F OCCULATED MICROBIAL INOCULANTS FOR DELIVERY OF AGRICULTURALLY BENEFICIAL MICROORGANISMS
FIELD OF THE INVENTION
This invention relates to the use of microorganisms to enhance crop productivity and, more specifically, to the use of flocculated forms of bacteria, particularly Azospirillum, Rhizobium, or a combination thereof, as crop inoculants and delivery systems for other agriculturally beneficial microorganisms.
BACKGROUND OF THE INVENTION
Many microorganisms are known to exert beneficial effects on plant growth. Among these are the well-known nitrogen-fixing Rhizobium species, which are symbionts of leguminous species. Azospirillum species, which are free-living nitrogen- fixing bacteria associated with the roots of grasses, are also now recognized for their plant growth- promoting qualities.
It has been shown that Azospirillum can be induced to transform from vegetative cells to desiccation-resistant encysting forms under limiting cultural conditions (i.e., culture media providing the minimal amount of nutrients required for growth) . This transformation is accompanied by the overproduction of exocellular polymers that cause aggregation and extensive flocculation of the cells in culture. Sadasivan et al. , J. Bact., 163: 716-23 (1985) .
Rhizobium species have also been observed to flocculate in culture medium and in association with roots. Napoli et al. , App. Microbiol., 3_0_: 123'-31 (1975); Deinema et al. , Arch. Mikrobiol. , 78.: 42-57 (1971) . Unlike Azospirillum, flocculation dynamics of
Rhizobium heretofore have not been studied. No distinctions have been made between microscopic aggregates and the massive aggregation of cells characteristic of Azospirillum cultured under specified conditions (e.g., suitable carbon source, low nitrogen content and high C:N ratio) .
Inoculation of seeds or soil with beneficial microorganisms for crop improvement has been practiced for a number of years. However, variable and inconsistent results have often been obtained due to loss of inoculant viability or variability of dosage due to changes in inoculant viability. Okon et al., CRC Crit. Rev. Biotechnology, 6.: 61-85 (1987) .
One of the most commonly used carriers for commercial inoculants of agriculaturally beneficial microorganisms is peat. For Rhibozium and Azospirillum species, bacteria are cultured in fermentors to reach high population levels (i.e., ~ 109 cells/ml), then added to pre-sterilized peat. The inoculum thereafter may be applied to seeds (by preparing a slurry containing the peat/bacteria mixture and gums or sugars to improve adhesion) , by applying directly to soil (e.g., by dripping peat suspensions into planting furrows) or by mixing with other planting media. Okon et al. , supra . Each of these delivery methods suffers from inconsistent dosage due to loss of viability under varied seed storage or field condition. Okon et al. , supra . Several other formulations of crop inoculants have been proposed in an attempt to overcome problems with loss of viability and inconsistent dosage. These methods involve entrapment of living cells in various biopolymers, such as polyacrylami.de (Dommergues et al. , Appl. Environ. Microbiol. , 3_7: 779-81, 1979), xanthan and carob gums (Mugnier et al. , Appl. Environ. Microbiol., 5_0: 108-
114, 1985) and alginate (Bashan, Appl. Environ. Microbiol., 51: 1089-98, 1986; Pages, Appl. Microbiol. Biotechnol., 3 : 473-78, 1990). Although entrapment of microorganisms in biopolymers increases the concentration and stability of inoculants, the production of such inoculants often involves multiple steps and requires specialized equipment. For example, one method of preparing alginate beads carrying Azospirillum involves the following steps: (1) growing Azospirillum in nutrient broth; (2) adding sodium alginate, along with various other ingredients, to the culture broth containing the Azospirillum cells; (3) extruding the mixture under pressure through 1 mm plastic nozzles, the resulting drops being projected into a 6 g/1 CaCl2 solution to form alginate beads containing entrapped bacteria; (4) removing the CaCl2 solution; and (5) dehydrating the beads by air-drying, freeze-drying or oven-drying. Fages, Appl. Microbiol. Biotechnol., 3_2: 473-78 (1990) . Such methods are time-consuming and can be expensive. Moreover, bacteria entrapped in alginate beads may not adhere well to seeds, and therefore, may not be optimally suitable for coating seeds with inoculant. The agricultural industry would clearly benefit from a simple, less expensive method of providing microbial inoculants for plants, seeds and soil.
SUMMARY OF THE INVENTION In accordance with the present invention, a simple, rapid method is provided for producing a crop inoculant for delivery of agriculturally beneficial microorganisms. The method utilizes the biological property of certain bacteria, such as Azospirillum, Rhizobium and Zooglia, among others, wherein, under pre-determined culture conditions, bacterial cells
differentiate into an encysted form and aggregate together to produce a flocculent form. Flocculation under these conditions is so extensive that the flocculent sinks to the bottom of a culture medium container, and is readily separable from the medium. According to one aspect of the present invention, a method is provided for delivering a microorganism to a plant, for purposes of improving plant productivity. The plant is inoculated with a microbial inoculant comprising a flocculated form of the microorganism, preferably Azospirillum or Rhizobium, or a combination thereof. Plants may be inoculated in a variety of ways, including coating seeds of the plant with the inoculant, mixing the inoculant into planting and germination mixtures or seed priming media, or applying the inoculant to aboveground portions of plants.
