TW202346585A - Methods and compositions for treating epilepsy - Google Patents
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Abstract
Description
本揭露屬於癲癇領域。特定而言,本揭露涉及用於治療癲癇諸如顳葉癲癇之方法及組成物。This disclosure is in the field of epilepsy. In particular, the present disclosure relates to methods and compositions for treating epilepsy, such as temporal lobe epilepsy.
在全球範圍內,每年估計有 500 萬人經診斷為患有癲癇,這是一種以癲癇發作、或突然反復發作的感覺障礙、意識喪失、或與大腦異常電活動相關的抽搐為特徵的神經疾病。當患者經歷兩次或更多次無端癲癇發作時,作出典型之癲癇診斷。癲癇之原因包括遺傳異常、先前的腦部感染、產前損傷、發育障礙及其他神經問題,諸如中風或腦腫瘤,但是大約 50% 經診斷為患有癲癇的人沒有已知之疾病發展原因。Globally, an estimated 5 million people are diagnosed with epilepsy each year, a neurological disorder characterized by seizures, or sudden and recurring episodes of sensory impairment, loss of consciousness, or convulsions associated with abnormal electrical activity in the brain. A typical diagnosis of epilepsy is made when a patient experiences two or more unprovoked seizures. Causes of epilepsy include genetic abnormalities, previous brain infections, prenatal injuries, developmental disabilities and other neurological problems such as stroke or brain tumors, but approximately 50% of people diagnosed with epilepsy have no known reason for the development of the disease.
顳葉癲癇 (TLE) 為成人中最常見形式的部分性癲癇 (佔全部形式之癲癇的 30% 至 40%)。眾所周知,海馬迴在 TLE 之病理生理學中起關鍵作用。在 TLE 之人類患者及動物模型中,發生神經迴路的異常重新佈線。網路重組 (「反應性可塑性」) 的最好實例之一為復發苔狀纖維 (recurrent mossy fiber) (rMF) 的萌芽,它在海馬迴之齒狀顆粒細胞 (DGC) 上建立新型病理生理學麩胺酸能突觸 (Tauck 與 Nadler,1985;Represa 等人,1989a, 1989b;Sutula 等人,1989;Gabriel 等人,2004),該等突觸導致復發興奮環路。rMF 突觸透過異位紅藻氨酸受體 (KAR) 起作用 (Epsztein 等人,2005;Artinian 等人,2011,2015)。KAR 為由 GluK1-GluK5 次單元組裝而成的四聚麩胺酸受體。在異源表現系統中,GluK1、GluK2 及 GluK3 可形成同源受體,而 GluK4 及 GluK5 與 GluK1 至 GluK3 次單元一起形成異源受體。天然 KAR 廣泛分佈在腦中,在海馬迴中發現了高密度之受體 (Carta 等人,2016, EJN),海馬迴為 TLE 中涉及的關鍵結構。本發明人之前的研究已經確定,在缺乏 GluK2 KAR 次單元之小鼠中,包括發作間期棘波及發作期放電在內的癲癇活動顯著減少。此外,在使用含有 GluK2/GluK5 之 KAR 的藥理學小分子拮抗劑後,癲癇樣活動大大減少,該等藥理學小分子拮抗劑阻斷異位突觸 KAR (Peret 等人,2014)。此等資料支持以下假設:在 DGC 中之 rMF 處異位表現的 KAR 在 TLE 之慢性發作中起主要作用。因此,在 DGC 中表現並由 GluK2/GluK5 組成的異常 KAR 被認為是治療藥物抗性癲癇諸如 TLE 的有希望之標靶。Temporal lobe epilepsy (TLE) is the most common form of partial epilepsy in adults (30% to 40% of all forms of epilepsy). The hippocampus is known to play a key role in the pathophysiology of TLE. Abnormal rewiring of neural circuits occurs in human patients and animal models of TLE. One of the best examples of network reorganization ("reactive plasticity") is the sprouting of recurrent mossy fibers (rMF), which establishes novel pathophysiology in the dentate granule cells (DGCs) of the hippocampus. Glutamatergic synapses (Tauck and Nadler, 1985; Represa et al., 1989a, 1989b; Sutula et al., 1989; Gabriel et al., 2004), which lead to recurrent excitatory circuits. rMF synapses act through ectopic kainate receptors (KARs) (Epsztein et al., 2005; Artinian et al., 2011, 2015). KAR is a tetrameric glutamate receptor assembled from GluK1-GluK5 subunits. In heterologous expression systems, GluK1, GluK2, and GluK3 form homologous receptors, while GluK4 and GluK5 form heterologous receptors together with the GluK1 to GluK3 subunits. Natural KARs are widely distributed in the brain, with high densities of receptors found in the hippocampus (Carta et al., 2016, EJN), a key structure involved in TLE. Previous studies by the inventors have determined that epileptic activity, including interictal spikes and ictal discharges, is significantly reduced in mice lacking the GluK2 KAR subunit. Furthermore, epileptiform activity was greatly reduced following the use of pharmacological small molecule antagonists of GluK2/GluK5-containing KARs that block ectopic synaptic KARs (Peret et al., 2014). These data support the hypothesis that KAR manifesting ectopically at rMF in DGCs plays a major role in the chronic onset of TLE. Therefore, aberrant KARs expressed in DGCs and composed of GluK2/GluK5 are considered promising targets for the treatment of drug-resistant epilepsy such as TLE.
已經針對許多疾病標靶提出了 RNA 干擾 (RNAi) 策略。基於 RNAi 之療法的成功應用受到限制。RNAi 療法面臨多種挑戰,諸如需要重複給藥及調配物挑戰。然而,可用於治療難治性 TLE 的基於 RNAi 之基因療法受到限制。因此,亟需新治療方式來治療癲癇症,諸如 TLE (例如,難治性 TLE)。RNA interference (RNAi) strategies have been proposed against many disease targets. The successful application of RNAi-based therapies has been limited. RNAi therapies face several challenges, such as the need for repeated dosing and formulation challenges. However, the availability of RNAi-based gene therapies for the treatment of refractory TLE is limited. Therefore, new therapeutic modalities are urgently needed to treat epilepsy, such as TLE (eg, refractory TLE).
本揭露提供用於治療或預防有此需要之個體 (例如,人類) 的癲癇,諸如顳葉癲癇 (TLE) 之組成物及方法。所揭示之方法包括向經診斷為患有癲癇症或處於發展為癲癇症風險下之個體投予治療有效量之多核苷酸 (例如,抑制性多核苷酸),諸如反義寡核苷酸 (ASO)、shRNA、siRNA、微小 RNA 或 shmiRNA,該多核苷酸靶向由麩胺酸促離子型受體紅藻氨酸型次單元 2 ( Grik2) 基因編碼的 mRNA,或投予治療有效量之編碼該多核苷酸的核酸載體 (例如,慢病毒載體或腺相關病毒 (AAV) 載體,例如 AAV9 載體)。所揭示之多核苷酸表現出經改善之加載到 RNA 誘導型緘默化複合體 (RISC) 蛋白中,以增強 RNA 干擾媒介的 Grik2轉錄本之降解。本揭露之特徵亦在於醫藥組成物,其包含所揭露之抑制性核酸 (例如,RNA) 劑及編碼該抑制性核酸的核酸載體中之一者或多者。 The present disclosure provides compositions and methods for treating or preventing epilepsy, such as temporal lobe epilepsy (TLE), in an individual (eg, a human) in need thereof. The disclosed methods include administering to an individual diagnosed with epilepsy or at risk of developing epilepsy a therapeutically effective amount of a polynucleotide (e.g., inhibitory polynucleotide), such as an antisense oligonucleotide (ASO). ), shRNA, siRNA, microRNA or shmiRNA, which targets the mRNA encoded by the glutamate ionotropic receptor kainate subunit 2 ( Grik2 ) gene, or administers a therapeutically effective amount of the encoded Nucleic acid vectors of the polynucleotide (eg, lentiviral vectors or adeno-associated virus (AAV) vectors, eg, AAV9 vectors). The disclosed polynucleotides exhibit improved loading into RNA-induced silencing complex (RISC) proteins to enhance RNA interference-mediated degradation of Grik2 transcripts. The present disclosure also features pharmaceutical compositions comprising one or more of the disclosed inhibitory nucleic acid (eg, RNA) agents and a nucleic acid vector encoding the inhibitory nucleic acid.
本揭露部分地基於以下令人驚訝的發現:本文所述之抑制性多核苷酸表現出顯著更高的引導股與隨從股比率 (G/P 比率),這支持抑制性多核苷酸加工的直接、實質性增加以及後續的 Grik2mRNA 之表現水平及所得 GluK2 蛋白之表現水平兩者之降低方面的改善。微小 RNA (miRNA) 療法的一個挑戰為經轉染之多核苷酸的加工效率低。因此,G/P 比率之改善可能與成熟 miRNA 分子產量之增加相關,並且伴隨地與所投予之 miRNA 療法的期望治療效應之增加相關。 This disclosure is based in part on the surprising finding that inhibitory polynucleotides described herein exhibit significantly higher leader to follower ratios (G/P ratios), supporting direct processing of inhibitory polynucleotides. , a substantial increase and subsequent improvement in both the expression level of Grik2 mRNA and the resulting expression level of GluK2 protein. One challenge of microRNA (miRNA) therapy is the inefficiency of processing of transfected polynucleotides. Therefore, an improvement in the G/P ratio may be associated with an increase in the production of mature miRNA molecules and, concomitantly, with an increase in the desired therapeutic effect of the administered miRNA therapy.
在第一態樣中,本揭露之特徵在於一種或多種與 Grik2mRNA 特異性地雜交的經分離之抑制性多核苷酸,其包括莖環區域 (包括 5' 臂 (5p)、環區域、3' 臂 (3p)),其中該莖環區域包括引導股序列及隨從股序列,且該引導股序列及隨從股序列包括:(a) 在引導股之 5' 端的尿嘧啶 (U)-腺嘌呤 (A) 鹼基對或 U-鳥嘌呤 (G) 鹼基對,(b) 在隨從股之 5' 端的胞嘧啶 (C)-G 鹼基對,(c) 在引導股序列之 5' 端的 U,(d) 在該引導股序列與該隨從股序列之間的種子區域 (seed region ) 中之錯配 (mismatch);及/或 (e) 在該多核苷酸之莖區域及該環區域之接合處以替換 U-G 搖擺 (wobble) 的 C-G 鹼基對或 U-A 鹼基對。 In a first aspect, the present disclosure features one or more isolated inhibitory polynucleotides that specifically hybridize to Grik2 mRNA, including a stem-loop region (including the 5' arm (5p), the loop region, the 3 ' arm (3p)), wherein the stem-loop region includes a leader strand sequence and a follower strand sequence, and the leader strand sequence and follower strand sequence include: (a) Uracil (U)-adenine at the 5' end of the leader strand (A) base pair or U-guanine (G) base pair, (b) cytosine (C)-G base pair at the 5' end of the follower strand, (c) at the 5' end of the leader strand sequence U, (d) a mismatch in the seed region between the leader strand sequence and the follower strand sequence; and/or (e) in the stem region and the loop region of the polynucleotide The junction is replaced by a CG base pair or a UA base pair that replaces the UG wobble.
在一些實施例中,a) 及 c) 增加 (improve) 裝載至 RNA 誘導型緘默化複合體 (RISC) 蛋白中的引導股序列。在一些實施例中,b) 減少 (impair) 裝載至 RISC 蛋白中的隨從股序列。在一些實施例中,d) 在 RISC 裝載期間促進該隨從股序列自該引導股序列去偶合 (decoupling)。在一些實施例中,e) 增強該環區域藉由 Dicer 自該莖區域之截切 (cleavage)。在一些實施例中,引導股序列之種子區域包含引導股序列之核苷酸 2 至 7。In some embodiments, a) and c) improve a guide strand sequence loaded into an RNA-induced silencing complex (RISC) protein. In some embodiments, b) impair the loading of the follower strand sequence into the RISC protein. In some embodiments, d) facilitates decoupling of the follower strand sequence from the leader strand sequence during RISC loading. In some embodiments, e) enhancing the loop region by cleavage of the stem region by Dicer. In some embodiments, the seed region of the leader sequence includes nucleotides 2 to 7 of the leader sequence.
在一些實施例中,莖環區域為與 SEQ ID NO: 2 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列同一性的多核苷酸。在一些實施例中,該引導股序列具有 SEQ ID NO: 17 之核酸序列。在一些實施例中,SEQ ID NO: 17 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 17 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 32 之核酸序列。在一些實施例中,SEQ ID NO: 32 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 32 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 2 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) sequence identity. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 17. In some embodiments, the leader of SEQ ID NO: 17 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bolded nucleotides in SEQ ID NO: 17 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 32. In some embodiments, the slave strand of SEQ ID NO: 32 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bolded nucleotides in SEQ ID NO: 32 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 3 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列同一性的多核苷酸。在一些實施例中,該引導股序列具有 SEQ ID NO: 18 之核酸序列。在一些實施例中,SEQ ID NO: 18 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 18 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 33 之核酸序列。在一些實施例中,SEQ ID NO: 33 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 33 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 3 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) sequence identity. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 18. In some embodiments, the leader of SEQ ID NO: 18 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bolded nucleotides in SEQ ID NO: 18 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 33. In some embodiments, the slave strand of SEQ ID NO: 33 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bolded nucleotides in SEQ ID NO: 33 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 4 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列同一性的多核苷酸。在一些實施例中,該引導股序列具有 SEQ ID NO: 19 之核酸序列。在一些實施例中,SEQ ID NO: 19 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 19 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 34 之核酸序列。在一些實施例中,SEQ ID NO: 34 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 34 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 4 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) sequence identity. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 19. In some embodiments, the leader of SEQ ID NO: 19 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 19 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 34. In some embodiments, the slave strand of SEQ ID NO: 34 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bolded nucleotides in SEQ ID NO: 34 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 5 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列同一性的多核苷酸。在一些實施例中,該引導股序列具有 SEQ ID NO: 20 之核酸序列。在一些實施例中,SEQ ID NO: 20 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 20 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 35 之核酸序列。在一些實施例中,SEQ ID NO: 35 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 35 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 5 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) sequence identity. In some embodiments, the guide strand sequence has the nucleic acid sequence of SEQ ID NO: 20. In some embodiments, the leader of SEQ ID NO: 20 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bolded nucleotides in SEQ ID NO: 20 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 35. In some embodiments, the slave strand of SEQ ID NO: 35 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 35 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 6 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列同一性的多核苷酸。在一些實施例中,該引導股序列具有 SEQ ID NO: 21 之核酸序列。在一些實施例中,SEQ ID NO: 21 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 21 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 36 之核酸序列。在一些實施例中,SEQ ID NO: 36 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 36 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 6 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) sequence identity. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 21. In some embodiments, the leader of SEQ ID NO: 21 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bolded nucleotides in SEQ ID NO: 21 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 36. In some embodiments, the slave strand of SEQ ID NO: 36 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bolded nucleotides in SEQ ID NO: 36 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 7 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列同一性的多核苷酸。在一些實施例中,該引導股序列具有 SEQ ID NO: 22 之核酸序列。在一些實施例中,SEQ ID NO: 22 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 22 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 37 之核酸序列。在一些實施例中,SEQ ID NO: 37 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 37 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 7 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) sequence identity. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 22. In some embodiments, the leader of SEQ ID NO: 22 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 22 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 37. In some embodiments, the slave strand of SEQ ID NO: 37 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bolded nucleotides in SEQ ID NO: 37 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 8 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列同一性的多核苷酸。在一些實施例中,該引導股序列具有 SEQ ID NO: 23 之核酸序列。在一些實施例中,SEQ ID NO: 23 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 23 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 38 之核酸序列。在一些實施例中,SEQ ID NO: 38 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 38 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 8 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) sequence identity. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 23. In some embodiments, the leader of SEQ ID NO: 23 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 23 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 38. In some embodiments, the slave strand of SEQ ID NO: 38 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 38 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 9 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列同一性的多核苷酸。在一些實施例中,該引導股序列具有 SEQ ID NO: 24 之核酸序列。在一些實施例中,SEQ ID NO: 23 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 23 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 39 之核酸序列。在一些實施例中,SEQ ID NO: 39 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 39 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 9 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) sequence identity. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 24. In some embodiments, the leader of SEQ ID NO: 23 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 23 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 39. In some embodiments, the slave strand of SEQ ID NO: 39 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bolded nucleotides in SEQ ID NO: 39 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 10 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列同一性的多核苷酸。在一些實施例中,該引導股序列具有 SEQ ID NO: 25 之核酸序列。在一些實施例中,SEQ ID NO: 25 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 25 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 40 之核酸序列。在一些實施例中,SEQ ID NO: 40 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 40 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 10 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) sequence identity. In some embodiments, the guide strand sequence has the nucleic acid sequence of SEQ ID NO: 25. In some embodiments, the leader of SEQ ID NO: 25 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bolded nucleotides in SEQ ID NO: 25 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 40. In some embodiments, the slave strand of SEQ ID NO: 40 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 40 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 11 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列11 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 26 之核酸序列。在一些實施例中,SEQ ID NO: 4 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 26 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 41 之核酸序列。在一些實施例中,SEQ ID NO: 41 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 41 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 11 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) the nucleic acid sequence of sequence 11. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 26. In some embodiments, the leader of SEQ ID NO: 4 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bolded nucleotides in SEQ ID NO: 26 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 41. In some embodiments, the slave strand of SEQ ID NO: 41 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bolded nucleotides in SEQ ID NO: 41 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 12 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列12 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 27 之核酸序列。在一些實施例中,SEQ ID NO: 27 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 27 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 42 之核酸序列。在一些實施例中,SEQ ID NO: 42 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 42 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 12 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) the nucleic acid sequence of sequence 12. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 27. In some embodiments, the leader of SEQ ID NO: 27 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bolded nucleotides in SEQ ID NO: 27 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 42. In some embodiments, the slave strand of SEQ ID NO: 42 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bolded nucleotides in SEQ ID NO: 42 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 13 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列13 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 28 之核酸序列。在一些實施例中,SEQ ID NO: 28 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 28 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 43 之核酸序列。在一些實施例中,SEQ ID NO: 43 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 43 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 13 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) the nucleic acid sequence of sequence 13. In some embodiments, the guide strand sequence has the nucleic acid sequence of SEQ ID NO: 28. In some embodiments, the leader of SEQ ID NO: 28 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 28 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 43. In some embodiments, the slave strand of SEQ ID NO: 43 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 43 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 14 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列14 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 29 之核酸序列。在一些實施例中,SEQ ID NO: 29 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 29 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 44 之核酸序列。在一些實施例中,SEQ ID NO: 44 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 44 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 14 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) the nucleic acid sequence of sequence 14. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 29. In some embodiments, the leader of SEQ ID NO: 29 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 29 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 44. In some embodiments, the slave strand of SEQ ID NO: 44 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bolded nucleotides in SEQ ID NO: 44 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 15 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列15 同一性的多核苷酸。在一些實施例中,該引導股序列具有 SEQ ID NO: 30 之核酸序列。在一些實施例中,SEQ ID NO: 30 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 30 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 45 之核酸序列。在一些實施例中,SEQ ID NO: 45 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 45 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 15 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) sequence 15 identity of a polynucleotide. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 30. In some embodiments, the leader of SEQ ID NO: 30 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 30 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 45. In some embodiments, the slave strand of SEQ ID NO: 45 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 45 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 226 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列226 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 230 之核酸序列。在一些實施例中,SEQ ID NO: 230 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 230 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 234 之核酸序列。在一些實施例中,SEQ ID NO: 234 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 234 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 226 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 226. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 230. In some embodiments, the leader of SEQ ID NO: 230 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 230 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 234. In some embodiments, the slave strand of SEQ ID NO: 234 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 234 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 227 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列227 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 231 之核酸序列。在一些實施例中,SEQ ID NO: 231 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 231 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 235 之核酸序列。在一些實施例中,SEQ ID NO: 235 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 235 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 227 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 227. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 231. In some embodiments, the leader of SEQ ID NO: 231 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bolded nucleotides in SEQ ID NO: 231 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 235. In some embodiments, the slave strand of SEQ ID NO: 235 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 235 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 228 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列228 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 232 之核酸序列。在一些實施例中,SEQ ID NO: 232 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 232 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 236 之核酸序列。在一些實施例中,SEQ ID NO: 236 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 236 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 228 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 228. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 232. In some embodiments, the leader of SEQ ID NO: 232 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 232 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 236. In some embodiments, the slave strand of SEQ ID NO: 236 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 236 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 229 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列229 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 233 之核酸序列。在一些實施例中,SEQ ID NO: 233 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 233 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 237 之核酸序列。在一些實施例中,SEQ ID NO: 237 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 237 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 229 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 229. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 233. In some embodiments, the leader of SEQ ID NO: 233 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 233 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 237. In some embodiments, the slave strand of SEQ ID NO: 237 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bolded nucleotides in SEQ ID NO: 237 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 238 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列238 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 242 之核酸序列。在一些實施例中,SEQ ID NO: 242 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 242 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 246 之核酸序列。在一些實施例中,SEQ ID NO: 246 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 246 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 238 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 238. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 242. In some embodiments, the leader of SEQ ID NO: 242 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 242 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 246. In some embodiments, the slave strand of SEQ ID NO: 246 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bolded nucleotides in SEQ ID NO: 246 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 239 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列239 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 243 之核酸序列。在一些實施例中,SEQ ID NO: 243 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 243 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 247 之核酸序列。在一些實施例中,SEQ ID NO: 247 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 247 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 239 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 239. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 243. In some embodiments, the leader of SEQ ID NO: 243 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 243 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 247. In some embodiments, the companion strand of SEQ ID NO: 247 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 247 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 240 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列240 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 244 之核酸序列。在一些實施例中,SEQ ID NO: 244 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 244 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 248 之核酸序列。在一些實施例中,SEQ ID NO: 248 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 248 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 240 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 240. In some embodiments, the guide strand sequence has the nucleic acid sequence of SEQ ID NO: 244. In some embodiments, the leader of SEQ ID NO: 244 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 244 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 248. In some embodiments, the companion strand of SEQ ID NO: 248 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 248 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 241 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列241 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 245 之核酸序列。在一些實施例中,SEQ ID NO: 245 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 245 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 249 之核酸序列。在一些實施例中,SEQ ID NO: 249 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 3 中所示之 SEQ ID NO: 249 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 241 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 241. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 245. In some embodiments, the leader of SEQ ID NO: 245 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 245 shown in Table 3. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 249. In some embodiments, the slave strand of SEQ ID NO: 249 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 249 shown in Table 3.
在一些實施例中,莖環區域為與 SEQ ID NO: 47 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列47 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 64 之核酸序列。在一些實施例中,SEQ ID NO: 64 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 64 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 81 之核酸序列。在一些實施例中,SEQ ID NO: 81 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 81 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 47 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) the nucleic acid sequence of sequence 47. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 64. In some embodiments, the leader of SEQ ID NO: 64 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bolded nucleotides in SEQ ID NO: 64 shown in Table 5. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 81. In some embodiments, the companion strand of SEQ ID NO: 81 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bolded nucleotides in SEQ ID NO: 81 shown in Table 5.
在一些實施例中,莖環區域為與 SEQ ID NO: 48 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列48 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 65 之核酸序列。在一些實施例中,SEQ ID NO: 65 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 65 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 82 之核酸序列。在一些實施例中,SEQ ID NO: 82 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 82 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 48 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) the nucleic acid sequence of sequence 48. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 65. In some embodiments, the leader of SEQ ID NO: 65 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 65 shown in Table 5. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 82. In some embodiments, the slave strand of SEQ ID NO: 82 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 82 shown in Table 5.
在一些實施例中,莖環區域為與 SEQ ID NO: 49 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列49 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 66 之核酸序列。在一些實施例中,SEQ ID NO: 66 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 66 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 83 之核酸序列。在一些實施例中,SEQ ID NO: 83 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 83 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 49 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 49. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 66. In some embodiments, the leader of SEQ ID NO: 66 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 66 shown in Table 5. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 83. In some embodiments, the slave strand of SEQ ID NO: 83 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 83 shown in Table 5.
在一些實施例中,莖環區域為與 SEQ ID NO: 50 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列50 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 67 之核酸序列。在一些實施例中,SEQ ID NO: 67 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 67 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 84 之核酸序列。在一些實施例中,SEQ ID NO: 84 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 84 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 50 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 50. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 67. In some embodiments, the leader of SEQ ID NO: 67 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 67 shown in Table 5. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 84. In some embodiments, the slave strand of SEQ ID NO: 84 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bolded nucleotides in SEQ ID NO: 84 shown in Table 5.
在一些實施例中,莖環區域為與 SEQ ID NO: 51 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列51 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 68 之核酸序列。在一些實施例中,SEQ ID NO: 68 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 68 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 85 之核酸序列。在一些實施例中,SEQ ID NO: 85 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 85 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 51 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) the nucleic acid sequence of sequence 51. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 68. In some embodiments, the leader of SEQ ID NO: 68 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 68 shown in Table 5. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 85. In some embodiments, the slave strand of SEQ ID NO: 85 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 85 shown in Table 5.
在一些實施例中,莖環區域為與 SEQ ID NO: 52 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列52 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 69 之核酸序列。在一些實施例中,SEQ ID NO: 69 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 69 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 86 之核酸序列。在一些實施例中,SEQ ID NO: 86 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 86 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 52 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 52. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 69. In some embodiments, the leader of SEQ ID NO: 69 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 69 shown in Table 5. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 86. In some embodiments, the slave strand of SEQ ID NO: 86 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bolded nucleotides in SEQ ID NO: 86 shown in Table 5.
在一些實施例中,莖環區域為與 SEQ ID NO: 53 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列53 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 70 之核酸序列。在一些實施例中,SEQ ID NO: 70 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 70 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 87 之核酸序列。在一些實施例中,SEQ ID NO: 87 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 87 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 53 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 53. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 70. In some embodiments, the leader of SEQ ID NO: 70 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 70 shown in Table 5. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 87. In some embodiments, the slave strand of SEQ ID NO: 87 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bolded nucleotides in SEQ ID NO: 87 shown in Table 5.
在一些實施例中,莖環區域為與 SEQ ID NO: 54 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列54 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 71 之核酸序列。在一些實施例中,SEQ ID NO: 71 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 71 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 88 之核酸序列。在一些實施例中,SEQ ID NO: 88 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 88 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 54 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 54. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 71. In some embodiments, the leader of SEQ ID NO: 71 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 71 shown in Table 5. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 88. In some embodiments, the slave strand of SEQ ID NO: 88 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 88 shown in Table 5.
在一些實施例中,莖環區域為與 SEQ ID NO: 55 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列55 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 72 之核酸序列。在一些實施例中,SEQ ID NO: 72 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 72 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 89 之核酸序列。在一些實施例中,SEQ ID NO: 89 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 89 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 55 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 55. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 72. In some embodiments, the leader of SEQ ID NO: 72 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 72 shown in Table 5. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 89. In some embodiments, the slave strand of SEQ ID NO: 89 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 89 shown in Table 5.
在一些實施例中,莖環區域為與 SEQ ID NO: 56 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列56 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 73 之核酸序列。在一些實施例中,SEQ ID NO: 73 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 73 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 90 之核酸序列。在一些實施例中,SEQ ID NO: 90 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 90 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 56 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 56. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 73. In some embodiments, the leader of SEQ ID NO: 73 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 73 shown in Table 5. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 90. In some embodiments, the slave strand of SEQ ID NO: 90 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 90 shown in Table 5.
在一些實施例中,莖環區域為與 SEQ ID NO: 57 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列57 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 74 之核酸序列。在一些實施例中,SEQ ID NO: 74 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 74 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 91 之核酸序列。在一些實施例中,SEQ ID NO: 91 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 91 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 57 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 57. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 74. In some embodiments, the leader of SEQ ID NO: 74 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 74 shown in Table 5. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 91. In some embodiments, the companion strand of SEQ ID NO: 91 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 91 shown in Table 5.
在一些實施例中,莖環區域為與 SEQ ID NO: 58 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列58 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 75 之核酸序列。在一些實施例中,SEQ ID NO: 75 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 75 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 92 之核酸序列。在一些實施例中,SEQ ID NO: 92 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 92 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 58 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 58. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 75. In some embodiments, the leader of SEQ ID NO: 75 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 75 shown in Table 5. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 92. In some embodiments, the slave strand of SEQ ID NO: 92 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bolded nucleotides in SEQ ID NO: 92 shown in Table 5.
在一些實施例中,莖環區域為與 SEQ ID NO: 59 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列59 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 76。在一些實施例中,SEQ ID NO: 76 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 76 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 93 之核酸序列。在一些實施例中,SEQ ID NO: 93 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 93 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 59 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 59. In some embodiments, the leader sequence has SEQ ID NO: 76. In some embodiments, the leader of SEQ ID NO: 76 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 76 shown in Table 5. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 93. In some embodiments, the slave strand of SEQ ID NO: 93 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 93 shown in Table 5.
在一些實施例中,莖環區域為與 SEQ ID NO: 60 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列60 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 77 之核酸序列。在一些實施例中,SEQ ID NO: 77 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 77 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 94 之核酸序列。在一些實施例中,SEQ ID NO: 94 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 94 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 60 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 60. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 77. In some embodiments, the leader of SEQ ID NO: 77 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 77 shown in Table 5. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 94. In some embodiments, the slave strand of SEQ ID NO: 94 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 94 shown in Table 5.
在一些實施例中,莖環區域為與 SEQ ID NO: 61 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列61 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 78 之核酸序列。在一些實施例中,SEQ ID NO: 78 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 78 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 95 之核酸序列。在一些實施例中,SEQ ID NO: 95 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 95 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 61 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) the nucleic acid sequence of sequence 61. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 78. In some embodiments, the leader of SEQ ID NO: 78 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 78 shown in Table 5. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 95. In some embodiments, a follower of SEQ ID NO: 95 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 95 shown in Table 5.
在一些實施例中,莖環區域為與 SEQ ID NO: 62 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列62 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 79 之核酸序列。在一些實施例中,SEQ ID NO: 79 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 79 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 96 之核酸序列。在一些實施例中,SEQ ID NO: 96 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 5 中所示之 SEQ ID NO: 96 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 62 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) the nucleic acid sequence of sequence 62. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 79. In some embodiments, the leader of SEQ ID NO: 79 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 79 shown in Table 5. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 96. In some embodiments, the slave strand of SEQ ID NO: 96 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 96 shown in Table 5.
在一些實施例中,莖環區域為與 SEQ ID NO: 98 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列98 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 110 之核酸序列。在一些實施例中,SEQ ID NO: 110 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 110 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 122 之核酸序列。在一些實施例中,SEQ ID NO: 122 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 122 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 98 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 98. In some embodiments, the guide strand sequence has the nucleic acid sequence of SEQ ID NO: 110. In some embodiments, the leader of SEQ ID NO: 110 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 110 shown in Table 7. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 122. In some embodiments, the slave strand of SEQ ID NO: 122 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 122 shown in Table 7.
在一些實施例中,莖環區域為與 SEQ ID NO: 99 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列99 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 111 之核酸序列。在一些實施例中,SEQ ID NO: 111 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 111 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 123 之核酸序列。在一些實施例中,SEQ ID NO: 123 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 123 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 99 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 99. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 111. In some embodiments, the leader of SEQ ID NO: 111 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 111 shown in Table 7. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 123. In some embodiments, the slave strand of SEQ ID NO: 123 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 123 shown in Table 7.
在一些實施例中,莖環區域為與 SEQ ID NO: 100 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列100 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 112 之核酸序列。在一些實施例中,SEQ ID NO: 112 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 112 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 124 之核酸序列。在一些實施例中,SEQ ID NO: 124 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 124 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 100 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) the nucleic acid sequence of sequence 100. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 112. In some embodiments, the companion strand of SEQ ID NO: 112 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 112 shown in Table 7. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 124. In some embodiments, the slave strand of SEQ ID NO: 124 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 124 shown in Table 7.
在一些實施例中,莖環區域為與 SEQ ID NO: 101 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列101 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 113 之核酸序列。在一些實施例中,SEQ ID NO: 113 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 113 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 125 之核酸序列。在一些實施例中,SEQ ID NO: 125 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 125 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 101 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) the nucleic acid sequence of sequence 101. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 113. In some embodiments, the slave strand of SEQ ID NO: 113 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 113 shown in Table 7. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 125. In some embodiments, the companion strand of SEQ ID NO: 125 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 125 shown in Table 7.
在一些實施例中,莖環區域為與 SEQ ID NO: 102 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列102 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 114 之核酸序列。在一些實施例中,SEQ ID NO: 114 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 114 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 126 之核酸序列。在一些實施例中,SEQ ID NO: 126 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 126 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 102 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 102. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 114. In some embodiments, the companion strand of SEQ ID NO: 114 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 114 shown in Table 7. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 126. In some embodiments, the slave strand of SEQ ID NO: 126 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 126 shown in Table 7.
在一些實施例中,莖環區域為與 SEQ ID NO: 103 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列103同一性的多核苷酸。在一些實施例中,該引導股序列具有 SEQ ID NO: 115 之核酸序列。在一些實施例中,SEQ ID NO: 115 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 115 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 127 之核酸序列。在一些實施例中,SEQ ID NO: 127 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 127 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 103 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) sequence 103 identity of a polynucleotide. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 115. In some embodiments, the companion strand of SEQ ID NO: 115 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 115 shown in Table 7. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 127. In some embodiments, the companion strand of SEQ ID NO: 127 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 127 shown in Table 7.
在一些實施例中,莖環區域為與 SEQ ID NO: 104 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列104同一性的多核苷酸。在一些實施例中,該引導股序列具有 SEQ ID NO: 116 之核酸序列。在一些實施例中,SEQ ID NO: 116 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 116 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 128 之核酸序列。在一些實施例中,SEQ ID NO: 128 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 128 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 104 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) sequence 104 identity of a polynucleotide. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 116. In some embodiments, the slave strand of SEQ ID NO: 116 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 116 shown in Table 7. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 128. In some embodiments, the companion strand of SEQ ID NO: 128 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 128 shown in Table 7.
在一些實施例中,莖環區域為與 SEQ ID NO: 105 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列105 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 117 之核酸序列。在一些實施例中,SEQ ID NO: 117 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 117 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 129 之核酸序列。在一些實施例中,SEQ ID NO: 129 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 129 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 105 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 105. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 117. In some embodiments, the companion strand of SEQ ID NO: 117 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 117 shown in Table 7. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 129. In some embodiments, the slave strand of SEQ ID NO: 129 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 129 shown in Table 7.
在一些實施例中,莖環區域為與 SEQ ID NO: 106 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列106 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 118 之核酸序列。在一些實施例中,SEQ ID NO: 118 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 118 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 130 之核酸序列。在一些實施例中,SEQ ID NO: 130 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 130 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 106 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 106. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 118. In some embodiments, the companion strand of SEQ ID NO: 118 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 118 shown in Table 7. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 130. In some embodiments, the slave strand of SEQ ID NO: 130 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 130 shown in Table 7.
在一些實施例中,莖環區域為與 SEQ ID NO: 107 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列107 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 119 之核酸序列。在一些實施例中,SEQ ID NO: 119 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 119 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 131 之核酸序列。在一些實施例中,SEQ ID NO: 131 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 131 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 107 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 107. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 119. In some embodiments, the companion strand of SEQ ID NO: 119 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 119 shown in Table 7. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 131. In some embodiments, the companion strand of SEQ ID NO: 131 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 131 shown in Table 7.
在一些實施例中,莖環區域為與 SEQ ID NO: 108 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列108 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 120 之核酸序列。在一些實施例中,SEQ ID NO: 120 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 120 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 132 之核酸序列。在一些實施例中,SEQ ID NO: 132 之隨從股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 7 中所示之 SEQ ID NO: 132 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 108 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 108. In some embodiments, the guide strand sequence has the nucleic acid sequence of SEQ ID NO: 120. In some embodiments, the slave strand of SEQ ID NO: 120 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 120 shown in Table 7. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 132. In some embodiments, the companion strand of SEQ ID NO: 132 contains 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 132 shown in Table 7.
在一些實施例中,莖環區域為與 SEQ ID NO: 134 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列134 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 140 之核酸序列。在一些實施例中,SEQ ID NO: 140 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 9 中所示之 SEQ ID NO: 140 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 146 之核酸序列。在一些實施例中,SEQ ID NO: 146 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 9 中所示之 SEQ ID NO: 146 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 134 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 134. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 140. In some embodiments, the leader of SEQ ID NO: 140 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 140 shown in Table 9. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 146. In some embodiments, the leader of SEQ ID NO: 146 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 146 shown in Table 9.
在一些實施例中,莖環區域為與 SEQ ID NO: 135 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列135 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 141 之核酸序列。在一些實施例中,SEQ ID NO: 141 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 9 中所示之 SEQ ID NO: 141 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 147 之核酸序列。在一些實施例中,SEQ ID NO: 147 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 9 中所示之 SEQ ID NO: 147 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 135 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 135. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 141. In some embodiments, the leader of SEQ ID NO: 141 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 141 shown in Table 9. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 147. In some embodiments, the leader of SEQ ID NO: 147 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 147 shown in Table 9.
在一些實施例中,莖環區域為與 SEQ ID NO: 136 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列136 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 142 之核酸序列。在一些實施例中,SEQ ID NO: 142 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 9 中所示之 SEQ ID NO: 142 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 148 之核酸序列。在一些實施例中,SEQ ID NO: 148 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 9 中所示之 SEQ ID NO: 148 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 136 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 136. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 142. In some embodiments, the leader of SEQ ID NO: 142 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 142 shown in Table 9. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 148. In some embodiments, the leader of SEQ ID NO: 148 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 148 shown in Table 9.
在一些實施例中,莖環區域為與 SEQ ID NO: 137 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列137 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 143 之核酸序列。在一些實施例中,SEQ ID NO: 143 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 9 中所示之 SEQ ID NO: 143 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 149 之核酸序列。在一些實施例中,SEQ ID NO: 149 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 9 中所示之 SEQ ID NO: 149 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 137 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 137. In some embodiments, the guide sequence has the nucleic acid sequence of SEQ ID NO: 143. In some embodiments, the leader of SEQ ID NO: 143 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 143 shown in Table 9. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 149. In some embodiments, the leader of SEQ ID NO: 149 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), wherein the change does not involve any of the bold nucleotides in SEQ ID NO: 149 shown in Table 9.
