may be preferably used. The primers for PCR may be appropriately based on the polynucleotide sequence information of the present invention disclosed herein. Select and synthesize using conventional methods. The amplified DNA / RM fragments can be isolated and purified by conventional methods such as by gel electrophoresis.
如上所述得到的本发明的基因, 或者各种 DNA 片段等的多核苷酸序列可用常 规方法如双脱氧链终止法(Sanger et al. PNAS, 1977, 74: 5463- 5467)测定。 这 类多核苷酸序列测定也可用商业测序试剂盒等。 为了获得全长的 cDNA序列, 测序 需反复进行。 有时需要测定多个克隆的 cDNA序列, 才能拼接成全长的 cDNA序列。 The polynucleotide sequence of the gene of the present invention or various DNA fragments and the like obtained as described above can be determined by a conventional method such as dideoxy chain termination method (Sanger et al. PNAS, 1977, 74: 5463-5467). Such polynucleotide sequences can also be determined using commercial sequencing kits. In order to obtain the full-length cDNA sequence, sequencing must be repeated. Sometimes it is necessary to determine the cDNA sequence of multiple clones in order to splice into a full-length cDNA sequence.
本发明也涉及包含本发明的多核苷酸的载体, 以及用本发明的载体或直接用 补体受体 12编码序列经基因工程产生的宿主细胞, 以及经重组技术产生本发明所
述多肽的方法。 The present invention also relates to a vector comprising the polynucleotide of the present invention, and a host cell produced by genetic engineering using the vector of the present invention or directly using a complement receptor 12 coding sequence, and the production of the present invention by recombinant technology Said method of polypeptide.
本发明中, 编码补体受体 12的多核苷酸序列可插入到载体中, 以构成含有本 发明所述多核苷酸的重组载体。 术语 "载体" 指本领域熟知的细菌质粒、 噬菌体、 酵母质粒、 植物细胞病毒、 哺乳动物细胞病毒如腺病毒、 逆转录病毒或其它载体。 在本发明中适用的载体包括但不限于: 在细菌中表达的基于 T7启动子的表达载体 (Rosenberg, et a l . Gene, 1987, 56: 125); 在喃乳动物细胞中表达的 pMSXND表 达载体(Lee and Na thans , J Bi o Chera. 263: 3521 , 1988)和在昆虫细胞中表达的 来源于杆状病毒的载体。 总之, 只要能在宿主体内复制和稳定, 任何质粒和载体 都可以用于构建重组表达载体。 表达载体的一个重要特征是通常含有复制起始点、 启动子、 标记基因和翻译调控元件。 In the present invention, a polynucleotide sequence encoding the complement receptor 12 may be inserted into a vector to constitute a recombinant vector containing the polynucleotide of the present invention. The term "vector" refers to bacterial plasmids, phages, yeast plasmids, plant cell viruses, mammalian cell viruses such as adenoviruses, retroviruses, or other vectors well known in the art. Vectors suitable for use in the present invention include, but are not limited to: T7 promoter-based expression vectors expressed in bacteria (Rosenberg, et al. Gene, 1987, 56: 125); pMSXND expression vectors expressed in mammalian cells (Lee and Na thans, J Bi o Chera. 263: 3521, 1988) and baculovirus-derived vectors expressed in insect cells. In short, as long as it can be replicated and stabilized in the host, any plasmid and vector can be used to construct a recombinant expression vector. An important feature of expression vectors is that they usually contain an origin of replication, a promoter, a marker gene, and translational regulatory elements.
本领域的技术人员熟知的方法能用于构建含编码补体受体 12的 DNA序列和合 适的转录 /翻译调控元件的表达载体。 这些方法包括体外重组 DNA技术、 DNA合成 技术、 体内重组技术等 (Sambroook, et a l . Molecular Cl oning, a Labora tory Manua l , co ld Spr ing Harbor Labora tory. New York, 1989)。 所述的 DNA序歹 [J 可有效连接到表达载体中的适当启动子上, 以指导 mRNA合成。 这些启动子的代表 性例子有: 大肠杆菌的 lac或 t rp启动子; λ噬菌体的 PL启动子; 真核启动子包 括 CMV立即早期启动子、 HSV胸苷激酶启动子、 早期和晚期 SV40启动子、 反转录 病毒的 LTRs和其它一些已知的可控制基因在原核细胞或真核细胞或其病毒中表达 的启动子。 表达载体还包括翻译起始用的核糖体结合位点和转录终止子等。 在载 体中插入增强子序列将会使其在高等真核细胞中的转录得到增强。 增强子是 DNA 表达的顺式作用因子, 通常大约有 10到 300个碱基对, 作用于启动子以增强基因 的转录。 可举的例子包括在复制起始点晚期一侧的 1 00到 270个碱基对的 SV40增 强子、 在复制起始点晚期一侧的多瘤增强子以及腺病毒增强子等。 Methods known to those skilled in the art can be used to construct expression vectors containing a DNA sequence encoding complement receptor 12 and appropriate transcriptional / translational regulatory elements. These methods include in vitro recombinant DNA technology, DNA synthesis technology, in vivo recombination technology, and the like (Sambroook, et al. Molecular Cloning, Labora tory Manua, cold Harbor Labora tory. New York, 1989). The DNA sequence [J can be operably linked to an appropriate promoter in an expression vector to guide mRNA synthesis. Representative examples of these promoters are: the lac or trp promoter of E. coli; the PL promoter of lambda phage; eukaryotic promoters include the CMV immediate early promoter, the HSV thymidine kinase promoter, and the early and late SV40 promoters , Retroviral LTRs and other known promoters that control the expression of genes in prokaryotic or eukaryotic cells or their viruses. The expression vector also includes a ribosome binding site and a transcription terminator for translation initiation. Insertion of enhancer sequences into the vector will enhance its transcription in higher eukaryotic cells. Enhancers are cis-acting factors for DNA expression, usually about 10 to 300 base pairs, which act on promoters to enhance gene transcription. Examples include 100 to 270 base pair SV40 enhancers on the late side of the origin of replication, polyoma enhancers and adenoviral enhancers on the late side of the origin of replication.
此外, 表达载体优选地包含一个或多个选择性标记基因, 以提供用于选择转 化的宿主细胞的表型性状, 如真核细胞培养用的二氢叶酸还原酶、 新霉素抗性以 及绿色荧光蛋白(GFP) , 或用于大肠杆菌的四环素或氨苄青霉素抗性等。 In addition, the expression vector preferably contains one or more selectable marker genes to provide phenotypic traits for selection of transformed host cells, such as dihydrofolate reductase, neomycin resistance, and green for eukaryotic cell culture. Fluorescent protein (GFP), or tetracycline or ampicillin resistance for E. coli.
本领域一般技术人员都清楚如何选择适当的载体 /转录调控元件(如启动子、 增强子等) 和选择性标记基因。 Those of ordinary skill in the art will know how to select appropriate vector / transcription regulatory elements (such as promoters, enhancers, etc.) and selectable marker genes.
本发明中, 编码补体受体 12的多核苷酸或含有该多核苷酸的重组载体可转化 或转导入宿主细胞, 以构成含有该多核苷酸或重组载体的基因工程化宿主细胞。 术语 "宿主细胞" 指原核细胞, 如细菌细胞; 或是低等真核细胞, 如酵母细胞; 或是高等真核细胞, 如哺乳动物细胞。 代表性例子有: 大肠杆菌, 链霉菌属; 细
菌细胞如鼠伤寒沙门氏菌;真菌细胞如酵母;植物细胞;昆虫细胞如果蝇 S2或 Sf 9 ; 动物细胞如 CH0、 COS或 Bowes黑素瘤细胞等。 In the present invention, the polynucleotide encoding the complement receptor 12 or the recombinant vector containing the polynucleotide can be transformed or transduced into a host cell to constitute a genetically engineered host cell containing the polynucleotide or the recombinant vector. The term "host cell" refers to a prokaryotic cell, such as a bacterial cell; or a lower eukaryotic cell, such as a yeast cell; or a higher eukaryotic cell, such as a mammalian cell. Representative examples are: E. coli, Streptomyces; fine Bacterial cells such as Salmonella typhimurium; fungal cells such as yeast; plant cells; insect cells such as fly S2 or Sf9; animal cells such as CH0, COS or Bowes melanoma cells.