According to another aspect of the present invention, there is provided a microbial inoculant for a plant, which comprises a flocculated form of bacterium, preferably Azospirillum or Rhizobium, or a combination thereof. In a preferred embodiment, the inoculant further comprises at least one other microorganism. The microbial inoculant is prepared by culturing the bacterium and, optionally, the other microorganism(s) in a flocculation growth medium, then transferring log-phase cells to a medium comprising mineral salts and organic acids necessary for microbial growth, a carbon source and a nitrogen source, the ratio of carbon to nitrogen in the medium being at least 30:1 and preferably about 80:1. The culture is placed under conditions promoting the growth of each microorganism and flocculation of the bacterium, thereby forming a co-floc. comprising the flocculated bacterium and the other microorganism(s) . The co-floc is then harvested to produce a microbial
inoculant comprising the flocculated bacterium, which may also comprise at least one other microorganism. In a preferred embodiment of the present invention, a co-floc comprising both Azospirillum and Rhizobium is prepared as a microbial inoculant for a plant. Because both Azospirillum and Rhizobium flocculate extensively in the flocculation medium, a co-floc comprising both bacteria in flocculated form is easily produced. This microbial inoculant is prepared by culturing Azospirillum species and Rhizobium species in a growth medium, then transferring log-phase cells to a flocculation medium comprising mineral salts and organic acids necessary for microbial growth, a carbon source and a nitrogen source, the ratio of carbon to nitrogen in the medium being at least 30:1 and preferably about 80:1. The culture is placed under conditions promoting the growth and flocculation of both bacteria, thereby forming a co-floc, which is then harvested to produce a microbial inoculant comprising both bacteria in a flocculated form.
The above-described microbial inoculant is used to inoculate seeds. According to another aspect of the present invention, a coated seed is provided in which the seed coating comprises a flocculated form of bacterium, preferably Azospirillum and/or Rhizobium and, optionally, at least one other microorganism.
According to another aspect of the invention, a planting mixture is provided which comprises a planting medium and a microbial inoculant comprising a flocculated form of bacterium, preferably Azospirillum and/or Rhizobium and, optionally, at least one other microorganism.
According to a further aspect of the invention, a seed priming medium is provided which comprises a solid matrix and a microbial inoculant
comprising a flocculated form of bacterium, preferably Azospirillum and/or Rhizobium and, optionally, at least one other microorganism.
The use of flocculated bacteria as an inoculant and delivery system for other microorganisms provides many advantages over current systems for providing inoculant. Flocculated bacterial cells, such as Azospirillum and Rhizobium, are produced in standard batch cultures or fermentors, using media that induces cell differentiation and aggregation. These bacterial aggregates, i.e., floes, form large clumps that separate easily from culture fluid upon standing for a few minutes. Therefore, separation of the inoculant does not require special centrifugation procedures.
Inoculum produced by flocculating bacteria possesses a long shelf life. Floes can be stored moist, under refrigeration, or can be air-dried and stored for long period of time. Seeds and floes can be mixed and stored for several months. Flocculated bacteria possess enhanced survivability on dry surfaces such as seeds and soil, due to the presence of many bacterial cells in encysted form, which confers desiccation resistance and prolongs cell viability. Flocculated bacterial cells exude an extensive polysaccharide network, which also contributes to the enhanced survivability and shelf life of the floes. Additionally, the polysaccharide matrix enhances adhesiveness of the inoculant to solid surfaces, such as seeds. Therefore, there is no need to pre-treat seeds with an adhesive before applying the inoculant.
Another significant advantage of using flocculated bacteria is that other plant growth- promoting microorganisms can be co-flocculated with the flocculating bacteria to produce an inoculant
containing multiple agriculturally beneficial microorganisms. The polysaccharide network of bacterial floes confers a certain amount of stability on these other co-flocculated microorganisms as well.
DETAILED DESCRIPTION OF THE INVENTION
The following words and phrases are defined for reference in the specification as follows:
1. Flocculation: The process of cell differentation and aggregation undergone by certain microorganisms in response to environmental or chemical stimuli, involving the production of a massive biopolymer network to form macroscopic cell aggregates. Cells may be induced to flocculate by altering the nutrient culture conditions under which cells are grown, or by the addition of various chemical agents, according to methods commonly known in the art.
2. Floe, Flocculent: The fluffy mass formed by the aggregation of microbial cells undergoing flocculation. In the present invention, bacterial floes are macroscopic aggregates that settle to the bottom of a liquid culture upon standing. This type of macroscopic flocculation is also observable as a reduction in optical density of a liquid culture, due to settling of the bacterial floes. The term "flocculent" is also sometimes used herein as a noun, interchangeably with the term "floe". The term "flocculent" is also used as an adjective to describe the growth pattern of cells in the process of flocculation, i.e., a "flocculent" growth or growth pattern.
3. Co-floc, Co-flocculation: The product of (or process of) co-culturing two flocculating microorganisms, such as Azospirillum and Rhizobium, or of co-cultivating one or more flocculating
microorganisms with one or more additional non- flocculating microorganisms. This involves inoculating the bacterial culture with the additional microorganisms prior to flocculation, such that the additional microorganisms are entrapped in the biopolymer network produced by the flocculating bacteria.
4. Mixed floe: The product of combining already-flocculated bacteria with at least one additional microorganism. Mixed floes are different from co-floes in that the additional microorganisms are mixed with flocculated bacteria after flocculation, instead of prior to flocculation, as in co-fIocs. 5. Microbial inoculant, inoculum: An inoculant or inoculum composed of one or more microorganisms, at least one of which is a flocculating microorganism, such as Azospirillum and/or Rhizobium. These microbial inoculants are utilized in the present invention for delivering beneficial microorganisms to plants.
6. Plant productivity, crop productivity: Refers generally to any aspect of growth or development of a plant that is a reason for which the plant is grown. For example, when referring to food crops, such as grains or vegetables, crop productivity generally refers to the yield of grain or fruit, etc., harvested from a particular crop. However, for "crops" such as turf grass, plant productivity may refer to growth rate, turf density, disease resistance or the like. Thus, for purposes of the present invention, improved plant or crop productivity refers broadly to improvements in yield of grain, fruit, flowers, or other plant parts harvested for various purposes, improvements in growth of plant parts, including stems, leaves and roots, improved resistance
to disease, improved survivability in extreme climate, and similar improvements to the growth and development of plants.
The phenomenon of flocculation has been extensively studied as a model system to understand cell-cell interaction in aggregated forms. Flocculation is of major interest in the brewing industry, as flocculated yeast are utilized extensively as inoculants. However, use of flocculated cells for agricultural purposes is novel, and its use in delivery of plant beneficial microorganisms should substantially enhance crop productivity.
In accordance with the present invention, a flocculated bacterium, such as Azospirillum and/or
Rhizobium, is utilized as a high-density crop inoculum and delivery system for one or more agriculturally beneficial microorganisms. Flocculated microorganisms possess superior stability and adhesive characteristics, as compared with crop inoculants heretofore available.