在一些實施例中,莖環區域為與 SEQ ID NO: 138 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或 100%) 序列138 之核酸序列。在一些實施例中,該引導股序列具有 SEQ ID NO: 144 之核酸序列。在一些實施例中,SEQ ID NO: 144 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 9 中所示之 SEQ ID NO: 144 中之加粗核苷酸中之任一者。在一些實施例中,該隨從股序列具有 SEQ ID NO: 150 之核酸序列。在一些實施例中,SEQ ID NO: 150 之引導股包含 1 至 7 個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸改變 (例如,取代、缺失、插入或錯配),其中改變不涉及表 9 中所示之 SEQ ID NO: 150 中之加粗核苷酸中之任一者。In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 138 , 94%, 95%, 96%, 97%, 98%, 99% or 100%) of the nucleic acid sequence of sequence 138. In some embodiments, the guide strand sequence has the nucleic acid sequence of SEQ ID NO: 144. In some embodiments, the leader of SEQ ID NO: 144 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 144 shown in Table 9. In some embodiments, the companion strand sequence has the nucleic acid sequence of SEQ ID NO: 150. In some embodiments, the leader of SEQ ID NO: 150 includes 1 to 7 (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleotide changes (e.g., substitutions, deletions, insertions, or mismatch), where the change does not involve any of the bold nucleotides in SEQ ID NO: 150 shown in Table 9.
在一些實施例中,該抑制性多核苷酸包含反義寡核苷酸 (ASO)。在一些實施例中,該抑制性多核苷酸包含短干擾 RNA (siRNA)、短髮夾 RNA (shRNA)、微小 RNA (miRNA)、或經短髮夾適用之 miRNA (shmiRNA)。In some embodiments, the inhibitory polynucleotide comprises an antisense oligonucleotide (ASO). In some embodiments, the inhibitory polynucleotide comprises short interfering RNA (siRNA), short hairpin RNA (shRNA), microRNA (miRNA), or short hairpin-mediated miRNA (shmiRNA).
在一些實施例中,該多核苷酸為介於 19 至 21 個核苷酸之間。在一些實施例中,該多核苷酸為 19 個核苷酸。在一些實施例中,該多核苷酸為 20 個核苷酸。在一些實施例中,該多核苷酸為 21 個核苷酸。In some embodiments, the polynucleotide is between 19 and 21 nucleotides. In some embodiments, the polynucleotide is 19 nucleotides. In some embodiments, the polynucleotide is 20 nucleotides. In some embodiments, the polynucleotide is 21 nucleotides.
在一些實施例中,該 Grik2mRNA 由核酸序列編碼,該核酸序列與以下中之任一者具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%、或更多 (例如、100%)) 序列同一性:SEQ ID NO: 164、SEQ ID NO: 165、SEQ ID NO: 166、SEQ ID NO: 167、SEQ ID NO: 168、SEQ ID NO: 169、SEQ ID NO: 170、SEQ ID NO: 171、SEQ ID NO: 172、SEQ ID NO: 173 或 SEQ ID NO: 174。在一些實施例中,該 Grik2mRNA 由以下之核酸序列編碼:SEQ ID NO: 164、SEQ ID NO: 165、SEQ ID NO: 166、SEQ ID NO: 167、SEQ ID NO: 168、SEQ ID NO: 169、SEQ ID NO: 170、SEQ ID NO: 171、SEQ ID NO: 172、SEQ ID NO: 173 或 SEQ ID NO: 174。 In some embodiments, the Grik2 mRNA is encoded by a nucleic acid sequence that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) Sequence identity: SEQ ID NO: 164, SEQ ID NO: 165, SEQ ID NO: 166, SEQ ID NO: 167, SEQ ID NO: 168, SEQ ID NO: 169, SEQ ID NO: 170, SEQ ID NO: 171, SEQ ID NO: 172, SEQ ID NO: 173 or SEQ ID NO: 174. In some embodiments, the Grik2 mRNA is encoded by the following nucleic acid sequences: SEQ ID NO: 164, SEQ ID NO: 165, SEQ ID NO: 166, SEQ ID NO: 167, SEQ ID NO: 168, SEQ ID NO: 169. SEQ ID NO: 170, SEQ ID NO: 171, SEQ ID NO: 172, SEQ ID NO: 173 or SEQ ID NO: 174.
在一些實施例中,該抑制性多核苷酸能夠降低細胞中 GluK2 蛋白之水平 (如本揭露中進一步討論)。在一些實施例中,該多核苷酸將細胞中 GluK2 蛋白之水平降低至少 10%、至少至少 15%、至少 20%、至少 25%、至少 30%、至少 35%、至少 40%、至少 45%、至少 50%、至少 55%、至少 60%、至少 65%、至少 70% 或至少 75%。在一些實施例中,細胞為神經元,諸如海馬神經元 (例如,齒狀顆粒細胞 (DGC) 或麩胺酸能錐狀神經元 (glutamatergic pyramidal neuron))。在其他實施例中,包括彼等其中細胞為神經元者,細胞為人類細胞。In some embodiments, the inhibitory polynucleotide is capable of reducing the levels of GluK2 protein in the cell (as discussed further in this disclosure). In some embodiments, the polynucleotide reduces the level of GluK2 protein in the cell by at least 10%, at least at least 15%, at least 20%, at least 25%, at least 30%, at least 35%, at least 40%, at least 45% , at least 50%, at least 55%, at least 60%, at least 65%, at least 70% or at least 75%. In some embodiments, the cells are neurons, such as hippocampal neurons (e.g., dentate granule cells (DGCs) or glutamatergic pyramidal neurons). In other embodiments, including those wherein the cell is a neuron, the cell is a human cell.
在另一態樣中,本揭露之特徵在於一種包含前述態樣及實施例中之任一者之多核苷酸的載體。在一些實施例中,該載體為複制缺陷型的。在一些實施例中,該載體為哺乳動物、昆蟲、細菌或病毒載體。在一些實施例中,該載體為表現載體。在一些實施例中,該病毒載體係選自由以下所組成之群組:腺相關病毒 (AAV)、反轉錄病毒、腺病毒、細小病毒、冠狀病毒、負股 RNA 病毒、正黏液病毒、棒狀病毒、副黏液病毒、正股 RNA 病毒、小核糖核酸病毒、α 病毒、雙股 DNA 病毒、疱疹病毒、艾司坦-巴爾 (Epstein-Barr) 病毒、巨大細胞病毒、禽痘病毒及金絲雀痘病毒。在一些實施例中,該載體為 AAV 載體。在一些實施例中,該 AAV 載體為 AAV5、AAV9 或 AAVrh10 載體。In another aspect, the present disclosure features a vector comprising a polynucleotide of any of the preceding aspects and embodiments. In some embodiments, the vector is replication defective. In some embodiments, the vector is a mammalian, insect, bacterial, or viral vector. In some embodiments, the vector is an expression vector. In some embodiments, the viral vector system is selected from the group consisting of: adeno-associated virus (AAV), retrovirus, adenovirus, parvovirus, coronavirus, negative-strand RNA virus, orthomyxovirus, rod-shaped virus Viruses, paramyxoviruses, orthostranded RNA viruses, picornaviruses, alphaviruses, double-stranded DNA viruses, herpesviruses, Epstein-Barr virus, cytomegalovirus, fowlpox virus, and canaries Poxvirus. In some embodiments, the vector is an AAV vector. In some embodiments, the AAV vector is an AAV5, AAV9 or AAVrh10 vector.
在另一態樣中,本揭露之特徵在於一種包含多核苷酸的表現卡匣,該表現卡匣編碼或包含對應於本揭露第一態樣之莖環序列的多核苷酸,諸如與以下中之任一者之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的莖環區域:SEQ ID NO: 1 至 SEQ ID NO: 15、SEQ ID NO: 226 至 SEQ ID NO: 229 及 SEQ ID NO: 238 至 SEQ ID NO: 241。在一些實施例中,該莖環區域與 SEQ ID NO: 4 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,該莖環區域具有 SEQ ID NO: 4 之核酸序列。在一些實施例中,該表現卡匣包含多核苷酸,該多核苷酸與 SEQ ID NO: 135 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,該表現卡匣包含多核苷酸,該多核苷酸與 SEQ ID NO: 258 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,該表現卡匣包含多核苷酸,該多核苷酸與 SEQ ID NO: 259 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,該表現卡匣包含多核苷酸,該多核苷酸與 SEQ ID NO: 260 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,該表現卡匣包含多核苷酸,該多核苷酸與 SEQ ID NO: 261 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,該表現卡匣包含多核苷酸,該多核苷酸與 SEQ ID NO: 256 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,該表現卡匣包含多核苷酸,該多核苷酸與 SEQ ID NO: 257 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性。In another aspect, the disclosure features a representation cassette comprising a polynucleotide encoding or comprising a polynucleotide corresponding to a stem-loop sequence of the first aspect of the disclosure, such as as described below Any of the nucleic acid sequences has at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97% , 98%, 99% or more (e.g., 100%)) stem-loop regions of sequence identity: SEQ ID NO: 1 to SEQ ID NO: 15, SEQ ID NO: 226 to SEQ ID NO: 229, and SEQ ID NO: 238 to SEQ ID NO: 241. In some embodiments, the stem-loop region is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 4 , 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the stem-loop region has the nucleic acid sequence of SEQ ID NO: 4. In some embodiments, the performance cassette comprises a polynucleotide that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%) identical to the nucleic acid sequence of SEQ ID NO: 135 , 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the performance cassette comprises a polynucleotide that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%) identical to the nucleic acid sequence of SEQ ID NO: 258 , 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the performance cassette comprises a polynucleotide that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%) identical to the nucleic acid sequence of SEQ ID NO: 259 , 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the performance cassette comprises a polynucleotide that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%) identical to the nucleic acid sequence of SEQ ID NO: 260 , 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the performance cassette comprises a polynucleotide that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%) identical to the nucleic acid sequence of SEQ ID NO: 261 , 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the performance cassette comprises a polynucleotide that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%) identical to the nucleic acid sequence of SEQ ID NO: 256 , 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the performance cassette comprises a polynucleotide that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%) identical to the nucleic acid sequence of SEQ ID NO: 257 , 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity.
在另一態樣中,本揭露提供一種包含多核苷酸的表現卡匣,該多核苷酸與以下中之任一者之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 46-62。In another aspect, the present disclosure provides a representation cassette comprising a polynucleotide that shares at least 85% (e.g., at least 86%, 87%, 88%) a nucleic acid sequence with any of the following , 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO :46-62.
在另一態樣中,本揭露提供一種包含多核苷酸的表現卡匣,該多核苷酸與以下中之任一者之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 97-108。In another aspect, the present disclosure provides a representation cassette comprising a polynucleotide that shares at least 85% (e.g., at least 86%, 87%, 88%) a nucleic acid sequence with any of the following , 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO :97-108.
在另一態樣中,本揭露提供一種包含多核苷酸的表現卡匣,該多核苷酸與以下中之任一者之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 133-138。在一些實施例中,該莖環序列與 SEQ ID NO: 135 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,該莖環序列具有 SEQ ID NO: 135 之核酸序列。In another aspect, the present disclosure provides a representation cassette comprising a polynucleotide that shares at least 85% (e.g., at least 86%, 87%, 88%) a nucleic acid sequence with any of the following , 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO : 133-138. In some embodiments, the stem-loop sequence is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) identical to the nucleic acid sequence of SEQ ID NO: 135 , 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the stem-loop sequence has the nucleic acid sequence of SEQ ID NO: 135.
在一些實施例中,該表現卡匣包含 5' 側翼區域、環區域及 3' 側翼區域。在一些實施例中,該 5' 側翼區域包含多核苷酸,該多核苷酸與以下中任一者之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 217、SEQ ID NO: 220 或 SEQ ID NO: 223。在一些實施例中,該 3' 側翼區域包含多核苷酸,該多核苷酸與以下中任一者之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 218、SEQ ID NO: 221 或 SEQ ID NO: 224。在一些實施例中,該 5' 側翼區域包含 5' 間隔子序列及 5' 側翼序列。在一些實施例中,該 3' 側翼區域包含 3' 間隔子序列及 3' 側翼序列。在一些實施例中,該環區域包含微小 RNA 環序列,其為 E-miR-30、miR-218-1 或 E-miR-124-3 序列。在一些實施例中,該微小 RNA 環序列包含多核苷酸,該多核苷酸與以下中任一者之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 219、SEQ ID NO: 222 或 SEQ ID NO: 225。在一些實施例中,該微小 RNA 環序列包含多核苷酸,該多核苷酸與 SEQ ID NO: 222 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,該微小 RNA 環序列包含多核苷酸,該多核苷酸具有 SEQ ID NO: 222 之核酸序列。In some embodiments, the performance cassette includes a 5' flanking region, a ring region, and a 3' flanking region. In some embodiments, the 5' flanking region comprises a polynucleotide that shares at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%) the nucleic acid sequence of any of the following %, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 217, SEQ ID NO: 220 or SEQ ID NO: 223. In some embodiments, the 3' flanking region comprises a polynucleotide that shares at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%) the nucleic acid sequence of any of the following %, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 218, SEQ ID NO: 221 or SEQ ID NO: 224. In some embodiments, the 5' flanking region includes a 5' spacer sequence and a 5' flanking sequence. In some embodiments, the 3' flanking region includes a 3' spacer sequence and a 3' flanking sequence. In some embodiments, the loop region includes a microRNA loop sequence, which is an E-miR-30, miR-218-1, or E-miR-124-3 sequence. In some embodiments, the microRNA loop sequence comprises a polynucleotide that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90% identical to any of the following nucleic acid sequences) %, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 219, SEQ ID NO: 222 or SEQ ID NO: 225. In some embodiments, the microRNA loop sequence comprises a polynucleotide that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%) identical to the nucleic acid sequence of SEQ ID NO: 222. %, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the microRNA loop sequence comprises a polynucleotide having the nucleic acid sequence of SEQ ID NO: 222.
在一些實施例中,該表現卡匣包含突觸蛋白 (hSyn) 啟動子或鈣/攜鈣蛋白依賴性蛋白激酶 II (CaMKII) 啟動子。在一些實施例中,該表現卡匣包含組成型啟動子,該組成型啟動子含有巨細胞病毒增強子 (例如,CAG 或 CBA)、U6、H1 或 7SK 啟動子。In some embodiments, the expression cassette comprises a synaptophysin (hSyn) promoter or a calcium/calcin-dependent protein kinase II (CaMKII) promoter. In some embodiments, the expression cassette comprises a constitutive promoter containing a cytomegalovirus enhancer (e.g., CAG or CBA), U6, H1, or 7SK promoter.
在另一態樣中,本揭露提供一種表現卡匣,其包含,從 5' 到 3':(a) 第一啟動子序列;(b) 包含莖環序列的多核苷酸,該莖環序列與以下中之任一者之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 1 至 SEQ ID NO: 15、SEQ ID NO: 46 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 138、SEQ ID NO: 226 至 SEQ ID NO: 229 或 SEQ ID NO: 238 至 SEQ ID NO: 241;(c) 視情況,第二啟動子序列;及 (d) 包含莖環序列的多核苷酸,該莖環序列與以下中之任一者之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: SEQ ID NO: 1 至 SEQ ID NO: 15、SEQ ID NO: 46 至 SEQ ID NO: 62、SEQ ID NO: 97 至 108、SEQ ID NO: 133 至 SEQ ID NO: 138、SEQ ID NO: 226 至 SEQ ID NO: 229、或 SEQ ID NO: 238 至 SEQ ID NO: 241。在一些實施例中,該表現卡匣包含,從 5' 到 3',(a) 第一啟動子序列;(b) 包含莖環序列的多核苷酸,該莖環序列與 SEQ ID NO: 4 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性;(c) 視情況,第二啟動子序列;及 (d) 包含莖環序列的多核苷酸,該莖環序列與 SEQ ID NO: 135 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,該表現卡匣包含,從 5' 到 3',(a) 第一啟動子序列;(b) 包含莖環序列的多核苷酸,該莖環序列具有 SEQ ID NO: 4 之核酸序列;(c) 視情況,第二啟動子序列;及 (d) 包含莖環序列的多核苷酸,該多核苷酸具有 SEQ ID NO: 135 之核酸序列。在一些實施例中,該表現卡匣包含序列,該序列與 SEQ ID NO: 258 具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性。In another aspect, the present disclosure provides a performance cassette comprising, from 5' to 3': (a) a first promoter sequence; (b) a polynucleotide comprising a stem-loop sequence, the stem-loop sequence A nucleic acid sequence that is at least 85% identical to any of the following (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96% , 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 1 to SEQ ID NO: 15, SEQ ID NO: 46 to SEQ ID NO: 62, SEQ ID NO : 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 138, SEQ ID NO: 226 to SEQ ID NO: 229 or SEQ ID NO: 238 to SEQ ID NO: 241; (c) as appropriate , a second promoter sequence; and (d) a polynucleotide comprising a stem-loop sequence that is at least 85% (e.g., at least 86%, 87%, 88%) identical to the nucleic acid sequence of any of the following , 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO : SEQ ID NO: 1 to SEQ ID NO: 15, SEQ ID NO: 46 to SEQ ID NO: 62, SEQ ID NO: 97 to 108, SEQ ID NO: 133 to SEQ ID NO: 138, SEQ ID NO: 226 to SEQ ID NO: 229, or SEQ ID NO: 238 to SEQ ID NO: 241. In some embodiments, the performance cassette comprises, from 5' to 3', (a) a first promoter sequence; (b) a polynucleotide comprising a stem-loop sequence identical to SEQ ID NO: 4 The nucleic acid sequence has at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; (c) optionally, a second promoter sequence; and (d) a polynucleotide comprising a stem-loop sequence identical to SEQ ID NO: 135 nucleic acid sequences have at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% , 99% or more (e.g., 100%)) sequence identity. In some embodiments, the performance cassette comprises, from 5' to 3', (a) a first promoter sequence; (b) a polynucleotide comprising a stem-loop sequence having SEQ ID NO: 4 the nucleic acid sequence; (c) optionally, the second promoter sequence; and (d) a polynucleotide comprising a stem-loop sequence, the polynucleotide having the nucleic acid sequence of SEQ ID NO: 135. In some embodiments, the performance cassette includes a sequence that is at least 85% identical to SEQ ID NO: 258 (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity.
在一些實施例中,該多核苷酸 (其包含莖環序列,該莖環序列具有 SEQ ID NO: 1 至 SEQ ID NO: 15、SEQ ID NO: 46 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 138、SEQ ID NO: 226 至 229 或 SEQ ID NO: 238 至 SEQ ID NO: 241 中之任一者之核酸序列或其變體,該變體與該核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性) 包含隨從序列,該隨從序列與引導序列互補或基本上互補,其中該隨從序列位於相對於引導序列的 5' 或 3'。在一些實施例中,該多核苷酸 (其包含莖環序列,該莖環序列具有 SEQ ID NO: 1 至 SEQ ID NO: 15、SEQ ID NO: 46 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 138、SEQ ID NO: 226 至 229 或 SEQ ID NO: 238 至 SEQ ID NO: 241 中之任一者之核酸序列或其變體,該變體與該核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性) 包含 5' 側翼區域,該 5' 側翼區域位於相對於引導序列的 5' 。在一些實施例中,該多核苷酸 (其包含莖環序列,該莖環序列具有 SEQ ID NO: 1 至 SEQ ID NO: 15、SEQ ID NO: 46 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 138、SEQ ID NO: 226 至 229 或 SEQ ID NO: 238 至 SEQ ID NO: 241 中之任一者之核酸序列或其變體,該變體與該核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性) 包含 3' 側翼區域,該 3' 側翼區域位於相對於該引導序列的 3'。在一些實施例中,該多核苷酸 (其包含莖環序列,該莖環序列具有 SEQ ID NO: 1 至 SEQ ID NO: 15、SEQ ID NO: 46 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 138、SEQ ID NO: 226 至 229 或 SEQ ID NO: 238 至 SEQ ID NO: 241 中之任一者之核酸序列或其變體,該變體與該核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性) 包含環區域,該環區域位於引導序列與隨從序列之間,其中該環區域包含微小 RNA 環序列。In some embodiments, the polynucleotide comprising a stem-loop sequence having SEQ ID NO: 1 to SEQ ID NO: 15, SEQ ID NO: 46 to SEQ ID NO: 62, SEQ ID NO: 97 to the nucleic acid sequence of any one of SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 138, SEQ ID NO: 226 to 229, or SEQ ID NO: 238 to SEQ ID NO: 241, or a variant thereof variant, the variant is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%) sequence identity) contains a follower sequence that is complementary or substantially complementary to the leader sequence, wherein the follower sequence is located 5' relative to the leader sequence or 3'. In some embodiments, the polynucleotide comprising a stem-loop sequence having SEQ ID NO: 1 to SEQ ID NO: 15, SEQ ID NO: 46 to SEQ ID NO: 62, SEQ ID NO: 97 to the nucleic acid sequence of any one of SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 138, SEQ ID NO: 226 to 229, or SEQ ID NO: 238 to SEQ ID NO: 241, or a variant thereof variant, the variant is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%) sequence identity) contains a 5' flanking region located 5' relative to the leader sequence. In some embodiments, the polynucleotide comprising a stem-loop sequence having SEQ ID NO: 1 to SEQ ID NO: 15, SEQ ID NO: 46 to SEQ ID NO: 62, SEQ ID NO: 97 to the nucleic acid sequence of any one of SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 138, SEQ ID NO: 226 to 229, or SEQ ID NO: 238 to SEQ ID NO: 241, or a variant thereof variant, the variant is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%) sequence identity) contains a 3' flanking region located 3' relative to the leader sequence. In some embodiments, the polynucleotide comprising a stem-loop sequence having SEQ ID NO: 1 to SEQ ID NO: 15, SEQ ID NO: 46 to SEQ ID NO: 62, SEQ ID NO: 97 to the nucleic acid sequence of any one of SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 138, SEQ ID NO: 226 to 229, or SEQ ID NO: 238 to SEQ ID NO: 241, or a variant thereof variant, the variant is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%) sequence identity) contains a loop region between the leader sequence and the follower sequence, where the loop region contains the microRNA loop sequence.
在一些實施例中,第一啟動子及/或視情況選用的第二啟動子係選自由 hSyn 啟動子或 CaMKII 啟動子所組成之群組。該第一及/或第二啟動子亦可選自包含巨細胞病毒增強子 (例如,CAG 或 CBA)、U6、H1 及 7SK 啟動子的組成型啟動子。In some embodiments, the first promoter and/or optionally the second promoter is selected from the group consisting of an hSyn promoter or a CaMKII promoter. The first and/or second promoter may also be selected from constitutive promoters including the cytomegalovirus enhancer (e.g., CAG or CBA), U6, H1 and 7SK promoters.
在一些實施例中,該 5' 側翼區域包含多核苷酸,該多核苷酸與以下中任一者之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 217、SEQ ID NO: 220 或 SEQ ID NO: 223。在一些實施例中,該 3' 側翼區域包含多核苷酸,該多核苷酸與以下中任一者之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 218、SEQ ID NO: 221 或 SEQ ID NO: 224。在一些實施例中,該微小 RNA 環序列為 E-miR-30、miR-218-1 或 E-miR-124-3 序列。在一些實施例中,該微小 RNA 環序列包含多核苷酸,該多核苷酸與以下中任一者之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 219、SEQ ID NO: 222 或 SEQ ID NO: 225。在一些實施例中,該微小 RNA 環序列包含多核苷酸,該多核苷酸與 SEQ ID NO: 222 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,該微小 RNA 環序列包含多核苷酸,該多核苷酸具有 SEQ ID NO: 222 之核酸序列。In some embodiments, the 5' flanking region comprises a polynucleotide that shares at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%) the nucleic acid sequence of any of the following %, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 217, SEQ ID NO: 220 or SEQ ID NO: 223. In some embodiments, the 3' flanking region comprises a polynucleotide that shares at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%) the nucleic acid sequence of any of the following %, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 218, SEQ ID NO: 221 or SEQ ID NO: 224. In some embodiments, the microRNA loop sequence is an E-miR-30, miR-218-1 or E-miR-124-3 sequence. In some embodiments, the microRNA loop sequence comprises a polynucleotide that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90% identical to any of the following nucleic acid sequences) %, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 219, SEQ ID NO: 222 or SEQ ID NO: 225. In some embodiments, the microRNA loop sequence comprises a polynucleotide that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%) identical to the nucleic acid sequence of SEQ ID NO: 222. %, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the microRNA loop sequence comprises a polynucleotide having the nucleic acid sequence of SEQ ID NO: 222.
在一些實施例中,該表現卡匣包含在該表現卡匣之 5' 端上的 5'-反向末端重複 (ITR) 序列及在該表現卡匣之 3' 端上的 3'-ITR 序列。在一些實施例中,該 5'-ITR 及 3' ITR 序列為 AAV2 5'-ITR 及 3' ITR 序列。在一些實施例中,該 5'-ITR 序列包含多核苷酸,該多核苷酸與以下之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 208 或 SEQ ID NO: 209。在一些實施例中,該 5'-ITR 序列包含多核苷酸,該多核苷酸具有以下之核酸序列:SEQ ID NO: 208 或 SEQ ID NO: 209。在一些實施例中,該 5'-ITR 序列包含多核苷酸,該多核苷酸具有以下之核酸序列:SEQ ID NO: 208。在一些實施例中,該 3'-ITR 序列包含多核苷酸,該多核苷酸與以下核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 210、SEQ ID NO: 211 或 SEQ ID NO: 212。在一些實施例中,該 3'-ITR 序列包含多核苷酸,該多核苷酸具有以下之核酸序列:SEQ ID NO: 210、SEQ ID NO: 211 或 SEQ ID NO: 212。在一些實施例中,該 3'-ITR 序列包含多核苷酸,該多核苷酸具有以下之核酸序列:SEQ ID NO: 212。In some embodiments, the expression cassette includes a 5'-inverted terminal repeat (ITR) sequence on the 5' end of the expression cassette and a 3'-ITR sequence on the 3' end of the expression cassette . In some embodiments, the 5'-ITR and 3' ITR sequences are AAV2 5'-ITR and 3' ITR sequences. In some embodiments, the 5'-ITR sequence comprises a polynucleotide that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%) identical to the following nucleic acid sequence %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 208 or SEQ ID NO: 209 . In some embodiments, the 5'-ITR sequence comprises a polynucleotide having the following nucleic acid sequence: SEQ ID NO: 208 or SEQ ID NO: 209. In some embodiments, the 5'-ITR sequence comprises a polynucleotide having the following nucleic acid sequence: SEQ ID NO: 208. In some embodiments, the 3'-ITR sequence comprises a polynucleotide that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%) identical to the following nucleic acid sequence , 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 210, SEQ ID NO: 211 or SEQ ID NO: 212. In some embodiments, the 3'-ITR sequence comprises a polynucleotide having the following nucleic acid sequence: SEQ ID NO: 210, SEQ ID NO: 211, or SEQ ID NO: 212. In some embodiments, the 3'-ITR sequence comprises a polynucleotide having the following nucleic acid sequence: SEQ ID NO: 212.
在一些實施例中,該表現卡匣進一步包括增強子序列。在一實施例中,該增強子序列可位於本文所揭露之表現卡匣或載體中以增強表現卡匣或載體中啟動子的活性 (例如,增強子序列可以位於本文所述表現卡匣或載體中啟動子序列的 5')。在一些實施例中,該增強子序列包括多核苷酸,該多核苷酸與 SEQ ID NO: 207 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,該增強子序列包括多核苷酸,該多核苷酸具有 SEQ ID NO: 207 之核酸序列In some embodiments, the performance cassette further includes an enhancer sequence. In one embodiment, the enhancer sequence can be located in the expression cassette or vector disclosed herein to enhance the activity of the promoter in the expression cassette or vector (e.g., the enhancer sequence can be located in the expression cassette or vector described herein). 5') of the promoter sequence. In some embodiments, the enhancer sequence includes a polynucleotide that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%) identical to the nucleic acid sequence of SEQ ID NO: 207 , 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the enhancer sequence includes a polynucleotide having the nucleic acid sequence of SEQ ID NO: 207
在一些實施例中,該表現卡匣進一步包括內含子序列。在一實施例中,該內含子序列可位於表現卡匣或載體中以改善抑制性多核苷酸的表現 (例如,ASO (例如,miRNA 序列;例如,內含子可置於啟動子與抑制性多核苷酸之核酸序列之間)。在一些實施例中,該內含子序列位於本文所述的兩個或更多個抑制性多核苷酸序列 (例如,兩個或更多個 miRNA 序列) 之間。在一些實施例中,該內含子序列包含多核苷酸,該多核苷酸與以下之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 205 或 SEQ ID NO: 206。在一些實施例中,該內含子序列包含多核苷酸,該多核苷酸具有以下之核酸序列:SEQ ID NO: 205 或 SEQ ID NO: 206。In some embodiments, the performance cassette further includes an intron sequence. In one embodiment, the intron sequence can be located in a performance cassette or vector to improve the performance of an inhibitory polynucleotide (e.g., ASO (e.g., a miRNA sequence); e.g., the intron can be placed between a promoter and an inhibitory polynucleotide). between nucleic acid sequences of inhibitory polynucleotides). In some embodiments, the intron sequence is located between two or more inhibitory polynucleotide sequences described herein (e.g., two or more miRNA sequences ). In some embodiments, the intron sequence includes a polynucleotide that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%) identical to the following nucleic acid sequence: %, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 205 or SEQ ID NO: 206. In some embodiments, the intron sequence comprises a polynucleotide having the following nucleic acid sequence: SEQ ID NO: 205 or SEQ ID NO: 206.
在一些實施例中,該表現卡匣進一步包括一個或多個 (例如,兩個、三個、四個或五個) 多腺苷酸化訊息序列 (例如,以改善本文所揭示之表現卡匣或載體之抑制性多核苷酸的核輸出、轉譯及穩定性)。該多腺苷酸化訊息序列可位於末端抑制劑多核苷酸序列 (例如,本文所揭露之 ASO 序列,諸如 miRNA 序列) 的 3' 及/或 3' ITR 序列的 5'。在一些實施例中,該多腺苷酸化訊息序列為兔 β-球蛋白 (RBG) 多腺苷酸化訊號。在一些實施例中,該 RBG 多腺苷酸化訊號包含多核苷酸,該多核苷酸與以下之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 213、SEQ ID NO: 214 或 SEQ ID NO: 215。在一些實施例中,該 RBG 多腺苷酸化訊號包含多核苷酸,該多核苷酸具有以下之核酸序列:SEQ ID NO: 213、SEQ ID NO: 214 或 SEQ ID NO: 215。在一些實施例中,該多腺苷酸化訊息序列為牛生長激素 (BGH) 多腺苷酸化訊息序列。在一些實施例中,該 BGH 多腺苷酸化訊息序列包含多核苷酸,該多核苷酸與 SEQ ID NO: 216 之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,該 BGH 多腺苷酸化訊息序列包含多核苷酸,該多核苷酸具有 SEQ ID NO: 216 之核酸序列。In some embodiments, the performance cartridge further includes one or more (eg, two, three, four, or five) polyadenylation message sequences (eg, to improve the performance cartridges disclosed herein or Nuclear export, translation and stability of inhibitory polynucleotides of vectors). The polyadenylation message sequence can be located 3' and/or 5' of the 3' ITR sequence of the terminal inhibitor polynucleotide sequence (e.g., the ASO sequence disclosed herein, such as a miRNA sequence). In some embodiments, the polyadenylation signal sequence is a rabbit beta-globin (RBG) polyadenylation signal. In some embodiments, the RBG polyadenylation signal comprises a polynucleotide that has at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 213, SEQ ID NO: 214 or SEQ ID NO: 215. In some embodiments, the RBG polyadenylation signal includes a polynucleotide having the following nucleic acid sequence: SEQ ID NO: 213, SEQ ID NO: 214, or SEQ ID NO: 215. In some embodiments, the polyadenylation message is a bovine growth hormone (BGH) polyadenylation message. In some embodiments, the BGH polyadenylation message sequence comprises a polynucleotide that is at least 85% (e.g., at least 86%, 87%, 88%, 89%) identical to the nucleic acid sequence of SEQ ID NO: 216 %, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the BGH polyadenylation message sequence includes a polynucleotide having the nucleic acid sequence of SEQ ID NO: 216.
在一些實施例中,該表現卡匣進一步包含一個或多個 (例如,兩個、三個、四個或五個) 填充序列。在一些實施例中,該一個或多個 (例如,兩個、三個、四個或五個) 填充序列位於表現卡匣之 3' 端 (例如,在多腺苷酸化序列與 3' ITR 序列之間)。在一些實施例中,該一個或多個 (例如,兩個、三個、四個或五個) 填充序列與 SEQ ID NO: 250 之核酸序列具有至少 85% (例如,至少 86%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,該一個或多個 (例如,兩個、三個、四個或五個) 填充序列與 SEQ ID NO: 250 之核酸序列具有至少 90% (例如,至少 91%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,該一個或多個 (例如,兩個、三個、四個或五個) 填充序列與 SEQ ID NO: 250 之核酸序列具有至少 95% (例如,至少 96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,該一個或多個 (例如,兩個、三個、四個或五個) 填充序列與 SEQ ID NO: 250 之核酸序列具有至少 99% 序列同一性。在一些實施例中,該一個或多個 (例如,兩個、三個、四個或五個) 填充序列具有 SEQ ID NO: 250 之核酸序列。在一些實施例中,該一個或多個 (例如,兩個、三個、四個或五個) 填充序列與 SEQ ID NO: 251 之核酸序列具有至少 85% (例如,至少 86%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,該一個或多個 (例如,兩個、三個、四個或五個) 填充序列與 SEQ ID NO: 251 之核酸序列具有至少 90% (例如,至少 91%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,該一個或多個 (例如,兩個、三個、四個或五個) 填充序列與 SEQ ID NO: 251 之核酸序列具有至少 95% (例如,至少 96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,該一個或多個 (例如,兩個、三個、四個或五個) 填充序列與 SEQ ID NO: 251 之核酸序列具有至少 99% 序列同一性。在一些實施例中,該一個或多個 (例如,兩個、三個、四個或五個) 填充序列具有 SEQ ID NO: 251 之核酸序列。In some embodiments, the performance cartridge further contains one or more (eg, two, three, four, or five) filler sequences. In some embodiments, the one or more (e.g., two, three, four, or five) stuffer sequences are located at the 3' end of the expression cassette (e.g., between the polyadenylation sequence and the 3' ITR sequence between). In some embodiments, the one or more (e.g., two, three, four, or five) filler sequences are at least 85% (e.g., at least 86%, 90%) identical to the nucleic acid sequence of SEQ ID NO: 250 , 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the one or more (e.g., two, three, four, or five) stuffer sequences are at least 90% (e.g., at least 91%, 95%) identical to the nucleic acid sequence of SEQ ID NO: 250 , 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the one or more (e.g., two, three, four, or five) filler sequences are at least 95% (e.g., at least 96%, 97%) identical to the nucleic acid sequence of SEQ ID NO: 250 , 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the one or more (e.g., two, three, four, or five) filler sequences have at least 99% sequence identity with the nucleic acid sequence of SEQ ID NO: 250. In some embodiments, the one or more (e.g., two, three, four, or five) stuffer sequences have the nucleic acid sequence of SEQ ID NO: 250. In some embodiments, the one or more (e.g., two, three, four, or five) filler sequences are at least 85% (e.g., at least 86%, 90%) identical to the nucleic acid sequence of SEQ ID NO: 251 , 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the one or more (e.g., two, three, four or five) filler sequences are at least 90% (e.g., at least 91%, 95%) identical to the nucleic acid sequence of SEQ ID NO: 251 , 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the one or more (e.g., two, three, four, or five) filler sequences are at least 95% (e.g., at least 96%, 97%) identical to the nucleic acid sequence of SEQ ID NO: 251 , 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the one or more (e.g., two, three, four, or five) filler sequences have at least 99% sequence identity with the nucleic acid sequence of SEQ ID NO: 251. In some embodiments, the one or more (e.g., two, three, four, or five) stuffer sequences have the nucleic acid sequence of SEQ ID NO: 251.
在一些實施例中,任何態樣及實施例中之任一者之表現卡匣包括,從 5' 到 3':(a) 5' ITR 序列;(b) 視情況,增強子序列;(c) 第一啟動子序列;(d) 視情況,內含子序列;(e) 包含莖環序列的多核苷酸;(f) 視情況,第二啟動子序列;(g) 視情況,包含莖環序列的多核苷酸;(h) 多腺苷酸化訊息序列,諸如 RBG 多腺苷酸化訊息序列;(i) 一個或多個填充序列;及 (j) 3' ITR。In some embodiments, a performance cassette of any aspect and embodiment includes, from 5' to 3': (a) a 5' ITR sequence; (b) optionally, an enhancer sequence; (c) ) first promoter sequence; (d) optionally, the intron sequence; (e) polynucleotide containing the stem-loop sequence; (f) optionally, the second promoter sequence; (g) optionally, the polynucleotide containing the stem a polynucleotide of a loop sequence; (h) a polyadenylation message sequence, such as an RBG polyadenylation message sequence; (i) one or more stuffer sequences; and (j) 3' ITR.
在一些實施例中,前述態樣及實施例之表現卡匣與以下中任一者之序列具有至少 70% (例如,至少 75%、80%、85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 252-261。在一些實施例中,前述態樣及實施例之表現卡匣與以下中任一者之序列具有至少 70% (例如,至少 75%、80%、85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: SEQ ID NO: 256 及 SEQ ID NO: 258 至 SEQ ID NO: 261。在一些實施例中,前述態樣及實施例之表現卡匣與以下之序列具有至少 70% (例如,至少 75%、80%、85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 261。在一些實施例中,該表現卡匣具有 SEQ ID NO: 256 之核酸序列。In some embodiments, the performance cartridge of the foregoing aspects and embodiments has at least 70% (e.g., at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 252-261. In some embodiments, the performance cartridge of the foregoing aspects and embodiments has at least 70% (e.g., at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: SEQ ID NO: 256 and SEQ ID NO: 258 to SEQ ID NO: 261. In some embodiments, the performance cassette of the foregoing aspects and embodiments has at least 70% (e.g., at least 75%, 80%, 85%, 86%, 87%, 88%, 89%, 90%) of the following sequence: %, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 261. In some embodiments, the expression cassette has the nucleic acid sequence of SEQ ID NO: 256.
在一些實施例中,前述態樣及實施例之表現卡匣經併入前述態樣及實施例之載體中。在一些實施例中,該載體為複制缺陷型載體。在一些實施例中,該載體為哺乳動物、昆蟲、細菌或病毒載體。在一些實施例中,該載體為表現載體。在一些實施例中,該病毒載體係選自由以下所組成之群組:腺相關病毒 (AAV)、反轉錄病毒、腺病毒、細小病毒、冠狀病毒、負股 RNA 病毒、正黏液病毒、棒狀病毒、副黏液病毒、正股 RNA 病毒、小核糖核酸病毒、α 病毒、雙股 DNA 病毒、疱疹病毒、艾司坦-巴爾 (Epstein-Barr) 病毒、巨大細胞病毒、禽痘病毒及金絲雀痘病毒。在一些實施例中,該載體為 AAV 載體。在一些實施例中,該 AAV 載體為 AAV5、AAV9 或 AAVrh10 載體。In some embodiments, the presentation cassette of the aforementioned aspects and embodiments is incorporated into the carrier of the aforementioned aspects and embodiments. In some embodiments, the vector is a replication-deficient vector. In some embodiments, the vector is a mammalian, insect, bacterial, or viral vector. In some embodiments, the vector is an expression vector. In some embodiments, the viral vector system is selected from the group consisting of: adeno-associated virus (AAV), retrovirus, adenovirus, parvovirus, coronavirus, negative-strand RNA virus, orthomyxovirus, rod-shaped virus Viruses, paramyxoviruses, orthostranded RNA viruses, picornaviruses, alphaviruses, double-stranded DNA viruses, herpesviruses, Epstein-Barr virus, cytomegalovirus, fowlpox virus, and canaries Poxvirus. In some embodiments, the vector is an AAV vector. In some embodiments, the AAV vector is an AAV5, AAV9, or AAVrh10 vector.