用本发明所述的 DNA序列或含有所述 DNA序列的重组载体转化宿主细胞可用 本领域技术人员熟知的常规技术进行。 当宿主为原核生物如大肠杆菌时, 能吸收 DNA的感受态细胞可在指数生长期后收获, 用 CaC l2法处理, 所用的步骤在本领域 众所周知。 可供选择的是用 MgC l2。 如果需要, 转化也可用电穿孔的方法进行。 当 宿主是真核生物, 可选用如下的 DM 转染方法: 磷酸钙共沉淀法, 或者常规机械 方法如显微注射、 电穿孔、 脂质体包装等。 Transformation of a host cell with a DNA sequence described in the present invention or a recombinant vector containing the DNA sequence can be performed using conventional techniques well known to those skilled in the art. When the host is a prokaryote such as E. coli, competent cells capable of DNA uptake can be in the exponential growth phase were harvested, treated with CaC l 2 method used in steps well known in the art. The alternative is to use MgC l 2 . If necessary, transformation can also be performed by electroporation. When the host is a eukaryotic organism, the following DM transfection methods can be used: calcium phosphate co-precipitation method, or conventional mechanical methods such as microinjection, electroporation, and liposome packaging.
通过常规的重组 DNA技术, 利用本发明的多核苷酸序列可用来表达或生产重 组的补体受体 1 2 (Sc i ence , 1984 ; 224 : 1431)。 一般来说有以下步骤: Using conventional recombinant DNA technology, the polynucleotide sequence of the present invention can be used to express or produce recombinant complement receptors 12 (Scence, 1984; 224: 1431). Generally there are the following steps:
(1) .用本发明的编码人 补体受体 12 的多核苷酸 (或变异体), 或用含有该多 核苷酸的重组表达载体转化或转导合适的宿主细胞; (1) using the polynucleotide (or variant) encoding the human complement receptor 12 of the present invention, or transforming or transducing a suitable host cell with a recombinant expression vector containing the polynucleotide;
(2) .在合适的培养基中培养宿主细胞; (2) culturing host cells in a suitable medium;
(3) .从培养基或细胞中分离、 纯化蛋白质。 (3) Isolate and purify protein from culture medium or cells.
在步骤 (2 ) 中, 根据所用的宿主细胞, 培养中所用的培养基可选自各种常 规培养基。 在适于宿主细胞生长的条件下进行培养。 当宿主细胞生长到适当的细 胞密度后, 用合适的方法(如温度转换或化学诱导)诱导选择的启动子, 将细胞再 培养一段时间。 In step (2), the medium used in the culture may be selected from various conventional mediums according to the host cells used. Culture is performed under conditions suitable for host cell growth. After the host cells have grown to an appropriate cell density, the selected promoter is induced by a suitable method (such as temperature conversion or chemical induction), and the cells are cultured for a period of time.
在步骤( 3 ) 中, 重组多肽可包被于细胞内、 或在细胞膜上表达、 或分泌到细 胞外。 如果需要, 可利用其物理的、 化学的和其它特性通过各种分离方法分离和 纯化重组的蛋白。 这些方法是本领域技术人员所熟知的。 这些方法包括但并不限 于: 常规的复性处理、 蛋白沉淀剂处理(盐析方法)、 离心、 渗透破菌、 超声波处 理、 超离心、 分子筛层析(凝胶过滤)、 吸附层析、 离子交换层析、 高效液相层析 (HPLC)和其它各种液相层析技术及这些方法的结合。 In step (3), the recombinant polypeptide may be coated in a cell, expressed on a cell membrane, or secreted outside the cell. If necessary, recombinant proteins can be isolated and purified by various separation methods using their physical, chemical, and other properties. These methods are well known to those skilled in the art. These methods include, but are not limited to: conventional renaturation treatment, protein precipitant treatment (salting out method), centrifugation, osmotic disruption, ultrasonic treatment, ultracentrifugation, molecular sieve chromatography (gel filtration), adsorption chromatography, ion Exchange chromatography, high performance liquid chromatography (HPLC), and various other liquid chromatography techniques and combinations of these methods.
附图的简要说明 Brief description of the drawings
下列附图用于说明本发明的具体实施方案, 而不用于限定由杈利要求书所界 定的本发明范围。 The following drawings are used to illustrate specific embodiments of the present invention, but not to limit the scope of the present invention as defined by the claims.
图 1是本发明补体受体 12和补体受体的基因芯片表达谱比较图。上图是补体受体 Fig. 1 is a comparison diagram of gene chip expression profiles of complement receptor 12 and complement receptor of the present invention. Pictured above is the complement receptor
12的表达谱折方图, 下图是补体受体的表达谱折方图。 其中, 1-膀胱粘膜、 2-PMA+ 的 Ecv304细胞株、 3-LPS+的 Ecv304细胞株胸腺、 4-正常成纤维细胞 1 024NC、
5-Fibroblas t , 生长因子刺激, 1024NT、 6-疤痕成 fc生长因子刺激, 1013HT、 7 -疤 痕成 fc未用生长因子刺激, 1013HC、 8-膀胱癌建株细胞 EJ、 9-膀胱癌旁、 10-膀胱癌、 11-肝癌、 12-肝癌细胞株、 13-胎皮、 14-脾脏、 15-前列腺癌、 16-空肠腺癌、 17贲 门癌。 Figure 12 shows a graph of the complement of the complement receptor. Among them, 1-bladder mucosa, 2-PMA + Ecv304 cell line, 3-LPS + Ecv304 cell line thymus, 4-normal fibroblasts 1 024NC, 5-Fibroblas t, growth factor stimulation, 1024NT, 6- scar into fc growth factor stimulation, 1013HT, 7- scar into fc without growth factor stimulation, 1013HC, 8-bladder cancer cell EJ, 9-bladder cancer, 10-bladder cancer, 11-liver cancer, 12-liver cancer cell line, 13-fetal skin, 14-spleen, 15-prostate cancer, 16-jejunum adenocarcinoma, 17 cardia cancer.