Any microorganism that can be induced to flocculate can be utilized in the practice of the present invention. The most useful microorganisms are those such as Azospirillum or Rhizobium, which can be induced to flocculate simply by growing them in a nutrient-limited culture medium.
In accordance with the present invention, it has also been determined that Zooglia spp. can be induced to flocculate under the same culture conditions as Azospirillum or RhizoJbium. Thus, although any flocculating species is contemplated for use in the present invention, Azospirillum and/or RhizoJbium will be exemplified in the detailed description set forth herein below, which describes
how to make and use the flocculated microbial crop inoculants of the present invention.
I. PREPARATION OF MICROBIAL FLOCS
AND CO-FLOCS
In a preferred embodiment, bacteria such as Azospirillum and/or RhizoJbium are induced to flocculate by growing them under specific culture conditions. As described above, floes produced under such conditions are of a macroscopic, rather than microscopic nature, forming large clumps that can be easily separated from the culture medium.
Azospirillum brasilense and Azospirillum lipoferum are known to grow well in culture media on a variety of carbon sources, and either species may be utilized in the present invention. Various cultured strains of A. brasilense and A . lipoferum are widely available. A. brasilense Sp7 (ATCC Accession No. 29145) and A . lipoferum 59b (ATCC Accession No. 29707) may be obtained from the American Type Culture
Collection, Rockville, Maryland. See Sadasivan et al., J. Bact., 163: 716-23 (1985). Natural isolates of Azospirillum may also be utilized in the present invention. Other flocculating bacteria, such as
RhozoJbiu spp. , may also be utilized according to the methods described herein for Azospirillum. Rhizobium leguminosarum bv Phaseoli (USDA National RhizoJbium Culture Collection Strain No. 2743) is one example of a RhizoJbium species that grows well in culture and flocculates readily under the specific culture conditions described herein. This and other species of RhizoJbium are commonly available.
Cultured Azospirillum or RhizoJbium species may be induced to shift to a cyst-forming morphology and to flocculate, by growing the cells under specific
culture conditions. A suitable culture medium comprises mineral salts essential for bacterial growth, a carbon source and a nitrogen source. The ratio of carbon to nitrogen in the culture medium is important for the control and induction of flocculation. The carbon to nitrogen ratio should be at least 30:1. In a preferred embodiment, the ratio is at least 50:1, and, most preferably, about 80:1.
A carbon source for the Azospirillum growth medium may be selected from the group including malate, gluconate, α-ketoglutarate, succinate, fructose and glucose. Other carbon sources may also be useful, and these can be determined easily by one skilled in the art. Fructose is preferred for producing Azospirillum-based inoculants in the practice of the present invention because both A. brasilense and A. lipoferum display excellent flocculent growth when fructose is used as the carbon source. Gluconate induces good floe formation in both species, whereas α-ketoglutarate and glucose induce floe formation of A. lipoferum but not of A . brasilense . See Sadasivan et al. , J. Bact., 163: 716- 23 (1985) . Succinate is preferred for producing inoculants comprising co-floes of Rhizobium and Azospirillum, since both bacteria flocculate well when succinate is used as the carbon source.
If fructose or succinate is used as the carbon source, it should be provided at a concentration of between 5-100 mM. In a preferred embodiment, 8-10 mM fructose or succinate is used.
Nitrogen sources useful in the growth medium of the present invention include potassium nitrate (KN03) , ammonium nitrate (NH4N03) and glutamate. Other nitrogen sources may also be useful. Potassium nitrate is preferred in the practice of the present invention because, when used in conjunction with 8 mM
fructose or succinate, it induces excellent flocculent growth of both A . brasilense and A. lipoferum, as well as Rhizobium leguminosarum. Potassium nitrate should be provided at a concentration of between 0.2-1.0 mM. In a preferred embodiment, 0.5 mM KN03 is used.
Thus, a preferred medium for growth and flocculation of Azospirillum species comprises 8 mM fructose and 0.5 mM KN03 in minimal medium. Minimal medium is defined herein as a medium comprising mineral salts and, optionally, organic acids and trace amounts of other components, necessary for growth of a particular microorganism. The formulation of minimal media for microbial culture is well known in the art. A preferred minimal medium for culture of Azospirillum species comprises the following ingredients: 0.2 g/1 MgS04-7H20; 0.1 g/1 NaCl; 0.02 g/1 CaCl2; 0.06 g/1 Fe(EDTA); 0.02 g/1 Na2Mo04 -2H20; 0.01 g/1 MnS04 -H20; 4.9 g/1 KOH; 5.0 g/1 malic acid; 0.02 g/1 yeast extract (Difco) ; in a 10 mM phosphate buffer, final pH adjusted to 6.8. Variations and substitutions in this type of minimal medium can be made, and will be apparent to those skilled in the art. The preparation of Azospirillum growth medium for producing a flocculent growth pattern is set forth in greater detail in Example 1 below.
A preferred medium for growth and flocculation of RhizoJbium species or Azospirillum and RhizoJbium species combined comprises 8 mM succinate and 0.5 mM KN03 in minimal medium, as described above. The preparation of growth medium for RhizoJbium or Rhizobium/Azospirillum for producing a flocculent growth pattern is the same as set forth for Azospirillum in Example 1 below.
Liquid cultures of Azospirillum and/or RhizoJbium are grown according to standard methods.
Inocula are grown in nutrient-rich media and log-phase
cultures transferred to the flocculation media described above. Flocculation media are generally inoculated to an optical density of between 0.3 and 1.0. Small culture batches may be incubated at 30- 35°C on a Gyrotory shaker (New Brunswick Scientific
Company, Inc., Edison, New Jersey) at 200 rpm for 18- 24 hours. For larger batches, cultures may be grown in an aerated fermentor at 30-35°C overnight. During the incubation period, the bacteria multiply and flocculate., and can be harvested on the following day.