另一方面,本揭露提供一種抑制細胞中 Grik2表現的方法,該方法包括使該細胞與前述態樣及實施例之至少一個多核苷酸、前述態樣及實施例之載體、或前述態樣及實施例之表現卡匣接觸。 On the other hand, the present disclosure provides a method for inhibiting the expression of Grik2 in a cell, which method includes contacting the cell with at least one polynucleotide of the aforementioned aspects and embodiments, a vector of the aforementioned aspects and embodiments, or the aforementioned aspects and embodiments. The embodiment shows the cassette contact.
在一些實施例中,該多核苷酸與 Grik2mRNA 特異性地雜交並抑制或降低細胞中 Grik2的表現 (如本揭露中進一步討論)。在一些實施例中,該方法將細胞中 Grik2之水平降低至少 10%、至少 15%、至少 20%、至少 25%、至少 30%、至少 40%、至少 45%、至少 50%、至少 55%、至少 60%、至少 65%、至少 70% 或至少 75%。在一些實施例中,該方法降低細胞中 GluK2 蛋白之水平。在一些實施例中,該方法將細胞中 GluK2 蛋白之水平降低至少 10%、至少 15%、至少 20%、至少 25%、至少 30%、至少 35%、至少 40%、至少 45%、至少 50%、至少 55%、至少 60%、至少 65%、至少 70% 或至少 75%。 In some embodiments, the polynucleotide specifically hybridizes to Grik2 mRNA and inhibits or reduces expression of Grik2 in the cell (as discussed further in this disclosure). In some embodiments, the method reduces the level of Grik2 in the cell by at least 10%, at least 15%, at least 20%, at least 25%, at least 30%, at least 40%, at least 45%, at least 50%, at least 55% , at least 60%, at least 65%, at least 70% or at least 75%. In some embodiments, the method reduces the level of GluK2 protein in the cell. In some embodiments, the method reduces the level of GluK2 protein in the cell by at least 10%, at least 15%, at least 20%, at least 25%, at least 30%, at least 35%, at least 40%, at least 45%, at least 50 %, at least 55%, at least 60%, at least 65%, at least 70% or at least 75%.
在一些實施例中,該細胞是人類細胞。在一些實施例中,該細胞為神經元 (例如,人類神經元)。在一些實施例中,該神經元為海馬神經元 (例如,人類海馬神經元)。在一些實施例中,該海馬神經元為 DGC (例如,人類 DGC 或錐體神經元)。在一些實施例中,該 DGC 包括復發苔狀纖維軸突。細胞亦可為衍生自誘導性富潛能幹細胞 (iPSC) 的神經元細胞,諸如表現 Grik2的 iPSC 衍生的麩胺酸能神經元。 In some embodiments, the cells are human cells. In some embodiments, the cell is a neuron (eg, human neuron). In some embodiments, the neuron is a hippocampal neuron (eg, human hippocampal neuron). In some embodiments, the hippocampal neuron is a DGC (e.g., human DGC or pyramidal neuron). In some embodiments, the DGCs comprise recurrent mossy fiber axons. The cells may also be neuronal cells derived from induced potentiated stem cells (iPSCs), such as iPSC-derived glutamatergic neurons expressing Grik2 .
在另一態樣中,本揭露提供一種治療或改善有此需要之個體的疾病之方法,該方法包括向個體投予前述態樣及實施例之至少一種多核苷酸、前述態樣及實施例之載體、或前述態樣及實施例之表現卡匣。In another aspect, the present disclosure provides a method of treating or ameliorating a disease in an individual in need thereof, the method comprising administering to the individual at least one polynucleotide of the aforementioned aspects and embodiments, the aforementioned aspects and embodiments The carrier, or the performance cassette of the aforementioned aspects and embodiments.
在一些實施例中,該病症為癲癇。在一些實施例中,該癲癇為顳葉癲癇 (TLE)、慢性癲癇及/或難治性癲癇。在一些實施例中,該癲癇為 TLE。在一些實施例中,該 TLE 為外側 (lateral) TLE (lTLE),諸如單側 TLE 及/或雙側 TLE。在一些實施例中,該 TLE 為內側 (mesial) TLE (mTLE)。In some embodiments, the condition is epilepsy. In some embodiments, the epilepsy is temporal lobe epilepsy (TLE), chronic epilepsy, and/or refractory epilepsy. In some embodiments, the epilepsy is TLE. In some embodiments, the TLE is a lateral TLE (ITLE), such as unilateral TLE and/or bilateral TLE. In some embodiments, the TLE is a mesial TLE (mTLE).
在一些實施例中,個體為人類。In some embodiments, the subject is a human.
在另一態樣中,本揭露提供一種醫藥組成物,其包括前述態樣及實施例之多核苷酸、前述態樣及實施例之載體、或前述態樣及實施例之表現卡匣,以及醫藥上可接受之載劑、稀釋劑或賦形劑。In another aspect, the present disclosure provides a pharmaceutical composition, which includes the polynucleotide of the aforementioned aspects and embodiments, the vector of the aforementioned aspects and embodiments, or the expression cassette of the aforementioned aspects and embodiments, and Pharmaceutically acceptable carriers, diluents or excipients.
在另一態樣中,本揭露提供一種套組,其包括前述態樣之醫藥組成物及藥品仿單。在一些實施例中,該藥品仿單包括該醫藥組成物在前述態樣及實施例之方法中的使用說明。 定義 In another aspect, the present disclosure provides a kit, which includes the pharmaceutical composition and drug instructions of the aforementioned aspect. In some embodiments, the drug package insert includes instructions for use of the pharmaceutical composition in the aforementioned aspects and methods of the embodiments. definition
為方便起見,下文提供說明書、實例及所附申請專利範圍中使用的一些術語及片語之含義。除非另有說明或從上下文中暗示,否則以下術語及片語包括下文提供的含義。提供該等定義以幫助描述特定之實施例,而非試圖限制所請之技術。除非另有定義,否則本文所使用之全部技術及科學術語具有與一般熟習本技術所屬技術者通常所理解者相同的含義。如果本領域術語的使用與其在本文中提供的定義之間存在明顯差異,則以說明書中提供的定義為準。For convenience, the following provides the meanings of some terms and phrases used in the description, examples, and appended patent claims. Unless stated otherwise or implied from context, the following terms and phrases include the meanings provided below. These definitions are provided to help describe particular embodiments and are not intended to limit the claimed technology. Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art. If there is an apparent discrepancy between the usage of a term in the art and its definition provided herein, the definition provided in the specification shall prevail.
在本申請中,除非上下文另有明確規定,否則 (i) 術語「一」可以理解為意指「至少一個」;(ii) 術語「或」可理解為意指「及/或」;以及 (iii) 術語「包括」及「包含」可以理解為涵蓋逐項列出的組件或步驟,無論是單獨呈現亦或是與一個或多個附加組件或步驟一起呈現。In this application, unless the context clearly dictates otherwise, (i) the term "a" may be understood to mean "at least one"; (ii) the term "or" may be understood to mean "and/or"; and ( iii) The terms "comprising" and "comprising" may be understood to cover the itemized components or steps, whether presented alone or together with one or more additional components or steps.
術語「約」指代所引述之值的 ±10% 並且可為所引述之值的 ±5% 或所引述之值的 ±2% 的量。The term "about" refers to an amount that is ±10% of the quoted value and may be ±5% of the quoted value or ±2% of the quoted value.
術語「3' 非轉譯區域」及「3' UTR」指代相對於 mRNA 分子 (例如, Grik2mRNA) 之終止密碼子的區域 3'。3' UTR 不轉譯為蛋白質,但包括對於 mRNA 轉錄本之多腺苷酸化、定位、穩定及/或轉譯效率很重要的調節序列。3' UTR 中之調節序列可包括增強子、緘默子、富含 AU 之元件、多腺苷酸尾、終止子及微小 RNA 辨識序列。術語「3' 非轉譯區域」及「3' UTR」亦可指代編碼 mRNA 分子的基因之相對應區域。 The terms "3' untranslated region" and "3'UTR" refer to the region 3' relative to the stop codon of an mRNA molecule (eg, Grik2 mRNA). The 3' UTR is not translated into protein but contains regulatory sequences important for polyadenylation, localization, stability, and/or translation efficiency of the mRNA transcript. Regulatory sequences in the 3' UTR may include enhancers, silencers, AU-rich elements, polyadenylate tails, terminators, and microRNA recognition sequences. The terms "3' untranslated region" and "3'UTR" may also refer to the corresponding region of a gene encoding an mRNA molecule.
術語「5' 非轉譯區域」及「5' UTR」指代相對於起始密碼子為 5' 的 mRNA 分子 (例如, Grik2mRNA) 之區域。該區域對於轉譯起始的調節很重要。5' UTR 可以完全不轉譯,或者可以在一些生物體中轉譯其一些區域。轉錄起始位點標記 5' UTR 的開始,並在起始密碼子前的一個核苷酸結束。在真核生物中,5' UTR 包括帶有起始密碼子的 Kozak 共有序列。5' UTR 可包括順式作用調節元件,也稱為上游開讀框,對轉譯之調節很重要。該區域亦可帶有上游 AUG 密碼子及終止密碼子。鑑於其高 GC 含量,5' UTR 可形成二級結構,諸如在轉譯調節中發揮作用的髮夾環。 The terms "5' untranslated region" and "5'UTR" refer to the region of an mRNA molecule (eg, Grik2 mRNA) that is 5' relative to the start codon. This region is important for the regulation of translation initiation. The 5' UTR may not be translated at all, or some of its regions may be translated in some organisms. The transcription start site marks the beginning of the 5' UTR and ends one nucleotide before the start codon. In eukaryotes, the 5' UTR includes the Kozak consensus sequence with the start codon. The 5' UTR can include cis-acting regulatory elements, also known as the upstream open reading frame, which are important in the regulation of translation. This region can also contain upstream AUG codons and stop codons. Given its high GC content, the 5' UTR can form secondary structures such as hairpin loops that play a role in translational regulation.
術語「投予」指代藉由任何有效途徑向個體提供或給予治療劑 (例如,結合至 Grik2mRNA 並抑制其表現的抑制性多核苷酸,或編碼該多核苷酸的載體,如本文所揭示)。示例性投予途徑在本文及下文中描述 (例如,腦室內注射、鞘內腔注射、實質內注射、靜脈內注射及立體定向注射)。 The term "administering" refers to providing or administering a therapeutic agent (e.g., an inhibitory polynucleotide that binds to Grik2 mRNA and inhibits its expression, or a vector encoding such a polynucleotide, as disclosed herein) to an individual by any effective route. ). Exemplary routes of administration are described herein and below (eg, intracerebroventricular, intrathecal, intraparenchymal, intravenous, and stereotaxic injection).
術語「腺相關病毒載體」或「AAV 載體」指代衍生自腺相關病毒血清型的載體,包括但不限於,AAV1、AAV2、AAV3、AAV4、AAV5、AAV6、AAV7、AAV8、AAV9、AAV10、AAV11、AAV12、AAV13、AAV14、AAV15、AAV16、AAV.rh8、AAV.rh10、AAV.rh20、AAV.rh39、AAV.Rh74、AAV.RHM4-1、AAV.hu37、AAV.Anc80、AAV.Anc80L65、AAV.7m8、AAV.PHP.B、AAV.PHP.eB、AAV2.5、AAV2tYF、AAV3B、AAV.LK03、AAV.HSC1、AAV.HSC2、AAV.HSC3、AAV.HSC4、AAV.HSC5、AAV.HSC6、AAV.HSC7、AAV.HSC8、AAV.HSC9、AAV.HSC10 、AAV.HSC11、AAV.HSC12、AAV.HSC13、AAV.HSC14、AAV.HSC15、AAV-TT、AAV-DJ8 或 AAV.HSC16。AAV 載體可全部或部分缺失 AAV 野生型基因中之一者或多者,例如 rep 及/或 cap 基因,但保留功能性側翼 ITR 序列。功能性 ITR 序列促進 AAV 病毒顆粒之救援、複製及包裝。因此,AAV 載體在本文中定義為至少包括病毒複製及包裝所需的彼等順式序列 (例如,功能性 ITR)。ITR 不需要為野生型多核苷酸序列並且可以被改變,例如,藉由核苷酸的插入、缺失或取代,只要該等序列提供功能性救援、複製及包裝。AAV 表現載體使用已知技術構建,以至少提供轉錄方向上的可操作地連接之組分、包括轉錄起始區域的控制元件、目標 DNA (例如,編碼本揭露之抑制性 RNA 劑的多核苷酸) 及轉錄終止區域。The term "adeno-associated viral vector" or "AAV vector" refers to vectors derived from adeno-associated virus serotypes, including, but not limited to, AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11 , AAV12, AAV13, AAV14, AAV15, AAV16, AAV.rh8, AAV.rh10, AAV.rh20, AAV.rh39, AAV.Rh74, AAV.RHM4-1, AAV.hu37, AAV.Anc80, AAV.Anc80L65, AAV .7m8, AAV.PHP.B, AAV.PHP.eB, AAV2.5, AAV2tYF, AAV3B, AAV.LK03, AAV.HSC1, AAV.HSC2, AAV.HSC3, AAV.HSC4, AAV.HSC5, AAV.HSC6 , AAV.HSC7, AAV.HSC8, AAV.HSC9, AAV.HSC10, AAV.HSC11, AAV.HSC12, AAV.HSC13, AAV.HSC14, AAV.HSC15, AAV-TT, AAV-DJ8 or AAV.HSC16. AAV vectors may delete all or part of one or more of the AAV wild-type genes, such as the rep and/or cap genes, but retain functional flanking ITR sequences. Functional ITR sequences facilitate the rescue, replication, and packaging of AAV virions. Therefore, AAV vectors are defined herein as including at least those cis-sequences required for viral replication and packaging (e.g., a functional ITR). The ITR need not be a wild-type polynucleotide sequence and may be altered, for example, by insertion, deletion, or substitution of nucleotides, so long as the sequences provide functional rescue, replication, and packaging. AAV expression vectors are constructed using known techniques to provide at least operably linked components in the direction of transcription, control elements including a transcription initiation region, target DNA (e.g., a polynucleotide encoding an inhibitory RNA agent of the present disclosure) ) and the transcription termination region.
術語「腺相關病毒反向末端重複序列」及「AAV ITR」指代本領域公認的位於 AAV 基因體各端側翼的區域,它們以順式方式一起作為 DNA 複製起點及病毒包裝訊號發揮作用。AAV ITR 連同 AAV rep編碼區域提供有效切除以及將插入在兩個側翼 ITR 之間的多核苷酸序列整合到哺乳動物基因體中。AAV ITR 區域之多核苷酸序列為已知的。如本文所用,「AAV ITR」不一定包括野生型多核苷酸序列,其可被改變,例如,藉由核苷酸的插入、缺失或取代。此外,AAV ITR 可衍生自幾種 AAV 血清型中之任一者,包括但不限於 AAV1、AAV2、AAV3、AAV4、AAV5、AAV6、AAV7、AAV8、AAV9、AAV10、AAV11、AAV12、AAV13、AAV14、AAV15、AAV16、AAV.rh8、AAV.rh10、AAV.rh20、AAV.rh39、AAV.Rh74、AAV.RHM4-1、AAV.hu37、AAV.Anc80、AAV.Anc80L65、AAV.7m8、AAV.PHP.B、AAV.PHP.eB、AAV2.5、AAV2tYF、AAV3B、AAV.LK03、AAV.HSC1、AAV.HSC2、AAV.HSC3、AAV.HSC4、AAV.HSC5、AAV.HSC6、AAV.HSC7、AAV.HSC8、AAV.HSC9、AAV.HSC10 、AAV.HSC11、AAV.HSC12、AAV.HSC13、AAV.HSC14、AAV.HSC15、AAV-TT、AAV-DJ8 或 AAV.HSC16 等。此外,位於 AAV 載體中所選多核苷酸序列側翼的 5' 及 3' ITR 不需要相同或衍生自相同的 AAV 血清型或分離物,只要它們按預期發揮作用,例如,以允許從宿主細胞基因體或載體中切除並救援目標序列,並在 AAV Rep 基因產物存在於細胞中時允許將異源序列整合到受體細胞基因體中。此外,AAV ITR 可衍生自幾種 AAV 血清型中之任一者,包括但不限於 AAV1、AAV2、AAV3、AAV4、AAV5、AAV6、AAV7、AAV8、AAV9、AAV10、AAV11、AAV12、AAV13、AAV14、AAV15、AAV16、AAV.rh8、AAV.rh10、AAV.rh20、AAV.rh39、AAV.Rh74、AAV.RHM4-1、AAV.hu37、AAV.Anc80、AAV.Anc80L65、AAV.7m8、AAV.PHP.B、AAV.PHP.eB、AAV2.5、AAV2tYF、AAV3B、AAV.LK03、AAV.HSC1、AAV.HSC2、AAV.HSC3、AAV.HSC4、AAV.HSC5、AAV.HSC6、AAV.HSC7、AAV.HSC8、AAV.HSC9、AAV.HSC10 、AAV.HSC11、AAV.HSC12、AAV.HSC13、AAV.HSC14、AAV.HSC15、AAV-TT、AAV-DJ8 或 AAV.HSC16 等。 The terms "adeno-associated virus inverted terminal repeat" and "AAV ITR" refer to the art-recognized regions flanking each end of the AAV genome, which together function in cis as DNA replication origins and viral packaging signals. The AAV ITR together with the AAV rep coding region provides for efficient excision and integration into the mammalian genome of the polynucleotide sequence inserted between the two flanking ITRs. The polynucleotide sequence of the AAV ITR region is known. As used herein, "AAV ITR" does not necessarily include wild-type polynucleotide sequences, which may be altered, for example, by insertion, deletion, or substitution of nucleotides. Additionally, AAV ITRs can be derived from any of several AAV serotypes, including, but not limited to, AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, AAV12, AAV13, AAV14, AAV15, AAV16, AAV.rh8, AAV.rh10, AAV.rh20, AAV.rh39, AAV.Rh74, AAV.RHM4-1, AAV.hu37, AAV.Anc80, AAV.Anc80L65, AAV.7m8, AAV.PHP. B. AAV.PHP.eB, AAV2.5, AAV2tYF, AAV3B, AAV.LK03, AAV.HSC1, AAV.HSC2, AAV.HSC3, AAV.HSC4, AAV.HSC5, AAV.HSC6, AAV.HSC7, AAV. HSC8, AAV.HSC9, AAV.HSC10, AAV.HSC11, AAV.HSC12, AAV.HSC13, AAV.HSC14, AAV.HSC15, AAV-TT, AAV-DJ8 or AAV.HSC16, etc. Furthermore, the 5' and 3' ITRs flanking the selected polynucleotide sequence in the AAV vector need not be the same or derived from the same AAV serotype or isolate, as long as they function as expected, e.g., to allow for the synthesis of host cell genes Excise and rescue the target sequence into the body or vector, and allow the heterologous sequence to be integrated into the recipient cell genome while the AAV Rep gene product is present in the cell. Additionally, AAV ITRs can be derived from any of several AAV serotypes, including, but not limited to, AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, AAV12, AAV13, AAV14, AAV15, AAV16, AAV.rh8, AAV.rh10, AAV.rh20, AAV.rh39, AAV.Rh74, AAV.RHM4-1, AAV.hu37, AAV.Anc80, AAV.Anc80L65, AAV.7m8, AAV.PHP. B. AAV.PHP.eB, AAV2.5, AAV2tYF, AAV3B, AAV.LK03, AAV.HSC1, AAV.HSC2, AAV.HSC3, AAV.HSC4, AAV.HSC5, AAV.HSC6, AAV.HSC7, AAV. HSC8, AAV.HSC9, AAV.HSC10, AAV.HSC11, AAV.HSC12, AAV.HSC13, AAV.HSC14, AAV.HSC15, AAV-TT, AAV-DJ8 or AAV.HSC16, etc.
術語「反義寡核苷酸」及「ASO」指代抑制性多核苷酸,其能夠透過互補鹼基配對與標靶 mRNA 分子 (例如, Grik2mRNA) 雜交並透過 mRNA 去穩定化及降解來抑制其表現,或抑制轉譯。 The terms "antisense oligonucleotide" and "ASO" refer to inhibitory polynucleotides that are capable of hybridizing to a target mRNA molecule (e.g., Grik2 mRNA) through complementary base pairing and inhibiting through mRNA destabilization and degradation Its performance, or inhibition of translation.
術語「cDNA」指代與 mRNA 序列等同的 DNA 核酸序列 (亦即,尿苷經胸苷取代)。通常,術語 cDNA 及 mRNA 可以在提及特定基因 (例如, Grik2基因) 時互換使用,因為熟習本領域者會理解 cDNA 序列與 mRNA 序列相同,只是尿苷被讀作胸苷。此外,在提到編碼本文所揭露之反義構建體的 DNA 序列或由其編碼的 RNA 轉錄本的情況下,除非上下文另有說明,否則術語「DNA」及「RNA」可互換使用以指代反義序列。此外,本文所揭露之某些 DNA 序列 (例如,彼等編碼 Grik2反義序列者) 可包含 RNA 核苷酸,在這種情況下,整個序列可稱為「DNA 序列」或「RNA 序列」。 The term "cDNA" refers to a DNA nucleic acid sequence that is identical to an mRNA sequence (ie, uridine is replaced by thymidine). Often, the terms cDNA and mRNA are used interchangeably when referring to a specific gene (eg, the Grik2 gene), as those skilled in the art will understand that the cDNA sequence is the same as the mRNA sequence, except that uridine is read as thymidine. Furthermore, where referring to DNA sequences encoding the antisense constructs disclosed herein or RNA transcripts encoded thereby, the terms "DNA" and "RNA" are used interchangeably to refer to Antisense sequence. Additionally, certain DNA sequences disclosed herein (eg, those encoding Grik2 antisense sequences) may include RNA nucleotides, in which case the entire sequence may be referred to as a "DNA sequence" or "RNA sequence."
術語「編碼序列」對應於編碼蛋白質或其部分的 mRNA 分子之核酸序列。相關地,「非編碼序列」對應於不編碼蛋白質或其部分的 mRNA 分子之核酸序列。非編碼序列的非限制性實例包括 5' 及 3' 非轉譯區域 (UTR)、內含子、多腺苷酸尾、啟動子、增強子、終止子及其他順式調節序列。The term "coding sequence" corresponds to the nucleic acid sequence of an mRNA molecule encoding a protein or part thereof. Relatedly, "non-coding sequences" correspond to nucleic acid sequences of the mRNA molecule that do not encode proteins or parts thereof. Non-limiting examples of non-coding sequences include 5' and 3' untranslated regions (UTRs), introns, polyadenylate tails, promoters, enhancers, terminators and other cis-regulatory sequences.
術語「互補」當用於描述與第二核苷酸或核苷序列相關的第一核苷酸或核苷序列時,指代包含第一核苷酸序列的多核苷酸在某些條件下與包括第二核苷酸序列的多核苷酸雜交並形成雙鏈體結構。例如,此類條件可為嚴格條件,其中嚴格條件可包括:400 mM NaCl、40 mM PIPES pH 6.4、1 mM EDTA、50℃ 或 70℃,持續 12 至 16 小時,然後洗滌 (參見,例如,「Molecular Cloning: A Laboratory Manual」,Sambrook 等人(1989) Cold Spring Harbor Laboratory Press)。可以應用其他條件,諸如在生物體內可能遇到的生理相關條件。根據雜交核苷酸或核苷的最終應用來確定最適合測試兩個序列之互補性的一組條件的方法為本領域中習知的。 The term "complementary" when used to describe a first nucleotide or nucleoside sequence that is related to a second nucleotide or nucleoside sequence refers to a polynucleotide comprising the first nucleotide sequence that under certain conditions is The polynucleotides including the second nucleotide sequence hybridize and form a duplex structure. For example, such conditions may be stringent conditions, where stringent conditions may include: 400 mM NaCl, 40 mM PIPES pH 6.4, 1 mM EDTA, 50°C, or 70°C for 12 to 16 hours, followed by washing (see, e.g., "Molecular Cloning: A Laboratory Manual", Sambrook et al. (1989) Cold Spring Harbor Laboratory Press). Other conditions may apply, such as physiologically relevant conditions that may be encountered in an organism. Methods to determine the set of conditions most suitable for testing the complementarity of two sequences, depending on the ultimate application of the hybridizing nucleotide or nucleoside, are well known in the art.
如本文所用,「互補」序列亦可包括非 Watson-Crick 鹼基對及/或由非天然及替代性核苷酸形成的鹼基對或完全由其形成,只要上述關於其等之雜交能力的要求得到滿足。此類非 Watson-Crick 鹼基對包括但不限於 G:U 搖擺或 Hoogstein 鹼基配對。如本文所述的多核苷酸與標靶序列之間的互補序列包括包含第一核苷酸序列的多核苷酸與包含第二核苷酸序列的多核苷酸在一個或兩個核苷酸序列之全長上的鹼基配對。此類序列在本文中可稱為相對於彼此「完全互補」。當第一序列在本文中指代為相對於第二序列「基本上互補」時,這兩個序列可為完全互補的或者它們可以在雜交形成多達 30 個鹼基對之雙鏈體後形成一個或多個,但通常不超過 10、9、8、7、6、5、4、3、2 或 1 個錯配鹼基對,同時保留在與其最終應用最相關的條件下雜交的能力,例如,結合至並抑制 mRNA,諸如 Grik2mRNA 之表現。例如,如果序列與目標 mRNA 之未中斷部分基本上互補,則多核苷酸與目標 mRNA 之至少一部分互補。 As used herein, "complementary" sequences may also include non-Watson-Crick base pairs and/or base pairs formed by or entirely formed from non-natural and alternative nucleotides, so long as the above with respect to their ability to hybridize Requirements are met. Such non-Watson-Crick base pairs include, but are not limited to, G:U wobble or Hoogstein base pairing. Complementary sequences between a polynucleotide and a target sequence as described herein include a polynucleotide comprising a first nucleotide sequence and a polynucleotide comprising a second nucleotide sequence in one or both nucleotide sequences. base pairing over its entire length. Such sequences may be referred to herein as "completely complementary" with respect to each other. When a first sequence is referred to herein as "substantially complementary" with respect to a second sequence, the two sequences may be completely complementary or they may, upon hybridization to form a duplex of up to 30 base pairs, form a or Multiple, but usually no more than 10, 9, 8, 7, 6, 5, 4, 3, 2, or 1 mismatched base pairs, while retaining the ability to hybridize under conditions most relevant to its end application, e.g. Binds to and inhibits the expression of mRNA, such as Grik2 mRNA. For example, a polynucleotide is complementary to at least a portion of a target mRNA if the sequence is substantially complementary to an uninterrupted portion of the target mRNA.
術語「互補區域」指代與基因、初級轉錄本、序列 (例如,標靶序列) 或經加工之 mRNA 的全部或部分基本上互補的抑制性多核苷酸之區域,以便干擾內源基因 (例如, Grik2) 的表現。在互補區域與標靶序列不完全互補的情況下,錯配可以在分子的內部或末端區域。通常,最被耐受的錯配發生在末端區域,例如,抑制性多核苷酸之 5'- 及/或 3'-末端的 5、4、3 或 2 個核苷酸內。 The term "complementary region" refers to a region of an inhibitory polynucleotide that is substantially complementary to all or part of a gene, primary transcript, sequence (e.g., a target sequence), or processed mRNA, so as to interfere with an endogenous gene (e.g., a target sequence) , the performance of Grik2 ). In cases where the complementary region is not completely complementary to the target sequence, the mismatch can be in the internal or terminal regions of the molecule. Typically, the most tolerated mismatches occur in terminal regions, eg, within 5, 4, 3, or 2 nucleotides of the 5'- and/or 3'-terminal end of the inhibitory polynucleotide.
術語「保留式胺基酸取代」、「保留式取代」及「保留式突變」指代一種或多種胺基酸取代一種或多種不同的胺基酸,此等胺基酸表現出相似的物理化學特性,諸如極性、靜電荷及立體體積。二十種天然存在之胺基酸中各者的此等特性總結在下表 1 中。
表 1. 天然存在之胺基酸的代表性物理化學特性
從該表中可以知悉,保留式胺基酸家族包括 (i) G、A、V、L 及 I;(ii) D 及 E;(iii) C、S 及 T;(iv) H、K 及 R;(v) N 及 Q;(vi) F、Y 及 W。因此,保留式突變或取代為用一個胺基酸取代相同胺基酸家族之成員 (例如,Ser 取代 Thr 或 Lys 取代 Arg)。 It can be seen from the table that the retained amino acid family includes (i) G, A, V, L and I; (ii) D and E; (iii) C, S and T; (iv) H, K and R; (v) N and Q; (vi) F, Y and W. Thus, a retention mutation or substitution is the substitution of an amino acid for a member of the same amino acid family (for example, Ser for Thr or Lys for Arg).
片語「使細胞與抑制性多核苷酸接觸」,諸如本文所揭露之抑制性多核苷酸,包括藉由任何可能的方式接觸細胞。使細胞與抑制性多核苷酸接觸包括使細胞在活體外與抑制性多核苷酸接觸或使細胞在活體內與抑制性多核苷酸接觸。使細胞與抑制性多核苷酸接觸亦可指代使細胞與編碼該抑制性多核苷酸的核酸載體或包含該核酸載體之醫藥組成物接觸。接觸可以直接或間接進行。因此,例如,可以由執行該方法的個體將抑制性多核苷酸置於與細胞物理接觸,或者替代地,可以將抑制性多核苷酸藥劑置於允許或導致其隨後與細胞接觸的情境下。在活體外接觸細胞可以藉由將細胞與抑制性多核苷酸一起孵育來完成。在活體內接觸細胞可以例如藉由將抑制性多核苷酸注射到細胞所在的組織中或附近,或藉由將抑制性多核苷酸藥劑注射到另一個區域,例如血流或皮下空間,使得藥劑隨後將到達待接觸之細胞所在的組織。活體外及活體內接觸方法的組合亦為可能的。例如,細胞亦可在活體外與抑制性多核苷酸接觸並隨後移植到個體中。The phrase "contacting a cell with an inhibitory polynucleotide", such as the inhibitory polynucleotides disclosed herein, includes contacting the cell by any possible means. Contacting the cell with the inhibitory polynucleotide includes contacting the cell with the inhibitory polynucleotide in vitro or contacting the cell with the inhibitory polynucleotide in vivo. Contacting a cell with an inhibitory polynucleotide may also refer to contacting a cell with a nucleic acid vector encoding the inhibitory polynucleotide or a pharmaceutical composition comprising the nucleic acid vector. Contact may be direct or indirect. Thus, for example, an inhibitory polynucleotide can be placed in physical contact with a cell by an individual performing the method, or alternatively, an inhibitory polynucleotide agent can be placed in a situation that permits or results in subsequent contact with the cell. Contacting cells in vitro can be accomplished by incubating the cells with an inhibitory polynucleotide. Contacting cells in vivo can be accomplished, for example, by injecting an inhibitory polynucleotide into or near the tissue where the cell is located, or by injecting an inhibitory polynucleotide agent into another area, such as the bloodstream or subcutaneous space, such that the agent It then reaches the tissue where the cells to be contacted are located. Combinations of in vitro and in vivo contact methods are also possible. For example, cells can also be contacted with inhibitory polynucleotides ex vivo and subsequently transplanted into an individual.
使細胞與抑制性多核苷酸接觸包括藉由促進或影響攝取或吸收到細胞中來「將抑制性多核苷酸引入或輸送到細胞中」。抑制性多核苷酸或編碼該抑制性多核苷酸的核酸載體的吸收或攝取可透過無輔助之擴散或活性細胞過程,或藉由輔助劑或裝置發生。將抑制性多核苷酸引入細胞可為在活體外及/或活體內。例如,對於活體內引入,抑制性多核苷酸可經注射到組織部位或全身性投予。活體外引入到細胞內包括本領域已知之方法,諸如電穿孔及脂質轉染。在另一實例中,可以藉由轉導將抑制性多核苷酸引入到細胞內,諸如藉由編碼抑制性多核苷酸的病毒載體。病毒載體可經歷細胞加工 (例如,細胞內化、衣殼脫落、抑制性多核苷酸之轉錄以及藉由 Drosha 及切丁酶加工) 以表現所編碼的抑制性多核苷酸。進一步的方法在下文中描述及/或在本領域中為已知的。Contacting the cell with the inhibitory polynucleotide includes "introducing or delivering the inhibitory polynucleotide into the cell" by promoting or affecting uptake or uptake into the cell. Uptake or uptake of an inhibitory polynucleotide or a nucleic acid vector encoding the inhibitory polynucleotide can occur by unassisted diffusion or active cellular processes, or by auxiliary agents or devices. Introduction of the inhibitory polynucleotide into the cell can be in vitro and/or in vivo. For example, for in vivo introduction, the inhibitory polynucleotide can be injected into the tissue site or administered systemically. In vitro introduction into cells includes methods known in the art, such as electroporation and lipofection. In another example, an inhibitory polynucleotide can be introduced into a cell by transduction, such as by a viral vector encoding the inhibitory polynucleotide. Viral vectors can undergo cellular processing (e.g., cellular internalization, capsid shedding, transcription of the inhibitory polynucleotide, and processing by Drosha and Dicer) to express the encoded inhibitory polynucleotide. Further methods are described below and/or are known in the art.
關於基因 (例如, Grik2) 之術語「破壞表現」、「抑制表現」或「減少表現」指代防止或降低功能基因產物 (例如,GluK2 蛋白) 的形成。如果基因產物實現其正常 (野生型) 功能,則它為功能性的。基因的破壞阻止或降低由該基因編碼的功能性蛋白質的表現。被破壞的基因可藉由例如干擾RNA分子 (例如 ASO) 破壞,諸如本文所述之彼等。 The terms "disrupt expression,""inhibitexpression," or "reduce expression" with respect to a gene (eg, Grik2 ) refer to preventing or reducing the formation of a functional gene product (eg, GluK2 protein). A gene product is functional if it fulfills its normal (wild-type) function. Disruption of a gene prevents or reduces the expression of the functional protein encoded by the gene. The disrupted gene can be disrupted, for example, by interfering RNA molecules (eg, ASOs), such as those described herein.
本文所述之組成物、載體構建體或病毒載體的術語「有效量」、「治療有效量」及「足量」指代當向個體 (包括哺乳動物,例如人類) 投予時足以影響有益或期望之結果 (包括臨床結果) 的數量。因此,「有效量」或其同義詞取決於其應用的上下文。例如,在治療顳葉癲癇 (TLE) 的情況下,相較於不投予組成物、載體構建體或病毒載體時獲得的反應,有效量為足以達成治療反應的組成物、載體構建體或病毒載體之量。對應於該量的本文所述給定組成物之量將依據多種因素而變化,諸如給定藥劑、醫藥調配物、投予途徑、疾病或疾患之類型及其嚴重程度、個體之身份 (例如,年齡、性別、體重)、接受治療的宿主,及/或在癲癇的情況下,癲癇病灶之尺寸 (例如,腦容量) 等,但仍然可以根據本領域中習知之方法來確定。此外,如本文所用,本揭露之組成物、載體構建體或病毒載體的「治療有效量」為,相較於對照,在個體中產生有益或期望結果的量。如本文所定義,本揭露之組成物、載體構建體、病毒載體或細胞的治療有效量可以藉由本領域已知之方法容易地確定。可以調整劑量方案以提供最佳治療反應。The terms "effective amount," "therapeutically effective amount," and "sufficient amount" of a composition, vector construct, or viral vector described herein mean sufficient to affect a beneficial or The number of desired outcomes (including clinical outcomes). Therefore, "effective amount" or its synonyms depend on the context in which it is applied. For example, in the case of treating temporal lobe epilepsy (TLE), an effective amount of a composition, vector construct, or virus is sufficient to achieve a therapeutic response as compared to the response obtained without administration of the composition, vector construct, or viral vector Amount of carrier. The amount corresponding to a given composition described herein will vary depending on a variety of factors, such as the given agent, the pharmaceutical formulation, the route of administration, the type of disease or disorder and its severity, the identity of the individual (e.g., age, gender, weight), the host being treated, and/or in the case of epilepsy, the size of the epileptic focus (eg, brain volume), etc., but can still be determined according to methods commonly known in the art. Additionally, as used herein, a "therapeutically effective amount" of a composition, vector construct, or viral vector of the present disclosure is an amount that produces a beneficial or desired result in an individual compared to a control. As defined herein, a therapeutically effective amount of a composition, vector construct, viral vector or cell of the present disclosure can be readily determined by methods known in the art. Dosage regimens can be adjusted to provide optimal therapeutic response.