图 2为分离的补体受体 12的聚丙烯酰胺凝胶电泳图 (SDS- PAGE ) 。 12kDa为蛋白 质的分子量。 箭头所指为分离出的蛋白条带。 实现本发明的最佳方式 Figure 2 shows the polyacrylamide gel electrophoresis (SDS-PAGE) of isolated complement receptor 12. 12kDa is the molecular weight of the protein. The arrow indicates the isolated protein band. The best way to implement the invention
下面结合具体实施例, 进一步阐述本发明。 应理解, 这些实施例仅用于说明本 发明而不用于限制本发明的范围。 下列实施例中未注明具体条件的实验方法, 通 常按照常规条件如 Sambrook等人, 分子克隆:实验室手册(New York: Co ld Spr ing Harbor Labora tory Pres s, 1989)中所述的条件, 或按照制造厂商所建议的条件。 实施例 1 : 补体受体 12的克隆 The present invention is further described below with reference to specific embodiments. It should be understood that these examples are only used to illustrate the present invention and not to limit the scope of the present invention. In the following examples, the experimental methods without specific conditions are generally described in accordance with the general conditions such as those described in Sambrook et al., Molecular Cloning: Laboratory Manual (New York: Cod Harbor Harbor Labora tory Pres s, 1989), Or as recommended by the manufacturer. Example 1: Cloning of complement receptor 12
用异硫氰酸胍 /酚 /氯仿一步法提取人胎脑总 RNA。 用 Quik raRNA I solat ion Ki t ( Qiegene 公司产品)从总 RNA中分离 poly (A) mRNA。 2ug poly (A) mRNA经逆转录形 成 cDNA。 用 Smart cDNA克隆试剂盒(购自 Clontech ) 将 cDNA片段定向插入到 pBSK (+) 载体 (Clontech公司产品)的多克隆位点上, 转化 DH5 α , 细菌形成 cDNA文库。 用 Dye terminate cycle react ion sequencing ki t (Perkin-Elmer公司产品) 和 ABI 377自 动测序仪(Perkin- Elmer公司)测定所有克隆的 5'和 3'末端的序列。将测定的 cDNA序列 与已有的公共 DM序列数据库(Genebank )进行比较, 结果发现其中一个克隆 0749g07 的 cDNA序列为新的 DNA。 通过合成一系列引物对该克隆所含的插入 cDNA片段进行双向 测定。 结果表明, 0749g07克隆所含的全长 cDNA为 1294bp (如 Seq ID N0: 1所示) , 从 第 409bp至 747bp有一个 339bp的开放阅读框架 ( 0RF ) , 编码一个新的蛋白质 (如 Seq ID N0: 2所示)。 我们将此克隆命名为 PBS-0749g07 , 编码的蛋白质命名为补体受体 12。 实施例 2: 用 RT- PCR方法克隆编码补体受体 12的基因 Total human fetal brain RNA was extracted by one-step method with guanidine isothiocyanate / phenol / chloroform. Poly (A) mRNA was isolated from total RNA using Quik raRNA I solat ion Kit (product of Qiegene). 2ug poly (A) mRNA is reverse transcribed to form cDNA. The Smart cDNA cloning kit (purchased from Clontech) was used to insert the cDNA fragment into the multiple cloning site of the pBSK (+) vector (Clontech) to transform DH5α to form a cDNA library. Dye terminate cycle react ion sequencing kit (Perkin-Elmer) and ABI 377 automatic sequencer (Perkin-Elmer) were used to determine the sequences at the 5 'and 3' ends of all clones. The determined cDNA sequence was compared with the existing public DM sequence database (Genebank), and it was found that the cDNA sequence of one of the clones 0749 g 07 was new DNA. A series of primers were synthesized to determine the inserted cDNA fragments of the clone in both directions. The results showed that the full-length cDNA contained in the 0749g07 clone was 1294bp (as shown in Seq ID N0: 1), and there was a 339bp open reading frame (0RF) from 409bp to 747bp, encoding a new protein (such as Seq ID N0 : Shown in 2). We named this clone P BS-0749g07, and the encoded protein was named complement receptor 12. Example 2: Cloning of a gene encoding complement receptor 12 by RT-PCR
用胎脑细胞总 RNA为模板, 以 ol igo-dT为引物进行逆转录反应合成 cDNA,用 Qiagene的试剂盒纯化后,用下列引物进行 PCR扩增: CDNA was synthesized using fetal brain total RNA as a template and ol igo-dT as a primer for reverse transcription reaction. After purification using Qiagene's kit, the following primers were used for PCR amplification:
Pr iraerl: 5,- GTCTATAAATATGATAAGCAAGTG -3, (SEQ ID NO: 3) Pr iraerl: 5,-GTCTATAAATATGATAAGCAAGTG -3, (SEQ ID NO: 3)
Pr imer 2: 5'- CTGAATTGAATGTCTTTAATTTCA -3' (SEQ ID NO: 4) Pr imer 2: 5'- CTGAATTGAATGTCTTTAATTTCA -3 '(SEQ ID NO: 4)
Primerl为位于 SEQ ID NO: 1的 5,端的第 lbp开始的正向序列; Primerl is a forward sequence located at the 5th end of SEQ ID NO: 1, starting at lbp;
Pr imer2为 SEQ ID NO: 1的中的 3'端反向序列。
扩增反应的条件: 在 50 μ 1的反应体积中含有 50mmol/L KC1, 10隱 ol/L Tris-Cl, (pH8.5) , 1.5mmol/L MgCl2) 200 μ mol/L dNTP, lOpmol引物, 1U的 Taq DNA聚 合酶(Clontech公司产品)。 在 PE9600型 DM热循环仪(Perkin- Elmer公司)上按下列条 件反应 25个周期: 94°C 30sec; 55°C 30sec; 72°C 2min。 在 RT- PCR时同时设 β - actin 为阳性对照和模板空白为阴性对照。 扩增产物用 QIAGEN公司的试剂盒纯化, 用 TA克隆 试剂盒连接到 PCR载体上(Invitrogen公司产品) 。 DM序列分析结果表明 PCR产物的 DNA序列与 SEQ ID NO: 1所示的 1- 1294bp完全相同。 实施例 3: Northern 印迹法分析补体受体 12基因的表达: Pr imer2 is the 3′-end reverse sequence in SEQ ID NO: 1. Amplification reaction conditions: 50 mmol / L KC1, 10 crypto ol / L Tris-Cl, (pH8.5), 1.5 mmol / L MgCl 2) 200 μ mol / L dNTP, lOpmol in a reaction volume of 50 μ 1 Primer, 1U Taq DNA polymerase (Clontech). The reaction was performed on a PE9600 DM thermal cycler (Perkin-Elmer) under the following conditions for 25 cycles: 94 ° C 30sec; 55 ° C 30sec; 72 ° C 2min. During RT-PCR, β-actin was set as a positive control and template blank was set as a negative control. The amplified product was purified using a QIAGEN kit and ligated to a PCR vector (Invitrogen product) using a TA cloning kit. DM sequence analysis results showed that the DNA sequence of the PCR product was exactly the same as that of 1 to 1294bp shown in SEQ ID NO: 1. Example 3: Northern blot analysis of complement receptor 12 gene expression:
用一步法提取总 RNA [Anal. Biochem 1987, 162, 156-159] 0 该法包括酸性硫氰酸 胍苯酚 -氯仿抽提。 即用 4M异硫氰酸胍- 25mM柠檬酸钠, 0.2M乙酸钠 ( pH4.0 ) 对组织 进行匀浆, 加入 1倍体积的苯酚和 1/5体积的氯仿-异戊醇(49: 1), 混合后离心。 吸 出水相层, 加入异丙醇 (0.8体积)并将混合物离心得到 RNA沉淀。 将得到的 RNA沉淀 用 70%乙醇洗涤, 干燥并溶于水中。 用 20μ§ RNA, 在含 20mM 3- (N-吗啉代) 丙磺酸 (pH7.0) - 5mM乙酸钠 - ImM EDTA- 2.2M甲醛的 1.2%琼脂糖凝胶上进行电泳。 然后转移 至硝酸纤维素膜上。用 a- 32P dATP通过随机引物法制备 32P-标记的 DNA探针。所用的 DNA 探针为图 1所示的 PCR扩增的补体受体 12编码区序列(409bp至 747bp)。将 32P-标记的探 针(约 2 x l06cpm/ml )与转移了 RNA的硝酸纤维素膜在一溶液中于 42DC杂交过夜, 该溶 液包含 50%甲酰胺- 25raM KH2P04 ( pH7.4 ) - 5 x SSC- 5 χ Denhardt's溶液和 200 μ g/ml鲑 精 DN' 杂交之后, 将滤膜在 1 xSSC-0.1%SDS中于 55°C洗 30min。 然后, 用 Phosphor Imager进行分析和定量。 实施例 4: 重组补体受体 12的体外表达、 分离和纯化 Total RNA extraction in one step [Anal. Biochem 1987, 162, 156-159] 0 This method involves acid guanidinium thiocyanate-chloroform extraction. That is, the tissue is homogenized with 4M guanidinium isothiocyanate-25mM sodium citrate, 0.2M sodium acetate (pH4.0), and 1 volume of phenol and 1/5 volume of chloroform-isoamyl alcohol (49: 1 ), Centrifuge after mixing. The aqueous layer was aspirated, isopropanol (0.8 vol) was added and the mixture was centrifuged to obtain RNA precipitate. The resulting RNA pellet was washed with 70% ethanol, dried and dissolved in water. Using 20 μ § RNA, electrophoresis was performed on a 1.2% agarose gel containing 20 mM 3- (N-morpholino) propanesulfonic acid (pH 7.0)-5 mM sodium acetate-1 mM EDTA-2.2M formaldehyde. It was then transferred to a nitrocellulose membrane. Preparation 32 P- DNA probe labeled with a- 32 P dATP by random priming method. The DNA probe used was the PCR-amplified complement receptor 12 coding region sequence (409bp to 747bp) shown in FIG. 1. The 32P- labeled probes (about 2 x l0 6 cpm / ml) and RNA was transferred to nitrocellulose membrane 42 D C hybridized overnight in a solution, the solution comprising 50% formamide - 25raM KH 2 P0 4 (pH 7.4)-5 x SSC-5 x Denhardt's solution was hybridized with 200 μg / ml salmon sperm DN ', and the filter was washed in 1 x SSC-0.1% SDS at 55 ° C for 30 min. Then, Phosphor Imager was used for analysis and quantification. Example 4: In vitro expression, isolation and purification of recombinant complement receptor 12