Azospirillum and/or RhizoJbium floes readily settle to the bottom of a liquid culture, if left to stand. Hence, floes are easy to harvest, without a necessity for centrifugation. Culture medium is decanted from the floes, which thereafter may be stored or used as wet floes, or may be dried, e.g., by air drying. Alternatively, culture medium may be removed from flocculents by coarse filtration methods (i.e., through fine mesh, cloth or porous filter paper) , and thereafter used or stored as wet floes, or dried.
Harvested Azospirillum and/or Rhizobium floes provide a high density inoculum containing approximately 1011 cells/gm of wet floe or 1012 cells/gm of dry floe. Flocculated inoculum may be stored for long periods of time with no appreciable loss of cell viability, as described in greater detail for Azospirillum in Example 1 below.
According to another aspect of the present invention, flocculated bacteria, such as Azospirillum or RhizoJbium, or a combination thereof, can be used for the delivery of other microorganisms that confer beneficial properties to plants, such as nitrogen fixation, production of secondary metabolites, production of antibiotics useful in biological control of plant pests and production of plant growth
regulators. Other bacteria are preferred for delivery by flocculated bacteria in the present invention; however, other classes of microorganisms (e.g., cyanobacteria or fungi) may also be utilized. These other agriculturally beneficial microorganisms are prepared for delivery by flocculated Azospirillum and/or RhizoJbium, for example, simply by co-culturing the selected microorganism with Azospirillum and/or RhizoJbium in appropriate medium, as described above. The cells become entrapped in the floes, to produce an inoculant comprising the flocculating bacterium and the additional microorganism (sometimes referred to herein as a "co-floc") . Co-floes of Azospirillum and RhizoJbium, produced by co-cultivation and flocculation of the co-cultivated species, are described hereinabove. It should be noted that unless, like Azospirillum and RhizoJbium co-floes, the selected microorganism itself differentiates (i.e., becomes encysted) under the same culture conditions as Azospirillum or RhizoJbium, that the additional microorganism may not possess the longevity of encysted Azospirillum or RhizoJbium cells. Even so, the polysaccharide matrix comprising the floe confers a certain amount of protection to the other microorganisms, as demonstrated in Example 2 below.
Bacterial floes containing additional beneficial microorganisms are preferably stored under refrigeration, or frozen, as wet floe, instead of being dried. However, drying may be suitable for some of these additional microorganisms, as can be easily determined empirically by one skilled in the art.
In an alternative embodiment, additional microorganisms may be mixed with Azospirillum, RhizoJbium or other flocculating bacteria subsequent to flocculation (sometimes referred to herein as
"mixed floes") . However, in mixed floes, the additional microorganisms do not become as securely entrapped in the biopolymer matrix of the flocculated bacteria as they do in co-floes, as shown in Example 2.
Beneficial microorganisms having similar growth rates are preferred for use in the production of co-flocs. Bacteria having slower or faster growth rates may also be utilized, but the initial concentration of cells used to inoculate the liquid culture should be adjusted to take into account the difference in growth rate. Examples of bacterial species that may be successfully co-flocculated with Azospirillum and/or RhizoJbium, for example, include Bacillus spp. and Enterobacter spp. , certain of which have antifungal or insecticidal properties, and Pseudomonas spp. , certain species of which (e.g., P. putida) enhance nodulation in leguminous plants and other species of which (e.g., P. gladioli) possess anti-fungal activity. Examples of the preparation and use of co-flocs and mixed floes of Azospirillum comprising these microorganisms are set forth in Example 2 below.
II. USE OF FLOCCULATED MICROBIAL INOCULANTS
TO IMPROVE CROP PRODUCTIVITY
Application of flocculated microbial inoculants for agricultural purposes includes several simple techniques, such as coating seeds with the inoculant, mixing the inoculant into soil or germination media and spraying the inoculant onto various portions of plants. Such methods are familiar to agronomists and do not call for sophistication in processing and equipment. Because of the simplicity of the procedures involved, use of flocculated microbial inoculant is cost-ef ective. Furthermore,
because of the adhesive nature of the floes, there should be no need for the use of additional carriers or adhesive materials. Also, since the floe material is a biopolymer, it is easily degradable in soil and should not present an environmental hazard.
Seeds may be coated with flocculated microbial inoculants simply by mixing wet floes with dry seeds or alternatively, dry floes with wet seeds during seed priming, to aid in the attachment of floes to seeds surfaces. For example, 10 ml of flocculated Azospirillum contains approximately 10π cells. The floe may be air dried or kept moist. This amount of floe, when combined with one pound of seed (e.g., grass seed) results in a seed coating of approximately 105-106 cells/seed. Such coating is sufficient to impart the beneficial effect of the bacteria, as discussed in greater detail in Example 3 below. The amount of inoculant to be applied to other types of seeds may be easily determined by one skilled in the art. Survival of flocculated Azospirillum on grass seed is described more fully in Example 3 below. Flocculated Azospirillum inoculant is particularly useful for coating various grass seeds, since these organisms are found naturally in association with grasses, including economically important turf grasses, as well as agronomically important cereal crops, such as corn. See Lamm et al., Can. J. Microbiol., 22: 1320-25 (1981). Similarly, flocculated Rhizobium inoculant is particularly useful for coating seeds of leguminous plants, since various rhizobia are symbionts with roots of legumes, forming root nodules in which the bacteria fix atmospheric nitrogen. It has been discovered in accordance with the present invention that inoculants of flocculated RhizoJbium enhance the nodulation process as compared to non-flocculated
RhizoJbium inoculants. Moreover, co-flocs of RhizoJbium and Azospirillum have been found to even further enhance nodulation of leguminous roots. These observations are described in detail in Example 6 below.
Bacterial co-flocs containing other beneficial microorganisms are useful for a wide variety of seeds, including vegetable seeds, such as tomato, pepper, radish and eggplant. In accordance with the present invention, Azospirillum floes have been found to adhere well to such vegetable seeds.
Flocculated microbial inoculants may also be used to inoculate planting media, such as soil, potting mixtures, or other germination mixtures prior to planting seeds. This is accomplished simply by mixing floes (preferably dry) with planting mixtures (at a rate of, e.g., approximately 106 cells/gm). Dry floes can be mixed with dry planting mixtures and stored for extended periods of time before use. Survival of Azospirillum floes in soil and other germination mixtures is described more fully in Example 4 below.