術語「癲癇」指代一種或多種臨床表現為復發癲癇發作的神經系統疾病。癲癇可以按照國際抗癲癇聯盟的分類及術語 (ILAE;Berg 等人,2010) 根據電臨床症狀進行分類。此等症狀可以按照發病年齡、獨特的一組癲癇 (手術症候群) 及結構代謝原因進行分類,諸如:(A) 發病年齡:(i) 新生儿期,包括良性家族性新生兒癲癇 (BFNE)、早期肌陣攣性腦病 (EME)、Ohtahara 症候群;(ii) 嬰儿期,包括嬰兒癲癇伴移形性局灶性癲癇發作、West 症候群、嬰儿期肌陣攣性癲癇 (MEI)、良性嬰兒癲癇、良性家族性嬰兒癲癇、Dravet 症候群、非進行性疾病中的肌陣攣性腦病;(iii) 兒童期,包括熱性驚厥附加症 (FS+)、Panayiotopoulos 症候群、癲癇伴肌陣攣性失張性 (以前稱無定向) 癲癇發作、良性癲癇伴中央顳區域棘波 (BECTS)、體染色體顯性遺傳性夜發額葉癲癇 (ADNFLE)、遲發性兒童枕葉癲癇 (Gastaut 型)、癲癇伴肌陣攣性失神、Lennox-Gastaut 症候群、癲癇性腦病伴睡眠期間連續棘波 (CSWS)、Landau-Kleffner 症候群 (LKS)、兒童失神性癲癇 (CAE);(iv) 青春期至成年期,包括青少年失神性癲癇 (JAE)、青少年肌陣攣性癲癇 (JME)、僅伴全面強直間代性發作的癲癇、進行性肌陣攣性癲癇 (PME)、伴有聽覺特徵的體染色體顯性遺傳性癲癇 (ADEAF)、其他家族性顳葉癲癇;(v) 不同發病年齡,包括具有可變病灶的家族性局灶性癲癇 (兒童到成人)、反射性癲癇;(B) 獨特的一組癲癇 (手術症候群) 包括內側顳葉癲癇 (MTLE)、Rasmussen 症候群、痴笑樣癲癇發作伴下視丘錯構瘤、偏側抽搐-偏癱-癲癇;(C) 由結構代謝原因引起並組織的癲癇包括皮質發育畸形 (半側巨腦畸形、異位等)、神經皮膚症候群 (結節性硬化複合症及 Sturge-Weber 二氏症候群)、腫瘤、感染、創傷、血管瘤、週產期損傷、及中風。術語「難治性癲癇」指代醫藥治療難治的癲癇;也就是說,當前之醫藥治療無法有效治療患者的疾病 (例如,參見 Dario J. Englot 等人,2013)。The term "epilepsy" refers to one or more neurological disorders characterized by recurrent epileptic seizures. Epilepsy can be classified based on electroclinical symptoms according to the classification and terminology of the International League Against Epilepsy (ILAE; Berg et al., 2010 ). These symptoms can be classified according to age of onset, a unique group of epilepsy (operative syndromes) and structural metabolic causes, such as: (A) Age of onset: (i) Neonatal period, including benign familial neonatal epilepsy (BFNE), Early myoclonic encephalopathy (EME), Ohtahara syndrome; (ii) infancy, including infantile epilepsy with metamorphic focal seizures, West syndrome, myoclonic epilepsy of infancy (MEI), benign infantile epilepsy, Benign familial infantile epilepsy, Dravet syndrome, myoclonic encephalopathy in non-progressive disease; (iii) childhood, including febrile seizure plus (FS+), Panayiotopoulos syndrome, epilepsy with myoclonic atonia (formerly Seizures, benign epilepsy with centrotemporal spikes (BECTS), autosomal dominant nocturnal frontal lobe epilepsy (ADNFLE), late-onset childhood occipital epilepsy (Gastaut type), epilepsy with myoceles Absence syndrome, Lennox-Gastaut syndrome, epileptic encephalopathy with continuous spikes during sleep (CSWS), Landau-Kleffner syndrome (LKS), childhood absence epilepsy (CAE); (iv) adolescence to adulthood, including adolescent absence epilepsy Epilepsy (JAE), juvenile myoclonic epilepsy (JME), epilepsy with generalized tonic epilepsy only, progressive myoclonic epilepsy (PME), autosomal dominant epilepsy with auditory features ( ADEAF), other familial temporal lobe epilepsies; (v) different ages of onset, including familial focal epilepsy with variable foci (children to adults), reflex epilepsy; (B) a unique group of epilepsy (operative syndrome ) Including mesial temporal lobe epilepsy (MTLE), Rasmussen syndrome, gigolo-like seizures with hypothalamic hamartomas, hemiconvulsions-hemiplegia-epilepsy; (C) Epilepsy caused and organized by structural metabolic causes including malformations of cortical development ( Hemimegalencephaly, ectopia, etc.), neurocutaneous syndromes (tuberous sclerosis complex and Sturge-Weber syndrome), tumors, infections, trauma, hemangioma, perinatal injuries, and stroke. The term “refractory epilepsy” refers to epilepsy that is medically refractory; that is, current medical treatments are ineffective in treating the patient's disease (see, for example, Dario J. Englot et al., 2013).
術語「外顯子」指代基因 (例如, Grik2基因) 之編碼區域內之區域,其核苷酸序列決定了相對應蛋白質的胺基酸序列。術語「外顯子」亦指代從基因轉錄的 RNA 之相對應區域。外顯子經轉錄為前體 mRNA,並可能包括在成熟的 mRNA 中,取決於基因的選擇性剪接。加工後包括在成熟 mRNA 中的外顯子經轉譯為蛋白質。外顯子之序列決定了蛋白質的胺基酸組成。替代地,包括在成熟 mRNA 中的外顯子可為非編碼外顯子 (例如,不轉譯為蛋白質的外顯子)。 The term "exon" refers to the region within the coding region of a gene (eg, Grik2 gene) whose nucleotide sequence determines the amino acid sequence of the corresponding protein. The term "exon" also refers to the corresponding region of RNA transcribed from a gene. The exons are transcribed into pre-mRNA and may be included in mature mRNA, depending on alternative splicing of the gene. After processing, the exons included in the mature mRNA are translated into proteins. The sequence of exons determines the amino acid composition of the protein. Alternatively, exons included in mature mRNA may be non-coding exons (eg, exons that are not translated into protein).
當在基因或核酸之表現的上下文中使用時,術語「表現」指代將基因中所含有之資訊轉化為基因產物。基因產物可為基因之直接轉錄產物 (例如 mRNA、tRNA、rRNA、反義 RNA、核酶、結構 RNA 或任何其他類型的 RNA) 或藉由 mRNA 轉譯產生的蛋白質。基因產物亦包括藉由諸如加帽、多腺苷酸化、甲基化及編輯之過程修飾的 mRNA,以及通過藉由例如甲基化、乙醯化、磷酸化、泛素化、SUMO 化、ADP-核糖基化、肉豆蔻醯化及糖基化修飾的蛋白質 (例如 GluK2)。When used in the context of the expression of genes or nucleic acids, the term "expression" refers to the conversion of information contained in a gene into a gene product. A gene product can be a direct transcription product of a gene (such as mRNA, tRNA, rRNA, antisense RNA, ribozyme, structural RNA, or any other type of RNA) or a protein produced by translation of the mRNA. Gene products also include mRNA modified by processes such as capping, polyadenylation, methylation, and editing, and by processes such as methylation, acetylation, phosphorylation, ubiquitination, SUMOylation, ADP - Ribosylated, myristoylated and glycosylated proteins (e.g. GluK2).
術語「表現」指代以下一個或多個事件:(1) 從 DNA 序列產生 RNA 模板 (例如,藉由轉錄);(2) RNA 轉錄本的加工 (例如,藉由剪接、編輯、5' 帽形成及/或 3' 端加工);(3) 將 RNA 轉譯為多肽或蛋白質;及 (4) 多肽或蛋白質的轉譯後修飾。目標基因在個體中的表現可以例如藉由在從個體獲得的樣本中偵測以下項來證明:編碼相對應蛋白質的 mRNA 之數量或濃度的減少或增加 (如例如使用本文所述或本領域已知的 RNA 偵測程序,諸如定量聚合酶連鎖反應 (qPCR) 及 RNA seq 技術所評估的)、相對應蛋白質之數量或濃度的減少或增加 (如例如使用本文所述或本領域已知的蛋白質偵測方法,諸如酶聯免疫吸附檢定法 (ELISA) 等所評估的)、及/或相對應蛋白質之活性的減少或增加 (例如,在離子通道的情況下,如使用本文所述或本領域已知的電生理學方法所評估的)。The term "expression" refers to one or more of the following events: (1) generation of an RNA template from a DNA sequence (e.g., by transcription); (2) processing of the RNA transcript (e.g., by splicing, editing, 5' capping formation and/or 3' end processing); (3) translation of RNA into polypeptides or proteins; and (4) post-translational modification of polypeptides or proteins. Expression of a target gene in an individual can be demonstrated, for example, by detecting a decrease or increase in the amount or concentration of mRNA encoding the corresponding protein in a sample obtained from the individual (e.g., using methods described herein or known in the art). As assessed by known RNA detection procedures, such as quantitative polymerase chain reaction (qPCR) and RNA seq techniques), the corresponding decrease or increase in the amount or concentration of the protein (e.g., using proteins described herein or known in the art detection method, such as enzyme-linked immunosorbent assay (ELISA), etc.), and/or a decrease or increase in the activity of the corresponding protein (e.g., in the case of ion channels, as described herein or as described in the art. assessed by known electrophysiological methods).
術語「GluK2」,亦稱為「GluR6」、「GRIK2」、「MRT6」、「EAA4」或「GluK6」,指代麩胺酸促離子型受體紅藻氨酸型次單元 2 蛋白,如在目前使用的 IUPHAR 命名法 (Collingridge, G.L., Olsen, R.W., Peters, J., Spedding, M., 2009. A nomenclature for ligand-gated ion channels. Neuropharmacology 56, 2-5) 中所命名的。術語「含有 GluK2 之 KAR」、「GluK2 受體」、「GluK2 蛋白」及「GluK2 次單元」可在全文中互換使用,通常指代由 Grik2基因編碼或表現的蛋白質。 The term "GluK2", also known as "GluR6", "GRIK2", "MRT6", "EAA4" or "GluK6", refers to the glutamate ionotropic receptor kainate type subunit 2 protein, as in Named according to the currently used IUPHAR nomenclature (Collingridge, GL, Olsen, RW, Peters, J., Spedding, M., 2009. A nomenclature for ligand-gated ion channels. Neuropharmacology 56, 2-5). The terms "GluK2-containing KAR,""GluK2receptor,""GluK2protein" and "GluK2 subunit" are used interchangeably throughout the text and generally refer to the protein encoded or expressed by the Grik2 gene.
術語「引導股」及「引導序列」指代位於莖環結構之 5' 或 3' 莖環臂上的莖環 RNA 結構 (例如 shRNA 或微小 RNA) 之組分,其中該引導股/序列包括 Grik2mRNA 反義序列 (例如,以下中之任一者:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 及 SEQ ID NO: 242 至 SEQ ID NO: 245,或其與以下中之任一者之核酸序列具有至少 85% (例如至少 86%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的變體:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 及 SEQ ID NO: 242 至 SEQ ID NO: 245),該反義序列能夠結合至 Grik2mRNA 並抑制其表現。引導股/序列亦可包括額外的序列,諸如間隔子序列或連接子序列。引導序列可以與莖環 RNA 結構之隨從股/序列互補或基本上互補 (例如,具有不超過 7、6、5、4、3、2 或 1 個錯配)。 The terms "guide strand" and "guide sequence" refer to components of a stem-loop RNA structure (e.g., shRNA or microRNA) located on the 5' or 3' stem-loop arm of the stem-loop structure, where the guide strand/sequence includes Grik2 mRNA antisense sequence (e.g., any of the following: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245, or a nucleic acid sequence having at least Variants with 85% (e.g., at least 86%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) sequence identity: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245), this antisense sequence can bind to Grik2 mRNA and inhibit its expression. The leader/sequence may also include additional sequences, such as spacer sequences or linker sequences. The guide sequence may be complementary or substantially complementary (eg, with no more than 7, 6, 5, 4, 3, 2, or 1 mismatch) to the following strands/sequences of the stem-loop RNA structure.
術語「促離子型麩胺酸受體」包括 NMDA (N-甲基-D-天冬胺酸)、AMPA (α-胺基-3-羥基-5-甲基-4-異㗁唑丙酸) 及紅藻氨酸受體 (KAR) 類的成員。功能性 KAR 可以從名為 GluK1、GluK2、GluK3、GluK4 及 GluK5 次單元的五個次單元的同源或異源組合組裝成四聚物組件 (Reiner 等人,2012)。在一些情況下,本揭露之標靶為由 GluK2 及 GluK5 組成的 KAR 複合體。抑制 Grik2基因的表現足以消除 GluK2/GluK5 紅藻氨酸受體功能,因為觀察到 GluK5 次單元本身不會形成功能性同源通道。 The term "ionotropin glutamate receptor" includes NMDA (N-methyl-D-aspartate), AMPA (α-amino-3-hydroxy-5-methyl-4-isothiazopropionic acid) ) and members of the kainate receptor (KAR) class. Functional KARs can be assembled into tetrameric assemblies from homologous or heterologous combinations of five subunits named GluK1, GluK2, GluK3, GluK4, and GluK5 subunits (Reiner et al., 2012). In some cases, the target of the present disclosure is the KAR complex consisting of GluK2 and GluK5. Inhibition of the Grik2 gene is sufficient to eliminate GluK2/GluK5 kainate receptor function, as it was observed that the GluK5 subunit itself does not form a functional homologous channel.
「表現抑制劑」指代具有生物學效應以抑制或減少基因 (例如, Grik2基因) 之表現的藥劑 (例如,本揭露之抑制性 RNA 劑)。抑制基因 (例如, Grik2基因) 之表現,通常會導致標靶細胞或組織中基因產物 (蛋白質,例如 GluK2 蛋白) 的減少或甚至消除,但可能會實現不同水平的抑制。抑制或減少表現通常稱為敲低。 "Performance inhibitor" refers to an agent (eg, inhibitory RNA agent of the present disclosure) that has a biological effect to inhibit or reduce the expression of a gene (eg, Grik2 gene). The expression of a suppressor gene (eg, Grik2 gene) usually results in the reduction or even elimination of the gene product (protein, eg, GluK2 protein) in the target cell or tissue, but varying levels of inhibition may be achieved. Inhibiting or reducing performance is often called knockdown.
術語「經分離之多核苷酸」指代包括兩個或更多個經共價連接之核苷酸的經分離之分子。此類經共價連接之核苷酸亦可稱為核酸分子。一般而言,「經分離之」多核苷酸指代經人造、經化學合成、經純化及/或相對於該多核苷酸自其獲得之核酸序列為異源的多核苷酸。The term "isolated polynucleotide" refers to an isolated molecule comprising two or more covalently linked nucleotides. Such covalently linked nucleotides may also be referred to as nucleic acid molecules. Generally speaking, an "isolated" polynucleotide refers to a polynucleotide that is artificial, chemically synthesized, purified, and/or heterologous to the nucleic acid sequence from which the polynucleotide was obtained.
術語「微小 RNA」指代短的 (例如,通常為 22 個核苷酸) 非編碼 RNA 序列,其調節 mRNA 之轉譯並因此影響標靶蛋白質之豐度。一些微小 RNA 由單個、單順反子基因轉錄而來,而其他者則作為多順反子基因簇的一部分而經轉錄。微小 RNA 之結構可包括 5' 及 3' 側翼序列、包括莖及環序列的髮夾序列。在細胞內加工過程中期間,未成熟的微小 RNA 由 Drosha 截短,Drosha 切除 5' 及 3' 側翼序列。隨後,微小 RNA 分子從細胞核易位到細胞質,在那裡它進行藉由 Dicer 進行的環區域之切割。微小 RNA 的生物學作用透過結合至 mRNA 分子之區域 (通常為 3' 非轉譯區域) 並導致 mRNA 的切割、降解、不穩定及/或低效轉譯,從而在轉譯轉譯調節水平上發揮作用。微小 RNA 與其靶標的結合通常由微小 RNA 髮夾序列內之短 (例如,6 至 8 個核苷酸) 「種子區域/序列」介導。在整個揭露中,術語 siRNA 可包括其等同 miRNA,使得 miRNA 涵蓋與其等同 siRNA 相同的與標靶具有同源性的鹼基 (例如,在種子區域中)。如本文所述,微小 RNA 可為非天然存在的微小 RNA,諸如具有一個或多個異源核酸序列的微小 RNA。The term “microRNA” refers to short (e.g., typically 22 nucleotides) non-coding RNA sequences that regulate the translation of mRNA and thus affect the abundance of target proteins. Some microRNAs are transcribed from single, monocistronic genes, whereas others are transcribed as part of polycistronic gene clusters. The structure of microRNA can include 5' and 3' flanking sequences, hairpin sequences including stem and loop sequences. During intracellular processing, immature microRNAs are truncated by Drosha, which excises 5' and 3' flanking sequences. The microRNA molecule then translocates from the nucleus to the cytoplasm, where it undergoes cleavage of the loop region by Dicer. The biological effects of microRNAs are at the level of translational regulation by binding to regions of the mRNA molecule (usually the 3' untranslated region) and causing cleavage, degradation, instability and/or inefficient translation of the mRNA. Binding of a microRNA to its target is typically mediated by a short (e.g., 6 to 8 nucleotides) "seed region/sequence" within the microRNA hairpin sequence. Throughout this disclosure, the term siRNA may include its miRNA equivalents, such that a miRNA encompasses the same bases with homology to the target (e.g., in the seed region) as its equivalent siRNA. As described herein, a microRNA can be a non-naturally occurring microRNA, such as a microRNA having one or more heterologous nucleic acid sequences.
術語「核苷酸」定義為經修飾的或天然存在的去氧核糖核苷酸或核糖核苷酸。核苷酸通常包括嘌呤及嘧啶,該等嘌呤及嘧啶包括胸苷、胞苷、鳥苷、腺苷及尿苷。如本文所用,術語「抑制性多核苷酸」定義為上述定義的核苷酸或本文揭示的經修飾之核苷酸的寡聚物。術語「抑制性多核苷酸」指代 3'-5' 或 5'-3' 取向的核酸序列,其可以是單股或雙股的。在本揭露之上下文中使用的抑制性多核苷酸特別可為 DNA 或 RNA。該術語亦可包括「抑制性多核苷酸類似物」,其指代具有以下的抑制性多核苷酸:例如,(i) 經修飾之主鏈結構,例如,不同於在天然寡核苷酸及多核苷酸中發現之標準磷酸二酯鍵的主鏈,及 (ii) 視情況具有的經修飾之糖部分,例如,N-嗎啉基部分而非核糖或去氧核糖部分。抑制性多核苷酸類似物支持能夠藉由 Watson-Crick 鹼基配對與標準多核苷酸鹼基形成氫鍵鍵結的鹼基,其中類似物主鏈以允許抑制性多核苷酸類似物分子與標準多核苷酸 (例如,單股 RNA 或單股 DNA) 之鹼基之間以序列特異性方式形成氫鍵鍵結的方式呈現該等鹼基。個定而言,類似物為彼等具有基本上不帶電荷之含磷主鏈者。抑制性多核苷酸類似物中基本上不帶電荷之含磷主鏈為一種主鏈,其中大多數次單元鍵聯,例如 50% 至 100% 之間,通常至少 60% 至 100% 或 75% 或 80% 的其鍵聯為不帶電荷的且含有單個磷原子。此外,術語「抑制性多核苷酸」可包括抑制性多核苷酸序列,其相對於其正常轉錄方向為倒轉的,因此對應於與宿主細胞內表現的標靶基因 mRNA 分子互補之 RNA 或 DNA 序列。反義引導股可以以多種不同方式構建,條件是它能夠干擾標靶基因的表現。例如,反義引導股可以藉由相對於其正常轉錄方向反向與標靶基因之編碼區域 (或其一部分) 反向互補來構建,以允許其補體的轉錄,(例如,由反義基因及正義基因編碼的 RNA 可能是互補的)。抑制性多核苷酸不需要與標靶基因具有相同的內含子或外顯子模式,並且標靶基因之非編碼區段在實現標靶基因表現的反義抑制方面可以與編碼區段諸如 ASO 同樣有效。在一些情況下,抑制性 RNA 具有與標靶基因相同的外顯子模式。The term "nucleotide" is defined as a modified or naturally occurring deoxyribonucleotide or ribonucleotide. Nucleotides generally include purines and pyrimidines, including thymidine, cytidine, guanosine, adenosine, and uridine. As used herein, the term "inhibitory polynucleotide" is defined as an oligomer of a nucleotide as defined above or a modified nucleotide disclosed herein. The term "inhibitory polynucleotide" refers to a 3'-5' or 5'-3' oriented nucleic acid sequence, which may be single-stranded or double-stranded. Inhibitory polynucleotides used in the context of the present disclosure may specifically be DNA or RNA. The term may also include "inhibitory polynucleotide analogs," which refers to inhibitory polynucleotides that have, for example, (i) a modified backbone structure, e.g., that is different from that found in native oligonucleotides and The backbone of the standard phosphodiester bonds found in polynucleotides, and (ii) optionally having modified sugar moieties, for example, an N-morpholinyl moiety instead of a ribose or deoxyribose moiety. Inhibitory polynucleotide analogs support bases capable of hydrogen bonding with standard polynucleotide bases via Watson-Crick base pairing, where the analog backbone allows the inhibitory polynucleotide analog molecule to bond with the standard The bases of a polynucleotide (eg, single-stranded RNA or single-stranded DNA) exhibit hydrogen bonds between the bases in a sequence-specific manner. Specifically, analogs are those having a substantially uncharged phosphorus-containing backbone. The substantially uncharged phosphorus-containing backbone of the inhibitory polynucleotide analog is a backbone in which a majority of the subunits are bonded, e.g., between 50% and 100%, typically at least 60% to 100% or 75% Or 80% of its linkages are uncharged and contain a single phosphorus atom. Furthermore, the term "inhibitory polynucleotide" may include inhibitory polynucleotide sequences that are inverted relative to their normal direction of transcription and thus correspond to an RNA or DNA sequence that is complementary to a target gene mRNA molecule expressed within a host cell . The antisense leader can be constructed in a number of different ways, provided it interferes with the expression of the target gene. For example, an antisense leader can be constructed by being reverse complementary to the coding region (or a portion thereof) of a target gene in the opposite direction relative to its normal direction of transcription, allowing for the transcription of its complement, (e.g., from the antisense gene and The RNA encoded by the sense gene may be complementary). The inhibitory polynucleotide does not need to have the same intron or exon pattern as the target gene, and non-coding segments of the target gene can be as effective as coding segments such as ASO in achieving antisense inhibition of target gene expression. Equally valid. In some cases, the inhibitory RNA has the same exon pattern as the target gene.
抑制性多核苷酸可以具有允許靶向並雜交至 Grik2mRNA 的任何長度 (例如,抑制性多核苷酸與 Grik2mRNA 之至少一個區域完美地或基本上互補),並且可以為約 10 至 50 個鹼基對範圍之長度,例如,約 15 至 50 個鹼基對之長度或約 18 至 50 個鹼基對之長度,例如,約 10、11、12、13、14、15、16、17、18、19、20、21、22、23、24、25、26、27、28、29、30、31、32、33、34、35、36、37、38、39、40、41、42、43、44、45、46、47、48、49 或 50 個鹼基對之長度,諸如約 15 至 30、15 至 29、15 至 28、15 至 27、15 至 26、15 至 25、15 至 24、15 至 23、15 至 22、15 至 21、15 至 20、15 至 19、15 至 18、15 至 17、18 至 30、18 至 29、18 至 28、18 至 27、18 至 26、18 至 25、18 至 24、18 至 23、18 至 22、18 至 21、18 至 20、19 至 30、19 至 29、19 至 28、19 至 27、19 至 26、19 至 25、19 至 24、19 至 23、19 至 22、19 至 21、19 至 20、20 至 30、20 至 29、20 至 28、20 至 27、20 至 26、20 至 25、20 至 24,20 至 23、20 至 22、20 至 21、21 至 30、21 至 29、21 至 28、21 至 27、21 至 26、21 至 25、21 至 24、21 至 23、或 21 至 22 個鹼基對之長度。上述範圍及長度中間的範圍及長度亦視為本揭露之一部分。 The inhibitory polynucleotide can be of any length that allows targeting and hybridization to Grik2 mRNA (e.g., the inhibitory polynucleotide is perfectly or substantially complementary to at least one region of Grik2 mRNA) and can be about 10 to 50 bases Base pair ranges in length, for example, about 15 to 50 base pairs in length or about 18 to 50 base pairs in length, for example, about 10, 11, 12, 13, 14, 15, 16, 17, 18 ,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43 , 44, 45, 46, 47, 48, 49 or 50 base pairs in length, such as about 15 to 30, 15 to 29, 15 to 28, 15 to 27, 15 to 26, 15 to 25, 15 to 24 , 15 to 23, 15 to 22, 15 to 21, 15 to 20, 15 to 19, 15 to 18, 15 to 17, 18 to 30, 18 to 29, 18 to 28, 18 to 27, 18 to 26, 18 to 25, 18 to 24, 18 to 23, 18 to 22, 18 to 21, 18 to 20, 19 to 30, 19 to 29, 19 to 28, 19 to 27, 19 to 26, 19 to 25, 19 to 24 ,19 to 23,19 to 22,19 to 21,19 to 20,20 to 30,20 to 29,20 to 28,20 to 27,20 to 26,20 to 25,20 to 24,20 to 23,20 to 22, 20 to 21, 21 to 30, 21 to 29, 21 to 28, 21 to 27, 21 to 26, 21 to 25, 21 to 24, 21 to 23, or 21 to 22 base pairs in length. Ranges and lengths intermediate to the above ranges and lengths are also considered part of this disclosure.
術語「隨從股」及「隨從序列」指代位於莖環結構之 5' 或 3' 莖環臂上的莖環 RNA 結構 (例如,shRNA 或微小 RNA) 之組分,其包括與 Grik2mRNA 反義序列互補或基本上互補 (例如,具有不超過 7、6、5、4、3、2 或 1 個錯配) 的序列 (例如,以下中之任一者:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233、及 SEQ ID NO: 242 至 SEQ ID NO: 245,或其與以下中之任一者之核酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的變體:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233、及 SEQ ID NO: 242 至 SEQ ID NO: 245)。隨從股/序列亦可包括額外的序列,諸如間隔子序列或連接子序列。隨從序列可以與莖環 RNA 結構之引導股/序列互補或基本上互補。 The terms "traveler strand" and "traveler sequence" refer to components of a stem-loop RNA structure (e.g., shRNA or microRNA) located on the 5' or 3' stem-loop arm of the stem-loop structure, including those that are antisense to Grik2 mRNA Sequences that are complementary or substantially complementary (e.g., have no more than 7, 6, 5, 4, 3, 2, or 1 mismatch) (e.g., any of the following: SEQ ID NO: 16 to SEQ ID NO : 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 , and SEQ ID NO: 242 to SEQ ID NO: 245, or it shares at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%) with the nucleic acid sequence of any of the following %, 99% or more (e.g., 100%)) Variants of sequence identity: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233, and SEQ ID NO: 242 to SEQ ID NO: 245). The companion strand/sequence may also include additional sequences, such as spacer sequences or linker sequences. The follower sequence may be complementary or substantially complementary to the leader/sequence of the stem-loop RNA structure.
術語「質體」指代染色體外的環狀雙股 DNA 分子,另外的 DNA 區段可以經連接到該分子中。質體為一種類型之載體,為能夠傳送已與其連接之另一種核酸的核酸分子。某些質體能夠在引入他們的宿主細胞 (例如具有細菌複製起始點的細菌質體,及附加型哺乳動物質體) 中自主複製。其他載體 (例如,非附加型哺乳動物載體) 可在引入宿主細胞中後整合在宿主細胞之基因體中,從而與宿主基因體一起複製。某些質體能夠指導與其可操作連接之基因的表現。如本文所用,「基因」指代編碼蛋白質、微小 RNA、siRNA、shRNA、shmiRNA 的多核苷酸,並且進一步包含一個或多個調節序列 (例如,啟動子、增強子、內含子、終止序列等)。The term "plastid" refers to an extrachromosomal circular double-stranded DNA molecule into which additional DNA segments can be ligated. A plasmid is a type of vector, a nucleic acid molecule capable of transporting another nucleic acid to which it has been linked. Certain plastids are able to replicate autonomously in the host cell into which they are introduced (e.g., bacterial plastids with bacterial origins of replication, and episomal mammalian plastids). Other vectors (e.g., non-episomal mammalian vectors) can be introduced into a host cell and integrated into the host cell's genome, thereby replicating with the host genome. Certain plastids are capable of directing the expression of genes to which they are operably linked. As used herein, "gene" refers to a polynucleotide encoding a protein, microRNA, siRNA, shRNA, shmiRNA, and further includes one or more regulatory sequences (e.g., promoter, enhancer, intron, termination sequence, etc. ).
術語「啟動子」指代 DNA 上的被 RNA 聚合酶結合的辨識位點。聚合酶驅動多核苷酸之轉錄。適合與本文所述組成物及方法合用的示例性啟動子描述於例如 Sandelin 等人,Nature Reviews Genetics 8:424 (2007) (其揭露藉由引用併入本文),因為它屬於核酸調節元件。此外,術語「啟動子」可指代合成啟動子,其是在生物系統中不天然存在的調節性 DNA 序列。合成啟動子包含與自然界中不存在的多核苷酸序列組合之天然存在的啟動子部分,並且可以使用多種多核苷酸、載體及標靶細胞類型進行優化以表現重組 DNA。The term "promoter" refers to the recognition site on DNA that is bound by RNA polymerase. Polymerase drives the transcription of polynucleotides. Exemplary promoters suitable for use with the compositions and methods described herein are described, for example, in Sandelin et al., Nature Reviews Genetics 8:424 (2007) (the disclosure of which is incorporated herein by reference) as it is a nucleic acid regulatory element. Additionally, the term "promoter" may refer to synthetic promoters, which are regulatory DNA sequences that do not occur naturally in biological systems. Synthetic promoters contain naturally occurring promoter portions combined with polynucleotide sequences that do not occur in nature, and can be optimized for expression of recombinant DNA using a variety of polynucleotides, vectors, and target cell types.
關於參考多核苷酸或多肽序列的「百分比 (%) 序列同一性」定義為,在比對序列並引入缺口 (如有必要) 以獲得最大的序列同一性百分比之後,候選序列中與參考多核苷酸或多肽序列中之核酸或胺基酸相同的核酸或胺基酸之百分比。為確定百分比核酸或胺基酸序列同一性之目的而進行的比對可透過本領域中技術範圍內之各種方式實現,例如,使用公眾可取得的電腦軟體諸如 BLAST、BLAST-2 或 Megalign 軟體。使用公認及習用方法,可確定用於比對序列之合適參數,包括在所比較之序列全長上實現最大比對所需之任何算法。例如,百分比序列同一性值可以使用序列比較電腦程式 BLAST 產生。作為例示,給定核酸或胺基酸序列 A 與或針對給定核酸或胺基酸序列 B 的序列同一性百分比 (亦可表述為與或針對給定核酸或胺基酸序列 B 具有一定百分比之序列同一性的給定核酸或胺基酸酸序列 A) 計算如下: 100 乘以 (分數 X/Y) 其中 X 為在 A 與 B 的程式比對中由序列比對程序 (例如 BLAST) 評分為相同匹配的核苷酸或胺基酸的數量,並且其中 Y 為 B 中核酸的總數。當核酸或胺基酸序列 A 的長度不等於核酸或胺基酸序列 B 的長度時,A 與 B 的序列同一性百分比將不等於 B 與 A 的序列同一性百分比。無論候選序列與參考多核苷酸或多肽序列之間的百分比序列同一性如何,候選序列皆保留至少 20%、30%、40%、50%、60%、70%、75%、80%、85%、90%、95%、97%、99% 或 100% 的功能 (例如,降低如本文所定義之 Grik2mRNA 之水平或如所定義本文之 GluK2 蛋白的表現水平的能力) 的參考多核苷酸或多肽序列。 "Percent (%) sequence identity" with respect to a reference polynucleotide or polypeptide sequence is defined as the number of nucleotides in the candidate sequence that are identical to the reference polynucleotide after aligning the sequences and introducing gaps (if necessary) to obtain the maximum percent sequence identity. The percentage of nucleic acids or amino acids in an acid or polypeptide sequence that are identical. Alignment for the purpose of determining percent nucleic acid or amino acid sequence identity can be accomplished by a variety of means within the skill of the art, for example, using publicly available computer software such as BLAST, BLAST-2 or Megalign software. Appropriate parameters for aligning sequences can be determined using generally accepted and customary methods, including any algorithms required to achieve maximal alignment over the entire length of the sequences being compared. For example, percent sequence identity values can be generated using the sequence comparison computer program BLAST. As an example, the percentage of sequence identity of a given nucleic acid or amino acid sequence A with or against a given nucleic acid or amino acid sequence B (can also be expressed as a certain percentage of sequence identity with or against a given nucleic acid or amino acid sequence B Sequence identity for a given nucleic acid or amino acid sequence A) is calculated as follows: 100 times (score X/Y) where The number of identical matching nucleotides or amino acids, and where Y is the total number of nucleic acids in B . When the length of nucleic acid or amino acid sequence A is not equal to the length of nucleic acid or amino acid sequence B, the percent sequence identity between A and B will not be equal to the percent sequence identity between B and A. Regardless of the percent sequence identity between the candidate sequence and the reference polynucleotide or polypeptide sequence, the candidate sequence retains at least 20%, 30%, 40%, 50%, 60%, 70%, 75%, 80%, 85 A reference polynucleotide that is %, 90%, 95%, 97%, 99% or 100% functional (e.g., the ability to reduce the level of Grik2 mRNA as defined herein or the expression level of GluK2 protein as defined herein) or polypeptide sequence.
術語「醫藥上可接受之」指代彼等化合物、材料、組成物及/或劑型,其適合於與個體諸如哺乳動物 (例如人,人類) 之組織接觸而沒有過度的毒性、刺激、過敏反應及其他問題併發症,與合理的收益/風險比相稱。The term "pharmaceutically acceptable" refers to those compounds, materials, compositions and/or dosage forms that are suitable for contact with tissue of an individual such as a mammal (e.g. human, human) without undue toxicity, irritation, allergic reaction and other problematic complications, commensurate with a reasonable benefit/risk ratio.
如本文所用,術語「醫藥組成物」表示含有本文所述化合物 (例如,抑制性核酸分子 (例如,RNA) 或含有該化合物的載體) 與醫藥上可接受的賦形劑一起調配的組成物,並且在一些情況下可以在政府監管機構的批准下製造或銷售,作為治療哺乳動物疾病的治療方案之一部分。醫藥組成物可以調配為例如單位劑量形式的口服投予 (例如,錠劑、膠囊劑、膠囊型錠劑、凝膠膠囊或糖漿劑)、局部投予 (例如,作為乳膏、凝膠、洗劑或軟膏)、靜脈內投予 (例如,作為不含顆粒栓的無菌溶液且在適合靜脈內使用的溶劑系統中)、鞘內腔注射、腦室內注射、實質內注射或任何其他醫藥上可接受之調配物。As used herein, the term "pharmaceutical composition" means a composition containing a compound described herein (e.g., an inhibitory nucleic acid molecule (e.g., RNA) or a vehicle containing the compound) formulated together with a pharmaceutically acceptable excipient, and may, in some cases, be manufactured or sold with the approval of government regulatory agencies as part of a treatment regimen to treat a disease in mammals. Pharmaceutical compositions may be formulated, for example, in unit dosage form for oral administration (e.g., tablets, capsules, caplets, gel capsules, or syrups), for topical administration (e.g., as creams, gels, lotions, agent or ointment), intravenous administration (e.g., as a sterile solution without particulate plugs and in a solvent system suitable for intravenous use), intrathecal injection, intracerebroventricular injection, intraparenchymal injection, or any other pharmaceutically acceptable Acceptance of concoctions.
「醫藥上可接受之賦形劑」指代除本文所述化合物之外的任何成分 (例如,能夠懸浮或溶解活性化合物的媒液) 並且具有對患者基本上無毒且無炎性的特性。賦形劑可包括,例如:抗粘劑、抗氧化劑、接著劑、包衣劑、壓縮助劑、崩解劑、染劑 (色素)、潤膚劑、乳化劑、填充劑 (稀釋劑)、成膜劑或包衣劑、風味劑、香料、助流劑 (流動增強劑)、潤滑劑、防腐劑、印刷油墨、吸附劑、懸浮劑或分散劑、甜味劑及水合之水。示例性賦形劑包括但不限於丁基化羥基甲苯 (BHT)、碳酸鈣、磷酸氫鈣、硬脂酸鈣、交聯羧甲基纖維素、交聯聚乙烯吡咯啶酮、檸檬酸、交聯聚維酮、半胱胺酸、乙基纖維素、明膠、羥丙基纖維素、羥丙基甲基纖維素、乳糖、硬脂酸鎂、麥芽糖醇、甘露醇、甲硫胺酸、甲基纖維素、對羥基苯甲酸甲酯、微晶纖維素、聚乙二醇、聚乙烯吡咯啶酮、聚乙烯吡咯烷酮、預膠化澱粉、對羥基苯甲酸丙酯、棕櫚酸視黃酯、蟲膠、二氧化矽、羧甲基纖維素鈉、檸檬酸鈉、澱粉乙醇酸鈉、山梨糖醇、澱粉 (玉米)、硬脂酸、蔗糖、滑石粉、二氧化鈦、維生素 A、維生素 E、維生素 C 及木糖醇。"Pharmaceutically acceptable excipient" refers to any ingredient other than a compound described herein (e.g., a vehicle capable of suspending or dissolving the active compound) that is substantially non-toxic and non-inflammatory to the patient. Excipients may include, for example: anti-adhesive agents, antioxidants, adhesives, coating agents, compression aids, disintegrating agents, dyes (pigments), emollients, emulsifiers, fillers (diluents), Film-forming agents or coating agents, flavors, fragrances, glidants (flow enhancers), lubricants, preservatives, printing inks, adsorbents, suspending or dispersing agents, sweeteners and water of hydration. Exemplary excipients include, but are not limited to, butylated hydroxytoluene (BHT), calcium carbonate, calcium hydrogen phosphate, calcium stearate, croscarmellose, crospolyvinylpyrrolidone, citric acid, crosslinked Dipovidone, cysteine, ethyl cellulose, gelatin, hydroxypropyl cellulose, hydroxypropyl methylcellulose, lactose, magnesium stearate, maltitol, mannitol, methionine, formazan Cellulose, methylparaben, microcrystalline cellulose, polyethylene glycol, polyvinylpyrrolidone, polyvinylpyrrolidone, pregelatinized starch, propylparaben, retinyl palmitate, insecticides Gum, silicon dioxide, sodium carboxymethylcellulose, sodium citrate, sodium starch glycolate, sorbitol, starch (corn), stearic acid, sucrose, talc, titanium dioxide, vitamin A, vitamin E, vitamin C and xylitol.