根据 SEQ ID NO: 1和图 1所示的编码区序列, 设计出一对特异性扩增引物, 序列如 下: Based on SEQ ID NO: 1 and the coding region sequence shown in Figure 1, a pair of specific amplification primers was designed, the sequence is as follows:
Primer3: 5 '-CATGCTAGCATGTCATCACAGTGCCTAGAAACT-3 ' ( Seq ID No: 5 ) Primer3: 5 '-CATGCTAGCATGTCATCACAGTGCCTAGAAACT-3' (Seq ID No: 5)
Primer4: 5'-CATGGATCCTTAAAAAAAGGAAGAAAAAGAAAG-3' (Seq ID No: 6 ) 此两段引物的 5'端分别含有 Nhel和 BamHI酶切位点,其后分别为目的基因 5'端和 3' 端的编码序列, Nhel和 BamHI酶切位点相应于表达载体质粒 pET- 28b(+) (Novagen公司 产品, Cat. No.69865.3)上的选择性内切酶位点。 以含有全长目的基因的 pBS- 0749g07 质粒为模板,进行 PCR反应。 PCR反应条件为: 总体积 50μ 1中含 pBS- 0749g07质粒 10pg、 引物?1^0161"-3和卩:1:111161:-4分另!|为1(^11101、 Advantage polymerase Mix (Clontech公司
产品) 1 μ 1。 循环参数: 94°C 20s, 60°C 30s, 68。C 2 min,共 25个循环。 用 Nhel和 BamHI 分别对扩增产物和质粒 pET- 28 (+)进行双酶切,分别回收大片段,并用 T4连接酶连接。 连接产物转化用氯化钙法大肠杆细菌 DH5 a ,在含卡那霉素 (终浓度 30 μ §/πι1 ) 的 LB 平板培养过夜后, 用菌落 PCR方法筛选阳性克隆, 并进行测序。 挑选序列正确的阳性 克隆 ( pET-0749gO7 )用氯化钙法将重组质粒转化大肠杆菌 BL21 (DE3) plySs (Novagen 公司产品)。 在含卡那霉素 (终浓度 30 g/ml ) 的 LB液体培养基中, 宿主菌 BL21 ( pET- 0749g07 ) 在 37。C培养至对数生长期, 加入 IPTG至终浓度 1隱 ol/L, 继续培养 5 小时。 离心收集菌体, 经超声波破菌,离心收集上清, 用能与 6个组氨酸(6Hi s- Tag ) 结合的亲和层析柱 Hi s. Bind Quick Cartridge ( Novagen公司产品)进行层析, 得到 了纯化的目的蛋白补体受体 12。经 SDS- PAGE电泳,在 12kDa处得到一单一的条带(图 2 )。 将该条带转移至 PVDF膜上用 Edams水解法进行 N-端氨基酸序列分析, 结果 N-端 15个氨 基酸与 SEQ ID NO: 2所示的 N-端 15个氨基酸残基完全相同。 实施例 5 抗补体受体 12抗体的产生 Primer4: 5'-CATGGATCCTTAAAAAAAGGAAGAAAAAGAAAG-3 '(Seq ID No: 6) The 5' ends of these two primers contain Nhel and BamHI digestion sites, respectively, followed by the coding sequences of the 5 'and 3' ends of the target gene, respectively. Nhel and BamHI restriction sites correspond to selective endonuclease sites on the expression vector plasmid pET-28b (+) (Novagen, Cat. No. 69865.3). The PCR reaction was performed using the pBS-0749 g 07 plasmid containing the full-length target gene as a template. The PCR reaction conditions are as follows: a total volume of 50μ1, containing 10 pg of pBS-0749g07 plasmid, primers? 1 ^ 0161 "-3 and 卩: 1: 111161: -4 min! Also for 1 (^ 11101, Advantage polymerase Mix (Clontech) Product) 1 μ 1. Cycle parameters: 94 ° C 20s, 60 ° C 30s, 68. C 2 min, a total of 25 cycles. Nhel and BamHI were used to double-digest the amplified product and plasmid pET-28 (+), respectively, and large fragments were recovered and ligated with T4 ligase. The ligation product was transformed into E. coli DH5a by the calcium chloride method, cultured overnight in LB plates containing kanamycin (final concentration 30 μ § / πι1), and positive clones were selected by colony PCR method and sequenced. A positive clone (pET-0749gO7) with the correct sequence was selected, and the recombinant plasmid was transformed into E. coli BL21 (DE3) plySs (product of Novagen) by the calcium chloride method. In LB liquid medium containing kanamycin (final concentration 30 g / ml), the host strain BL21 (pET-0749g07) was at 37. C. Cultivate to logarithmic growth phase, add IPTG to a final concentration of 1 ol / L, and continue to cultivate for 5 hours. The bacteria were collected by centrifugation, and the supernatant was collected by centrifugation. The supernatant was collected by centrifugation. Chromatography was performed using an affinity chromatography column His s. Bind Quick Cartridge (product of Novagen) capable of binding to 6 histidines (6His-Tag). The purified protein complement receptor 12 was obtained. After SDS-PAGE electrophoresis, a single band was obtained at 12 kDa (Figure 2). The band was transferred to a PVDF membrane and the N-terminal amino acid sequence was analyzed by the Edams hydrolysis method. As a result, the 15 amino acids at the N-terminus were identical to the 15 amino acid residues at the N-terminus shown in SEQ ID NO: 2. Example 5 Production of anti-complement receptor 12 antibodies
用多肽合成仪(PE公司产品)合成下述补体受体 12特异性的多肽: A peptide synthesizer (product of PE company) was used to synthesize the following complement receptor 12-specific peptides:
NH2-Met-Ser-Ser-Gln-Cys-Leu-Glu-Thr-Arg-Thr-Val-I le-Tyr-Arg-Ser-C00H (SEQ ID NO: 7)。 将该多肽分别与血蓝蛋白和牛血清白蛋白耦合形成复合, 方法参见: Avraraeas, et al. Immunochemi s try, 1969; 6: 43。 用 4mg上述血蓝蛋白多肽复合物力口上 完全弗氏佐剂免疫家兔, 15天后再用血蓝蛋白多肽复合物加不完全弗氏佐剂加强免疫 一次。 采用经 15 y g/ml牛血清白蛋白多肽复合物包被的滴定板做 ELISA测定兔血清中 抗体的滴度。 用蛋白 A-Sepharose从抗体阳性的家兔血清中分离总 IgG。 将多肽结合于 溴化氰活化的 Sepharos B柱上, 用亲和层析法从总 IgG中分离抗多肽抗体。 免疫沉淀 法证明纯化的抗体可特异性地与补体受体 12结合。 实施例 6: 本发明的多核苷酸片段用作杂交探针的应用 NH2-Met-Ser-Ser-Gln-Cys-Leu-Glu-Thr-Arg-Thr-Val-I le-Tyr-Arg-Ser-C00H (SEQ ID NO: 7). The polypeptide is coupled to hemocyanin and bovine serum albumin to form a complex, respectively. For the method, see: Avraraeas, et al. Immunochemi s try, 1969; 6: 43. Rabbits were immunized with 4 mg of the hemocyanin-polypeptide complex with complete Freund's adjuvant. After 15 days, the rabbits were immunized with hemocyanin-polypeptide complex and incomplete Freund's adjuvant once. A titer plate coated with a 15 μg / ml bovine serum albumin peptide complex was used as an ELISA to determine the antibody titer in rabbit serum. Protein A-Sepharose was used to isolate total IgG from antibody-positive rabbit serum. The peptide was bound to a Sepharos B column activated by cyanogen bromide, and the anti-peptide antibody was separated from the total IgG by affinity chromatography. The immunoprecipitation method demonstrated that the purified antibody specifically binds to complement receptor 12. Example 6: Application of the polynucleotide fragment of the present invention as a hybridization probe
从本发明的多核苷酸中挑选出合适的寡核苷酸片段用作杂交探针有多方面的用 途, 如用该探针可与不同来源的正常组织或病理组织的基因组或 cDNA文库杂交以鉴 定其是否含有本发明的多核苷酸序列和检出同源的多核苷酸序列,进一步还可用该 探针检测本发明的多核苷酸序列或其同源的多核苷酸序列在正常组织或病理组织细 胞中的表达是否异常。 Suitable oligonucleotide fragments selected from the polynucleotides of the present invention are used as hybridization probes in a variety of ways. For example, the probes can be used to hybridize to genomic or cDNA libraries of normal tissue or pathological tissue from different sources to It is determined whether it contains the polynucleotide sequence of the present invention and a homologous polynucleotide sequence is detected. Further, the probe can be used to detect the polynucleotide sequence of the present invention or its homologous polynucleotide sequence in normal tissues or Whether the expression in tissue cells is abnormal.