In a preferred embodiment of the present invention, flocculated microbial inoculants are utilized to advantage in seed priming, a method of controlled hydration in which germination is initiated at a proper temperature, oxygen and water potential. Seed priming is a pre-sowing treatment developed to improve seedling emergence and establishment. The treatment involves placing seeds in an osmotic medium of pre-determined water potential. Under these conditions, seeds are able to imbibe water and complete early phases of germination, under sufficient water stress to prevent the completion of germination (i.e., emergence of the radicle).
In the practice of the present invention, a preferred method of priming seeds is through the use of a solid matrix system based on controlling water availability to the germinating seeds by matrix potential. Seeds are primed using a specific amount of water, solid matrix and seeds, such as that disclosed in U.S. Patent No. 4,912,874 (April 3, 1990) . For example, a combination of vermiculite and polyethylene glycol has been utilized for osmoconditioning seeds. Vermiculite and water in a closed container has also been utilized. These solid matrices may be dried and mixed with dry flocculated microbial inoculum and stored for future use. Alternatively, mixtures of seed priming matrix and inoculant may be combined moist and stored under refrigeration or used immediately. Under either circumstance, flocculated microorganisms, such as Azospirillum and/or RhizoJbium, provide an ideal inoculant for seed priming systems utilizing solid matrices.
Bacterial floes and co-flocs may also be mixed with field soil prior to planting for improving crop productivity. This may be accomplished by spreading and mixing floe along with fertilizers or other pre-planting soil treatment. Such methods are well known to agronomists.
Flocculated microbial inoculants may also be applied to selected portions of plants to improve crop productivity. As one example, wet or dry floes may be sprayed on the lower leaf portions of turfgrass sod patches to promote root growth. As another example, co-flocs comprising bacteria that produce antifungal or insecticidal compounds (e.g., Bacillus spp., Pseudomonas spp.) may be sprayed on plant leaves and stems as a biological control of such pests and
pathogens. Alternatively, they may be applied as a seed coating to protect the newly-emerging root. The present invention provides for the application of flocculated forms of microorganisms as a source of crop inoculant and delivery system for other agronomically beneficial microorganisms. Flocculated microbial inoculants possess enhanced survivability on dry surfaces such as seeds of turf, forage and grain grasses for prolonged storage. The process is likewise useful for use with vegetable seeds, and is compatible with mixing various soil and germination media. The microenvironment of flocculated microorganisms is highly protective against physical and chemical stresses and provides a safe niche for survival and cell release upon seed sowing in favorable surroundings.
Flocculated microbial inoculants are prepared and applied according to simple, inexpensive techniques. Hence, microbial floes, either alone or in combination with other beneficial microorganisms, provide a superior method of delivering agronomically useful microbes for increased crop productivity. The following examples are provided to describe the invention in further detail. These examples are intended merely to illustrate and not to limit the invention.
EXAMPLE 1 Preparation and Survival Characteristics of Flocculated Azospirillum
Flocculation of Azospirillum brasilense Sp7 (ATCC 29145) and Azospirillum lipoferum Sp59b (ATCC 29707) was accomplished according to the following method.. A liquid growth medium (sometimes referred to herein as "flocculation medium"), containing minimal salts medium, 8 mM fructose and 0.5 mM KN03, was
prepared. The minimal salts medium contained the following ingredients: 0.2 g/1 MgS04 -7H20; 0.1 g/1 NaCl; 0.02 g/1 CaCl2; 0.06 g/1 Fe(EDTA) ; 0.02 g/1 Na2Mo04 -2H20; 0.01 g/1 MnS04 -H20; 4.9 g/1 KOH; 5.0 g/1 malic acid; 0.02 g/1 yeast extract (Difco); in a 10 mM phosphate buffer, final pH adjusted to 6.8. Salts other than organic carbon, inorganic nitrogen, or phosphate salts for 1 liter of medium were dissolved in 10 ml of distilled water and autoclaved separately. After cooling, the salts were added to 940 ml of sterile phosphate buffer (10 mM, pH 6.8). Iron salt was filter sterilized before being added to the minimal salts medium. Malic acid, fructose and KN03 were filter sterilized and added individually to the medium. The final volume of the liquid growth medium was made 1 liter.
Inocula of A. brasilense or A. lipoferum were harvested from log-phase cultures grown in nutrient broth (NB; Difco; comprising Typtone and Beef extract and having a low C:N ratio) by centrifugation at 3,000 x g for 10 minutes at 4°C. Pellets were washed three times with equal volumes of 0.01 M phosphate buffer (pH 6.8) and inoculated into the flocculation growth medium to an initial optical density at 660 nm of 0.3 to 0.4. Cultures were grown in 250 ml flask containing 100 ml of medium. The cultures were incubated at 34°C on a Gyrotory shaker (New Brunswick Scientific Company, Inc., Edison, New Jersey) at 200 rpm and harvested after overnight incubation. Alternatively, cultures were grown in large batches with 5-liter bottles containing 4 liters of media. The large batch cultures were incubated with vigorous air sparging at 34°C overnight. Flocculated Azospirillum cells were harvested by decanting the culture fluid from the flocculated cells. A 100 ml culture of flocculation
medium yielded approximately 20 ml of wet floe. To determine the stability of wet floe versus dry flocculent, a 20 ml harvest of wet floe was divided into two 10 ml batches. One batch was maintained as a wet floe, while the other batch was air-dried to a powder. Each batch contained approximately 1011 Azospirillum cells.
Survival of Azospirillum brasilense as wet floe or as dry floe was analyzed according to the following procedure. Wet floes were stored at 4°C, and aliquots were periodically removed for viability measurements. Dry floes were stored at room temperature, and aliquots were periodically removed for viability measurements. Viability of the wet or dry floes was determined by incubating approximately
0.1 ml of wet floe, or approximately 10 mg dry floe in 100 ml phosphate buffer for 27-28 hours at room temperature. 0.1 ml of the incubated floe was then plated for viable counts on semi-selective nutrient agar (NB containing 1.5% agar and 15 μg/ml streptomycin) and incubated at 42°C, according to standard methods. Viability was determined by measuring the number of colony-forming units (cfu) per 0.1 ml wet floe or per 10 mg dry floe.