本文所述的化合物 (例如,抑制性核酸分子 (例如,RNA) 及包含其的載體) 可具有可離子化之基團,以便能夠製備為醫藥上可接受之鹽。此等鹽可以是涉及無機酸或有機酸的酸加成鹽,或者在本文所述化合物之酸性形式的情況下,此等鹽可以由無機鹼或有機鹼製備。通常,化合物作為醫藥上可接受之鹽製備或使用,製備為醫藥上可接受之酸或鹼的加成產物。合適的醫藥上可接受之酸及鹼以及製備合適之鹽的方法是本領域習知的。鹽可以由醫藥上可接受至無毒酸及鹼製備,包括無機及有機酸及鹼。代表性的酸加成鹽包括乙酸鹽、己二酸鹽、藻酸鹽、抗壞血酸鹽、天冬胺酸鹽、苯磺酸鹽、苯甲酸鹽、硫酸氫鹽、硼酸鹽、丁酸鹽、樟腦酸鹽、樟腦磺酸鹽、檸檬酸鹽、環戊烷丙酸鹽、二葡糖酸鹽、十二烷基硫酸鹽、乙磺酸鹽、延胡索酸鹽、葡庚糖酸鹽、甘油磷酸鹽、半硫酸鹽、庚酸鹽、己酸鹽、氫溴酸鹽、鹽酸鹽、氫碘酸鹽、2-羥基乙磺酸鹽、乳糖酸鹽、乳酸鹽、月桂酸鹽、月桂基硫酸鹽、蘋果酸鹽、順丁烯二酸鹽、丙二酸鹽、甲磺酸鹽、2-萘磺酸鹽、菸鹼酸鹽、硝酸鹽、油酸鹽、草酸鹽、棕櫚酸鹽、雙羥萘酸鹽、果膠酸鹽、過硫酸鹽、3-苯基丙酸鹽、磷酸鹽、苦味酸鹽、新戊酸鹽、丙酸鹽、硬脂酸鹽、琥珀酸鹽、硫酸鹽、酒石酸鹽、硫氰酸鹽、甲苯磺酸鹽、十一酸鹽及戊酸鹽。代表性的鹼金屬或鹼土金屬鹽包括鈉、鋰、鉀、鈣及鎂,以及無毒的銨、四級銨及胺陽離子,包括但不限於銨、四甲基銨、四乙基銨、甲胺、二甲胺、三甲胺,三乙胺及乙胺。The compounds described herein (e.g., inhibitory nucleic acid molecules (e.g., RNA) and vectors containing the same) may have ionizable groups to enable preparation of pharmaceutically acceptable salts. Such salts may be acid addition salts involving inorganic or organic acids, or in the case of acidic forms of the compounds described herein, such salts may be prepared from inorganic or organic bases. Typically, the compounds are prepared or used as pharmaceutically acceptable salts, or as pharmaceutically acceptable acid or base addition products. Suitable pharmaceutically acceptable acids and bases, as well as methods for preparing suitable salts, are well known in the art. Salts can be prepared from pharmaceutically acceptable to nontoxic acids and bases, including inorganic and organic acids and bases. Representative acid addition salts include acetate, adipate, alginate, ascorbate, aspartate, benzenesulfonate, benzoate, bisulfate, borate, butyrate, Camphorate, camphorsulfonate, citrate, cyclopentane propionate, digluconate, lauryl sulfate, ethanesulfonate, fumarate, glucoheptonate, glycerophosphate , hemisulfate, enanthate, caproate, hydrobromide, hydrochloride, hydroiodide, 2-hydroxyethanesulfonate, lactobionate, lactate, laurate, lauryl sulfate , malate, maleate, malonate, methanesulfonate, 2-naphthalenesulfonate, nicotinate, nitrate, oleate, oxalate, palmitate, bis Hydroxylate, pectate, persulfate, 3-phenylpropionate, phosphate, picrate, pivalate, propionate, stearate, succinate, sulfate, Tartrate, thiocyanate, tosylate, undecanoate and valerate. Representative alkali metal or alkaline earth metal salts include sodium, lithium, potassium, calcium and magnesium, as well as non-toxic ammonium, quaternary ammonium and amine cations including, but not limited to, ammonium, tetramethylammonium, tetraethylammonium, methylamine , dimethylamine, trimethylamine, triethylamine and ethylamine.
術語「調節序列」包括啟動子、增強子及其他控制基因之轉錄或轉移的表現控制元件 (例如多腺苷酸化訊息序列)。此類調節序列在例如 Perdew 等人,Regulation of Gene Expression (Humana Press, New York, NY, (2014)) 中有所描述;藉由引用併入本文。The term "regulatory sequence" includes promoters, enhancers, and other expression control elements (such as polyadenylation message sequences) that control the transcription or transfer of a gene. Such regulatory sequences are described, for example, in Perdew et al., Regulation of Gene Expression (Humana Press, New York, NY, (2014)); incorporated herein by reference.
術語「標靶」或「靶向」指代抑制性核酸分子 (例如,RNA),諸如本文所述的抑制性 RNA 劑,透過互補性鹼基配對特異性地結合至 Grik2基因或編碼 GluK2 蛋白的 mRNA。 The term "target" or "targeting" refers to an inhibitory nucleic acid molecule (e.g., RNA), such as an inhibitory RNA agent described herein, that specifically binds to the Grik2 gene or the GluK2 protein encoding through complementary base pairing. mRNA.
術語「短干擾 RNA」及「siRNA」指代含有雙股核酸的抑制性多核苷酸,其中各股包含 RNA、RNA 類似物或 RNA 及 DNA。siRNA 分子可包括 19 至 23 個之間的核苷酸 (例如,21 個核苷酸)。siRNA 通常在各股之 3' 末端具有 2 bp 突出端,使得 siRNA 中之雙鏈體區域包含 17 至 21 個核苷酸 (例如,19 個核苷酸)。通常,siRNA 之反義股與標靶基因/RNA 之標靶序列充分互補。siRNA 分子在 RNA 干擾通路內操作,藉由與標靶 mRNA (例如, Grik2mRNA) 結合並透過 Dicer 介導的 mRNA 切割降解該 mRNA 來抑制 mRNA 表現。在整個揭露中,術語 siRNA 意在包括其等同之 miRNA,使得 miRNA 涵蓋與其等同之 siRNA 相同的與標靶具有同源性的鹼基。 The terms "short interfering RNA" and "siRNA" refer to inhibitory polynucleotides containing double-stranded nucleic acids, where each strand contains RNA, RNA analogs, or RNA and DNA. siRNA molecules can include between 19 and 23 nucleotides (eg, 21 nucleotides). siRNA typically has a 2 bp overhang at the 3' end of each strand, such that the duplex region in the siRNA contains 17 to 21 nucleotides (eg, 19 nucleotides). Typically, the antisense strand of siRNA is fully complementary to the target sequence of the target gene/RNA. siRNA molecules operate within the RNA interference pathway, inhibiting mRNA expression by binding to target mRNA (eg, Grik2 mRNA) and degrading it through Dicer-mediated mRNA cleavage. Throughout this disclosure, the term siRNA is intended to include its equivalents, such that a miRNA encompasses the same base homology to the target as its equivalent siRNA.
術語「短髮夾 RNA」及「shRNA」指代含有 50 至 100 個核苷酸之單股 RNA 的抑制性多核苷酸,其在細胞中形成莖環結構,該莖環結構包含 5 至 30 個核苷酸的環區域,以及在該環區域兩側的 15 至 50 個核苷酸之長互補 RNA,該等長互補 RNA 藉由該等互補 RNA 序列之間的鹼基配對形成雙股莖;以及,在某些情況下,在形成該莖的各互補股之前及之後包括的額外 1 至 500 個核苷酸。例如,shRNA 通常需要髮夾之特異性序列 3' 來終止 RNA 聚合酶的轉錄。由於包含短的 5' 及 3' 側翼序列,此類 shRNA 通常會繞過 Drosha 的處理。其他 shRNA,諸如從 RNA 聚合酶 II 轉錄的「shRNA 樣微小 RNA」,包括較長的 5' 及 3' 側翼序列,且需要在細胞核中由 Drosha 加工,之後經切割之 shRNA 從細胞核輸出到胞質液並在胞質液中由 Dicer 進一步切割。與 siRNA 一樣,shRNA 以序列特異性方式結合至標靶 mRNA,從而切割並破壞標靶 mRNA,並因此抑制標靶 mRNA 的表現。The terms "short hairpin RNA" and "shRNA" refer to inhibitory polynucleotides containing single-stranded RNAs of 50 to 100 nucleotides that form a stem-loop structure in cells containing 5 to 30 nucleotides. A loop region of nucleotides, and 15 to 50 nucleotides long complementary RNAs on both sides of the loop region, which form a double-stranded stem through base pairing between the complementary RNA sequences; and, in some cases, an additional 1 to 500 nucleotides included before and after each complementary strand forming the stem. For example, shRNA often requires specific sequences 3' of the hairpin to terminate transcription by RNA polymerase. These shRNAs often bypass Drosha processing because they contain short 5' and 3' flanking sequences. Other shRNAs, such as "shRNA-like microRNAs" transcribed from RNA polymerase II, include longer 5' and 3' flanking sequences and require processing by Drosha in the nucleus, followed by export of the cleaved shRNA from the nucleus to the cytoplasm liquid and further cleaved by Dicer in the cytosol. Like siRNA, shRNA binds to the target mRNA in a sequence-specific manner, thereby cleaving and destroying the target mRNA and thereby inhibiting the expression of the target mRNA.
如本文所用,術語「特異性地雜交」及「特異性地結合」指代多核苷酸與標靶核酸 (例如, Grik2mRNA) 之間具有足夠程度的互補性以誘導所需效應 (例如,降低或抑制來自 Grik2mRNA 的 GluK2 表現),同時對非標靶核酸表現出極小的效應或沒有效應。特異性雜交或結合可以在生理條件下發生。例如,當與相對應標靶核酸 (例如,mRNA 序列) 處之核鹼基互補的多核苷酸 (例如,反義多核苷酸) 中之核鹼基的數量促進該多核苷酸貼合至該標靶核酸而非貼合至非標靶核酸 (例如,互補性對應於,例如,多核苷酸之結合部分與標靶核酸的百分比序列同一性為 80% 或更高 (例如,85%、90%、95%、97%、99% 或 100%)) 時,發生特異性雜交或結合。本領域技術人員將理解,在這種情況下,多核苷酸 (例如,反義寡聚體) 中之核酸序列與標靶核酸中之核酸序列具有高度互補性 (例如,至少約 80%、85%、90%、95%、97%、99% 或 100% 互補,諸如在所界定之數量的多核苷酸上 (例如,約 7 至 22 個核鹼基))。 As used herein, the terms "specifically hybridize" and "specifically bind" refer to a sufficient degree of complementarity between a polynucleotide and a target nucleic acid (e.g., Grik2 mRNA) to induce a desired effect (e.g., decrease or inhibit GluK2 expression from Grik2 mRNA), while showing minimal or no effect on non-target nucleic acids. Specific hybridization or binding can occur under physiological conditions. For example, when the number of nucleobases in a polynucleotide (e.g., an antisense polynucleotide) that is complementary to a nucleobase corresponding to a target nucleic acid (e.g., an mRNA sequence) facilitates the fitting of the polynucleotide to the The target nucleic acid does not fit to the non-target nucleic acid (e.g., complementarity corresponds to, e.g., the percent sequence identity of the binding portion of the polynucleotide to the target nucleic acid is 80% or greater (e.g., 85%, 90 %, 95%, 97%, 99% or 100%)), specific hybridization or binding occurs. Those skilled in the art will understand that in this case, the nucleic acid sequence in the polynucleotide (e.g., antisense oligomer) has a high degree of complementarity (e.g., at least about 80%, 85%) to the nucleic acid sequence in the target nucleic acid. %, 90%, 95%, 97%, 99%, or 100% complementary, such as over a defined number of polynucleotides (eg, about 7 to 22 nucleobases)).
術語「個體」及「患者」指代動物 (例如,哺乳動物,諸如人類)。待根據本文所述方法治療的個體可為已被診斷患有癲癇 (例如,TLE) 之個體,或者處於發展該病症之風險中的個體。可以藉由本領域已知的任何方法或技術進行診斷。待根據本揭露治療的個體可能已經接受了標準測試,或者可能已經在沒有檢查的情況下經鑑定為由於存在與疾病或病症相關之一種或多種風險因素而處於風險中。The terms "individual" and "patient" refer to animals (eg, mammals, such as humans). An individual to be treated according to the methods described herein may be an individual who has been diagnosed with epilepsy (e.g., TLE), or is at risk of developing the condition. Diagnosis can be performed by any method or technique known in the art. Individuals to be treated in accordance with the present disclosure may have undergone standard testing or may have been identified without testing as being at risk due to the presence of one or more risk factors associated with the disease or condition.
術語「顳葉癲癇」或「TLE」指代一種慢性神經系統疾病,其特徵為起源於大腦顳葉的慢性及復發性癲癇發作 (癲癇)。這種疾病不同於天然腦組織中的急性癲癇發作,因為 TLE 之特徵為神經元網路之形態功能重組以及從海馬齒狀迴之顆粒細胞中復發的苔狀纖維萌芽,而天然組織中的急性癲癇發作不會促發這種特定於電路的重組。TLE 可能是由於大腦的一個或兩個半球中出現癲癇病灶。The term "temporal lobe epilepsy" or "TLE" refers to a chronic neurological disorder characterized by chronic and recurrent epileptic seizures (epilepsy) originating in the temporal lobe of the brain. This disease differs from acute epileptic seizures in native brain tissue because TLE is characterized by morphological and functional reorganization of neuronal networks and recurrent mossy fiber sprouting from granule cells in the dentate gyrus of the hippocampus, whereas acute epileptic seizures in native tissue Seizures do not trigger this circuit-specific reorganization. TLE may be due to the development of epileptic lesions in one or both hemispheres of the brain.
術語「轉導作用」及「轉導」指代將核酸材料 (例如載體,諸如病毒載體構建體或其一部分) 引入細胞內並隨後在該細胞內表現由該核酸材料 (例如載體構建體或其一部分) 編碼的多核苷酸的方法。The terms "transduction" and "transduction" refer to the introduction of a nucleic acid material (e.g., a vector, such as a viral vector construct or a portion thereof) into a cell and the subsequent expression within the cell of the nucleic acid material (e.g., a vector construct or a portion thereof). Part) Methods for encoding polynucleotides.
術語「治療」或「處理」指代預防性及防範性治療以及治愈性或疾病改善治療,包括治療有感染疾病風險或疑似已感染疾病的患者,以及治療生病或已經診斷為患有疾病或醫學病症的患者。治療亦包括抑制臨床復發。可向患有醫學疾患或最終可能獲得該疾患的個體投予治療,以便預防、治愈、延遲疾患的發作、降低疾患的嚴重性或改善疾患或複發疾患之一種或多種症狀,或以便延長個體的存活期,使其超過在沒有此類治療的情況下預期的存活期。「治療方案」指代疾病的治療模式,例如治療期間使用的給藥模式。治療方案可包括誘導方案及維持方案。片語「誘導方案」或「誘導期」指代用於疾病之初始治療的治療方案 (或治療方案的一部分)。誘導方案的總體目標為在治療方案之初始階段為患者提供高水平的藥物。誘導方案可以 (部分地或全部) 採用「負荷方案」,這可能包括投予比醫生在維持方案期間使用的藥物更大劑量之藥物,比醫生在維持治療期間投予藥物更頻繁地投予藥物,或兩者兼而有之。短語「維持方案」或「維持期」指代用於在疾病治療期間維持患者的治療方案 (或治療方案的一部分),例如,使患者長期 (數月或數年) 處於緩解狀態。維持方案可以採用連續療法 (例如,定期投予藥物,例如,每週、每月、每年等) 或間歇療法 (例如,中斷治療、間歇治療、在復發時治療或在達到特定的預定標準 (例如,疾病表現) 後治療)。The term "treatment" or "treatment" refers to preventive and preventive treatment as well as curative or disease-modifying treatment, including the treatment of patients who are at risk of or suspected of having contracted a disease, and the treatment of patients who are ill or have been diagnosed with a disease or medical condition of patients. Treatment also includes suppression of clinical relapse. Treatment may be administered to an individual who has a medical condition or is at risk of eventually acquiring the condition in order to prevent, cure, delay the onset of the condition, reduce the severity of the condition, or ameliorate one or more symptoms of the condition or recurrence of the condition, or to prolong the individual's life Survival beyond that expected in the absence of such treatment. "Treatment regimen" refers to the mode of treatment for a disease, such as the mode of administration used during treatment. Treatment options may include induction and maintenance options. The phrase "induction regimen" or "induction period" refers to a treatment regimen (or part of a treatment regimen) used for the initial treatment of a disease. The overall goal of an induction regimen is to provide patients with a high level of medication during the initial stages of the treatment regimen. Induction regimens may (partly or fully) use a "loading regimen," which may include administering higher doses of drugs than what your doctor uses during the maintenance regimen, and giving drugs more frequently than your doctor will give during maintenance therapy. , or both. The phrase "maintenance regimen" or "maintenance phase" refers to a treatment regimen (or part of a treatment regimen) used to maintain a patient during treatment of a disease, e.g., to keep the patient in remission for an extended period of time (months or years). Maintenance regimens may employ continuous therapy (e.g., administration of medication at regular intervals, e.g., weekly, monthly, yearly, etc.) or intermittent therapy (e.g., discontinuation of therapy, intermittent therapy, treatment upon relapse or upon achievement of certain predetermined criteria (e.g., , disease manifestation) post-treatment).
術語「載體」包括核酸載體,例如 DNA 載體,諸如質體、RNA 載體或另一種合適的複制子 (例如病毒載體)。已經開發了多種載體用於將編碼外源性多核苷酸或蛋白質的多核苷酸輸送至原核或真核細胞中。此類表現載體的實例揭示於例如 WO 1994/011026 中;該專利藉由引用併入本文,因為它涉及適合表現目標核酸材料的載體。適用於本文所述的組成物及方法的表現載體含有多核苷酸序列以及例如用於在哺乳動物細胞中表現異源核酸材料 (例如 ASO) 的額外序列元件。可用於表現本文所述的抑制性核酸 (例如,RNA) 劑的某些載體包括含有調節序列的質體,諸如引導基因轉錄的啟動子及增強子區域。用於表現本文所揭示的抑制性核酸 (例如,RNA) 劑的其他有用之載體含有多核苷酸序列,該等多核苷酸序列提高此等多核苷酸的轉譯速率或提高由基因轉錄產生的核酸 (例如,RNA) 之穩定性或核輸出。此等序列元件包括例如 5' 及 3' 非轉譯區域、IRES 以及多腺苷酸化訊息序列位點,以便引導表現載體上攜帶之基因的有效轉錄。適合與本文所述的組成物及方法合用的表現載體亦可含有編碼標記的多核苷酸,用於選擇含有此類載體的細胞。合適之標記的實例為編碼對於抗生素諸如胺苄青黴素、氯黴素、康黴素、諾爾絲菌素 (nourseothricin) 或吉歐黴素之抗性的基因。The term "vector" includes nucleic acid vectors, for example DNA vectors such as plasmids, RNA vectors or another suitable replicon (eg a viral vector). A variety of vectors have been developed for delivering polynucleotides encoding exogenous polynucleotides or proteins into prokaryotic or eukaryotic cells. Examples of such expression vectors are disclosed, for example, in WO 1994/011026; this patent is incorporated herein by reference as it relates to vectors suitable for expressing target nucleic acid material. Expression vectors suitable for use in the compositions and methods described herein contain polynucleotide sequences as well as additional sequence elements, for example, for expression of heterologous nucleic acid materials (e.g., ASOs) in mammalian cells. Certain vectors useful for expressing inhibitory nucleic acid (e.g., RNA) agents described herein include plasmids containing regulatory sequences, such as promoter and enhancer regions that direct gene transcription. Other useful vectors for expressing inhibitory nucleic acid (e.g., RNA) agents disclosed herein contain polynucleotide sequences that increase the rate of translation of such polynucleotides or increase the nucleic acid produced by gene transcription. (e.g., RNA) stability or nuclear export. Such sequence elements include, for example, 5' and 3' untranslated regions, IRES, and polyadenylation message sequence sites in order to direct efficient transcription of the gene carried on the expression vector. Expression vectors suitable for use with the compositions and methods described herein may also contain polynucleotides encoding markers for selection of cells containing such vectors. Examples of suitable markers are genes encoding resistance to antibiotics such as ampicillin, chloramphenicol, commycin, nourseothricin or geomycin.
如本文所用,術語「變體」指代藉由使起始序列 (例如,參考序列) 合理地包括一個或多個 (例如,1、2、3、4、5、6 或 7 個) 核苷酸修飾 (取代、插入、缺失或錯配) 而獲得的本揭露之抑制性多核苷酸序列或其補體 (例如,其基本上的或完全的補體)。此類修飾可以改善多核苷酸的至少一個特徵 (例如,生物學功能) (例如,增強引導股的 RISC 裝載或保留,降低隨從股的 RISC 裝載或保留,或增加引導與股產生的比率,以及增強對標靶核酸序列的抑制)。As used herein, the term "variant" refers to a sequence modified by a starting sequence (e.g., a reference sequence) that reasonably includes one or more (e.g., 1, 2, 3, 4, 5, 6, or 7) nucleosides. The inhibitory polynucleotide sequence of the present disclosure or its complement (eg, its substantial or complete complement) obtained by acid modification (substitution, insertion, deletion or mismatch). Such modifications may improve at least one characteristic (e.g., biological function) of the polynucleotide (e.g., enhance RISC loading or retention of the leader strand, decrease RISC loading or retention of the follower strand, or increase the ratio of leader to strand production, and Enhance inhibition of target nucleic acid sequences).
序列表sequence list
本申請包含序列表,該序列表已經以 ASCII 格式以電子方式提交,並以引用方式以其全部內容併入本文。該 ASCII 複本創建於 2022 年 4 月 28 日,命名為「51460-007WO3_Sequence_Listing_4_28_22_ST25」,且大小為 297,127 位元組。 This application contains a sequence listing, which has been submitted electronically in ASCII format and is incorporated herein by reference in its entirety. The ASCII copy was created on April 28, 2022, named "51460-007WO3_Sequence_Listing_4_28_22_ST25", and has a size of 297,127 bytes.
本文描述使用具有修飾之抑制性多核苷酸 (例如,編碼抑制性 RNA 劑的多核苷酸) 來治療個體 (諸如哺乳動物個體,例如人類) 之癲癇,諸如顳葉癲癇 (TLE;例如,治療難治性 TLE) 的組成物和方法,該等修飾經設計為影響 (例如,增強) RNA 誘導型緘默化複合體 (RISC) 加載,並且例如提升反義引導股之產生並最小化隨從股之產生,從而促進更大程度的 Grik2mRNA 及 GluK2 表現之敲低並且降低隨從股誘導的脫靶效應及毒性之潛在風險。例如,可以例如根據本文所述的方法投予治療有效量之靶向由麩胺酸促離子型受體紅藻氨酸類型次單元 2 ( Grik2) 基因編碼的 mRNA 的抑制性 RNA 分子 (例如,反義寡核苷酸 (ASO)、shRNA、siRNA、shmiRNA 或編碼它們的核酸載體,諸如彼等本文所述者),以治療有此需要的個體 (例如,人類) 之癲癇。本文亦描述組成物,該等組成物含有編碼靶向 Grik2mRNA 的抑制性 RNA 劑的核酸載體 (例如,病毒載體,諸如腺相關病毒 (AAV) 載體),用於治療 TLE。 Grik2 Described herein is the use of inhibitory polynucleotides with modifications (e.g., polynucleotides encoding inhibitory RNA agents) to treat epilepsy, such as temporal lobe epilepsy (TLE; e.g., treatment refractory) in an individual (such as a mammalian individual, e.g., a human) (e.g., enhance) RNA-induced silencing complex (RISC) loading, and, e.g., enhance the production of antisense leader strands and minimize the production of follower strands, This promotes greater knockdown of Grik2 mRNA and GluK2 expression and reduces the potential risk of follower-induced off-target effects and toxicity. For example, a therapeutically effective amount of an inhibitory RNA molecule targeting the mRNA encoded by the glutamate ionotropic receptor kainate type subunit 2 ( Grik2 ) gene (e.g., Antisense oligonucleotides (ASOs), shRNA, siRNA, shmiRNA, or nucleic acid vectors encoding them, such as those described herein), to treat epilepsy in individuals (eg, humans) in need thereof. Also described herein are compositions containing nucleic acid vectors (eg, viral vectors, such as adeno-associated virus (AAV) vectors) encoding inhibitory RNA agents that target Grik2 mRNA for use in the treatment of TLE. Grik2
Grik2為一種編碼促離子型麩胺酸受體次單元 GluK2 的基因,它由內源性促效劑麩胺酸活化,亦可由促效劑紅藻氨酸選擇性地活化。含有 GluK2 的紅藻氨酸受體 (KAR) 與其他促離子型麩胺酸受體一樣,藉由麩胺酸表現出快速配體門控,其藉由打開可滲透鈉及鉀的陽離子通道孔來發揮作用。KAR 複合體可以由多個次單元組裝成 KAR 次單元之異聚物或同聚物組裝體。此類受體的特徵為共同形成配體結合域的細胞外 N 末端及大肽環,以及細胞內 C 末端。促離子型麩胺酸受體複合體本身充當配體門控離子通道,且在結合麩胺酸後介導帶電離子穿過神經元膜。通常,KAR 為 GluK1、GluK2 及/或 GluK3 (以前分別命名為 GluR5、GluR6 及 GluR7)、GluK4 (KA1) 及 GluK5 (KA2) 次單元的多聚組裝體 (Collingridge, Neuropharmacology.2009 Jan;56(1):2-5)。KAR 複合體中涉及的各種次單元組合通常由編碼特定 KAR 次單元的 mRNA 之 RNA 剪接及/或 RNA 編輯 (例如,腺苷脫胺酶將腺苷轉化為肌苷) 決定。此外,此類 RNA 修飾可能會影響受體之特性,例如,改變通道的鈣滲透性。已知紅藻氨酸受體活性之增加是致癲癇的。含有 GluK2 的 KAR 為調節促離子型麩胺酸受體活性並隨後改善與癲癇發生相關之症狀的合適標靶 (Peret 等人,2014)。 顳葉癲癇 Grik2 is a gene encoding the ionotropic glutamate receptor subunit GluK2, which is activated by the endogenous agonist glutamate and can also be selectively activated by the agonist kainic acid. GluK2-containing kainate receptors (KAR), like other ionotropic glutamate receptors, exhibit rapid ligand gating by glutamate by opening cation channel pores permeable to sodium and potassium to play a role. The KAR complex can be assembled from multiple subunits into heteropolymer or homopolymer assemblies of KAR subunits. This class of receptors is characterized by an extracellular N-terminus and a large peptide loop that together form the ligand-binding domain, and an intracellular C-terminus. The ionotropic glutamate receptor complex itself acts as a ligand-gated ion channel and upon binding glutamate mediates the passage of charged ions across neuronal membranes. Typically, KARs are multimeric assemblies of GluK1, GluK2, and/or GluK3 (previously named GluR5, GluR6, and GluR7, respectively), GluK4 (KA1), and GluK5 (KA2) subunits (Collingridge, Neuropharmacology. 2009 Jan; 56 (1 ):2-5). The various combinations of subunits involved in the KAR complex are typically determined by RNA splicing and/or RNA editing of the mRNA encoding a specific KAR subunit (eg, adenosine deaminase converts adenosine to inosine). Furthermore, such RNA modifications may affect receptor properties, for example, altering the calcium permeability of the channel. Increased kainate receptor activity is known to be epileptogenic. GluK2-containing KARs are suitable targets to modulate ionotropic glutamate receptor activity and subsequently improve symptoms associated with epileptogenesis (Peret et al., 2014). temporal lobe epilepsy
癲癇發生為導致癲癇確立的過程,並且它可能在細胞、分子及形態學變化導致病理性神經元網路重組發生時出現潛伏。根據致癇灶之解剖學起源,TLE 經表征為兩種主要類型。起源於內側顳葉 (例如,海馬迴、海馬旁迴、海馬下腳及杏仁核等) 的 TLE 命名為內側 TLE (mTLE),而起源於外側顳葉 (例如,顳葉新皮質) 的 TLE 稱為外側 TLE (lTLE)。TLE 的其他特徵可能包括海馬迴之 CA1、CA3、齒狀門及齒狀迴 (DG) 區域內的神經元細胞死亡;GABA 逆轉電位的逆轉;DG 中的顆粒細胞 (GC) 分散;以及復發性 GC 苔狀纖維之萌芽,其導致在齒狀 GC 上形成病理生理學復發性興奮性突觸 (rMF-DGC 突觸)。Epileptogenesis is the process that leads to the establishment of epilepsy, and it may be latent when cellular, molecular, and morphological changes lead to the occurrence of pathological neuronal network reorganization. TLE has been characterized into two main types based on the anatomical origin of the epileptogenic zone. TLEs that originate from the medial temporal lobe (e.g., hippocampal gyrus, parahippocampal gyrus, inferior hippocampal peduncle, amygdala, etc.) are named medial TLE (mTLE), while TLEs that originate from the lateral temporal lobe (e.g., temporal neocortex) are named Lateral TLE (lTLE). Other features of TLE may include neuronal cell death in the CA1, CA3, dentate hilus, and dentate gyrus (DG) regions of the hippocampus; reversal of GABA reversal potential; granule cell (GC) dispersion in the DG; and recurrent Sprouting of GC mossy fibers that lead to the formation of pathophysiological recurrent excitatory synapses (rMF-DGC synapses) on dentate GCs.
多種致病因素促進 TLE 的病因學,包括內側顳葉硬化、創傷性腦損傷、腦部感染 (例如,腦炎及腦膜炎)、缺氧性腦損傷、中風、腦腫瘤、遺傳性綜合症狀及熱性驚厥。由於 CNS 之可塑性取決於發育狀態及大腦區域特異性易感性兩者,因此並非全部具有腦損傷之個體皆發展為癲癇。海馬迴,包括 DG,已被鑑定為特別容易受到損傷而導致 TLE 的大腦區域,並且在一些情況下,與治療抗性 (亦即,難治性) 癲癇有關 (Jarero-Basulto, J.J., 等人Pharmaceuticals, 2018, 11, 17; doi:10.3390/ph11010017)。興奮性麩胺酸能傳訊的放大可能促進自發性癲癇發作 (Kuruba, 等人 Epilepsy Behav. 2009, 14 (Suppl. 1), 65-73)。Multiple causative factors contribute to the etiology of TLE, including mesial temporal lobe sclerosis, traumatic brain injury, brain infections (eg, encephalitis and meningitis), anoxic brain injury, stroke, brain tumors, genetic syndromes, and Febrile convulsions. Because CNS plasticity depends on both developmental status and brain region-specific susceptibility, not all individuals with brain damage develop epilepsy. The hippocampus, including the DG, has been identified as a brain region particularly susceptible to damage leading to TLE and, in some cases, has been implicated in treatment-resistant (i.e., refractory) epilepsy (Jarero-Basulto, J.J., et al. Pharmaceuticals , 2018, 11, 17; doi:10.3390/ph11010017). Amplification of excitatory glutamatergic signaling may contribute to spontaneous epileptic seizures (Kuruba, et al. Epilepsy Behav. 2009, 14 (Suppl. 1), 65-73).
不希望受理論的束縛,經由含有異位 GluK2 的 KAR 起作用的異常 rMF-DGC 突觸 (Epsztein 等人,2005;Artinian 等人,2011, 2015) 可能在 TLE 之慢性癲癇發作中發揮關鍵作用 (Peret 等人,2014)。例如,在缺乏 GluK2 受體次單元的基因轉殖小鼠中或在抑制 GluK2/GluK5 受體的藥理學藥劑存在下,發作間期棘波及發作事件 (亦即,癲癇狀大腦活動的電生理學特徵) 降低 (Peret 等人,2014;Crépel 與 Mulle,2015)。雖然在旨在檢驗此等理論的基因轉殖動物模型中將 GluK2 敲低或緘默化是可行的,但設計一種對 GluK2 次單元具有選擇性且可安全用於人類的抑制劑具有挑戰性。GluK 次單元在結構上為保留式的,且其等之 DNA 編碼序列共享顯著之同源性。大腦中關於同源及異源促離子型及代謝型麩胺酸受體的複雜基因表現模式進一步使任何治療策略複雜化。本文所揭示的方法及組成物適用於藉由靶向 Grik2mRNA 並減少 (例如,敲低) 含有 GluK2 的 KAR 在神經元或星狀細胞中的表現來治療 TLE (例如,mTLE 或 lLTE),這促進例如神經元迴路 (例如,海馬迴路) 中自發性癲癇狀放電的降低。因此,本文所述的組成物及方法靶向疾病的生理原因並可用於療法中。 靶向 Grik2mRNA 的抑制性多核苷酸 Without wishing to be bound by theory, abnormal rMF-DGC synapses acting via KARs containing ectopic GluK2 (Epsztein et al., 2005; Artinian et al., 2011, 2015) may play a key role in chronic seizures in TLE ( Peret et al., 2014). For example, in transgenic mice lacking the GluK2 receptor subunit or in the presence of pharmacological agents that inhibit GluK2/GluK5 receptors, interictal spikes and ictal events (i.e., electrophysiology of epileptiform brain activity characteristics) (Peret et al., 2014; Crépel and Mulle, 2015). Although it is feasible to knock down or silence GluK2 in transgenic animal models designed to test these theories, designing an inhibitor that is selective for the GluK2 subunit and safe for use in humans is challenging. GluK subunits are structurally conserved, and their DNA coding sequences share significant homology. The complex pattern of gene expression in the brain for homologous and heterologous ionotropic and metabotropic glutamate receptors further complicates any therapeutic strategy. The methods and compositions disclosed herein are suitable for treating TLE (e.g., mTLE or lLTE) by targeting Grik2 mRNA and reducing (e.g., knocking down) the expression of GluK2-containing KARs in neurons or stellate cells. Promotes, for example, the reduction of spontaneous epileptiform discharges in neuronal circuits (eg, hippocampal circuits). Accordingly, the compositions and methods described herein target the physiological causes of disease and can be used in therapy. Inhibitory polynucleotides targeting Grik2 mRNA
TLE 的臨床管理非常困難,其中至少三分之一的 TLE 患者無法使用現有藥物充分控制衰弱性癲癇發作。此等患者經常經歷難以治療的複發性癲癇發作。在此類情況下,TLE 患者可採取侵入性及不可逆的手術切除顳葉中之致癲癇病灶,這可導致不必要的認知缺陷。因此,很大一部分 TLE 患者需要新的治療途徑來治療耐藥性 TLE。本文所述的組成物及方法提供治療導致 TLE 發展及進展的潛在分子病理生理學的益處。Clinical management of TLE is difficult, with at least one-third of TLE patients unable to adequately control debilitating seizures with existing medications. Such patients often experience recurrent epileptic seizures that are difficult to treat. In such cases, TLE patients may undergo invasive and irreversible surgery to remove epileptogenic lesions in the temporal lobes, which may lead to unnecessary cognitive deficits. Therefore, a large proportion of TLE patients require new therapeutic avenues to treat drug-resistant TLE. The compositions and methods described herein provide the benefit of treating the underlying molecular pathophysiology that contributes to the development and progression of TLE.
本文所述的組成物為編碼抑制性核酸構建體的多核苷酸 (例如,抑制性 RNA 劑或編碼其的核酸載體),該等多核苷酸靶向 Grik2mRNA (例如,以下中之任一者:SEQ ID NO: 164 至 SEQ ID NO: 174),可以根據本文所述的方法投予該等組成物以治療癲癇,諸如 TLE。本文所述的方法及組成物可用於治療患有任何類型之 TLE (例如,伴有局灶性癲癇發作的 TLE、伴全身性癲癇發作的 TLE、mTLE 或 lTLE) 的 TLE 患者。此外,當前所揭示的方法及組成物可用於治療由任何病因引起的 TLE,諸如內側顳葉硬化、創傷性腦損傷、腦部感染 (例如,腦炎及腦膜炎)、缺氧性腦損傷、中風、腦腫瘤、遺傳性綜合症狀或熱性驚厥。本文所述的組成物及方法亦可作為預防性治療向有發展為 TLE 風險之個體投予,例如,處於 TLE 進展潛伏期的個體。 The compositions described herein are polynucleotides encoding inhibitory nucleic acid constructs (e.g., inhibitory RNA agents or nucleic acid vectors encoding the same) that target Grik2 mRNA (e.g., any of : SEQ ID NO: 164 to SEQ ID NO: 174), such compositions may be administered according to the methods described herein to treat epilepsy, such as TLE. The methods and compositions described herein can be used to treat TLE patients with any type of TLE (eg, TLE with focal seizures, TLE with generalized seizures, mTLE, or lTLE). Additionally, the presently disclosed methods and compositions may be used to treat TLE due to any etiology, such as mesial temporal lobe sclerosis, traumatic brain injury, brain infections (e.g., encephalitis and meningitis), anoxic brain injury, Stroke, brain tumors, genetic syndromes, or febrile seizures. The compositions and methods described herein may also be administered as preventive treatment to individuals at risk of developing TLE, eg, individuals in the latent phase of TLE progression.
根據本文所揭示的方法及組成物,抑制性核酸(例如,抑制性 RNA 劑) 可以藉由引起細胞 (例如,神經元,諸如海馬神經元,諸如齒狀迴之海馬神經元,例如齒狀顆粒細胞 (DGC) 或麩胺酸能錐狀神經元) 中 Grik2mRNA 之降解來抑制 GluK2 之表現,從而阻止 mRNA 轉譯為功能性 GluK2 蛋白。 According to the methods and compositions disclosed herein, inhibitory nucleic acids (e.g., inhibitory RNA agents) can be produced by causing cells (e.g., neurons, such as hippocampal neurons, such as hippocampal neurons of the dentate gyrus, such as dentate granules) to Degradation of Grik2 mRNA in glutamatergic cells (DGCs) or glutamatergic pyramidal neurons) inhibits the expression of GluK2, thereby preventing the translation of the mRNA into functional GluK2 protein.
本文所揭示的靶向 Grik2mRNA 的抑制性核酸分子 (例如,抑制性 RNA 劑) 可用於減少在一種或多種腦區域中的癲癇性腦活動 (例如,癲癇狀放電) 之發生頻率或完全抑制癲癇性腦活動之發生。此類腦區域可以包括但不限於內側顳葉、外側顳葉、額葉,或更具體地,海馬迴 (例如,DG、CA1、CA2、CA3、下腳) 或新皮質。由於含有 GluK2 的 KAR 在 DG 之 rMF-DGC 中的異常表現,DG 中的癲癇性腦活動之發生可能受到抑制。 The inhibitory nucleic acid molecules (eg, inhibitory RNA agents) targeting Grik2 mRNA disclosed herein can be used to reduce the frequency of epileptic brain activity (eg, epileptiform discharges) in one or more brain regions or to completely suppress epilepsy. The occurrence of sexual brain activity. Such brain regions may include, but are not limited to, the medial temporal lobe, lateral temporal lobe, frontal lobe, or more specifically, the hippocampus (eg, DG, CA1, CA2, CA3, inferior peduncle) or neocortex. Due to the abnormal expression of GluK2-containing KARs in rMF-DGCs in the DG, the occurrence of epileptic brain activity in the DG may be inhibited.