本实施例的目的是从本发明的多核苷酸 SEQ ID NO: 1中挑选出合适的寡核苷酸 片段用作杂交探针, 并用滤膜杂交方法鉴定一些组织中是否含有本发明的多核苷酸
序列或其同源的多核苷酸序列。 滤膜杂交方法包括斑点印迹法、 Southern印迹法、 Northern印迹法和复印方法等, 它们都是将待测的多核苷酸样品固定在滤膜上后使 用基本相同的步骤杂交。 这些相同的步骤是: 固定了样品的滤膜首先用不含探针的 杂交缓冲液进行预杂交, 以使滤膜上样品的非特异性的结合部位被载体和合成的多 聚物所饱和。 然后预杂交液被含有标记探针的杂交缓冲液替换, 并保温使探针与靶 核酸杂交。 杂交步骤之后, 未杂交上的探针被一系列洗膜步骤除掉。 本实施例利用 较高强度的洗膜条件(如较低盐浓度和较高的温度), 以使杂交背景降低且只保留特 异性强的信号。 本实施例选用的探针包括两类: 第一类探针是完全与本发明的多核 苷酸 SEQ ID N0: 1相同或互补的寡核苷酸片段; 第二类探针是部分与本发明的多核 苷酸 SEQ ID N0: 1相同或互补的寡核苷酸片段。 本实施例选用斑点印迹法将样品固 定在滤膜上, 在较高强度的的洗膜条件下, 第一类探针与样品的杂交特异性最强而 得以保留。 The purpose of this embodiment is to select a suitable oligonucleotide fragment from the polynucleotide SEQ ID NO: 1 of the present invention as a hybridization probe, and to identify whether some tissues contain the polynucleoside of the present invention by using a filter hybridization method. Sour Sequence or a homologous polynucleotide sequence thereof. Filter hybridization methods include dot blotting, Southern blotting, Northern blotting, and copying methods. They are all used to fix the polynucleotide sample to be tested on the filter and then hybridize using basically the same steps. These same steps are as follows: The sample-immobilized filter is first pre-hybridized with a probe-free hybridization buffer, so that the non-specific binding site of the sample on the filter is saturated with the carrier and the synthetic polymer. The pre-hybridization solution is then replaced with a hybridization buffer containing the labeled probe and incubated to hybridize the probe to the target nucleic acid. After the hybridization step, the unhybridized probes are removed by a series of membrane washing steps. This embodiment utilizes higher-intensity washing conditions (such as lower salt concentration and higher temperature) to reduce the hybridization background and retain only strong specific signals. The probes used in this embodiment include two types: the first type of probes are oligonucleotide fragments that are completely the same as or complementary to the polynucleotide SEQ ID NO: 1 of the invention; the second type of probes are partially related to the invention The polynucleotide SEQ ID NO: 1 is the same or complementary oligonucleotide fragment. In this embodiment, the dot blot method is used to fix the sample on the filter membrane. Under the high-intensity washing conditions, the first type of probe and the sample have the strongest hybridization specificity and are retained.
一、 探针的选用 First, the selection of the probe
从本发明的多核苷酸 SEQ ID NO: 1中选择寡核苷酸片段用作杂交探针, 应遵循 以下原则和需要考虑的几个方面: The selection of oligonucleotide fragments from the polynucleotide SEQ ID NO: 1 of the present invention for use as hybridization probes should follow the following principles and several aspects to be considered:
1 , 探针大小优选范围为 18-50个核苷酸; 1. The preferred range of probe size is 18-50 nucleotides;
2 , GC含量为 30%- 70%, 超过则非特异性杂交增加; 2.The GC content is 30% -70%, and the non-specific hybridization increases when it exceeds;
3 , 探针内部应无互补区域; 3, there should be no complementary regions inside the probe;
4, 符合以上条件的可作为初选探针, 然后进一步作计算机序列分析,包括将该初选 探针分别与其来源序列区域 (即 SEQ ID NO: 1 ) 和其它已知的基因组序列及其互 补区进行同源性比较,若与非靶分子区域的同源性大于 85%或者有超过 15个连续 碱基完全相同, 则该初选探针一般就不应该使用; 4. Those that meet the above conditions can be used as primary selection probes, and then further computer sequence analysis, including the primary selection probe and its source sequence region (ie, SEQ ID NO: 1) and other known genomic sequences and their complements The region is compared for homology. If the homology with the non-target molecule region is greater than 85% or there are more than 15 consecutive bases, then the primary probe should not be used;
5 , 初选探针是否最终选定为有实际应用价值的探针还应进一步由实验确定。 5. Whether the preliminary selection probe is finally selected as a probe with practical application value should be further determined by experiments.
完成以上各方面的分析后挑选并合成以下二个探针: After completing the above analysis, select and synthesize the following two probes:
探针 1 ( probel ), 属于笫一类探针, 与 SEQ ID NO: 1的基因片段完全同源 或互补 ( 41Nt ): Probe 1 (probel), which belongs to the first class of probes, is completely homologous or complementary to the gene fragment of SEQ ID NO: 1 (41Nt):
5'-TGTCATCACAGTGCCTAGAAACTCGAACTGTAATATATCGT-3' ( SEQ ID NO: 8 ) 5'-TGTCATCACAGTGCCTAGAAACTCGAACTGTAATATATCGT-3 '(SEQ ID NO: 8)
探针 2 ( probe2 ), 属于第二类探针, 相当于 SEQ ID NO: 1的基因片段或其 互补片段的替换突变序列 (權): Probe 2 (probe2), which belongs to the second type of probe, is equivalent to the replacement mutant sequence (right) of the gene fragment of SEQ ID NO: 1 or its complementary fragment:
5'-TGTCATCACAGTGCCTAGAACCTCGAACTGTAATATATCGT-3' ( SEQ ID NO: 9 ) 与以下具体实验步骤有关的其它未列出的常用试剂及其配制方法请参考文献: DNA PROBES G. H. Ke l ler; M. M. Manak; S tockton Pres s, 1989 (USA)以及更常用的分
子克隆实验手册书籍如《分子克隆实验指南》(1998年第二版) [美]萨姆布鲁克等著, 科学出版社。 5'-TGTCATCACAGTGCCTAGAACCTCGAACTGTAATATATCGT-3 '(SEQ ID NO: 9) For other commonly used reagents and their preparation methods not related to the following specific experimental steps, please refer to the literature: DNA PROBES GH Keller; MM Manak; S tockton Pres s , 1989 (USA) and more commonly used points Books on subcloning experiment manuals such as "Guide to Molecular Cloning Experiments" (Second Edition, 1998) [US] Sambrook and others, Science Press.