Table 1 shows the survival of Azospirillum brasilense as a wet flocculent or dry flocculent for 60 days following harvesting.
TABLE 1
Survival of Flocculated AzosOirillum
Viability
Time Wet Flocculent Dried Flocculent (Days) (loα cfu/0.1 ml) (loα cfu/10 mα)
0 7.202 7.529 15 7.002 6.946 30 7.151 7.394
45 7.290 7.183 60 7.339 7.204
As can be seen from Table 1, no appreciable decrease in cell viability was observed for the entire 60 day period, regardless of whether the Azospirillum was stored at 4°C as a wet floe or at room temperature as a dry floe.
In an extended observation, survival of Azospirillum brasilense as a dry floe was measured up to 6 months from the time of harvesting. No appreciable loss of cell viability was observed in dry floes of Azospirillum over the 6 month period. Wet floes were observed for cell viability up to 90 days, at which time no appreciable loss of viability was observed.
EXAMPLE 2 Co-Flocculation of Enterobacter cloacae and Pseudomonas putida with Azospirillum brasilense
The following procedures were performed to demonstrate the enhanced entrapment and survival of beneficial rhizobacteria in flocculated Azospirillum. Co-flocs of Enterobacter or Pseudomonas and
Azospirillum were formed by inoculating rifampicin- resistant strains of Enterobacter or Pseudomonas in flocculation growth medium just prior to floe formation by Azospirillum (6 hours after Azospirillum inoculation) and incubated 12 additional hours under the conditions described in Example 1. As a control, a "mixed flocculent" was formed by mixing cells of Enterobacter and Pseudomonas with previously- flocculated A . brasilense (prepared according to the method set forth in Example 1) in phosphate buffer.
To determine the degree of entrapment of Enterobacter or Pseudomonas in mixed floes versus co- flocs, mixed floes or co-flocs (0.1 ml respectively) were mixed with 1 ml buffer and vortexed for 30 seconds at full speed. Mixed floes and co-flocs were washed an additional 2 times with 1 ml of buffer, followed by vortexing at 30 seconds at full speed. Following each wash, an aliquot of the each floe was incubated in buffer for 27-28 hours, as described in Example 1. Viable counts of Enterobacter and Pseudomonas in mixed- or co-flocs were then determined by plating on nutrient agar with rifampicin (100 μg/ml) and measuring colony-forming units, as described in Example 1. Table 2 shows the results of the above-described procedure.
TABLE 2 Effect of Co-flocculation vs. Mixed Flocculation on Release of Enterobacter cloacae and Pseudomonas putida from Azospirillum Floes
Viability (loα cfu/ml wet flocculent)
En t eroba cter Pseudomonas
Wash Mixed Floe Co-floc Mixed Floe Co- -floe
1 7.000 10.450 7.450 10 000
2 5.510 10.340 7.190 10 000
3 5.450 9.000 6.950 10 .000
As can be seen from Table 2, both Enterobacter and Pseudomonas were better retained in Azospirillum floes if they had been co-inoculated with growing Azospirillum just prior to flocculation (i.e., co-flocculated) , than if they had been mixed with Azospirillum floe subsequent to flocculation. This is likely due to the fact that biopolymer matrix
formation more securely entraps co-cultured Enterobacter and Pseudomonas when they are present during the actual formation of biopolymer, than when they are added to the polymer matrix later. The survival of Enterobacter and Pseudomonas in Azospirillum floes was also examined. Co-flocs of Azospirillum brasilense, Enterobacter cloacae or Pseudomonas putida were prepared as described above. Floes were harvested as described in Example 1, and stored as wet floe at 4°C for up to 4 months. Results are shown in Table 3.
TABLE 3 Survival of Eiiteroibacter cloacae and Pseudomonas putida in Flocculated Azospirillum log cfu/ml wet flocculent
Time (Months) En t eroba cter Pseudomonas 0 10.450 10.000
1 9 . 400 9 . 750
2 8 . 250 8 . 700 4 5 . 900 7 . 950
As shown in Table 3, both Enterobacter and
Pseudomonas showed good survival rates as co-flocs of Azospirillum, when stored at 4°C for 1, 2 or 4 months. Between 10° and 1010 viable colony-forming-units of both Enterobacter and Pseudomonas per ml wet floe were present after one month of storage at 4°C. After 4 months of storage, approximately 106 cfu/ml viable Enterobacter was present per ml wet floe, while approximately 108 colony-forming-units per ml wet floe of Pseudomonas was present. In comparison, viable counts of non-flocculated Pseudomonas or Enterbacter have been observed to fall to less than 104 cfu/ml within one month. These data indicate that flocculated Azospirillum provides a protective storage
medium for other beneficial rhizobacteria to be later inoculated onto seeds, plants or soil.
EXAMPLE 3 Comparison of Survival of Flocculated and Non-Flocculated Azospirillum on Three Varieties of Turf Grass
The survival of non-flocculated versus flocculated Azospirillum brasilense on turf grass seeds was compared. Initial inoculum of either non- flocculated or flocculated cells was applied in 1 ml buffer at a level of 10* cfu/g seed, and dried under air flow. At intervals between 0 and 60 days after treatment, a pre-determined amount of seed was tested for the presence of viable Azospirillum by washing the seeds in an aliquot of buffer and plating equivalent amounts of buffer on nutrient agar, as described in Example 1. Seeds of Kentucky bluegrass, perennial ryegrass and tall fescue grass were treated in this manner. Results are shown in Table 4.