據此,本揭露提供藉由使 CNS 細胞 (例如,DGC) 與有效量之抑制性核酸分子 (例如,抑制性 RNA 劑) 或編碼該抑制性核酸分子的核酸載體接觸來降低該細胞中之癲癇狀放電的方法及組成物,該抑制性核酸分子與以下中之任一者具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 之外SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 226 至 229 以及 SEQ ID NO: 238 至 SEQ ID NO: 241,該核酸載體諸如與 SEQ ID NO: 256 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的核酸載體。在一些實施例中,該核酸分子包括:從 5' 到 3',miR-30 引導序列,其與 SEQ ID NO: 19 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如, 100%)) 序列同一性;miR-30 莖環序列,其與 SEQ ID NO: 4 具有至少 85% 序列同一性;以及miR-30 隨從序列,其與 SEQ ID NO: 34 具有至少 85% 同一性。在一些實施例中,核酸分子包括:從 5' 到 3',miR-30 引導序列,其與 SEQ ID NO: 19 具有核酸序列同一性;miR-30 莖環序列,其具有 SEQ ID NO: 4 之核酸序列;以及 miR-30 隨從序列,其具有SEQ ID NO: 34 之核酸序列。在一些實施例中,核酸分子包括:從 5' 到 3',與 SEQ ID NO: 4 具有至少 85% 序列同一性的核酸序列。在一些實施例中,核酸分子包括:從 5' 到 3',SEQ ID NO: 4 之核酸序列。在一些實施例中,該核酸分子包括:從 5' 到 3',miR-218-1 引導序列,其與 SEQ ID NO: 141 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如, 100%)) 序列同一性;miR-218-1 莖環序列,其與 SEQ ID NO: 135 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;以及 miR-218-1 隨從序列,其與 SEQ ID NO: 147 具有至少 85% 序列同一性。在一些實施例中,核酸分子包括:從 5' 到 3',miR-218-1 引導序列,其具有 SEQ ID NO: 141 之核酸序列;miR-218-1 莖環序列,其具有 SEQ ID NO: 135 之核酸序列;以及 miR-218-1 隨從序列,其具有 SEQ ID NO: 147 之核酸序列。在一些實施例中,該核酸分子包括:從 5' 到 3',核酸序列,其與 SEQ ID NO: 135 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如, 100%)) 序列同一性。在一些實施例中,核酸分子包括:從 5' 到 3',SEQ ID NO: 135。Accordingly, the present disclosure provides methods for reducing epilepsy in CNS cells (e.g., DGCs) by contacting the cells with an effective amount of an inhibitory nucleic acid molecule (e.g., an inhibitory RNA agent) or a nucleic acid vector encoding the inhibitory nucleic acid molecule. Methods and compositions for discharge, the inhibitory nucleic acid molecule having at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more Multiple (e.g., 100%)) sequence identity: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 except SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 226 to 229, and SEQ ID NO: 238 to SEQ ID NO: 241, the nucleic acid vector, such as SEQ ID NO: 256, has at least 85% (e.g., at least 85 %, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the nucleic acid molecule includes: from 5' to 3', a miR-30 guide sequence that is at least 85% (e.g., at least 85%, 90%, 95%, 96%) identical to SEQ ID NO: 19 , 97%, 98%, 99% or more (e.g., 100%)) sequence identity; a miR-30 stem-loop sequence that has at least 85% sequence identity with SEQ ID NO: 4; and a miR-30 follower A sequence that is at least 85% identical to SEQ ID NO: 34. In some embodiments, the nucleic acid molecule includes: from 5' to 3', a miR-30 leader sequence having nucleic acid sequence identity with SEQ ID NO: 19; a miR-30 stem-loop sequence having SEQ ID NO: 4 The nucleic acid sequence of SEQ ID NO: 34; and the miR-30 follower sequence, which has the nucleic acid sequence of SEQ ID NO: 34. In some embodiments, the nucleic acid molecule includes: a nucleic acid sequence having at least 85% sequence identity from 5' to 3' to SEQ ID NO: 4. In some embodiments, the nucleic acid molecule includes: from 5' to 3', the nucleic acid sequence of SEQ ID NO: 4. In some embodiments, the nucleic acid molecule includes: from 5' to 3', a miR-218-1 guide sequence that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; a miR-218-1 stem-loop sequence that is at least 85% (e.g., at least 85%) identical to SEQ ID NO: 135 %, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; and a miR-218-1 follower sequence having SEQ ID NO: 147 At least 85% sequence identity. In some embodiments, the nucleic acid molecule includes: from 5' to 3', a miR-218-1 guide sequence, which has the nucleic acid sequence of SEQ ID NO: 141; a miR-218-1 stem loop sequence, which has the SEQ ID NO : the nucleic acid sequence of SEQ ID NO: 135; and the miR-218-1 follower sequence, which has the nucleic acid sequence of SEQ ID NO: 147. In some embodiments, the nucleic acid molecule includes: from 5' to 3', a nucleic acid sequence that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%) identical to SEQ ID NO: 135 , 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the nucleic acid molecule includes: from 5' to 3', SEQ ID NO: 135.
在一些實施例中,該核酸分子包括:從 5' 到 3',(a) miR-30 序列引導序列,其與 SEQ ID NO: 19 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如, 100%)) 序列同一性;miR-30 莖環序列,其與 SEQ ID NO: 4 具有至少 85% 序列同一性;及 miR-30 隨從序列,其與 SEQ ID NO: 34 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 同一性;及 (b) miR-218-1 引導序列,其與 SEQ ID NO: 141 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;miR-218-1 莖環序列,其與 SEQ ID NO: 135 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;及 miR-218-1 隨從序列,其與 SEQ ID NO: 147 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,核酸分子包括:從 5' 到 3',(a) miR-30 序列引導序列,其具有 SEQ ID NO: 19 之序列;miR-30 莖環序列,其具有 SEQ ID NO: 4 之序列;以及 miR-30 隨從序列,其具有 SEQ ID NO: 34 之序列;及 (b) miR-218-1 引導序列,其具有 SEQ ID NO: 141 之序列;miR-218-1 莖環序列,其具有 SEQ ID NO: 135 之序列;及 miR-218-1 隨從序列,其具有 SEQ ID NO: 147 之序列。在一些實施例中,該核酸分子包括核酸序列,該核酸序列與 SEQ ID NO: 258 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如, 100%)) 序列同一性。在一些實施例中,該核酸分子包括 SEQ ID NO: 258 之核酸序列。In some embodiments, the nucleic acid molecule includes: from 5' to 3', (a) a miR-30 sequence guide sequence that is at least 85% (e.g., at least 85%, 90%, 95%) identical to SEQ ID NO: 19 %, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; a miR-30 stem-loop sequence that has at least 85% sequence identity with SEQ ID NO: 4; and A miR-30 companion sequence that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%) identical to SEQ ID NO: 34 ) identity; and (b) a miR-218-1 guide sequence that is at least 85% identical to SEQ ID NO: 141 (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99 % or more (e.g., 100%)) sequence identity; a miR-218-1 stem-loop sequence that has at least 85% (e.g., at least 85%, 90%, 95%, 96%) with SEQ ID NO: 135 , 97%, 98%, 99% or more (e.g., 100%)) sequence identity; and a miR-218-1 follower sequence that has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the nucleic acid molecule includes: from 5' to 3', (a) a miR-30 sequence leader sequence, which has the sequence of SEQ ID NO: 19; a miR-30 stem-loop sequence, which has the sequence of SEQ ID NO: The sequence of 4; and the miR-30 follower sequence, which has the sequence of SEQ ID NO: 34; and (b) the miR-218-1 leader sequence, which has the sequence of SEQ ID NO: 141; the miR-218-1 stem-loop The sequence, which has the sequence of SEQ ID NO: 135; and the miR-218-1 satellite sequence, which has the sequence of SEQ ID NO: 147. In some embodiments, the nucleic acid molecule includes a nucleic acid sequence that is at least 85% identical to SEQ ID NO: 258 (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the nucleic acid molecule includes the nucleic acid sequence of SEQ ID NO: 258.
在一些實施例中,該核酸分子包括:從 5' 到 3',(a) hSyn 啟動子序列,其與以下中之任一者具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 194 至 SEQ ID NO: 198,(b) miR-30 序列引導序列,其與 SEQ ID NO: 19 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;miR-30莖環序列,其與 SEQ ID NO: 4 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;及 miR-218-30 隨從序列,其與 SEQ ID NO: 34 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 同一性;及 (c) miR-218-1 引導序列,其與 SEQ ID NO: 141 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;miR-218-1 莖環序列,其與 SEQ ID NO: 135 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;及 miR-218-1 隨從序列,其與 SEQ ID NO: 147 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,該核酸分子包括:從 5' 到 3',(a) hSyn 啟動子序列,其與 SEQ ID NO: 198 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性,(b) miR-30 序列引導序列,其與 SEQ ID NO: 19 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;miR-30莖環序列,其與 SEQ ID NO: 4 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;4 之序列;及 miR-30 隨從序列,其與 SEQ ID NO: 34 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 同一性;及 (c) miR-218-1 引導序列,其與 SEQ ID NO: 141 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;miR-218-1 莖環序列,其與 SEQ ID NO: 135 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;及 miR-218-1 隨從序列,其與 SEQ ID NO: 147 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,核酸分子包括:從 5' 到 3',(a) hSyn 啟動子序列,其具有 SEQ ID NO: 198 之序列;(b) miR-30 序列引導序列,其具有 SEQ ID NO: 19 之序列;miR-30 莖環序列,其具有 SEQ ID NO: 4 之序列;以及 miR-30 隨從序列,其具有 SEQ ID NO: 34 之序列;及 (c) miR-218-1 引導序列,其具有 SEQ ID NO: 141 之序列;miR-218-1 莖環序列,其具有 SEQ ID NO: 135 之序列;及 miR-218-1 隨從序列,其具有 SEQ ID NO: 147 之序列。在一些實施例中,該核酸分子包括核酸序列,該核酸序列與 SEQ ID NO: 259 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如, 100%)) 序列同一性。在一些實施例中,該核酸分子包括 SEQ ID NO: 259 之核酸序列。In some embodiments, the nucleic acid molecule includes: from 5' to 3', (a) an hSyn promoter sequence that is at least 85% identical to any of the following (e.g., at least 85%, 90%, 95% , 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity: SEQ ID NO: 194 to SEQ ID NO: 198, (b) miR-30 sequence guide sequence, which is identical to SEQ ID NO: 19 has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) sequence identity; miR-30 A stem-loop sequence that has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) sequence with SEQ ID NO: 4 Identity; and a miR-218-30 satellite sequence that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more) to SEQ ID NO: 34 (e.g., 100%)) identity; and (c) a miR-218-1 guide sequence that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97) identical to SEQ ID NO: 141 %, 98%, 99% or more (e.g., 100%)) sequence identity; a miR-218-1 stem-loop sequence that has at least 85% (e.g., at least 85%, 90%) with SEQ ID NO: 135 , 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; and a miR-218-1 follower sequence that has at least 85% ( For example, at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the nucleic acid molecule includes: from 5' to 3', (a) an hSyn promoter sequence that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity, (b) a miR-30 sequence guide sequence that has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; a miR-30 stem-loop sequence that has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) sequence identity; sequence of 4; and miR-30 follower sequence , which is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to SEQ ID NO: 34; and (c) A miR-218-1 leader sequence that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more () identical to SEQ ID NO: 141 For example, 100%)) sequence identity; a miR-218-1 stem-loop sequence that has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98) with SEQ ID NO: 135 %, 99% or more (e.g., 100%)) sequence identity; and a miR-218-1 follower sequence that has at least 85% (e.g., at least 85%, 90%, 95%) with SEQ ID NO: 147 , 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the nucleic acid molecule includes: from 5' to 3', (a) hSyn promoter sequence, which has the sequence of SEQ ID NO: 198; (b) miR-30 sequence guide sequence, which has the sequence of SEQ ID NO : the sequence of 19; the miR-30 stem-loop sequence, which has the sequence of SEQ ID NO: 4; and the miR-30 follower sequence, which has the sequence of SEQ ID NO: 34; and (c) the miR-218-1 guide sequence , which has the sequence of SEQ ID NO: 141; the miR-218-1 stem-loop sequence, which has the sequence of SEQ ID NO: 135; and the miR-218-1 follower sequence, which has the sequence of SEQ ID NO: 147. In some embodiments, the nucleic acid molecule includes a nucleic acid sequence that is at least 85% identical to SEQ ID NO: 259 (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the nucleic acid molecule includes the nucleic acid sequence of SEQ ID NO: 259.
在本文所述的任何以下核酸分子之一些實施例中,核酸分子可包括單個啟動子,其可控制一個或多個 (例如,兩個) miRNA 序列之表現,或兩個啟動子,其各自可控制單個 miRNA 構建體之表現。例如,在一些實施例中,核酸分子包括:從 5' 到 3',(a) 啟動子序列;(b) miRNA 序列,諸如 miR-30 序列,包括 miR-30 引導序列、miR-30 莖環序列及 miR-30 隨從序列;(c) 視情況,第二啟動子序列;及 (d) 第二 miRNA 序列,諸如 miR-218 序列,包括 miR-218-1 引導序列、miR-218-1 莖環序列及 miR-218-1 隨從序列。在一些實施例中,核酸分子包括:從 5' 到 3',(a) 啟動子序列;(b) miRNA 序列,諸如 miR-30 序列,包括 miR-30 引導序列、miR-30 莖環序列及 miR-30 隨從序列;及 (c) 第二 miRNA 序列,諸如 miR-218 序列,包括 miR-218-1 引導序列、miR-218-1 莖環序列及 miR-218-1 隨從序列。在一些實施例中,核酸分子包括:從 5' 到 3',(a) 啟動子序列;(b) miRNA 序列,諸如 miR-30 序列,包括 miR-30 引導序列、miR-30 莖環序列及 miR-30 隨從序列;(c) 第二啟動子序列;及 (d) 第二 miRNA 序列,諸如 miR-218 序列,包括 miR-218-1 引導序列、miR-218-1 莖環序列及 miR-218-1 隨從序列。In some embodiments of any of the following nucleic acid molecules described herein, the nucleic acid molecule can include a single promoter that can control the expression of one or more (e.g., two) miRNA sequences, or two promoters that can each control the expression of one or more (e.g., two) miRNA sequences. Controlling the performance of individual miRNA constructs. For example, in some embodiments, the nucleic acid molecule includes: from 5' to 3', (a) a promoter sequence; (b) a miRNA sequence, such as a miR-30 sequence, including a miR-30 guide sequence, a miR-30 stem loop sequence and the miR-30 follower sequence; (c) optionally, the second promoter sequence; and (d) the second miRNA sequence, such as the miR-218 sequence, including the miR-218-1 leader sequence, miR-218-1 stem Loop sequence and miR-218-1 follower sequence. In some embodiments, the nucleic acid molecule includes: from 5' to 3', (a) a promoter sequence; (b) a miRNA sequence, such as a miR-30 sequence, including a miR-30 leader sequence, a miR-30 stem-loop sequence, and a miR-30 follower sequence; and (c) a second miRNA sequence, such as a miR-218 sequence, including a miR-218-1 leader sequence, a miR-218-1 stem-loop sequence, and a miR-218-1 follower sequence. In some embodiments, the nucleic acid molecule includes: from 5' to 3', (a) a promoter sequence; (b) a miRNA sequence, such as a miR-30 sequence, including a miR-30 leader sequence, a miR-30 stem-loop sequence, and The miR-30 follower sequence; (c) the second promoter sequence; and (d) the second miRNA sequence, such as the miR-218 sequence, including the miR-218-1 leader sequence, the miR-218-1 stem-loop sequence and the miR- 218-1 Follower sequence.
在一些實施例中,該核酸分子包括:從 5' 到 3',(a) hSyn 啟動子序列,其與以下中之任一者具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 194 至 SEQ ID NO: 198,(b) miR-30 序列引導序列,其與 SEQ ID NO: 19 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;miR-30莖環序列,其與 SEQ ID NO: 4 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;4 之序列;及 miR-30 隨從序列,其與 SEQ ID NO: 34 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 同一性;(c) miR-218-1 引導序列,其與 SEQ ID NO: 141 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;miR-218-1 莖環序列,其與 SEQ ID NO: 135 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;及 miR-218-1 隨從序列,其與 SEQ ID NO: 147 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;及 (d) 兔 β-珠蛋白 (RBG) 多腺苷酸化 (polyA) 訊息序列與以下中之一者或多者 (例如,兩者、三者、四者或五者) 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99 % 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 213、SEQ ID NO: 214 及 SEQ ID NO: 215。在一些實施例中,該核酸分子包括:從 5' 到 3',(a) hSyn 啟動子序列,其與 SEQ ID NO: 198 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性,(b) miR-30 序列引導序列,其與 SEQ ID NO: 19 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;miR-30莖環序列,其與 SEQ ID NO: 4 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;4 之序列;及 miR-30 隨從序列,其與 SEQ ID NO: 34 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 同一性;(c) miR-218-1 引導序列,其與 SEQ ID NO: 141 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;miR-218-1 莖環序列,其與 SEQ ID NO: 135 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;及 miR-218-1 隨從序列,其與 SEQ ID NO: 147 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;及 (d) RBG 多腺苷酸化訊息序列與以下中之一者或多者 (例如,兩者、三者、四者或五者) 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99 % 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 213、SEQ ID NO: 214 及 SEQ ID NO: 215。在一些實施例中,核酸分子包括:從 5' 到 3',(a) hSyn 啟動子序列,其具有 SEQ ID NO: 198 之序列;(b) miR-30 序列引導序列,其具有 SEQ ID NO: 19 之序列;miR-30 莖環序列,其具有 SEQ ID NO: 4 之序列;以及 miR-30 隨從序列,其具有 SEQ ID NO: 34 之序列;(c) miR-218-1 引導序列,其具有 SEQ ID NO: 141 之序列;miR-218-1 莖環序列,其具有 SEQ ID NO: 135 之序列;及 miR-218-1 隨從序列,其具有 SEQ ID NO: 147 之序列;及 (d) RBG 多腺苷酸化訊息序列,其具有以下中之任一者的序列:SEQ ID NO: 213、SEQ ID NO: 214 及 SEQ ID NO: 215。在一些實施例中,該核酸分子包括核酸序列,該核酸序列與 SEQ ID NO: 260 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如, 100%)) 序列同一性。在一些實施例中,該核酸分子包括 SEQ ID NO: 260 之核酸序列。In some embodiments, the nucleic acid molecule includes: from 5' to 3', (a) an hSyn promoter sequence that is at least 85% identical to any of the following (e.g., at least 85%, 90%, 95% , 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity: SEQ ID NO: 194 to SEQ ID NO: 198, (b) miR-30 sequence guide sequence, which is identical to SEQ ID NO: 19 has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) sequence identity; miR-30 A stem-loop sequence that has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) sequence with SEQ ID NO: 4 Identity; a sequence of 4; and a miR-30 follower sequence that is at least 85% identical to SEQ ID NO: 34 (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) identity; (c) a miR-218-1 guide sequence that has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; a miR-218-1 stem-loop sequence that has at least 85% (e.g., at least 85%, 90%) with SEQ ID NO: 135 %, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; and a miR-218-1 follower sequence that is at least 85% identical to SEQ ID NO: 147 (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) sequence identity; and (d) Rabbit beta-globin (RBG) The polyadenylation (polyA) message sequence has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 213, SEQ ID NO: 214, and SEQ ID NO: 215. In some embodiments, the nucleic acid molecule includes: from 5' to 3', (a) an hSyn promoter sequence that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity, (b) a miR-30 sequence guide sequence that has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; a miR-30 stem-loop sequence that has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) sequence identity; sequence of 4; and miR-30 follower sequence , which is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to SEQ ID NO: 34; ( c) A miR-218-1 leader sequence that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%, or more) identical to SEQ ID NO: 141 , 100%)) sequence identity; a miR-218-1 stem-loop sequence that has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%) with SEQ ID NO: 135 , 99% or more (e.g., 100%)) sequence identity; and a miR-218-1 follower sequence that has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; and (d) the RBG polyadenylation message sequence is identical to one or more of the following (e.g., both , three, four or five) have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity Properties: SEQ ID NO: 213, SEQ ID NO: 214 and SEQ ID NO: 215. In some embodiments, the nucleic acid molecule includes: from 5' to 3', (a) hSyn promoter sequence, which has the sequence of SEQ ID NO: 198; (b) miR-30 sequence guide sequence, which has the sequence of SEQ ID NO : the sequence of 19; the miR-30 stem-loop sequence, which has the sequence of SEQ ID NO: 4; and the miR-30 follower sequence, which has the sequence of SEQ ID NO: 34; (c) the miR-218-1 guide sequence, It has the sequence of SEQ ID NO: 141; the miR-218-1 stem-loop sequence, which has the sequence of SEQ ID NO: 135; and the miR-218-1 follower sequence, which has the sequence of SEQ ID NO: 147; and ( d) RBG polyadenylation message sequence having the sequence of any of the following: SEQ ID NO: 213, SEQ ID NO: 214 and SEQ ID NO: 215. In some embodiments, the nucleic acid molecule includes a nucleic acid sequence that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%) identical to SEQ ID NO: 260 or more (e.g., 100%)) sequence identity. In some embodiments, the nucleic acid molecule includes the nucleic acid sequence of SEQ ID NO: 260.
在一些實施例中,該核酸分子包括:從 5' 到 3',(a) 5' ITR 序列,其與 SEQ ID NO: 208 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性,(b) hSyn 啟動子序列,其與 SEQ ID NO: 198 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;(c) miR-30 序列引導序列,其與 SEQ ID NO: 19 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;miR-30莖環序列,其與 SEQ ID NO: 4 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;4 之序列;及 miR-30 隨從序列,其與 SEQ ID NO: 34 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 同一性;(d) miR-218-1 引導序列,其與 SEQ ID NO: 141 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;miR-218-1 莖環序列,其與 SEQ ID NO: 135 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;及 miR-218-1 隨從序列,其與 SEQ ID NO: 147 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;(e) RBG 多腺苷酸化訊息序列與以下中之一者或多者 (例如,兩者、三者、四者或五者) 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99 % 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 213、SEQ ID NO: 214 及 SEQ ID NO: 215;及 (f),3' ITR 序列,其與 SEQ ID NO: 212 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,核酸分子包括:從 5' 到 3',(a) 5' ITR 序列,其具有 SEQ ID NO: 208 之序列;(b) hSyn 啟動子序列,其具有 SEQ ID NO: 198 之序列;(c) miR-30 序列引導序列,其與 SEQ ID NO: 19 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;miR-30 莖環序列,其具有 SEQ ID NO: 4 之序列;及 miR-30 隨從序列,其與 SEQ ID NO: 34 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 同一性;(d) miR-218-1 引導序列,其與 SEQ ID NO: 141 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;miR-218-1 莖環序列,其具有 SEQ ID NO: 135 之序列;及 miR-218-1 隨從序列,其具有 SEQ ID NO: 147 之序列;(e) RBG 多腺苷酸化訊息序列與以下中之一者或多者 (例如,兩者、三者、四者或五者) 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99 % 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 213、SEQ ID NO: 214 及 SEQ ID NO: 215;及 (f) 3' ITR 序列,其具有 SEQ ID NO: 212 之序列。在一些實施例中,該核酸分子包括核酸序列,該核酸序列與 SEQ ID NO: 261 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如, 100%)) 序列261.在一些實施例中,該核酸分子包括 SEQ ID NO: 261 之核酸序列。In some embodiments, the nucleic acid molecule includes: from 5' to 3', (a) a 5' ITR sequence that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity, (b) an hSyn promoter sequence that has at least 85% (e.g., at least 85%) identity with SEQ ID NO: 198 , 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; (c) a miR-30 sequence guide sequence having SEQ ID NO: 19 At least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) sequence identity; a miR-30 stem-loop sequence that is SEQ ID NO: 4 has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) sequence identity; the sequence of 4 ; and a miR-30 satellite sequence that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100) identical to SEQ ID NO: 34 %)) identity; (d) a miR-218-1 guide sequence that has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; a miR-218-1 stem-loop sequence that has at least 85% (e.g., at least 85%, 90%, 95%, 96) with SEQ ID NO: 135 %, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; and a miR-218-1 follower sequence that is at least 85% (e.g., at least 85%) identical to SEQ ID NO: 147 , 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; (e) the RBG polyadenylation message sequence has one or more of the following (e.g., two, three, four, or five) have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 213, SEQ ID NO: 214 and SEQ ID NO: 215; and (f), a 3' ITR sequence that is at least 85% identical to SEQ ID NO: 212 (e.g., At least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the nucleic acid molecule includes: from 5' to 3', (a) a 5' ITR sequence having the sequence of SEQ ID NO: 208; (b) an hSyn promoter sequence having the sequence of SEQ ID NO: 198 sequence; (c) a miR-30 sequence guide sequence that is at least 85% identical to SEQ ID NO: 19 (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more Multiple (e.g., 100%)) sequence identity; a miR-30 stem-loop sequence having the sequence of SEQ ID NO: 4; and a miR-30 follower sequence having at least 85% (e.g., At least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identity; (d) a miR-218-1 guide sequence that is identical to SEQ ID NO. : 141 Having at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) sequence identity; miR-218-1 stem Loop sequence, which has the sequence of SEQ ID NO: 135; and miR-218-1 follower sequence, which has the sequence of SEQ ID NO: 147; (e) RBG polyadenylation message sequence and one or more of the following (e.g., two, three, four, or five) have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 213, SEQ ID NO: 214 and SEQ ID NO: 215; and (f) a 3' ITR sequence having the sequence of SEQ ID NO: 212. In some embodiments, the nucleic acid molecule includes a nucleic acid sequence that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%) identical to SEQ ID NO: 261 or more (eg, 100%)) sequence 261. In some embodiments, the nucleic acid molecule includes the nucleic acid sequence of SEQ ID NO: 261.
在一些實施例中,該核酸分子包括:從 5' 到 3',(a) 5' ITR 序列,其與 SEQ ID NO: 208 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性,(b) hSyn 啟動子序列,其與 SEQ ID NO: 198 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;198 之序列;(c) miR-30 序列引導序列,其與 SEQ ID NO: 19 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;miR-30莖環序列,其與 SEQ ID NO: 4 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;4 之序列;及 miR-30 隨從序列,其與 SEQ ID NO: 34 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 同一性;(d) miR-218-1 引導序列,其與 SEQ ID NO: 141 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;miR-218-1 莖環序列,其與 SEQ ID NO: 135 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;及 miR-218-1 隨從序列,其與 SEQ ID NO: 147 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;(e) RBG 多腺苷酸化訊息序列與以下中之一者或多者 (例如,兩者、三者、四者或五者) 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99 % 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 213、SEQ ID NO: 214 及 SEQ ID NO: 215;及 (f) 填充序列,其與以下中之一者或多者 (例如,兩者、三者、四者或五者) 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 250 及 SEQ ID NO: 251;及 (g) 3' ITR 序列,其與 SEQ ID NO: 212 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,核酸分子包括:從 5' 到 3',(a) 5' ITR 序列,其具有 SEQ ID NO: 208 之序列;(b) hSyn 啟動子序列,其具有 SEQ ID NO: 198 之序列;(c) miR-30 序列引導序列,其與 SEQ ID NO: 19 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;miR-30 莖環序列,其具有 SEQ ID NO: 4 之序列;及 miR-30 隨從序列,其與 SEQ ID NO: 34 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 同一性;(d) miR-218-1 引導序列,其與 SEQ ID NO: 141 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;miR-218-1 莖環序列,其具有 SEQ ID NO: 135 之序列;及 miR-218-1 隨從序列,其具有 SEQ ID NO: 147 之序列;(e) RBG 多腺苷酸化訊息序列與以下中之一者或多者 (例如,兩者、三者、四者或五者) 具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99 % 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 213、SEQ ID NO: 214 及 SEQ ID NO: 215;(f) 填充序列,其具有以下中之一者或多者 (例如,兩者、三者、四者或五者) 之序列:SEQ ID NO: 250 及 SEQ ID NO: 251;及 (g) 3' ITR 序列,其具有 SEQ ID NO: 212 之序列。In some embodiments, the nucleic acid molecule includes: from 5' to 3', (a) a 5' ITR sequence that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity, (b) an hSyn promoter sequence that has at least 85% (e.g., at least 85%) identity with SEQ ID NO: 198 , 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; sequence of 198; (c) miR-30 sequence guide sequence, which is identical to SEQ ID NO: 19 has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; miR-30 stem-loop A sequence that has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) sequence identity to SEQ ID NO: 4 ; the sequence of 4; and a miR-30 follower sequence that is at least 85% identical to SEQ ID NO: 34 (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identity; (d) a miR-218-1 guide sequence that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%) identical to SEQ ID NO: 141 , 98%, 99% or more (e.g., 100%)) sequence identity; a miR-218-1 stem-loop sequence that has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; and a miR-218-1 follower sequence that is at least 85% (e.g., 147) identical to SEQ ID NO: 147 , at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; (e) the RBG polyadenylation message sequence is identical to one of the following One or more (e.g., two, three, four, or five) have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more Multiple (e.g., 100%)) sequence identity: SEQ ID NO: 213, SEQ ID NO: 214, and SEQ ID NO: 215; and (f) a filler sequence that is identical to one or more of the following (e.g., Two, three, four, or five) have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 250 and SEQ ID NO: 251; and (g) a 3' ITR sequence that is at least 85% (e.g., at least 85%, 90%, 95%, 96) identical to SEQ ID NO: 212 %, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the nucleic acid molecule includes: from 5' to 3', (a) a 5' ITR sequence having the sequence of SEQ ID NO: 208; (b) an hSyn promoter sequence having the sequence of SEQ ID NO: 198 sequence; (c) a miR-30 sequence guide sequence that is at least 85% identical to SEQ ID NO: 19 (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more Multiple (e.g., 100%)) sequence identity; a miR-30 stem-loop sequence having the sequence of SEQ ID NO: 4; and a miR-30 follower sequence having at least 85% (e.g., At least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identity; (d) a miR-218-1 guide sequence that is identical to SEQ ID NO. : 141 Having at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) sequence identity; miR-218-1 stem Loop sequence, which has the sequence of SEQ ID NO: 135; and miR-218-1 follower sequence, which has the sequence of SEQ ID NO: 147; (e) RBG polyadenylation message sequence and one or more of the following (e.g., two, three, four, or five) have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 213, SEQ ID NO: 214 and SEQ ID NO: 215; (f) filler sequence, which has one or more of the following (e.g., two, three , four or five): SEQ ID NO: 250 and SEQ ID NO: 251; and (g) 3' ITR sequence, which has the sequence of SEQ ID NO: 212.
在一些實施例中,核酸分子在表現卡匣中經編碼,該表現卡匣與 SEQ ID NO: 256 之核酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,該表現卡匣具有 SEQ ID NO: 256 之核酸序列。In some embodiments, the nucleic acid molecule is encoded in a expression cassette that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97) identical to the nucleic acid sequence of SEQ ID NO: 256 %, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, the expression cassette has the nucleic acid sequence of SEQ ID NO: 256.
本揭露之抑制性核酸分子 (例如,抑制性 RNA 劑) 可為 GluK2 抑制劑。特定而言,GluK2 抑制劑可為 Grik2mRNA 表現抑制劑。抑制 GluK2 之表現亦可抑制 GluK5 之水平 (Ruiz 等人,J Neuroscience 2005)。雖然不希望受任何理論的束縛,但本揭露係基於單獨充分去除 GluK2 應該去除全部 GluK2/GluK5 異聚物的原則,因為單獨的 GluK5 次單元不能形成同聚物組裝體。 Inhibitory nucleic acid molecules (eg, inhibitory RNA agents) of the present disclosure can be GluK2 inhibitors. Specifically, GluK2 inhibitors can be inhibitors of Grik2 mRNA expression. Inhibiting the expression of GluK2 can also inhibit GluK5 levels (Ruiz et al., J Neuroscience 2005). While not wishing to be bound by any theory, this disclosure is based on the principle that sufficient removal of GluK2 alone should remove all GluK2/GluK5 heteropolymers, since individual GluK5 subunits cannot form homopolymer assemblies.
根據所揭示的方法及組成物,本文所揭示的抑制性核酸分子 (例如,抑制性 RNA 劑) 之長度可為 15 至 50 個核苷酸 (例如,15、16、17、18、19、20、21、22、23、24 個,或 25、30、35、40、45 個,或多達 50 個核苷酸)。例如,本文所揭示的抑制性核酸分子 (例如,抑制性 RNA 劑) 可具有 15 個核苷酸之長度。在另一實例中,抑制性核酸分子 (例如,抑制性 RNA 劑) 具有 16 個核苷酸之長度。在另一實例中,抑制性核酸分子 (例如,抑制性 RNA 劑) 具有 17 個核苷酸之長度。在另一實例中,抑制性核酸分子 (例如,抑制性 RNA 劑) 具有 18 個核苷酸之長度。在另一實例中,抑制性核酸分子 (例如,抑制性 RNA 劑) 具有 19 個核苷酸之長度。在另一實例中,抑制性核酸分子 (例如,抑制性 RNA 劑) 具有 20 個核苷酸之長度。在另一實例中,抑制性核酸分子 (例如,抑制性 RNA 劑) 具有 21 個核苷酸之長度。在另一實例中,抑制性核酸分子 (例如,抑制性 RNA 劑) 具有 22 個核苷酸之長度。在另一實例中,抑制性核酸分子 (例如,抑制性 RNA 劑) 具有 23 個核苷酸之長度。在另一實例中,抑制性核酸分子 (例如,抑制性 RNA 劑) 具有 24 個核苷酸之長度。在另一實例中,抑制性核酸分子 (例如,抑制性 RNA 劑) 具有 25 個核苷酸之長度。在另一實例中,抑制性核酸分子 (例如,抑制性 RNA 劑) 具有 25 至 30 個核苷酸之長度。在另一實例中,抑制性核酸分子 (例如,抑制性 RNA 劑) 具有 30 至 35 個核苷酸之長度。在另一實例中,抑制性核酸分子 (例如,抑制性 RNA 劑) 具有 35 至 40 個核苷酸之長度。在另一實例中,抑制性核酸分子 (例如,抑制性 RNA 劑) 具有 40 至 45 個核苷酸之長度。在另一實例中,抑制性核酸分子 (例如,抑制性 RNA 劑) 具有 45 至 50 個核苷酸之長度。According to the disclosed methods and compositions, the inhibitory nucleic acid molecules (e.g., inhibitory RNA agents) disclosed herein can be 15 to 50 nucleotides in length (e.g., 15, 16, 17, 18, 19, 20 , 21, 22, 23, 24, or 25, 30, 35, 40, 45, or up to 50 nucleotides). For example, inhibitory nucleic acid molecules (e.g., inhibitory RNA agents) disclosed herein may be 15 nucleotides in length. In another example, an inhibitory nucleic acid molecule (e.g., inhibitory RNA agent) is 16 nucleotides in length. In another example, an inhibitory nucleic acid molecule (e.g., inhibitory RNA agent) is 17 nucleotides in length. In another example, an inhibitory nucleic acid molecule (e.g., inhibitory RNA agent) is 18 nucleotides in length. In another example, an inhibitory nucleic acid molecule (e.g., inhibitory RNA agent) is 19 nucleotides in length. In another example, an inhibitory nucleic acid molecule (e.g., inhibitory RNA agent) is 20 nucleotides in length. In another example, an inhibitory nucleic acid molecule (e.g., inhibitory RNA agent) is 21 nucleotides in length. In another example, an inhibitory nucleic acid molecule (e.g., inhibitory RNA agent) is 22 nucleotides in length. In another example, an inhibitory nucleic acid molecule (e.g., inhibitory RNA agent) is 23 nucleotides in length. In another example, an inhibitory nucleic acid molecule (e.g., inhibitory RNA agent) is 24 nucleotides in length. In another example, an inhibitory nucleic acid molecule (e.g., inhibitory RNA agent) is 25 nucleotides in length. In another example, an inhibitory nucleic acid molecule (e.g., inhibitory RNA agent) is 25 to 30 nucleotides in length. In another example, an inhibitory nucleic acid molecule (e.g., inhibitory RNA agent) is 30 to 35 nucleotides in length. In another example, an inhibitory nucleic acid molecule (e.g., inhibitory RNA agent) is 35 to 40 nucleotides in length. In another example, an inhibitory nucleic acid molecule (e.g., inhibitory RNA agent) is 40 to 45 nucleotides in length. In another example, an inhibitory nucleic acid molecule (e.g., inhibitory RNA agent) is 45 to 50 nucleotides in length.