样品制备: Sample Preparation:
1, 从新鲜或冰冻组织中提取 DNA 1.Extract DNA from fresh or frozen tissue
步骤: 1 ) 将新鲜或新鲜解冻的正常肝组织放入浸在冰上并盛有磷酸盐缓冲液 Steps: 1) Place fresh or freshly thawed normal liver tissue in ice and hold phosphate buffered saline
(PBS) 的平皿中。 用剪刀或手术刀将组织切成小块。 操作中应保持组织湿润。 2 ) 以 lOOOg 离心切碎组织 10分钟。 3 )用冷匀浆缓冲液 ( 0.25mol/L蔗糖; 25ramol/L Tris-HCl,pH7.5; 25腿 ol/LnaCl; 25麵 ol/L MgCl2 ) 悬浮沉淀(大约 10ml/g)。 4 ) ' 在 4°C用电动匀浆器以全速匀浆组织悬液, 直至组织被完全破碎。 5 ) 1000g离心 10 分钟。 6 )用重悬细胞沉淀(每 O. lg最初组织样品加 1- 5ml ), 再以 lOOOg离心 10 分钟。 7 )用裂解缓冲液重悬沉淀(每 O. lg最初组织样品加 lml ), 然后接以下的苯 酚抽提法。 (PBS). Cut the tissue into small pieces with scissors or a scalpel. Keep tissue moist during operation. 2) Centrifuge the tissue at 1,000 g for 10 minutes. 3) Suspend the precipitate (about 10 ml / g) with cold homogenization buffer (0.25 mol / L sucrose; 25 ramol / L Tris-HCl, pH 7.5; 25 legs ol / LnaCl; 25 sides ol / L MgCl 2 ). 4) 'Homogenize the tissue suspension at 4 ° C at full speed with an electric homogenizer until the tissue is completely broken. 5) Centrifuge at 1000g for 10 minutes. 6) Resuspend the cell pellet (1 to 5 ml per 0.1 g of the original tissue sample), and centrifuge at 1,000 g for 10 minutes. 7) Resuspend the pellet with lysis buffer (add 1 ml per 0.1 g of the initial tissue sample), and then follow the following phenol extraction method.
2, DNA的苯酚抽提法 2, DNA phenol extraction method
步骤: 1 )用 l-10ml冷 PBS洗细胞, lOOOg离心 10分钟。 2 )用冷细胞裂解液重 悬浮沉淀的细胞 ( 1 X 108细胞 /ml ) 最少应用 lOOul 裂解缓冲液。 3 )加 SDS 至终浓 度为 1%, 如果在重悬细胞之前将 SDS直接加入到细胞沉淀中, 细胞可能会形成大的 团块而难以破碎, 并降低的总产率。 这一点在抽提〉107细胞时特别严重。 4 ) 加蛋白 酶 K至终浓度 200ug/ml。 5) 50°C保温反应 1小时或在 37°C轻轻振摇过夜。 6 )用等 体积苯酚: 氯仿: 异戊醇 ( 25: 24: 1 )抽提, 在小离心机管中离心 10分钟。 两相 应清楚分离, 否则重新进行离心。 7 ) 将水相转移至新管。 8 ) 用等体积氯仿: 异戊 醇(24: 1 )抽提, 离心 10分钟。 9)将含 DNA的水相转移至新管。 然后进行 DNA的 纯化和乙醇沉淀。 Steps: 1) Wash the cells with 1-10 ml of cold PBS and centrifuge at 1000 g for 10 minutes. 2) Resuspend the pelleted cells (1 × 10 8 cells / ml) with cold cell lysate and apply a minimum of 100ul lysis buffer. 3) Add SDS to a final concentration of 1%. If SDS is directly added to the cell pellet before resuspending the cells, the cells may form large clumps that are difficult to break, and reduce the overall yield. This is particularly serious when extracting> 10 7 cells. 4) Add proteinase K to a final concentration of 200ug / ml. 5) Incubate at 50 ° C for 1 hour or shake gently at 37 ° C overnight. 6) Extract with an equal volume of phenol: chloroform: isoamyl alcohol (25: 24: 1) and centrifuge in a small centrifuge tube for 10 minutes. The two should be clearly separated, otherwise centrifuge again. 7) Transfer the water phase to a new tube. 8) Extract with an equal volume of chloroform: isoamyl alcohol (24: 1) and centrifuge for 10 minutes. 9) Transfer the DNA-containing aqueous phase to a new tube. The DNA was then purified and ethanol precipitated.
3, DM的纯化和乙醇沉淀 3.Purification and ethanol precipitation of DM
步骤: 1 ) 将 1 0体积 2mol/L醋酸钠和 2倍体积冷 100%乙醇加到 DNA溶液中, 混匀。 在 -20°C放置 1小时或至过夜。 2)离心 10分钟。 3)小心吸出或倒出乙醇。 4 ) 用 70%冷乙醇 500ul洗涤沉淀, 离心 5分钟。 5)小心吸出或倒出乙醇。 用 500ul冷 乙醇洗涤沉淀, 离心 5分钟。 6 )小心吸出或倒出乙醇, 然后在吸水纸上倒置使残余 乙醇流尽。 空气干燥 10-15分钟, 以使表面乙醇挥发。 注意不要使沉淀完全干燥, 否则较难重新溶解。 7) 以小体积 TE或水重悬 DNA沉淀。 低速涡旋振荡或用滴管吹 吸, 同时逐渐增加 TE, 混合至 DNA充分溶解, 每 1-5 χ 106细胞所提取的大约加 lul。 Steps: 1) Add 10 volume of 2mol / L sodium acetate and 2 volumes of cold 100% ethanol to the DNA solution and mix. Leave at -20 ° C for 1 hour or overnight. 2) Centrifuge for 10 minutes. 3) Carefully aspirate or pour out the ethanol. 4) Wash the pellet with 500ul of 70% cold ethanol and centrifuge for 5 minutes. 5) Carefully aspirate or pour out the ethanol. Wash the pellet with 500ul of cold ethanol and centrifuge for 5 minutes. 6) Carefully aspirate or pour out the ethanol, then invert on the absorbent paper to drain the residual ethanol. Air-dry for 10-15 minutes to evaporate the surface ethanol. Be careful not to allow the pellet to dry completely, otherwise it will be more difficult to re-dissolve. 7) Resuspend the DNA pellet in a small volume of TE or water. Low-speed vortexing or pipetting, with a dropper, while gradually increasing the TE, mixed until fully dissolved DNA, 106 cells per 1-5 χ extracted plus about lul.
以下第 8-13步骤仅用于必须除去污染时, 否则可直接进行第 14步骤。 The following steps 8-13 are only used when contamination must be removed, otherwise step 14 can be performed directly.