TABLE 4 Viability of Flocculated vs . Non- flocculated .Azospirillum in Seed Coatings of Three Turf Grasses
Viability (log cfu/α seed)
Kentucky Perennial Tall Bluecrrass Ryecrrass Fescue
Time (Davs) Floe Non-floe Floe Non-floe Floe Non-floe
0 7.688 7.544 7.830 7.620 7.872 7.469 15 7.845 6.440 7.840 6.690 7.929 5.900 30 7.648 4.707 7.602 5.204 7.894 5.767 45 7.505 3.685 7.270 5.164 7.788 4.531 60 7.694 3.544 7.607 4.620 7.790 3.662
As shown in Table 4 , flocculated Azospirillum demonstrated superior' survivability on all three varieties of grass , as compared with non-
flocculated Azospirillum inoculant. The number of viable cells per gram of seed remained relatively constant for 60 days on all three varieties of turf grass, when flocculated cells were utilized as the inoculant. In contrast, a significant decline in viable cell number per gram seed was observed on all three turf grass varieties over the course of 60 days, when non-flocculated Azospirillum was used as the inoculant. These results demonstrate the superior survivability of flocculated Azospirillum as an inoculant for seed coating.
Survival of flocculated and non-flocculated Azospirillum brasilense on turfgrass seeds at room temperature was also observed by measuring the percent of seeds yielding Azospirillum over the course of 24 weeks. These results are shown in Table 5.
TABLE 5 Turfgrass Seeds Yielding Flocculated vs. Non-Flocculated Azospirillum Inoculant Applied as Seed Coating
% Seeds Yielding Azoεvirillum
Bluegrass Rvegrass Fescue
Time
(Weeks) Floe Non-floe Floe Non-floe Floe Non-floe
0 100 100 100 100 100 100
1 98 93 100 99 100 98
2 100 96 99 97 100 95
3 98 82 99 83 98 83
4 98 79 98 76 95 77
8 90 58 84 61 83 70
16 76 33 74 32 76 40
24 41 14 70 23 69 12
As can be seen from Table 5, Azospirillum inoculant applied as a floe could be isolated from 95- 100% of seeds from each turfgrass variety for the first four weeks after treatment. Thereafter,* the percent of seeds yielding Azospirillum fell off to a final percentage of 41% (Kentucky bluegrass) - 70%
(perennial ryegrass and tall fescue) after 24 weeks of storage at room temperature. In contrast, Azospirillum inoculant applied in a non-flocculated form began to show decline in survival rate after the first week or two. The percent of seeds yielding non- flocculated Azospirillum decreased steadily over the 24-week period, reaching a final percentage of 12% (tall fescue) - 23% (perennial ryegrass) . These results again show the superior survivability of flocculated Azospirillum inoculant.
Upon germination, seeds coated with flocculated Azospirillum developed roots that were colonized with the Azospirillum cells. Additionally, tall fescue seeds inoculated with a seed coating of flocculated Azospirillum demonstrated a superior growth rate, as compared with non-inoculated seeds.
EXAMPLE 4 Survival of Flocculated Azospirillum Inoculants in Soil and Other Germinating
Mixtures
Survival of flocculated Azospirillum in soil was demonstrated according to the following procedure.
Wet Azospirillum floe was mixed with soil at a rate of 0.5 or 1.0 ml of floe per gram. The inoculated soil was then dried and stored at room temperature for up to four months.
As shown in Table 6, the survival of flocculated Azospirillum in soil remained virtually unchanged during four months of storage at room temperature. Thus, flocculated Azospirillum provides a stable inoculant for soil.
TABLE 6 Survival of Flocculated Azospirillum in Soil Viability
(loα cfu/α soil) Time (Months) 0.5 ml Floe 1.0 ml Floe 0 7.475 8.232
1 7.869 8.247
2 7.481 8.369
3 7.416 8.303
4 7.519 8.387
The release from wet floe and growth of Azospirillum brasilense was also observed in a soil priming mixture at three different temperatures, over a period of five days. The soil priming mixture comprised approximately equal volumes of calcined clay (neutral) , water and tall fescue seed. The soil priming mixture was inoculated at an approximate density of 106 cfu/g of mixture. Results are shown in Table 7.
TABLE 7 Release from Wet Floe and Growth of Azosvirillum in a Soil Priming Mixture
Viability
(loα c :fu/α mixture)
Time
(Days) 4°C 20°C 30°C
0 6.010 5.948 6.009
2 6.222 7.073 7.963
3 5.395 6.827 8.026
4 5.426 7.165 8.223
5 5.365 7.184 8.185
As can be seen in Table 7, when the mixture was incubated at 4°C for five days, the Azospirillum remained at that number for the first two days, then
declined somewhat over the following three days. Upon incubation at 20°C, Azospirillum cells multiplied from 106 to 107 cfu/g soil priming mixture, and remained at that level. When incubated at 30°C, Azospirillum cells multiplied from 106 to about 108 cfu/g soil priming mixture in the first two days, and remained at that level for the subsequent three days. Thus, the cell release and growth of flocculated Azospirillum in a soil priming mixture can be regulated by storage and/or incubation at selected temperatures.
EXAMPLE 5 Preparation of Flocculated Rhizobium and of Rhizobium/ Azospirillum Co-flocs Flocculation of RhizoJbium legruminosarum Jbv
Phaseoli was accomplished according to the methods set forth in Example 1, with the following modifications. Initial inoculum .RhizoJbium leguminosarum Jbv Phaseoli (USDA National RhizoJbium Culture Collection Strain No. 2743, available from U.S. Department of Agriculture
Research Center, Beltsville, MD 20745) was grown in a submerged culture containing 4 g/L of Nutrient Broth (Difco), 5 g/L mannitol, 0.5 g/L Yeast Extract (Difco) and mineral salts. The culture was initiated with Rhizobium cells adjusted to an initial optical density of about 0.2. Cultures were grown in a temperature controlled water bath under continuous shaking (150 revolutions/min) . Log-phase cells were harvested by centrifugation and the pellet transferred to a flocculation medium as described in Example 1, but containing 8 mM succinic acid instead of fructose.