本揭露之抑制性 RNA 劑包括與 Grik2mRNA 之序列區域 (例如,SEQ ID NO: 164 至 SEQ ID NO: 174 中之任一者) 或其變體至少基本上互補或完全互補的序列,該互補性足以在細胞內條件下產生特異性結合。在一些實施例中,抑制性 RNA 劑包括與 Grik2mRNA 之序列區域至少基本上互補或完全互補的序列,該序列區域諸如 SEQ ID NO: 164,或其與 SEQ ID NO: 164 具有至少 85% 序列同一性的變體。例如,本揭露預期一種具有反義序列的抑制性 RNA 劑,該反義序列與 Grik2mRNA 之一個或多個區域的至少 7 個 (例如,至少 7、8、9、10、11、12、13、14、15、16、17、18、19、20、21、22 或更多個) 連續核苷酸互補。在特定實例中,抑制性 RNA 劑具有反義序列,該反義序列與 Grik2mRNA 之一個或多個區域的 7 個連續核苷酸互補。在另一實例中,抑制性 RNA 劑具有反義序列,該反義序列與 Grik2mRNA 之一個或多個區域的 8 個連續核苷酸互補。在另一實例中,抑制性 RNA 劑具有反義序列,該反義序列與 Grik2mRNA 之一個或多個區域的 9 個連續核苷酸互補。在另一實例中,抑制性 RNA 劑具有反義序列,該反義序列與 Grik2mRNA 之一個或多個區域的 10 個連續核苷酸互補。在另一實例中,抑制性 RNA 劑具有反義序列,該反義序列與 Grik2mRNA 之一個或多個區域的 11 個連續核苷酸互補。在另一實例中,抑制性 RNA 劑具有反義序列,該反義序列與 Grik2mRNA 之一個或多個區域的 12 個連續核苷酸互補。在另一實例中,抑制性 RNA 劑具有反義序列,該反義序列與 Grik2mRNA 之一個或多個區域的 13 個連續核苷酸互補。在另一實例中,抑制性 RNA 劑具有反義序列,該反義序列與 Grik2mRNA 之一個或多個區域的 14 個連續核苷酸互補。在另一實例中,抑制性 RNA 劑具有反義序列,該反義序列與 Grik2mRNA 之一個或多個區域的 15 個連續核苷酸互補。在另一實例中,抑制性 RNA 劑具有反義序列,該反義序列與 Grik2mRNA 之一個或多個區域的 16 個連續核苷酸互補。在另一實例中,抑制性 RNA 劑具有反義序列,該反義序列與 Grik2mRNA 之一個或多個區域的 17 個連續核苷酸互補。在另一實例中,抑制性 RNA 劑具有反義序列,該反義序列與 Grik2mRNA 之一個或多個區域的 18 個連續核苷酸互補。在另一實例中,抑制性 RNA 劑具有反義序列,該反義序列與 Grik2mRNA 之一個或多個區域的 19 個連續核苷酸互補。在另一實例中,抑制性 RNA 劑具有反義序列,該反義序列與 Grik2mRNA 之一個或多個區域的 20 個連續核苷酸互補。在另一實例中,抑制性 RNA 劑具有反義序列,該反義序列與 Grik2mRNA 之一個或多個區域的 21 個連續核苷酸互補。在另一實例中,抑制性 RNA 劑具有反義序列,該反義序列與 Grik2mRNA 之一個或多個區域的 22 個連續核苷酸互補。在再一實例中,抑制性 RNA 劑具有反義序列,該反義序列與 Grik2mRNA 之一個或多個區域的核苷酸 100% 互補。 Inhibitory RNA agents of the present disclosure include sequences that are at least substantially complementary or completely complementary to a sequence region of Grik2 mRNA (e.g., any one of SEQ ID NO: 164 to SEQ ID NO: 174) or a variant thereof, which complement Sufficient to produce specific binding under intracellular conditions. In some embodiments, the inhibitory RNA agent includes a sequence that is at least substantially complementary or completely complementary to a sequence region of Grik2 mRNA, such as SEQ ID NO: 164, or that is at least 85% sequence identical to SEQ ID NO: 164 Variations of identity. For example, the present disclosure contemplates an inhibitory RNA agent having an antisense sequence that is identical to at least 7 (e.g., at least 7, 8, 9, 10, 11, 12, 13) of one or more regions of Grik2 mRNA. , 14, 15, 16, 17, 18, 19, 20, 21, 22 or more) consecutive nucleotide complements. In a specific example, the inhibitory RNA agent has an antisense sequence that is complementary to 7 contiguous nucleotides in one or more regions of Grik2 mRNA. In another example, the inhibitory RNA agent has an antisense sequence that is complementary to 8 contiguous nucleotides in one or more regions of Grik2 mRNA. In another example, the inhibitory RNA agent has an antisense sequence that is complementary to 9 contiguous nucleotides in one or more regions of Grik2 mRNA. In another example, the inhibitory RNA agent has an antisense sequence that is complementary to 10 contiguous nucleotides of one or more regions of Grik2 mRNA. In another example, the inhibitory RNA agent has an antisense sequence that is complementary to 11 contiguous nucleotides of one or more regions of Grik2 mRNA. In another example, the inhibitory RNA agent has an antisense sequence that is complementary to 12 contiguous nucleotides of one or more regions of Grik2 mRNA. In another example, the inhibitory RNA agent has an antisense sequence that is complementary to 13 contiguous nucleotides of one or more regions of Grik2 mRNA. In another example, the inhibitory RNA agent has an antisense sequence that is complementary to 14 contiguous nucleotides of one or more regions of Grik2 mRNA. In another example, the inhibitory RNA agent has an antisense sequence that is complementary to 15 contiguous nucleotides of one or more regions of Grik2 mRNA. In another example, the inhibitory RNA agent has an antisense sequence that is complementary to 16 contiguous nucleotides of one or more regions of Grik2 mRNA. In another example, the inhibitory RNA agent has an antisense sequence that is complementary to 17 contiguous nucleotides of one or more regions of Grik2 mRNA. In another example, the inhibitory RNA agent has an antisense sequence that is complementary to 18 contiguous nucleotides of one or more regions of Grik2 mRNA. In another example, the inhibitory RNA agent has an antisense sequence that is complementary to 19 contiguous nucleotides of one or more regions of Grik2 mRNA. In another example, the inhibitory RNA agent has an antisense sequence that is complementary to 20 contiguous nucleotides of one or more regions of Grik2 mRNA. In another example, the inhibitory RNA agent has an antisense sequence that is complementary to 21 contiguous nucleotides of one or more regions of Grik2 mRNA. In another example, the inhibitory RNA agent has an antisense sequence that is complementary to 22 contiguous nucleotides of one or more regions of Grik2 mRNA. In yet another example, the inhibitory RNA agent has an antisense sequence that is 100% complementary to nucleotides in one or more regions of Grik2 mRNA.
本揭露預期一種抑制性 RNA 劑,當其結合至 Grik2mRNA 之一個或多個區域 (例如,以下中描述的 Grik2mRNA 之區域中之任一者:SEQ ID NO: 164 至 SEQ ID NO: 174) 時,與 Grik2mRNA 形成長度為 7 至 22 個 (例如,7、8、9、10、11、12、13、14、15、16、17、18、19、20、21 或22 個) 核苷酸之間的雙鏈體結構。在一些實施例中,本揭露之抑制性 RNA 劑可結合至 SEQ ID NO: 164 之序列內的 Grik2mRNA 之區域並與 Grik2mRNA 形成長度為 7 至 22 個 (例如,7、8、9、10、11、12、13、14、15、16、17、18、19、20、21 或22 個) 核苷酸之間的雙鏈體結構。例如,抑制性 RNA 劑與 Grik2mRNA 之間的雙鏈體結構之長度可為 7 個核苷酸。在另一實例中,抑制性 RNA 劑與 Grik2mRNA 之間的雙鏈體結構之長度可為 8 個核苷酸。在另一實例中,抑制性 RNA 劑與 Grik2mRNA 之間的雙鏈體結構之長度可為 9 個核苷酸。在另一實例中,抑制性 RNA 劑與 Grik2mRNA 之間的雙鏈體結構之長度可為 10 個核苷酸。在另一實例中,抑制性 RNA 劑與 Grik2mRNA 之間的雙鏈體結構之長度可為 11 個核苷酸。在另一實例中,抑制性 RNA 劑與 Grik2mRNA 之間的雙鏈體結構之長度可為 12 個核苷酸。在另一實例中,抑制性 RNA 劑與 Grik2mRNA 之間的雙鏈體結構之長度可為 13 個核苷酸。在另一實例中,抑制性 RNA 劑與 Grik2mRNA 之間的雙鏈體結構之長度可為 14 個核苷酸。在另一實例中,抑制性 RNA 劑與 Grik2mRNA 之間的雙鏈體結構之長度可為 15 個核苷酸。在另一實例中,抑制性 RNA 劑與 Grik2mRNA 之間的雙鏈體結構之長度可為 16 個核苷酸。在另一實例中,抑制性 RNA 劑與 Grik2mRNA 之間的雙鏈體結構之長度可為 17 個核苷酸。在另一實例中,抑制性 RNA 劑與 Grik2mRNA 之間的雙鏈體結構之長度可為 18 個核苷酸。在另一實例中,抑制性 RNA 劑與 Grik2mRNA 之間的雙鏈體結構之長度可為 19 個核苷酸。在另一實例中,抑制性 RNA 劑與 Grik2mRNA 之間的雙鏈體結構之長度可為 20 個核苷酸。在另一實例中,抑制性 RNA 劑與 Grik2mRNA 之間的雙鏈體結構之長度可為 21 個核苷酸。在再一實例中,抑制性 RNA 劑與 Grik2mRNA 之間的雙鏈體結構之長度可為 10 個核苷酸。 The present disclosure contemplates an inhibitory RNA agent that binds to one or more regions of Grik2 mRNA (eg, any of the regions of Grik2 mRNA described below: SEQ ID NO: 164 to SEQ ID NO: 174) When combined with Grik2 mRNA, 7 to 22 (e.g., 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, or 22) nucleotides in length are formed duplex structure between acids. In some embodiments, the inhibitory RNA agent of the present disclosure can bind to the region of Grik2 mRNA within the sequence of SEQ ID NO: 164 and form with Grik2 mRNA a length of 7 to 22 (e.g., 7, 8, 9, 10 , 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 or 22) duplex structure between nucleotides. For example, the duplex structure between the inhibitory RNA agent and Grik2 mRNA can be 7 nucleotides in length. In another example, the duplex structure between the inhibitory RNA agent and Grik2 mRNA can be 8 nucleotides in length. In another example, the duplex structure between the inhibitory RNA agent and Grik2 mRNA can be 9 nucleotides in length. In another example, the duplex structure between the inhibitory RNA agent and Grik2 mRNA can be 10 nucleotides in length. In another example, the duplex structure between the inhibitory RNA agent and Grik2 mRNA can be 11 nucleotides in length. In another example, the duplex structure between the inhibitory RNA agent and Grik2 mRNA can be 12 nucleotides in length. In another example, the duplex structure between the inhibitory RNA agent and Grik2 mRNA can be 13 nucleotides in length. In another example, the duplex structure between the inhibitory RNA agent and Grik2 mRNA can be 14 nucleotides in length. In another example, the duplex structure between the inhibitory RNA agent and Grik2 mRNA can be 15 nucleotides in length. In another example, the duplex structure between the inhibitory RNA agent and Grik2 mRNA can be 16 nucleotides in length. In another example, the duplex structure between the inhibitory RNA agent and Grik2 mRNA can be 17 nucleotides in length. In another example, the duplex structure between the inhibitory RNA agent and Grik2 mRNA can be 18 nucleotides in length. In another example, the duplex structure between the inhibitory RNA agent and Grik2 mRNA can be 19 nucleotides in length. In another example, the duplex structure between the inhibitory RNA agent and Grik2 mRNA can be 20 nucleotides in length. In another example, the duplex structure between the inhibitory RNA agent and Grik2 mRNA can be 21 nucleotides in length. In yet another example, the duplex structure between the inhibitory RNA agent and Grik2 mRNA can be 10 nucleotides in length.
根據所揭露的方法及組成物,由抑制性 RNA 劑 (例如,與以下中之任一者的核酸序列具有至少 85% (至少 86%、87%、88%、89%、90%、91%、92% 、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的藥劑:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 226 至 SEQ ID NO: 229 以及 SEQ ID NO: 238 至 SEQ ID NO: 241) 形成的雙鏈體結構,諸如由抑制性 RNA 劑 (其與 SEQ ID NO: 258 之核酸序列具有至少 85% 序列同一性) 與 Grik2mRNA 之一個或多個區域形成的雙鏈體結構可包括至少一個 (例如,至少 1、2、3、4、5、6、7、8、9、10、11、12 、13、14 或 15 個) 錯配。例如,雙鏈體結構可含有 1 個錯配。在另一實例中,雙鏈體結構含有 2 個錯配。在另一實例中,雙鏈體結構含有 3 個錯配。在另一實例中,雙鏈體結構含有 4 個錯配。在另一實例中,雙鏈體結構含有 5 個錯配。在另一實例中,雙鏈體結構含有 6 個錯配。在另一實例中,雙鏈體結構含有 7 個錯配。在另一實例中,雙鏈體結構含有 8 個錯配。在另一實例中,雙鏈體結構含有 9 個錯配。在另一實例中,雙鏈體結構含有 10 個錯配。在另一實例中,雙鏈體結構含有 11 個錯配。在另一實例中,雙鏈體結構含有 12 個錯配。在另一實例中,雙鏈體結構含有 13 個錯配。在另一實例中,雙鏈體結構含有 14 個錯配。在再一實例中,雙鏈體結構含有 15 個錯配。 According to the disclosed methods and compositions, an inhibitory RNA agent (e.g., having at least 85% (at least 86%, 87%, 88%, 89%, 90%, 91%) a nucleic acid sequence with any of the following , 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity: SEQ ID NO: 1 to SEQ ID NO: 19. SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 226 to SEQ ID NO: 229 and SEQ ID NO: 238 to SEQ ID NO: 241), such as one of an inhibitory RNA agent (which has at least 85% sequence identity with the nucleic acid sequence of SEQ ID NO: 258) and one of Grik2 mRNA or The duplex structure formed by the multiple regions may include at least one (e.g., at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15) mismatches . For example, a duplex structure can contain 1 mismatch. In another example, the duplex structure contains 2 mismatches. In another example, the duplex structure contains 3 mismatches. In another example, the duplex structure contains 4 mismatches. In another example, the duplex structure contains 5 mismatches. In another example, the duplex structure contains 6 mismatches. In another example, the duplex structure contains 7 mismatches. In another example, the duplex structure contains 8 mismatches. In another example, the duplex structure contains 9 mismatches. In another example, the duplex structure contains 10 mismatches. In another example, the duplex structure contains 11 mismatches. In another example, the duplex structure contains 12 mismatches. In another example, the duplex structure contains 13 mismatches. In another example, the duplex structure contains 14 mismatches. In yet another example, the duplex structure contains 15 mismatches.
據此,本揭露的一個目的涉及靶向 Grik2mRNA 的經分離之合成或重組抑制性核酸分子 (例如,抑制性 RNA 劑)。本揭露之抑制性 RNA 劑可為任何合適的類型,包括 RNA 或 DNA 抑制性多核苷酸。因此,所揭露之方法及組成物的特徵為 Grik2表現抑制劑,其為一種抑制性 RNA 劑 (例如,siRNA、shRNA、miRNA 或 shmiRNA)。抑制性 RNA 劑,包括反義 RNA 分子及反義 DNA 分子,可藉由與 Grik2mRNA 結合並阻止蛋白質轉譯或增加 mRNA 降解來直接阻斷其轉譯,從而降低 GluK2 蛋白之水平及活性。例如,具有至少約 19 個鹼基並且與編碼 GluK2 的 mRNA 轉錄本序列之獨特區域互補的抑制性 RNA 劑可以例如藉由習用技術 (例如本文所揭示的技術) 合成並藉由例如靜脈內注射或輸注以及本文所述的其他途徑,諸如直接注射到大腦區域來進行投予。使用反義技術特異性地減輕其序列已知的基因之基因表現的方法為本領域習知的 (例如,參見美國專利號 6,566,135、6,566,131、6,365,354、6,410,323、6,107,091、6,046,321 及 5,981,732,其各自以引用方式全部併入本文)。 Accordingly, one object of the present disclosure relates to isolated synthetic or recombinant inhibitory nucleic acid molecules (eg, inhibitory RNA agents) that target Grik2 mRNA. Inhibitory RNA agents of the present disclosure can be of any suitable type, including RNA or DNA inhibitory polynucleotides. Accordingly, the disclosed methods and compositions feature Grik2 expression inhibitors that are an inhibitory RNA agent (eg, siRNA, shRNA, miRNA, or shmiRNA). Inhibitory RNA agents, including antisense RNA molecules and antisense DNA molecules, can directly block its translation by binding to Grik2 mRNA and preventing protein translation or increasing mRNA degradation, thereby reducing the level and activity of GluK2 protein. For example, an inhibitory RNA agent that has at least about 19 bases and is complementary to a unique region of the mRNA transcript sequence encoding GluK2 can be synthesized, e.g., by conventional techniques (e.g., the techniques disclosed herein) and administered, e.g., by intravenous injection or Administration is by infusion, as well as other routes described herein, such as direct injection into areas of the brain. Methods for using antisense technology to specifically mitigate gene expression of genes whose sequence is known are known in the art (see, for example, U.S. Patent Nos. 6,566,135, 6,566,131, 6,365,354, 6,410,323, 6,107,091, 6,046,321, and 5,981,732, each of which is incorporated by reference All methods are incorporated into this article).
在特定實例中,本揭露之 Grik2抑制性 RNA 劑可為短干擾 RNA (siRNA)。 Grik2基因表現可以藉由以下方式來降低:使個體或細胞與小雙股 RNA (dsRNA) 或編碼其的載體接觸,從而導致能夠藉由以序列特異性方式降解 mRNA (例如,藉由 RNA 干擾途徑) 來特異性地抑制 Grik2表現的小雙股 RNA 之產生。為其序列已知的基因選擇合適之 dsRNA 或 dsRNA 編碼載體的方法為本領域已知的 (例如,參見 Tuschl, T. 等人(1999);Elbashir, S. M. 等人(2001);Hannon, GJ.(2002);McManus, MT. 等人(2002);Brummelkamp, TR. 等人(2002);美國專利號 6,573,099 及 6,506,559;以及國際專利公開號 WO 01/36646、WO 99/32619 及 WO 01/68836,其各自以引用方式全部併入本文)。 In specific examples, Grik2 inhibitory RNA agents of the present disclosure can be short interfering RNA (siRNA). Grik2 gene expression can be reduced by contacting individuals or cells with small double-stranded RNA (dsRNA) or vectors encoding it, resulting in degradation of the mRNA in a sequence-specific manner (e.g., via the RNA interference pathway ) to specifically inhibit the production of small double-stranded RNA expressed by Grik2 . Methods for selecting appropriate dsRNA or dsRNA-encoding vectors for genes whose sequences are known are known in the art (see, for example, Tuschl, T. et al. (1999); Elbashir, SM et al. (2001); Hannon, GJ. (2002); McManus, MT. et al. (2002); Brummelkamp, TR. et al. (2002); U.S. Patent Nos. 6,573,099 and 6,506,559; and International Patent Publication Nos. WO 01/36646, WO 99/32619 and WO 01/68836 , each of which is incorporated herein by reference in its entirety).
本揭露之 Grik2抑制性 RNA 劑亦可為短髮夾 RNA (shRNA)。shRNA 為一種 RNA 之序列,其形成緊密的髮夾轉彎,可用於經由 RNA 干擾而使基因表現緘默化。shRNA 一般使用經導入標靶細胞內之載體表現,其中該載體通常利用普遍存在之 U6 啟動子來確保 shRNA 的組成型表現。該載體通常被傳遞至子代細胞上,使基因緘默化在細胞分裂後得以維持。shRNA 髮夾結構藉由細胞結構切割為 siRNA,然後與 RNA 誘導型緘默化複合體 (RISC) 結合。該複合體結合至並切割與其所結合之 siRNA 序列相匹配的 mRNA。 Grik2 inhibitory RNA agents of the present disclosure can also be short hairpin RNA (shRNA). shRNA is a sequence of RNA that forms tight hairpin turns and can be used to silence gene expression via RNA interference. shRNA is generally expressed using a vector introduced into target cells, which usually utilizes the ubiquitous U6 promoter to ensure constitutive expression of shRNA. The vector is typically passed onto daughter cells, allowing gene silencing to be maintained after cell division. The shRNA hairpin structure is cleaved into siRNA by cellular structures and then binds to the RNA-induced silencing complex (RISC). This complex binds to and cleaves mRNA that matches the sequence of the siRNA to which it binds.
另外,本揭露之 Grik2表現抑制劑可為微小 RNA (miRNA)。miRNA 具有本領域中之一般意義並且指代例如通常長度為 21 至 22 個核苷酸的微小 RNA 分子,但已經報導 19 個及多達 23 個核苷酸之長度,並且可以用於抑制所靶向之 mRNA 的轉譯。miRNA 各自由較長之前驅 RNA 分子 (「前體 miRNA」) 加工而成。前驅 miRNA 從非蛋白質編碼基因轉錄而來。前驅 miRNA 具有兩個互補區域,使它們能夠形成莖環樣或折回樣結構,該結構在動物體內被稱為 Dicer 的核糖核酸酶 III 樣核酸酶切割。經加工之 miRNA 通常為含有「種子序列」(通常為 6 至 8 個核苷酸) 的莖之一部分,該序列與標靶 mRNA 之一個區域完全或基本互補。經加工之 miRNA (亦稱為「成熟 miRNA」) 成為大復合體的一部分,以下調 (例如,減少轉譯或降解 mRNA) 特定標靶基因。 In addition, the Grik2 expression inhibitor of the present disclosure may be microRNA (miRNA). miRNA has a general meaning in the art and refers to, for example, microRNA molecules that are typically 21 to 22 nucleotides in length, but lengths of 19 and up to 23 nucleotides have been reported and can be used to inhibit targeted Translation of its mRNA. Each of the miRNAs is processed from a longer precursor RNA molecule ("precursor-miRNA"). Precursor miRNAs are transcribed from non-protein-coding genes. Precursor miRNAs possess two complementary regions that enable them to form stem-loop- or fold-back-like structures that are cleaved in animals by a ribonuclease III-like nuclease called Dicer. Processed miRNA is usually part of a stem containing a "seed sequence" (usually 6 to 8 nucleotides) that is completely or substantially complementary to a region of the target mRNA. Processed miRNAs (also called "mature miRNAs") become part of large complexes to downregulate (eg, reduce translation or degrade the mRNA) specific target genes.
此外,本揭露之 GluK2 抑制劑可為 miRNA 適應之 shRNA (shmiRNA)。shmiRNA 劑指代在含有微小 RNA 側翼及環序列的微小 RNA 支架 (例如,E-miR-30 支架) 之 -5p 或 -3p 臂內併入反義序列的嵌合分子。相較於 shRNA,shmiRNA 通常具有基於微小 RNA 衍生序列的更長之莖環結構,其中 -5p 及 -3p 臂表現出完全或基本上的互補性 (例如,錯配、G:U 搖擺)。由於其較長之序列及加工要求,shmiRNA 通常從 Pol II 啟動子表現。相較於基於 shRNA 的藥劑,此等構建體亦顯示出毒性降低。In addition, the GluK2 inhibitor of the present disclosure can be a miRNA-adapted shRNA (shmiRNA). shmiRNA agents refer to chimeric molecules that incorporate antisense sequences within the -5p or -3p arm of a microRNA scaffold (e.g., E-miR-30 scaffold) containing microRNA flanking and loop sequences. Compared to shRNA, shmiRNA usually has a longer stem-loop structure based on microRNA-derived sequences, in which the -5p and -3p arms exhibit complete or substantial complementarity (e.g., mismatch, G:U swing). Due to their long sequence and processing requirements, shmiRNAs are usually expressed from the Pol II promoter. These constructs also showed reduced toxicity compared to shRNA-based agents.
多種 miRNA 可用於敲低 Grik2mRNA 表現 (以及隨後的其基因產物 GluK2)。miRNA 可以與不同的標靶轉錄本或單個標靶轉錄本之不同結合位點互補。多順反子或多基因轉錄本亦可用於提高標靶基因敲低的效率。編碼相同 miRNA 或不同 miRNA 的多個基因可以在單個轉錄本中一起調節,或在單個載體卡匣中作為單獨的轉錄本調節。本揭露之 miRNA 可經包裝在載體內,該載體諸如病毒載體,包括但不限於重組腺相關病毒 (rAAV) 載體、慢病毒載體、反轉錄病毒載體及基於反轉錄轉座子的載體系統。 Various miRNAs can be used to knock down Grik2 mRNA expression (and subsequently its gene product GluK2). MiRNAs can be complementary to different target transcripts or to different binding sites on a single target transcript. Polycistronic or multigene transcripts can also be used to increase the efficiency of target gene knockdown. Multiple genes encoding the same miRNA or different miRNAs can be regulated together in a single transcript or as separate transcripts in a single vector cassette. The miRNAs of the present disclosure can be packaged within vectors, such as viral vectors, including but not limited to recombinant adeno-associated virus (rAAV) vectors, lentiviral vectors, retroviral vectors, and retrotransposon-based vector systems.
與 Grik2mRNA 之正義標靶序列互補 (例如,基本上或完全互補) 的抑制性 RNA 通常由用於產生任何前述抑制劑 (例如,siRNA、shRNA、miRNA 或 shmiRNA) 的 DNA 序列編碼。編碼目標雙股 RNA 的 DNA 可以併入基因卡匣 (例如,其中 DNA 之轉錄受啟動子控制的表現卡匣) 內。 增強引導序列的 RISC 裝載 Inhibitory RNAs that are complementary (eg, substantially or completely complementary) to the sense target sequence of Grik2 mRNA are typically encoded by the DNA sequence used to generate any of the aforementioned inhibitors (eg, siRNA, shRNA, miRNA, or shmiRNA). DNA encoding the double-stranded RNA of interest can be incorporated into a genetic cassette (eg, an expression cassette in which transcription of the DNA is controlled by a promoter). Enhanced RISC loading of guide sequences
RNA 干擾中的一個步驟為將微小 RNA 引導股組裝到 RNA 誘導型緘默化複合體 (RISC) 蛋白複合體中,該蛋白複合體介導標靶 mRNA 切割。微小 RNA 作為雙股雙鏈體而產生,該雙鏈體含有透過與隨從股進行互補鹼基配對而經雜交的引導股。引導股組裝到 RISC 複合體中通常伴隨著隨從股之降解。RISC 組裝有利於具有 5' 端的微小 RNA 股更容易磨損 (fray) 或從雙鏈體中釋放出來。本文所述的構建體經設計為藉由使在引導鏈 5' 端處之鹼基配對不穩定 (例如,藉由在引導股之 5' 端或附近引入 U-A 對或 U-G 搖擺對) 並使在隨從股之 5' 端處之鹼基配對強化 (tightening) (例如,藉由在隨從股之 5' 端或附近引入 G-C 對),以有利於藉由 RISC 進行引導選擇及裝載而不利於隨從選擇。這種策略是可以實現的,因為如果引導股與標靶 mRNA 之間的錯配發生在引導股之第一個核苷酸或靠近 3' 端處 (例如,在最後四個核苷酸內),則它們可以被很好地耐受。此類策略不僅增強引導股的上靶敲低,而且降低 RISC 蛋白複合體產生或保留隨從股所致的脫靶效應。One step in RNA interference involves the assembly of microRNA guide strands into the RNA-induced silencing complex (RISC) protein complex, which mediates target mRNA cleavage. MicroRNAs are produced as double-stranded duplexes containing a leader strand that hybridizes by complementary base pairing with a follower strand. Assembly of the leader strand into the RISC complex is often accompanied by degradation of the follower strand. RISC assembly favors microRNA strands with 5' ends that are more likely to fray or be released from the duplex. The constructs described herein are designed by destabilizing base pairing at the 5' end of the guide strand (e.g., by introducing a U-A pair or a U-G rocker pair at or near the 5' end of the guide strand) and causing Base pairing tightening at the 5' end of the follower strand (e.g., by introducing G-C pairs at or near the 5' end of the follower strand) to facilitate guide selection and loading by RISC and to the detriment of follower selection . This strategy is possible if the mismatch between the guide strand and the target mRNA occurs at the first nucleotide of the guide strand or close to the 3' end (e.g., within the last four nucleotides) , they are well tolerated. Such strategies not only enhance on-target knockdown of the guide strand but also reduce off-target effects caused by the generation or retention of the follower strand by the RISC protein complex.
據此,本文所述的抗 Grik2反義分子 (例如,微小 RNA、shRNA、siRNA 或 shmiRNA) 包括一個或多個修飾,該修飾增強引導股的 RISC 裝載或保留並降低隨從股的 RISC 裝載或保留,增加細胞內引導股與隨從股的比率,並增加標靶 Grik2mRNA 的敲低之水平。 Accordingly, anti -Grik2 antisense molecules (e.g., microRNA, shRNA, siRNA, or shmiRNA) described herein include one or more modifications that enhance RISC loading or retention of the leader strand and reduce RISC loading or retention of the follower strand. , increasing the ratio of intracellular leader strands to follower strands and increasing the level of knockdown of the target Grik2 mRNA.
在本文所述的數種構建體中,引導股之 5' 端處或附近的鹼基配對不穩定性增加,以增強引導股的 RISC 裝載或保留。例如,鹼基配對不穩定性係藉由在數種構建體之引導股之 5' 端處或附近引入 U-A 對或 U-G 搖擺對來實現。In several of the constructs described here, base pairing instability is increased at or near the 5' end of the guide strand to enhance RISC loading or retention of the guide strand. For example, base pairing instability was achieved by introducing U-A pairs or U-G wobble pairs at or near the 5' end of the leading strand of several constructs.
在本文所述的數種構建體中,藉由在隨從股之 5' 端處引入鹼基配對不穩定性,隨從股的 RISC 裝載或保留降低。鹼基配對不穩定性係藉由在隨從股之 5' 端處或附近添加 C-G 對來引入。In several constructs described herein, RISC loading or retention of the follower strand is reduced by introducing base pairing instability at the 5' end of the follower strand. Base pairing instability is introduced by adding C-G pairs at or near the 5' end of the follower strand.
本揭露之數種構建體亦經設計為藉由在引導股中引入 5'-末端尿嘧啶來增強引導股的 RISC 裝載或保留。該 5' 末端核苷酸不參與雜交至標靶 mRNA (例如, Grik2mRNA),並且通常錨定在 Argonaute RISC 催化組分 2 (Ago2) 蛋白之磷酸鹽結合口袋中。 Several constructs of the present disclosure are also designed to enhance RISC loading or retention of the guide strand by introducing a 5'-terminal uracil into the guide strand. This 5' terminal nucleotide is not involved in hybridization to the target mRNA (eg, Grik2 mRNA) and is normally anchored in the phosphate binding pocket of the Argonaute RISC catalytic component 2 (Ago2) protein.
藉由在引導股之種子區域 (對應於引導股之核苷酸 2 至 7;g2 至 g7) 中引入一個或多個錯配 (例如,1、2、3、4、5、6、7 或更多個錯配),數種所揭示的構建體之隨從股的 RISC 裝載或保留降低。該策略用於促進 RISC 裝載期間隨從股的展開及卸載。雖然引導股之種子區域 (引導核苷酸 2 至 8,g2 至 g8) 及中間區域的廣泛互補性對於 Ago2 介導的 mRNA 切割至關重要,但不需要在 3' 端處之鹼基配對。事實上,已確定引導股之位置 g18、g19、g20、g21 處與標靶 mRNA 的錯配會減弱引導股從 Ago2 釋放,這是一種由標靶 mRNA 介導的卸載活動。By introducing one or more mismatches (e.g., 1, 2, 3, 4, 5, 6, 7, or (more mismatches), the RISC loading or retention of the follower strands of several of the disclosed constructs was reduced. This strategy is used to facilitate the unfolding and unloading of follower strands during RISC loading. Although extensive complementarity in the seed region of the guide strand (guide nucleotides 2 to 8, g2 to g8) and the middle region is critical for Ago2-mediated mRNA cleavage, base pairing at the 3' end is not required. Indeed, it was determined that mismatches of the guide strand at positions g18, g19, g20, and g21 with the target mRNA attenuate the release of the guide strand from Ago2, an unloading activity mediated by the target mRNA.
對於本文所揭示的數種構建體,從 Grik2構建體之莖環結構切除環區域的 Dicer 切割藉由將 U-G 搖擺對替換為 C-G 對而得以增強。本揭露之 Grik2mRNA 靶向構建體利用前述修飾來促進引導股與隨從股產生之比率的增加並增強 Grik2的緘默化以治療癲癇發作疾病 (例如,TLE)。 For several of the constructs disclosed herein, Dicer cleavage that excises the loop region from the stem-loop structure of the Grik2 construct is enhanced by replacing the UG rocker pairs with CG pairs. The Grik2 mRNA targeting constructs of the present disclosure utilize the aforementioned modifications to promote an increase in the ratio of leader to follower strand production and enhance silencing of Grik2 to treat epileptic seizure disorders (eg, TLE).
因此,本文所述的抑制性 RNA 分子可包括莖環序列,該莖環序列含有從嵌入 E-miR-30 微小 RNA 支架內的抗
Grik2序列 GI (SEQ ID NO: 16) 及與其互補的序列 (參見,例如,表 2 (例如,SEQ ID NO: 1 至 SEQ ID NO: 15、SEQ ID NO: 226 至 SEQ ID NO: 229 以及 SEQ ID NO: 238 至 SEQ ID NO: 241)) 或與其具有至少 85% (至少 85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的其變體合理地設計的引導股及隨從股序列。
表 2 :含有反義序列 GI 或其變體的 Grik2 靶向構建體
據此,本揭露之
Grik2靶向反義構建體可包括下表 3 中所述的引導股 (SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 230 至 SEQ ID NO: 233 以及 SEQ ID NO: 242 至 SEQ ID NO: 245) 及隨從股 (SEQ ID NO: 31 至 SEQ ID NO: 45、SEQ ID NO: 234 至 SEQ ID NO: 237 以及 SEQ ID NO: 246 至 SEQ ID NO: 249) :
表 3 :從 E-miR-30 支架中之 GI 序列合理地設計的引導股及隨從股對
本文亦揭示抑制性 RNA 分子,其可包括莖環序列,該莖環序列含有從嵌入 E-miR-124-3 微小 RNA 支架內的抗
Grik2序列 G9 (SEQ ID NO: 63) 及與其互補的序列 (參見,例如,表 4 (例如,SEQ ID NO: 46 至 SEQ ID NO: 62)) 或與其具有至少 85% (至少 85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的其變體合理地設計的引導股及隨從股序列。
表 4 :含有反義序列 G9 或其變體的 Grik2 靶向構建體
據此,本揭露之
Grik2靶向反義構建體可包括下表 5 中所述的引導股 (SEQ ID NO: 63 至 SEQ ID NO: 79) 及隨從股 (SEQ ID NO: 80 至 SEQ ID NO: 96) 對:
表 5 :從 miR-124 支架中之 G9 序列合理地設計的引導股及隨從股對
本文所述的抑制性 RNA 分子可包括莖環序列,該莖環序列含有從嵌入 E-miR-124-3 微小 RNA 支架內的抗
Grik2序列 MW (SEQ ID NO: 109) 及與其互補的序列 (參見,例如,表 6 (例如,SEQ ID NO: 97 至 SEQ ID NO: 108)) 或與其具有至少 85% (至少 85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的其變體合理地設計的引導股及隨從股序列。
表 6 :含有反義序列 MW 或其變體的 Grik2 靶向構建體
據此,本揭露之
Grik2靶向反義構建體可包括下表 7 中所述的引導股 (SEQ ID NO: 109 至 SEQ ID NO: 120) 及隨從股 (SEQ ID NO: 121 至 SEQ ID NO: 132) 對:
表 7 :從 miR-124 支架中之 MW 序列合理地設計的引導股及隨從股對
本文所述的抑制性 RNA 分子可包括莖環序列,該莖環序列含有從嵌入 E-miR-218 微小 RNA 支架內的抗
Grik2序列 MW (SEQ ID NO: 109) 及與其互補的序列 (參見,例如,表 8 (例如,SEQ ID NO: 133 至 SEQ ID NO: 138)) 或與其具有至少 85% (至少 85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的其變體合理地設計的引導股及隨從股序列。
表 8 :含有反義序列 MW 或其變體的 Grik2 靶向構建體
據此,本揭露之
Grik2靶向反義構建體可包括下表 9 中所述的引導股 (SEQ ID NO: 139 至 SEQ ID NO: 144) 及隨從股 (SEQ ID NO: 145 至 SEQ ID NO: 146) 對:
表 9 :從 miR-218 支架中之 MW 序列合理地設計的引導股及隨從股對
前述序列表示為可以併入本揭露之載體中的 DNA ( 亦即,cDNA) 序列。此等序列亦可表示為從細胞內之載體合成的相對應 RNA 序列。本領域技術人員會理解,除了尿苷被胸苷取代以外,cDNA 序列等同於 mRNA 序列,並且可以用於本文相同之目的,亦即,生成用於抑制 Grik2mRNA 之表現的多核苷酸。在 DNA 載體 (例如 AAV) 的情況下,含有反義核酸的多核苷酸為 DNA 序列。在 RNA 載體的情況下,基因轉殖卡匣併入了本文所述的反義 DNA 序列之 RNA 等同物。 The aforementioned sequences are represented as DNA (ie, cDNA) sequences that can be incorporated into the vectors of the present disclosure. These sequences can also be expressed as corresponding RNA sequences synthesized from vectors within the cell. One skilled in the art will understand that the cDNA sequence is equivalent to the mRNA sequence except that uridine is replaced by thymidine and can be used for the same purpose herein, namely, to generate polynucleotides for inhibiting the expression of Grik2 mRNA. In the case of DNA vectors (eg, AAV), the polynucleotide containing the antisense nucleic acid is the DNA sequence. In the case of RNA vectors, the gene transfer cassette incorporates the RNA equivalent of the antisense DNA sequence described herein.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 1 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 1 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 1 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 1 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (for example, at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (for example) the nucleic acid sequence of SEQ ID NO: 1 , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 1 Sequence identity. In another example, the inhibitory RNA can be at least 95% (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%) identical to the nucleic acid sequence of SEQ ID NO: 1 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 1.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 2 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 2 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 2 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 2 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (for example, at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (for example) the nucleic acid sequence of SEQ ID NO: 2). , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% identical (e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 2 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 2 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 2.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 3 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 3 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 3 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列。同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 3 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (for example, at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (for example) the nucleic acid sequence of SEQ ID NO: 3). , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 3 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 3 ) sequence. Identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 3.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 4 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 4 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 4 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列4同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 4 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (for example, at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (for example) the nucleic acid sequence of SEQ ID NO: 4). , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 4 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 4 ) sequence 4 identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 4.