8 )将 RNA酶 A加到 DNA溶液中, 终浓度为 100ug/ml, 37°C保温 30分钟。 9 )加入
SDS和蛋白酶 K, 终浓度分别为 0.5%和 100ug/ml。 37°C保温 30分钟。 10)用等体积 的苯酚: 氯仿: 异戊醇 ( 25: 24: 1 )抽提反应液, 离心 10分钟。 11)小心移出水 相, 用等体积的氯仿: 异戊醇 (24: 1) 重新抽提, 离心 10分钟。 12)小心移出水 相, 加 1/10体积 2mol/L醋酸钠和 2.5体积冷乙醇, 混匀置 -20°C1小时。 13)用 70% 乙醇及 100%乙醇洗涤沉淀, 空气干燥, 重悬核酸, 过程同第 3-6步骤。 14)测定 A26。 和 A28。以检测 DNA的纯度及产率。 15 )分装后存放于 - 20°C。 8) Add RNase A to the DNA solution to a final concentration of 100ug / ml, and incubate at 37 ° C for 30 minutes. 9) Join The final concentrations of SDS and proteinase K were 0.5% and 100ug / ml. Incubate at 37 ° C for 30 minutes. 10) Extract the reaction solution with an equal volume of phenol: chloroform: isoamyl alcohol (25: 24: 1) and centrifuge for 10 minutes. 11) Carefully remove the aqueous phase and re-extract with an equal volume of chloroform: isoamyl alcohol (24: 1) and centrifuge for 10 minutes. 12) Carefully remove the water phase, add 1/10 volume of 2mol / L sodium acetate and 2.5 volume of cold ethanol, mix and let stand at -20 ° C for 1 hour. 13) Wash the precipitate with 70% ethanol and 100% ethanol, air dry, and resuspend the nucleic acid. The process is the same as steps 3-6. 14) Determine A 26 . And A 28 . To detect the purity and yield of DNA. 15) Store at -20 ° C after dispensing.
样膜的制备: Preparation of sample film:
1 )取 4 X 2张适当大小的硝酸纤维素膜(NC膜), 用铅笔在其上轻轻标出点样位置 及样号, 每一探针需两张 NC膜, 以便在后面的实验步骤中分别用高强度条件和强度 条件洗膜 。 1) Take 4 X 2 pieces of nitrocellulose membrane (NC membrane) of appropriate size, and mark the spotting position and sample number on it with a pencil. Two NC membranes are required for each probe, so that it can be used in subsequent experiments. In the step, the film is washed with high-strength conditions and strength conditions, respectively.
2) 吸取及对照各 15微升, 点于样膜上, 在室温中晾干。 2) Pipette and control 15 microliters each, spot on the sample film, and dry at room temperature.
3)置于浸润有 0. Iraol/LNaOH, 1.5mol/LNaCl的滤纸上 5分钟 (两次), 晾干置于 浸润有 0.5mol/L Tris-HCl ( pH7.0), 3mol/LNaCl的滤纸上 5分钟 (两次), 晾干。 3) Place on filter paper impregnated with 0.1 Iraol / LNaOH, 1.5 mol / L NaCl for 5 minutes (twice), dry and place on filter paper impregnated with 0.5 mol / L Tris-HCl (pH 7.0), 3 mol / L NaCl Allow to dry for 5 minutes (twice).
4)夹于干净滤纸中, 以铝箔包好, 60-80°C真空干燥 2小时。 4) Clamped in clean filter paper, wrapped in aluminum foil, and dried under vacuum at 60-80 ° C for 2 hours.
探针的标记 Labeling of probes
1 ) 3 μ lProbe ( 0.1OD/10 μ 1 ), 加入 2 μ lKinase缓冲液, 8-10 uCi y-32P-dATP+2U Kinase, 以补加至终体积 20 μ 1。 1) 3 μl Probe (0.1OD / 10 μ 1), add 2 μl Kinase buffer, 8-10 uCi y- 32 P-dATP + 2U Kinase to make up to a final volume of 20 μ 1.
2) 37 °C 保温 2小时。 2) Incubate at 37 ° C for 2 hours.
3)加 1/5体积的溴酚蓝指示剂 ( BPB \ 3) Add 1/5 volume of bromophenol blue indicator (BPB \
4 )过 Sephadex G- 50柱。 4) Pass Sephadex G-50 column.
5) 至有 32P- Probe洗出前开始收集第一峰(可用 Monitor监测;)。 5) Start collecting the first peak before 32 P-Probe washes out (monitoring can be used to monitor;).
6) 5滴 /管, 收集 10- 15管。 6) 5 drops / tube, collect 10-15 tubes.
7)用液体闪烁仪监测同位素量 7) Monitor the amount of isotope with a liquid scintillator
8)合并第一峰的收集液后即为所需制备的 32P-Probe (第二峰为游离 γ_32Ρ- dATP)。 预杂交 8) The combined solution after the first peak was collected as 32 P-Prob e (the second peak to prepare the desired free γ_ 32 Ρ- dATP). Pre-hybridization
将样膜置于塑料袋中,加入 3- 10mg预杂交液(lOxDenhardt's; 6xSSC, 0. lrag/ml CT DNA (小牛胸腺 DM)。), 封好袋口后, 68°C水浴摇 2小时。 Place the sample film in a plastic bag, add 3-10 mg of prehybridization solution (lOxDenhardt's; 6xSSC, 0.1 lrag / ml CT DNA (calf thymus DM).), Seal the bag, and shake at 68 ° C for 2 hours .
杂交 Cross
将塑料袋剪去一角, 加入制备好的探针, 封好袋口后, 42°C水浴摇过夜。 Cut a corner of the plastic bag, add the prepared probe, seal the bag, and shake it at 42 ° C in a water bath overnight.
洗膜: Wash film:
高强度洗膜: High-intensity washing film:
1) 取出已杂交好的样膜。
2 ) 2xSSC, 0. 1%SDS中, 40°C洗 15分钟 ( 2次)。 1) Take out the hybridized sample membrane. 2) 2xSSC, 0.1% SDS, wash at 40 ° C for 15 minutes (twice).
3 ) 0. lxSSC, 0. 1%SDS中 , 40°C洗 15分钟 ( 2次)。 3) Wash in 0.1xSSC, 0.1% SDS at 40 ° C for 15 minutes (twice).
4 ) 0. lxSSC, 0. 1%SDS中, 55°C洗 30分钟 ( 2次), 室温晾干。 低强度洗膜: 4) Wash in 0.1xSSC, 0.1% SDS at 55 ° C for 30 minutes (twice), and dry at room temperature. Low-intensity washing film:
1 )取出已杂交好的样膜。 1) Take out the hybridized sample membrane.
2 ) 2xSSC, 0. 1%SDS中 , 37。C洗 15分钟 ( 2次)。 2) 2xSSC, 0.1% SDS, 37. C Wash for 15 minutes (twice).
3 ) 0. lxSSC, 0. 1%SDS中 , 37°C洗 15分钟 ( 2次)。 3) Wash in 0.1xSSC, 0.1% SDS at 37 ° C for 15 minutes (twice).
4 ) 0. lxSSC, 0. 1%SDS中, 40°C洗 15分钟 ( 2次), 室温晾干。 4) Wash in 0.1xSSC, 0.1% SDS at 40 ° C for 15 minutes (twice), and dry at room temperature.
X -光自显影: X-ray autoradiography:
- 70°C, X-光自显影 (压片时间根据杂交斑放射性强弱而定)。 -70 ° C, X-ray autoradiography (compression time depends on the radioactivity of the hybrid spot).
实验结果: Experimental results:
采用低强度洗膜条件所进行的杂交实验, 以上两个探针杂交斑放射 强弱没有 明显区别; 而釆用高强度洗膜条件所进行的杂交实验, 探针 1 的杂交斑放射性强度 明显强于另一个探针杂交斑的放射性强度。 因而可用探针 1 定性和定量地分析本发 明的多核苷酸在不同组织中的存在和差异表达。 实施例 7 DNA Mi croarray The hybridization experiments performed under low-intensity membrane washing conditions showed no significant difference in the radiation intensity of the above two probes. However, in the hybridization experiments performed under high-intensity membrane washing conditions, the radioactive intensity of probe 1 was significantly stronger. To the radioactive intensity of the hybridization spot of another probe. Therefore, probe 1 can be used to qualitatively and quantitatively analyze the presence and differential expression of the polynucleotide of the present invention in different tissues. Example 7 DNA Mi croarray
基因芯片或基因微矩阵 (DNA Microarray )是目前许多国家实验室和大制药公 司都在着手研制和开发的新技术, 它是指将大量的靶基因片段有序地、 高密度地排 列在玻璃、 硅等载体上, 然后用荧光检测和计算机软件进行数据的比较和分析, 以 达到快速、 高效、 高通量地分析生物信息的目的。 本发明的多核苷酸可作为靶 DNA 用于基因芯片技术用于高通量研究新基因功能; 寻找和筛选组织特异性新基因特别 是肿瘤等疾病相关新基因; 疾病的诊断, 如遗传性疾病。 其具体方法步骤在'文献中 已有多种报道, 如可参阅文献 DeR i s i , J. L. , Lyer, V. &Brown, P. 0. Gene chip or DNA microarray is a new technology that many national laboratories and large pharmaceutical companies are currently developing and developing. It refers to the orderly and high-density arrangement of a large number of target gene fragments on glass, The data is compared and analyzed on a carrier such as silicon using fluorescence detection and computer software to achieve the purpose of fast, efficient, and high-throughput analysis of biological information. The polynucleotide of the present invention can be used as target DNA for gene chip technology for high-throughput research of new gene functions; search for and screen new tissue-specific genes, especially new genes related to diseases such as tumors; diagnosis of diseases such as hereditary diseases . The specific method steps have been reported in the literature, for example, see the literature DeR i s i, J. L., Lyer, V. & Brown, P. 0.