For production of co-flocs of Rhizobium and Azospirillum, an initial inoculum of Azospirillum brasilense strain Cd and Rhizobium leguminosarum bv Phaseoli were grown, as described above. Cultures were initiated with a 1:1 mixture containing both
Azospirillum and Rhizobium cells adjusted to an initial optical density of about 0.2. The cultures were harvested and transferred to succinic acid- containing flocculation medium as described above. Table 8 shows a typical growth curve from co-cultivation of Rhizobium and Azospirillum in Nutrient Broth/Yeast Extract culture medium.
TABLE 8 Rhizobium/ Azospirillum Growth Curve
Time (h) Optical Density (600 nm)
0 0 . . 200 2 0 , . 210
4 0 , . 490
6 0 , . 740
8 1 , . 210
10 1 . . 460 12 1 . . 530
14 1 . . 570
As can be seen from Table 8, co-cultivated Rhizobium and Azospirillum exhibited a typical growth curve, as demonstrated by the change in optical density at 600 nm for the overnight period. A similar growth curve was obtained when Rhizobium leguminosarum was cultivated singly.
To demonstrate the ability of Rhizobium (alone or together with Azospirillum) to flocculate extensively, log-phase Rhizobium or Rhizobium/ Azospirillum cultures grown in the NB/Yeast Extract medium described above were harvested, washed and inoculated into flocculation medium at an initial optical density of 1.000. Cultures were incubated in the flocculation medium for several hours, as described in Example 1 above. Aliquots were removed at intervals during the flocculation time period for measurement of optical density. Flocculation of Rhizobium or Rhizobium/ 'Azospirillum was observed as
decrease in optical density of the culture over the incubation time period.
Table 9 shows the flocculation of Rhizobium leguminosarum over a 1 -hour incubation time.
TABLE 9 Flocculation of Rhizobium Leguminosarum Jbv Phaseoli in Flocculation Medium Containing 8 mM Succinate
Time (h) Optical Density (600 nm)
0 1.000
2 0.940 4 0.900
6 0.489
8 0.320
10 0.300
12 0.296 14 0.210
Table 10 shows the flocculation of co- cultivatived Rhizobium and Azospirillum.
TABLE 10
Co-Flocculation of Rhizobium and Azospirillum in Flocculation Medium Containing 8 mM Succinate
Time (h) Optical Density (600 nm)
0 1.000
2 1.000
4 0.920
6 0.489 8 0.320
10 0.300
12 0.297
14 0.211
16 0.211
As can be seen from Tables 9 and 10, extensive flocculation of Rhizobium or
Rhizobium/Azospirillum cultures can be obtained by transferring the bacteria to the appropriate flocculation medium. Incubation of the cultures in the flocculation medium results in formation of large aggregates of Rhizobium or Rhizobium/Azospirillum flocculents, which settle to the bottom of the culture medium container, and can be easily separated from the culture medium, as described hereinabove for Azospirillum.
EXAMPLE 6 Nodulation Efficiency of Rhizobium Leguminosarum Jbv Phaseoli : Comparison of Flocculated Versus Non-Flocculated RhizoJbium and Effect of Adding Azospirillum
The effect of flocculation on the ability of Rhizobium leguminosarum to stimulate nodule formation was measured. Additionally, the effect of added Azospirillum (either in flocculated or non-flocculated form) was also measured. Rhizobium leguminosarum bv Phaseoli , either singularly or in conjunction with Azospirillum brasilense strain Cd, was grown through log phase culture in Nutrient Broth/Yeast Extract medium, as described in Example 5 above. For testing of non-flocculated bacteria, these cultures were harvested and used without further treatment. For testing of flocculated bacteria, log phase cultures were pelleted, washed and incubated in flocculation medium, as described in Example 5 above. Inocula comprising equivalent numbers of cells were utilized for each of four treatments. All inocula were applied as seed coating to Phaseolus vulgaris L. [Navy Bean] , prior to planting the seeds. Twenty days after planting, plants were uprooted and the number of nodules per plant was counted (8 pots per treatment,
one plant per pot) . Results of this study are shown in Table 11.
TABLE 11 Effect of Flocculated Versus Non-Flocculated Form and Addition of Azospirillum on the Nodulation Efficiency of Rhizobium lecruminosarum Jbv Phaseoli
All Bacteria All Bacteria
Non-Flocculated Flocculated
Rhizobium only 93.25 + 8.24 188.75 ± 2.75 Rhizobium and 170.00 + 39.31 216.25 + 3.30
Azospirillum
As can be seen from Table 11, the use of flocculated Rhizobium versus non-flocculated Rhizobium as a seed coating resulted in a doubling of the number of root nodules per plant twenty days after planting. This result confirms the superiority of flocculated Rhizobium as an inoculum for promoting root nodulation in legumes.
Notably, the addition of non-flocculated Azospirillum to non-flocculated Rhizobium also resulted in a dramatic increase in nodulation, which approached the nodulation frequency obtained from inoculation with flocculated Rhizobium. The highest nodulation efficiency was observed, however, when co- flocs of Rhizobium and Azospirillum were used to inoculate seeds. Using the co-floc inoculant, nodulation frequency was increased approximately 2.3- fold over that obtained by seed coating with non- flocculated Rhizobium only, approximately 1.27-fold more than that observed when non-flocculated Rhizobium and Azospirillum were used, and approximately 1.15- fold greater than when flocculated Rhizobium only was
used. These results indicate that, for maximum nodulation efficiency, an inoculent comprising co- flocs of RhizoJbium and Azospirillum gives superior results.
While certain preferred embodiments of the present invention have been illustrated and described, the present invention is not limited to these embodiments. For example, flocculated bacterial inoculants may also be applied in the area of environmental science and engineering. Co-flocs comprising, e.g., Azospirillum and environmentally active microorganisms (e.g., pollutant-degrading bacteria) may be introduced into contaminated soils or other subsurface environments to degrade specific contaminants. Flocculated Azospirillum comprising such bacteria can provide a protective environment, enabling the detoxifying bacteria to survive longer under field conditions. One example of an environmentally-useful bacterium having potential utility as a co-floc is Flavobacterium sp. , which is a gram- negative aerobic bacterium that degrades a variety of chlorinated phenols. See Stormo et al. , App. Env. Microbiol., 5J3: 727-30 (1992).