(1997) Sc ience278, 680-686.及文献 He l le, R. A. , Schema, M. , Cha i , A., Sha lom, D. , (1997) PNAS 94: 2150-2155. (1997) Science 278, 680-686. And Hell, R. A., Schema, M., Cha i, A., Sha lom, D., (1997) PNAS 94: 2150-2155.
(一 ) 点样 (A) spotting
各种不同的全长 cDNA共计 4000条多核苷酸序列作为靶 DNA,其中包括本发明的 多核苷酸。 将它们分别通过 PCR 进行扩增, 纯化所得扩增产物后将其浓度调到 500ng/ul左右,用 Cartes ian 7500点样仪(购自美国 Cartes ian公司)点于玻璃介质
上, 点与点之间的距离为 280 μιη。 将点样后的玻片进行水合、 干燥、 置于紫外交联 仪中交联, 洗脱后干燥使 DNA固定在玻璃片上制备成芯片。 其具体方法步骤在文献 中已有多种报道, 本实施例的点样后处理步骤是: A total of 4,000 polynucleotide sequences of various full-length cDNAs are used as target DNA, including the polynucleotide of the present invention. They were respectively amplified by PCR. After purification, the amplified product was adjusted to a concentration of about 500 ng / ul, and spotted on a glass medium with a Cartesian 7500 spotting instrument (purchased from Cartesian Company, USA). The distance between points is 280 μm. The spotted slides were hydrated, dried, and cross-linked in a UV cross-linker. After elution, the slides were fixed to fix the DNA on the glass slides to prepare chips. The specific method steps have been variously reported in the literature. The post-spot processing steps of this embodiment are:
1. 潮湿环境中水合 4小时; 1. Hydration in a humid environment for 4 hours;
2. 0.2%SDS洗涤 1分钟; 2. 0.2% SDS was washed for 1 minute;
3. ddH20洗涤两次, 每次 1分钟; 3. Wash twice with ddH 2 0 for 1 minute each time;
4. NaBH4封闭 5分钟; 4. NaBH 4 is blocked for 5 minutes;
5. 95°C水中 2分钟; 5. 95 ° C water for 2 minutes;
6. 0.2%SDS洗涤 1分钟; 6. Wash with 0.2% SDS for 1 minute;
7. ddH20冲洗两次; 7. Rinse twice with ddH 2 0;
8. 凉干, 25°C储存于暗处备用。 8. Dry and store at 25 ° C in the dark for future use.
(二)探针标记 (Two) probe marking
用一步法分别从人体混合组织与机体特定组织(或经过刺激的细胞株)中抽提 总 mRNA, 并用 Oligotex mRNA Midi Kit (购自 QiaGen公司)纯化 mRNA,通过反转录分 另 !j将焚光试剂 Cy3dUTP (5 - Amino-propargyl-2'_deoxyuridine 5'- triphate coupled to Cy3 fluorescent dye, 购自 Amersham Phamacia Biotech公司)标记人体混合组 织的 mRNA, 用荧光试剂 Cy5dUTP(5- Amino- propargy卜 2'- deoxyuridine 5'- triphate coupled to Cy5 fluorescent dye, 购自 Amersham Phamacia Biotech公司)标记机 体特定组织 (或经过刺激的细胞株) mRNA, 经纯化后制备出探针。 具体步骤参照及 方法见: Total mRNA was extracted from human mixed tissues and specific tissues (or stimulated cell lines) in one step, and the mRNA was purified using Oligotex mRNA Midi Kit (purchased from QiaGen), and separated by reverse transcription. Photo reagent Cy3dUTP (5-Amino-propargyl-2'_deoxyuridine 5'-triphate coupled to Cy3 fluorescent dye, purchased from Amersham Phamacia Biotech) was used to label mRNA of human mixed tissue, and the fluorescent reagent Cy5dUTP (5- Amino-propargy 2 2 ' -deoxyuridine 5'-triphate coupled to Cy5 fluorescent dye (purchased from Amersham Phamacia Biotech) was used to label the mRNA of specific tissues (or stimulated cell lines) of the body, and probes were prepared after purification. For specific steps and methods, see:
Schena, Schena,
M. , Shalon, D. , Heller, R. (1996) Proc. Natl. Acad. Sci. USA. Vol.93: 10614-10619. Sc hena, M., Shalon, Dari. , Davis, R. W. (1995) Science.270. (20): 467-480. M., Shalon, D., Heller, R. (1996) Proc. Natl. Acad. Sci. USA. Vol. 93: 10614-10619. Sc hena, M., Shalon, Dari., Davis, RW (1995) Science.270. (20): 467-480.
(三) 杂交 (Three) cross
分别将来自 以上两种组织的探针与芯片一起在 UniHyb™ Hybridization Combine the probes from the two tissues with the chips in UniHyb ™ Hybridization
Solution (购自 TeleChem 公司)杂交液中进行杂交 16 小时, 室温用洗涤液 (l x SSC, 0.2¾SDS )洗涤后用 ScanArray 3000扫描仪(购自美国 General Scanning公司 ) 进行扫描, 扫描的图象用 Imagene软件(美国 Biodiscovery公司)进行数据分析处 理, 算出每个点的 Cy3/Cy5比值。 Solution (purchased from TeleChem) was used for hybridization for 16 hours, and washed with a washing solution (lx SSC, 0.2¾SDS) at room temperature, and then scanned with a ScanArray 3000 scanner (purchased from General Scanning, USA). Software (American Biodiscovery company) performs data analysis and processing to calculate the Cy3 / Cy5 ratio of each point.
以上机体特定组织(或经过刺激的细胞株)分别为膀胱粘膜、 PMA+的 Ecv304细胞 株、 LPS+的 Ecv304细胞株胸腺、正常成纤维细胞 1024NC、 Fibroblast, 生长因子刺激, 1024NT, 疤痕成 fc生长因子刺激, 1013HT、 疤痕成 fc未用生长因子刺激, 1013HC、 膀
胱癌建株细胞 EJ、 膀胱癌旁、 膀胱癌、 肝癌、 肝癌细胞株、 胎皮、 脾脏、 前列腺癌、 空肠腺癌、 贲门癌。 根据这 17个 Cy3/Cy5比值绘出折方图。 (图 1 )。 由图可见本发明 所述的补体受体 12和补体受体表达谱很相似。
The above specific tissues (or stimulated cell lines) are bladder mucosa, PMA + Ecv304 cell line, LPS + Ecv304 cell line thymus, normal fibroblasts 1024NC, Fibroblast, growth factor stimulation, 1024NT, scar into fc growth factor stimulation 1013HT, scar into fc without stimulation with growth factor, 1013HC, bladder Cystocarcinoma cells EJ, bladder cancer, bladder cancer, liver cancer, liver cancer cell lines, placenta, spleen, prostate cancer, jejunal adenocarcinoma, cardia cancer. Draw a chart based on these 17 Cy3 / Cy5 ratios. (figure 1 ). It can be seen from the figure that the complement receptor 12 and complement receptor expression profiles according to the present invention are very similar.