本揭露之抑制性 RNA 序列與 SEQ ID NO:5 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 5 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 5 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 5 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 5 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 5 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 5.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 6 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 6 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 6 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 6 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (for example, at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (for example) the nucleic acid sequence of SEQ ID NO: 6). , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 6 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 6 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 6.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 7 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 7 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 7 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 7 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (for example, at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (for example) the nucleic acid sequence of SEQ ID NO: 7). , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% identical (e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 7 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 7 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 7.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 8 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 8 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 8 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列。同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 8 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (for example, at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (for example) the nucleic acid sequence of SEQ ID NO: 8). , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 8 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 8 ) sequence. Identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 8.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 9 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 9 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 9 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 9 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (for example, at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (for example) the nucleic acid sequence of SEQ ID NO: 9). , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 9 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 9 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 9.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 10 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 10 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 10 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 10 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 10 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 10 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 10.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 11 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 11 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 11 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 11 之核酸序列。The inhibitory RNA sequence of the present disclosure and the nucleic acid sequence of SEQ ID NO: 11 may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 11 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 11 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 11.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 12 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 12 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 12 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 12 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 12 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 12 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 12.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 13 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 13 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 13 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 13 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 13 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 13 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 13.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 14 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 14 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 14 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 14 之核酸序列。The inhibitory RNA sequence of the present disclosure and the nucleic acid sequence of SEQ ID NO: 14 may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 14 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 14 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 14.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 15 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 15 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 15 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 15 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 15 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 15 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 15.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 226 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 226 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 226 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 226 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 226 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 226 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 226.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 227 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 227 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 227 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 227 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 227 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 227 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 227.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 228 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 228 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 228 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 228 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 228 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 228 ) sequence identity. In yet another example, the inhibitory RNA can have the nucleic acid sequence of SEQ ID NO: 228.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 229 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 229 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 229 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 229 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 229 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 229 ) sequence identity. In yet another example, the inhibitory RNA can have the nucleic acid sequence of SEQ ID NO: 229.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 238 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 238 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 238 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列。同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 238 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 238 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 238 ) sequence. Identity. In yet another example, the inhibitory RNA can have the nucleic acid sequence of SEQ ID NO: 238.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 239 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 239 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 239 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 239 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 239 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 239 ) sequence identity. In yet another example, the inhibitory RNA can have the nucleic acid sequence of SEQ ID NO: 239.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 240 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 240 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 240 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 240 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 240 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 240 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 240.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 241 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 241 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 241 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 241 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 241 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 241 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 241.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 46 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 46 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 46 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 46 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 46 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 46 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 46.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 47 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 47 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 47 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 47 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 47 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 47 ) sequence identity. In yet another example, the inhibitory RNA can have the nucleic acid sequence of SEQ ID NO: 47.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 48 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 48 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 48 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 48 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 48 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 48 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 48.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 49 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 49 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 49 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 49 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 49 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 49 ) sequence identity. In yet another example, the inhibitory RNA can have the nucleic acid sequence of SEQ ID NO: 49.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 50 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 50 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 50 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 50 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 50 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 50 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 50.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 51 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 51 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 51 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 51 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 51 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 51 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 51.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 52 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 52 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 52 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 52 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% identical (e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 52 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 52 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 52.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 53 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 53 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 53 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 53 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% identical (e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 53 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 53 ) sequence identity. In yet another example, the inhibitory RNA can have the nucleic acid sequence of SEQ ID NO: 53.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 54 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 54 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 54 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 54 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 54 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 54 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 54.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 55 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 55 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 55 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 55 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% identical (e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 55 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 55 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 55.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 56 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 56 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 56 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 56 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 56 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 56 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 56.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 57 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 57 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 57 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 57 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% identical (e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 57 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 57 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 57.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 58 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 58 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 58 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 58 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% identical (e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 58 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 58 ) sequence identity. In yet another example, the inhibitory RNA can have the nucleic acid sequence of SEQ ID NO: 58.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 59 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 59 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 59 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 59 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 59 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 59 ) sequence identity. In yet another example, the inhibitory RNA can have the nucleic acid sequence of SEQ ID NO: 59.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 60 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 60 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 60 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列在又一實例中,抑制性 RNA 可以具有 SEQ ID NO: 60 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 60 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 60 ) Sequence In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 60.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 61 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 61 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 61 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 61 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 61 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 61 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 61.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 62 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 62 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 62 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 62 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 62 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 62 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 62.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 97 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 97 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 97 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 97 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 97 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 97 ) sequence identity. In yet another example, the inhibitory RNA can have the nucleic acid sequence of SEQ ID NO: 97.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 98 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 98 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 98 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 98 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 98 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 98 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 98.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 99 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 99 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 99 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 99 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 99 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 99 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 99.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 100 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 100 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 100 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 100 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 100 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 100 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 100.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 101 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 101 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 101 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 101 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 101 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 101 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 101.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 102 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 102 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 102 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 102 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 102 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 102 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 102.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 103 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 103 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 103 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 103 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 103 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 103 ) sequence identity. In yet another example, the inhibitory RNA can have the nucleic acid sequence of SEQ ID NO: 103.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 104 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 104 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 104 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 104 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 104 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 104 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 104.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 105 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 105 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 105 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 105 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 105 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 105 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 105.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 106 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 106 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 106 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 106 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 106 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 106 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 106.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 107 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 107 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 107 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 107 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 107 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 107 ) sequence identity. In yet another example, the inhibitory RNA can have the nucleic acid sequence of SEQ ID NO: 107.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 108 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 108 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 108 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 108 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 108 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 108 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 108.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 133 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 133 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 133 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 133 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 133 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 133 ) sequence identity. In yet another example, the inhibitory RNA can have the nucleic acid sequence of SEQ ID NO: 133.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 134 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 134 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 134 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 134 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 134 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 134 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 134.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 135 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 135 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 135 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 135 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 135 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 135 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 135.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 136 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 136 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 136 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 136 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 136 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 136 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 136.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 137 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 137 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 137 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 137 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 137 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 137 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 137.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 138 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 138 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 138 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 138 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 138 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 138 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 138.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 258 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 258 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 258 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 258 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 258 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 258 ) sequence identity. In yet another example, the inhibitory RNA can have the nucleic acid sequence of SEQ ID NO: 258.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 259 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 259 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 259 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 259 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 259 Sequence identity. In another example, the inhibitory RNA may be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 259 ) sequence identity. In yet another example, the inhibitory RNA can have the nucleic acid sequence of SEQ ID NO: 259.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 260 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 260 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 260 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 260 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 260 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 260 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 260.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 261 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 261 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 261 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 261 之核酸序列。The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 261 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 261 ) sequence identity. In yet another example, the inhibitory RNA can have the nucleic acid sequence of SEQ ID NO: 261.
本揭露之抑制性 RNA 序列與 SEQ ID NO: 256 之核酸序列可具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。例如,抑制性 RNA 可以與 SEQ ID NO: 256 之核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在另一實例中,抑制性 RNA 可以與 SEQ ID NO: 256 之核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在又一實例中,抑制性 RNA 可具有 SEQ ID NO: 256 之核酸序列。 具有搖擺鹼基對的抑制性多核苷酸 The inhibitory RNA sequence of the present disclosure may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., at least 85%, 90%, 95%, 99%) or more (e.g. , 100%)) sequence identity. For example, the inhibitory RNA may be at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) identical to the nucleic acid sequence of SEQ ID NO: 256 Sequence identity. In another example, the inhibitory RNA can be at least 95% identical (e.g., at least 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) to the nucleic acid sequence of SEQ ID NO: 256 ) sequence identity. In yet another example, the inhibitory RNA may have the nucleic acid sequence of SEQ ID NO: 256. Inhibitory polynucleotides with wobble base pairs
本揭露之進一步特徵為具有一個或多個搖擺鹼基對的抑制性 RNA 劑。四個主要的搖擺鹼基對為鳥嘌呤-尿嘧啶 (G-U)、次黃嘌呤-尿嘧啶 (I-U)、次黃嘌呤-腺嘌呤 (I-A) 及次黃嘌呤-胞嘧啶 (I-C),其中次黃嘌呤代表核苷肌苷。G-U 搖擺鹼基對已顯示出與 G-C、A-T 及 A-U 相似的熱力學穩定性 (Saxena 等人,2003, J Biol Chem, 278(45):44312-9)。Further features of the present disclosure are inhibitory RNA agents having one or more wobble base pairs. The four main wobble base pairs are guanine-uracil (G-U), hypoxanthine-uracil (I-U), hypoxanthine-adenine (I-A) and hypoxanthine-cytosine (I-C). Xanthine represents the nucleoside inosine. The G-U wobble base pair has shown similar thermodynamic stability to G-C, A-T, and A-U (Saxena et al., 2003, J Biol Chem, 278(45):44312-9).
據此,本揭露提供一種具有核苷酸序列的抑制性 RNA 劑,該核苷酸序列與以下中之任一者之標靶區域的補體具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如, 100%)) 序列同一性:SEQ ID NO: 164 至 SEQ ID NO: 174 (例如,抑制性 RNA 與 Grik2基因序列之反義股可具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%) 序列同一性)。特定而言,本揭露之抑制性 RNA 劑可以具有 1、2 或 3 個與相對應的所比對之人類 Grik2mRNA 轉錄本 (例如,SEQ ID NO: 164 至 SEQ ID NO: 174 中之任一者) 不互補的核苷酸。因此,本揭露之抑制性 RNA 劑可具有核苷酸序列,該核苷酸序列與以下中之任一者之標靶區域的補體至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%))、至少 86% (例如,至少 86%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%))、至少 87% (例如,至少 87%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%))、至少 88% (例如,至少 88%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%))、至少 89% (例如,至少 89%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 或至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 相同:SEQ ID NO: 164 至 SEQ ID NO: 174。與所比對之 Grik2mRNA 序列的互補序列並非 100% 相同的核苷酸可為搖擺核苷酸。 Accordingly, the present disclosure provides an inhibitory RNA agent having a nucleotide sequence that shares at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 164 to SEQ ID NO: 174 (e.g., between the inhibitory RNA and the Grik2 gene sequence Antisense shares may have at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% , 99% or more (e.g., 100%) sequence identity). Specifically, inhibitory RNA agents of the present disclosure may have 1, 2, or 3 corresponding aligned human Grik2 mRNA transcripts ( For example, any of SEQ ID NO: 164 to SEQ ID NO: 174) are non-complementary nucleotides. Therefore, the inhibitory RNA agent of the present disclosure can have a nucleotide sequence that is consistent with the following: Any of the target regions has at least 85% complement (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)), at least 86 % (e.g., at least 86%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)), at least 87% (e.g., at least 87%, 90%, 95 %, 96%, 97%, 98%, 99% or more (e.g., 100%)), at least 88% (e.g., at least 88%, 90%, 95%, 96%, 97%, 98%, 99 % or more (e.g., 100%)), at least 89% (e.g., at least 89%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) or At least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) identical to: SEQ ID NO: 164 to SEQ ID NO: 174. Identical to all Nucleotides where the complementary sequences of the aligned Grik2 mRNA sequences are not 100% identical may be wobble nucleotides.
由針對 Grik2轉錄本上之特定區域設計的反義 RNA 介導的脫靶效應之概率可以使用任何數量的公開可用算法來測量。例如,可以使用線上工具 siSPOTR (「siRNA 序列脫靶概率降低」,可在 world-wide-web.sispotr.icts.uiowa.edu/sispotr/index.html_ 獲得)。 The probability of off-target effects mediated by antisense RNA designed to target specific regions on the Grik2 transcript can be measured using any number of publicly available algorithms. For example, one can use the online tool siSPOTR ("SiRNA Sequence Off-Target Probability Reduction", available at world-wide-web.sispotr.icts.uiowa.edu/sispotr/index.html_).
本文所揭示的抑制性 RNA 劑靶向編碼 GluK2 蛋白 (例如,包括 SEQ ID NO: 151 至 SEQ ID NO: 163 中之任一者的 GluK2 蛋白,或至少包括 SEQ ID NO: 151 之胺基酸 1 至 509 的 GluK2 蛋白) 的 mRNA。編碼 GluK2 蛋白的 mRNA 可包括編碼多肽的多核苷酸,該多肽相對於具有以下中之任一者之序列的多肽含有一個或多個胺基酸取代,諸如一個或多個保留式胺基酸取代 (例如,1、2、3、4、5、6、7、8、9 或10 個或更多個胺基酸取代,諸如 1、2、3、4、5、6、7、8、9 或 10 個或更多個保留式胺基酸取代):SEQ ID NO: 151 至 SEQ ID NO: 163。 Grik2 蛋白及編碼它的多核苷酸 Inhibitory RNA agents disclosed herein target a GluK2 protein encoding a GluK2 protein (eg, a GluK2 protein including any one of SEQ ID NO: 151 to SEQ ID NO: 163, or at least amino acid 1 including SEQ ID NO: 151 to 509 of GluK2 protein) mRNA. An mRNA encoding a GluK2 protein may include a polynucleotide encoding a polypeptide that contains one or more amino acid substitutions, such as one or more retaining amino acid substitutions, relative to a polypeptide having the sequence of any of the following (For example, 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 or more amino acid substitutions such as 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 or more retained amino acid substitutions): SEQ ID NO: 151 to SEQ ID NO: 163. Grik2 protein and polynucleotide encoding it
本文所揭示的 Grik2抑制性 RNA 劑可以藉由使用例如生物資訊學工具以 Grik2mRNA 之序列為起點來設計。 Grik2mRNA 序列可在 NCBI Gene ID NO: 2898 中找到。在另一個實例中,編碼 SEQ ID NO: 151 的多核苷酸序列,編碼 SEQ ID NO: 151 之連續胺基酸 1 至 509 的多核苷酸序列,或編碼以下中之任一者的胺基酸序列的多核苷酸序列:SEQ ID NO: 151 (UniProtKB Q13002-1)、SEQ ID NO: 152 (UniProtKB Q13002-2)、SEQ ID NO: 153 (UniProtKB Q13002-3)、SEQ ID NO: 154 (UniProtKB Q13002-4)、SEQ ID NO: 155 (UniProtKB Q13002-5)、SEQ ID NO: 156 (UniProtKB Q13002-6)、SEQ ID NO: 157 (UniProtKB Q13002-7)、SEQ ID NO: 158 (NCBI 登錄號:NP_001104738.2)、SEQ ID NO: 159 (NCBI 登錄號:NP_034479.3)、SEQ ID NO: 160 (NCBI 登錄號:NP_034479.3)、SEQ ID NO: 161 (NCBI 登錄號:XP_014992481.1)、SEQ ID NO: 162 (NCBI 登錄號:XP_014992483.1) 及 SEQ ID NO: 163 (NCBI 登錄號:NP_062182.1) 的多核苷酸序列,可作為基礎用於設計靶向編碼 GluK2 蛋白的 mRNA 的核酸。編碼 GluK2 受體的多核苷酸序列可選自以下中之任一者:SEQ ID NO: 164-174。 Grik2 inhibitory RNA agents disclosed herein can be designed starting from the sequence of Grik2 mRNA using, for example, bioinformatics tools. The Grik2 mRNA sequence can be found at NCBI Gene ID NO: 2898. In another example, a polynucleotide sequence encoding SEQ ID NO: 151, a polynucleotide sequence encoding contiguous amino acids 1 to 509 of SEQ ID NO: 151, or an amino acid encoding any of the following Polynucleotide sequence of the sequence: SEQ ID NO: 151 (UniProtKB Q13002-1), SEQ ID NO: 152 (UniProtKB Q13002-2), SEQ ID NO: 153 (UniProtKB Q13002-3), SEQ ID NO: 154 (UniProtKB Q13002-4), SEQ ID NO: 155 (UniProtKB Q13002-5), SEQ ID NO: 156 (UniProtKB Q13002-6), SEQ ID NO: 157 (UniProtKB Q13002-7), SEQ ID NO: 158 (NCBI accession no. : NP_001104738.2), SEQ ID NO: 159 (NCBI accession number: NP_034479.3), SEQ ID NO: 160 (NCBI accession number: NP_034479.3), SEQ ID NO: 161 (NCBI accession number: XP_014992481.1) , the polynucleotide sequences of SEQ ID NO: 162 (NCBI accession number: nucleic acids. The polynucleotide sequence encoding GluK2 receptor can be selected from any of the following: SEQ ID NO: 164-174.
GluK2 多肽可具有以下之胺基酸序列:SEQ ID NO: 151,或可為其與以下之胺基酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的變體:SEQ ID NO: 151,其如下所示 (UniProt Q13002-1;GRIK2_HUMAN 麩胺酸受體促離子型,紅藻氨酸 2): MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRSFCSAMVEELRMSLKCQRRLKHKPQAPVIVKTEEVINMHTFNDRRLPGKETMA (SEQ ID NO: 151) The GluK2 polypeptide may have the following amino acid sequence: SEQ ID NO: 151, or may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%) the following amino acid sequence. , 98%, 99% or more (e.g., 100%)) Variants of sequence identity: SEQ ID NO: 151, which is shown below (UniProt Q13002-1; GRIK2_HUMAN glutamate receptor ionotropic, red Alginate 2): MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAK PLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPY VLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAK QTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRSFCSAMVEELRMSLKCQRRLKHKPQAPVIVKTEEVIN MHTFNDRRLPKETMA (SEQ ID NO: 151)
GluK2 多肽可具有以下之胺基酸序列:SEQ ID NO: 152,或可為其與以下之胺基酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的變體:SEQ ID NO: 152,其如下所示 (UniProt Q13002-2;麩胺酸受體促離子型,紅藻氨酸 2 之 GRIK2_HUMAN 同功型 2): MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKESSIWLVPPYHPDTV (SEQ ID NO: 152) The GluK2 polypeptide may have the following amino acid sequence: SEQ ID NO: 152, or may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%) the following amino acid sequence. , 98%, 99% or more (e.g., 100%)) Variants of sequence identity: SEQ ID NO: 152, which is shown below (UniProt Q13002-2; glutamate receptor ionotropic species, red algae GRIK2_HUMAN isoform of amino acid 2): MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAK PLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPY VLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAK QTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKESSIWLVPPYHPDTV (SEQ ID NO: 152)
GluK2 多肽可具有以下之胺基酸序列:SEQ ID NO: 153,或可為其與以下之胺基酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的變體:SEQ ID NO: 153,其如下所示 (UniProt Q13002-3;麩胺酸受體促離子型,紅藻氨酸 2 之 GRIK2_HUMAN 同功型 3): MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARF (SEQ ID NO: 153) The GluK2 polypeptide may have the following amino acid sequence: SEQ ID NO: 153, or may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%) the following amino acid sequence. , 98%, 99% or more (e.g., 100%)) Variants of sequence identity: SEQ ID NO: 153, which is shown below (UniProt Q13002-3; glutamate receptor ionotropic species, red algae GRIK2_HUMAN isoform of amino acid 2 3): MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAK PLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPY VLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARF (SEQ ID NO: 153)
GluK2 多肽可具有以下之胺基酸序列:SEQ ID NO: 154,或可為其與以下之胺基酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的變體:SEQ ID NO: 154,其如下所示 (UniProt Q13002-4;麩胺酸受體促離子型,紅藻氨酸 2 之 GRIK2_HUMAN 同功型 4): MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRSFCSAMVEELRMSLKCQRRLKHKPQAPVIVKTEEVINMHTFNDRRLPGKETMA (SEQ ID NO: 154) The GluK2 polypeptide may have the following amino acid sequence: SEQ ID NO: 154, or may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%) the following amino acid sequence. , 98%, 99% or more (e.g., 100%)) Variants of sequence identity: SEQ ID NO: 154, which is shown below (UniProt Q13002-4; glutamate receptor ionotropic species, red algae Acid 2 GRIK2_HUMAN isoform 4): MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAK PLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPY VLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNC NLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRSFCSAMVEELRMSLKCQRRLKHKPQAPVIVKTEEVINMHTFNDRRLPGKETMA (SEQ ID NO: 154)
GluK2 多肽可具有以下之胺基酸序列:SEQ ID NO: 155,或可為其與以下之胺基酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的變體:SEQ ID NO: 155,其如下所示 (UniProt Q13002-5;麩胺酸受體促離子型,紅藻氨酸 2 之 GRIK2_HUMAN 同功型 5): MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRAKTKLPQDYVFLPILESVSISTVLSSSPSSSSLSSCS (SEQ ID NO: 155) The GluK2 polypeptide may have the following amino acid sequence: SEQ ID NO: 155, or may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%) the following amino acid sequence. , 98%, 99% or more (e.g., 100%)) Variants of sequence identity: SEQ ID NO: 155, which is shown below (UniProt Q13002-5; glutamate receptor ionotropic species, red algae GRIK2_HUMAN isoform of amino acid 2): MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAK PLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPY VLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAK Question CS (SEQ ID NO: 155)
GluK2 多肽可具有以下之胺基酸序列:SEQ ID NO: 156,或可為其與以下之胺基酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的變體:SEQ ID NO: 156,其如下所示 (UniProt Q13002-6;麩胺酸受體促離子型,紅藻氨酸 2 之 GRIK2_HUMAN 同功型 6): MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKESSIWLVPPYHPDTV (SEQ ID NO: 156) The GluK2 polypeptide may have the following amino acid sequence: SEQ ID NO: 156, or may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%) the following amino acid sequence. , 98%, 99% or more (e.g., 100%)) Variants of sequence identity: SEQ ID NO: 156, which is shown below (UniProt Q13002-6; glutamate receptor ionotropic species, red algae GRIK2_HUMAN isoform of amino acid 2): MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAK PLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPY VLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNA QLEKESSIWLVPPYHPDTV (SEQ ID NO: 156)
GluK2 多肽可具有以下之胺基酸序列:SEQ ID NO: 157,或可為其與以下之胺基酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的變體:SEQ ID NO: 157,其如下所示 (UniProt Q13002-7;麩胺酸受體促離子型,紅藻氨酸 2 之 GRIK2_HUMAN 同功型 7): MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRAKTKLPQDYVFLPILESVSISTVLSSSPSSSSLSSCS (SEQ ID NO: 157) The GluK2 polypeptide may have the following amino acid sequence: SEQ ID NO: 157, or may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%) the following amino acid sequence. , 98%, 99% or more (e.g., 100%)) Variants of sequence identity: SEQ ID NO: 157, which is shown below (UniProt Q13002-7; glutamate receptor ionotropic species, red algae GRIK2_HUMAN isoform of amino acid 2): MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAK PLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPY VLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKSVLVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRAKTKLPQDYV FLPILESVSISTVLSSSPSSSSLSSCS (SEQ ID NO: 157)
GluK2 多肽可具有以下之胺基酸序列:SEQ ID NO: 158,或可為其與以下之胺基酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的變體:SEQ ID NO: 158,其如下所示 (NP_001104738.2;麩胺酸受體促離子型,紅藻氨酸 2 之 GRIK2_MOUSE 同功型 1 前驅體): MKIISPVLSNLVFSRSIKVLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPSSGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRSFCSAMVEELRMSLKCQRRLKHKPQAPVIVKTEEVINMHTFNDRRLPGKETMA (SEQ ID NO: 158) The GluK2 polypeptide may have the following amino acid sequence: SEQ ID NO: 158, or may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%) the following amino acid sequence. , 98%, 99% or more (e.g., 100%)) Variants of sequence identity: SEQ ID NO: 158, which is shown below (NP_001104738.2; glutamate receptor ionotropic, kainate GRIK2_MOUSE of Acid 2 (same type 1 precursor): MKIISPVLSNLVFSRSIKVLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDA KPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMTEYYHYIFFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPSSGLNMTESQKGKPANITDSLSNRSLIVTTILEE PYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTMESPIDSADD LAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRSFCSAMVEELRMSLKCQRRLKHKPQAPVIVKTE EVINMHTFNDRRLPGKETMA (SEQ ID NO: 158)
GluK2 多肽可具有以下之胺基酸序列:SEQ ID NO: 159,或可為其與以下之胺基酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的變體:SEQ ID NO: 159,其如下所示 (NP_034479.3;麩胺酸受體促離子型,紅藻氨酸 2 之 GRIK2_MOUSE 同功型 2 前驅體): MKIISPVLSNLVFSRSIKVLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPSSGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKESSIWLVPPYHPDTV (SEQ ID NO: 159) The GluK2 polypeptide may have the following amino acid sequence: SEQ ID NO: 159, or may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%) the following amino acid sequence. , 98%, 99% or more (e.g., 100%)) Variants of sequence identity: SEQ ID NO: 159, which is shown below (NP_034479.3; glutamate receptor ionotropic, kainate Acid 2's GRIK2_MOUSE (same type 2 precursor): MKIISPVLSNLVFSRSIKVLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDA KPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMTEYYHYIFFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPSSGLNMTESQKGKPANITDSLSNRSLIVTTILEE PYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTMESPIDSADD LAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKESSIWLVPPYHPDTV (SEQ ID NO: 159)
GluK2 多肽可具有以下之胺基酸序列:SEQ ID NO: 160,或可為其與以下之胺基酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的變體:SEQ ID NO: 160,其如下所示 (NP_001345795.2;麩胺酸受體促離子型,紅藻氨酸 2 之 GRIK2_MOUSE 同功型 1 前驅體): MKIISPVLSNLVFSRSIKVLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPSSGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRSFCSAMVEELRMSLKCQRRLKHKPQAPVIVKTEEVINMHTFNDRRLPGKETMA (SEQ ID NO: 160) The GluK2 polypeptide may have the following amino acid sequence: SEQ ID NO: 160, or may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%) the following amino acid sequence. , 98%, 99% or more (e.g., 100%)) Variants of sequence identity: SEQ ID NO: 160, which is shown below (NP_001345795.2; glutamate receptor ionotropic, kainate GRIK2_MOUSE of Acid 2 (same type 1 precursor): MKIISPVLSNLVFSRSIKVLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDA KPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMTEYYHYIFFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPSSGLNMTESQKGKPANITDSLSNRSLIVTTILEE PYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTMESPIDSADD LAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRSFCSAMVEELRMSLKCQRRLKHKPQAPVIVKTE EVINMHTFNDRRLPGKETMA (SEQ ID NO: 160)
GluK2 多肽可具有以下之胺基酸序列:SEQ ID NO: 161,或可為其與以下之胺基酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的變體:SEQ ID NO: 161,其如下所示 (XP_014992481.1;GRIK2_RHESUS MACAQUE 同功型 X1,麩胺酸受體促離子型,紅藻氨酸 2): MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRSFCSAMVEELRMSLKCQRRLKHKPQAPVIVKTEEVINMHTFNDRRLPGKETMA (SEQ ID NO: 161) The GluK2 polypeptide may have the following amino acid sequence: SEQ ID NO: 161, or may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%) the following amino acid sequence. , 98%, 99% or more (e.g., 100%)) Variants of sequence identity: SEQ ID NO: 161, which is as follows (XP_014992481.1; GRIK2_RHESUS MACAQUE isoform X1, glutamate receptor Ionotropic, kainic acid 2): MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAK PLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPY VLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAK QTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRSFCSAMVEELRMSLKCQRRLKHKPQAPVIVKTEEVIN MHTFNDRRLPKETMA (SEQ ID NO: 161)
GluK2 多肽可具有以下之胺基酸序列:SEQ ID NO: 162,或可為其與以下之胺基酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的變體:SEQ ID NO: 162,其如下所示 (XP_014992483.1;GRIK2_RHESUS MACAQUE 同功型 X1,麩胺酸受體促離子型,紅藻氨酸 2): MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRSFCSAMVEELRMSLKCQRRLKHKPQAPVIVKTEEVINMHTFNDRRLPGKETMA (SEQ ID NO: 162) The GluK2 polypeptide may have the following amino acid sequence: SEQ ID NO: 162, or may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%) the following amino acid sequence. , 98%, 99% or more (e.g., 100%)) Variants of sequence identity: SEQ ID NO: 162, which is as follows (XP_014992483.1; GRIK2_RHESUS MACAQUE isoform X1, glutamate receptor Ionotropic, kainic acid 2): MKIIFPILSNPVFRRTVKLLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAK PLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPY VLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAK QTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRSFCSAMVEELRMSLKCQRRLKHKPQAPVIVKTEEVIN MHTFNDRRLPKETMA (SEQ ID NO: 162)
GluK2 多肽可具有以下之胺基酸序列:SEQ ID NO: 163,或可為其與以下之胺基酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的變體:SEQ ID NO: 163,其如下所示 (NP_062182.1;麩胺酸受體促離子型,紅藻氨酸 2 之 GRIK2_RAT 前驅體): MKIISPVLSNLVFSRSIKVLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVLLACLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMRQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRSFCSAMVEELRMSLKCQRRLKHKPQAPVIVKTEEVINMHTFNDRRLPGKETMA (SEQ ID NO: 163) The GluK2 polypeptide may have the following amino acid sequence: SEQ ID NO: 163, or may have at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%) the following amino acid sequence. , 98%, 99% or more (e.g., 100%)) Variants of sequence identity: SEQ ID NO: 163, which is shown below (NP_062182.1; glutamate receptor ionotropic, kainate Acid 2 GRIK2_RAT precursor): MKIISPVLSNLVFSRSIKVLLCLLWIGYSQGTTHVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDA KPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMTEYYHYIFFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEE PYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVLLACLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMRQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSA DDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRSFCSAMVEELRMSLKCQRRLKHKPQAPVIVK TEEVINMHTFNDRRLPGKETMA (SEQ ID NO: 163)
Grik2mRNA 可為含有 5' 及 3' 非轉譯區域 (UTR) 並具有 SEQ ID NO: 164 之核酸序列,或可為其變體,該變體與以下之核酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 164 (RefSeq NM_021956.1:4592 智人麩胺酸促離子型受體紅藻氨酸型次單元 2 (GRIK2),轉錄變體 1,mRNA),如表 10 中所示。 Grik2 mRNA can be a nucleic acid sequence containing 5' and 3' untranslated regions (UTR) and having SEQ ID NO: 164, or a variant thereof that is at least 85% identical to the following nucleic acid sequence (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) Sequence identity: SEQ ID NO: 164 (RefSeq NM_021956.1:4592 Homo sapiens glutamine Acid ionotropic receptor kainate-type subunit 2 (GRIK2), transcript variant 1, mRNA), as shown in Table 10.
Grik2mRNA 可為具有 SEQ ID NO: 165 之核酸序列的多核苷酸,或可為其變體,該變體與以下之核酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 165 (RefSeq NM_021956.4:294-3020 智人麩胺酸促離子型受體紅藻氨酸型次單元 2 (GRIK2),轉錄變體 1,mRNA),如表 10 中所示。 Grik2 mRNA may be a polynucleotide having the nucleic acid sequence of SEQ ID NO: 165, or may be a variant thereof that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) Sequence identity: SEQ ID NO: 165 (RefSeq NM_021956.4:294-3020 Homo sapiens glutamate ionotropic receptor red GRIK2 (GRIK2), transcript variant 1, mRNA), as shown in Table 10.
另外地或替代地, Grik2mRNA 可為具有 SEQ ID NO: 166 之核酸序列的多核苷酸,或可為其變體,該變體與以下之核酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 166 (RefSeq NM_175768.3:294-2903 智人麩胺酸促離子型受體紅藻氨酸型次單元 2 (GRIK2),轉錄變體 2,mRNA),如表 10 中所示。 Additionally or alternatively, Grik2 mRNA can be a polynucleotide having the nucleic acid sequence of SEQ ID NO: 166, or can be a variant thereof that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 166 (RefSeq NM_175768.3:294-2903 Homo sapiens glutamate Ionotropic receptor kainate-type subunit 2 (GRIK2), transcript variant 2, mRNA), as shown in Table 10.
另外地或替代地, Grik2mRNA 可為具有 SEQ ID NO: 167 之核酸序列的多核苷酸,或可為其變體,該變體與以下之核酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 167 (RefSeq NM_001166247.1:294-2972 智人麩胺酸促離子型受體紅藻氨酸型次單元 2 (GRIK2),轉錄變體 3,mRNA),如表 10 中所示。 Additionally or alternatively, Grik2 mRNA can be a polynucleotide having the nucleic acid sequence of SEQ ID NO: 167, or can be a variant thereof that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 167 (RefSeq NM_001166247.1:294-2972 Homo sapiens glutamate Ionotropic receptor kainate-type subunit 2 (GRIK2), transcript variant 3, mRNA), as shown in Table 10.
另外地或替代地, Grik2mRNA 可為具有 SEQ ID NO: 168 之核酸序列的多核苷酸,或可為其變體,該變體與以下之核酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 168 (RefSeq NM_001111268.2 家鼷鼠 ( Mus musculus) 麩胺酸促離子型受體紅藻氨酸次單元 2 (GRIK2),轉錄變體 4,mRNA),如下所示。 Additionally or alternatively, Grik2 mRNA may be a polynucleotide having the nucleic acid sequence of SEQ ID NO: 168, or may be a variant thereof that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 168 (RefSeq NM_001111268.2 House Mole ( Mus musculus ) Glutamine Acid ionotropic receptor kainate subunit 2 (GRIK2), transcript variant 4, mRNA), is shown below.
另外地或替代地, Grik2mRNA 可為具有 SEQ ID NO: 169 之核酸序列的多核苷酸,或可為其變體,該變體與以下之核酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 169 (RefSeq NM_010349.4 家鼷鼠麩胺酸促離子型受體紅藻氨酸次單元 2 (GRIK2),轉錄變體 5,mRNA),如表 10 中所示。 Additionally or alternatively, Grik2 mRNA may be a polynucleotide having the nucleic acid sequence of SEQ ID NO: 169, or may be a variant thereof that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 169 (RefSeq NM_010349.4 House Mole Glutamate Ionotropic Receptor kainate subunit 2 (GRIK2), transcript variant 5, mRNA), as shown in Table 10.
另外地或替代地, Grik2mRNA 可為具有 SEQ ID NO: 170 之核酸序列的多核苷酸,或可為其變體,該變體與以下之核酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 170 (RefSeq NM_ 001358866 家鼷鼠麩胺酸促離子型受體紅藻氨酸次單元 2 (GRIK2),轉錄變體 6,mRNA),如表 10 中所示。 Additionally or alternatively, Grik2 mRNA may be a polynucleotide having the nucleic acid sequence of SEQ ID NO: 170, or may be a variant thereof that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 170 (RefSeq NM_ 001358866 House Mole Glutamate Ionotropic Receptor body kainate subunit 2 (GRIK2), transcript variant 6, mRNA), as shown in Table 10.
另外地或替代地, Grik2mRNA 可為具有 SEQ ID NO: 171 之核酸序列的多核苷酸,或可為其變體,該變體與以下之核酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 171 (RefSeq XM_015136995.2 恆河獼猴 ( Macaca mulatta) 麩胺酸促離子型受體紅藻氨酸次單元 2 (GRIK2),轉錄變體 7,mRNA),如表 10 中所示。 Additionally or alternatively, Grik2 mRNA can be a polynucleotide having the nucleic acid sequence of SEQ ID NO: 171, or can be a variant thereof that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 171 (RefSeq XM_015136995.2 Rhesus macaque ( Macaca mulatta ) Glutamine Acid ionotropic receptor kainate subunit 2 (GRIK2), transcript variant 7, mRNA), as shown in Table 10.
另外地或替代地, Grik2mRNA 可為具有 SEQ ID NO: 172 之核酸序列的多核苷酸,或可為其變體,該變體與以下之核酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 172 (RefSeq XM_015136997.2 恆河獼猴麩胺酸促離子型受體紅藻氨酸次單元 2 (GRIK2),轉錄變體 X1,mRNA),如表 10 中所示。 Additionally or alternatively, Grik2 mRNA may be a polynucleotide having the nucleic acid sequence of SEQ ID NO: 172, or may be a variant thereof that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) Sequence identity: SEQ ID NO: 172 (RefSeq XM_015136997.2 Rhesus macaque glutamate ionotropic Receptor kainate subunit 2 (GRIK2), transcript variant X1, mRNA), as shown in Table 10.
另外地或替代地, Grik2mRNA 可為具有 SEQ ID NO: 173 之核酸序列的多核苷酸,或可為其變體,該變體與以下之核酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 173 (RefSeq NM_019309.2 溝鼠 ( Rattus norvegicus) 麩胺酸促離子型受體紅藻氨酸次單元 2 (GRIK2),mRNA),如表 10 中所示。 Additionally or alternatively, Grik2 mRNA can be a polynucleotide having the nucleic acid sequence of SEQ ID NO: 173, or can be a variant thereof that is at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 173 (RefSeq NM_019309.2 Rattus norvegicus glutamate-stimulating Ionotropic receptor kainate subunit 2 (GRIK2), mRNA), as shown in Table 10.
另外地或替代地, Grik2mRNA 包括對應於成熟 GluK2 肽編碼序列並具有 SEQ ID NO: 174 之核酸序列或其變體的多核苷酸,該變體與 SEQ ID NO: 174 之核酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性,如表 10 中所示。 Additionally or alternatively, Grik2 mRNA includes a polynucleotide corresponding to the mature GluK2 peptide coding sequence and having the nucleic acid sequence of SEQ ID NO: 174 or a variant thereof that shares at least 85% of the nucleic acid sequence of SEQ ID NO: 174 % (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) sequence identity, as shown in Table 10.
根據所揭示的方法及組成物, Grik2mRNA 可包括 5' UTR,諸如由具有 SEQ ID NO: 175 之核酸序列或其變體的多核苷酸編碼的 5' UTR,該變體與 SEQ ID NO: 175 之核酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性,如表 10 中所示。 According to the disclosed methods and compositions, Grik2 mRNA may include a 5' UTR, such as a 5' UTR encoded by a polynucleotide having the nucleic acid sequence of SEQ ID NO: 175 or a variant thereof that is identical to SEQ ID NO: 175 nucleic acid sequences having at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity, as shown in Table 10 shown.
Grik2mRNA 亦可包括 3' UTR,諸如由具有 SEQ ID NO: 176 之核酸序列或其變體的多核苷酸編碼的 3' UTR,該變體與 SEQ ID NO: 176 之核酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性,如表 10 中所示。 Grik2 mRNA may also include a 3' UTR, such as a 3' UTR encoded by a polynucleotide having the nucleic acid sequence of SEQ ID NO: 176 or a variant thereof that is at least 85% identical to the nucleic acid sequence of SEQ ID NO: 176 (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) sequence identity, as shown in Table 10.
此外, Grik2mRNA 可包括編碼 Grik2訊息肽序列的多核苷酸,例如,由 SEQ ID NO: 177 之核酸序列或其變體的多核苷酸編碼的訊息肽序列,該變體與 SEQ ID NO: 177 之核酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性,如表 10 中所示。 In addition, Grik2 mRNA may include a polynucleotide encoding a Grik2 message peptide sequence, for example, a message peptide sequence encoded by a polynucleotide of the nucleic acid sequence of SEQ ID NO: 177 or a variant thereof, which variant is identical to SEQ ID NO: 177 The nucleic acid sequence has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) sequence identity, as set forth in Table 10 Show.
此外,本揭露之抑制性多核苷酸能夠在
Grik2轉錄本之外顯子 1 至 16 (對應於 SEQ ID NO: 177 至 SEQ ID NO: 193) 中之任一者內結合,該等外顯子在下表 10 中描述。
表 10: 編碼標靶 Grik2mRNA
序列的 cDNA 序列
本文所揭示的核酸劑之有效細胞內濃度可以經由編碼該藥劑的多核苷酸至穩定表現來實現 (例如,藉由整合到哺乳動物細胞之核或粒線體基因體中)。該核酸為靶向 Grik2mRNA 的抑制性 RNA (例如,本文所揭示的抑制性 RNA 劑)。為了將此類外源核酸引入哺乳動物細胞內,可將該藥劑之多核苷酸序列併入載體中。可以藉由多種方法將載體引入細胞內,包括轉形、轉染、直接攝取、射彈轟擊,以及藉由將載體包裹在脂質體中。將細胞轉染或轉形的合適方法之實例為磷酸鈣沉澱、電穿孔、顯微注射、感染、脂轉染及直接攝取。此類方法在例如以下文獻中更詳細地描述:Green 等人,Molecular Cloning: A Laboratory Manual,第四版 (Cold Spring Harbor University Press, New York (2014));及 Ausubel 等人,Current Protocols in Molecular Biology (John Wiley & Sons, New York (2015)),其各自之揭露以引用方式併入本文。 Effective intracellular concentrations of the nucleic acid agents disclosed herein can be achieved through stable expression of the polynucleotide encoding the agent (eg, by integration into the nuclear or mitochondrial genome of a mammalian cell). The nucleic acid is an inhibitory RNA that targets Grik2 mRNA (eg, an inhibitory RNA agent disclosed herein). To introduce such exogenous nucleic acids into mammalian cells, the polynucleotide sequence of the agent can be incorporated into a vector. Vectors can be introduced into cells by a variety of methods, including transformation, transfection, direct uptake, projectile bombardment, and by encapsulating the vector in liposomes. Examples of suitable methods for transfecting or transforming cells are calcium phosphate precipitation, electroporation, microinjection, infection, lipofection and direct uptake. Such methods are described in more detail in, for example, Green et al., Molecular Cloning: A Laboratory Manual, 4th ed. (Cold Spring Harbor University Press, New York (2014)); and Ausubel et al., Current Protocols in Molecular Biology (John Wiley & Sons, New York (2015)), whose respective disclosures are incorporated herein by reference.
亦可藉由使含有編碼此類藥劑的多核苷酸的載體靶向細胞膜磷脂質,將本文所揭示的藥劑引入哺乳動物細胞內。例如,藉由將載體分子連接至 VSV-G 蛋白 (一種對全部細胞膜磷脂質皆具有親和力的病毒蛋白),可使載體靶向細胞膜之細胞外表面上的磷脂質。因此,可以使用本領域的習用及常規方法產生構建體。The agents disclosed herein can also be introduced into mammalian cells by targeting a vector containing a polynucleotide encoding such agent to cell membrane phospholipids. For example, the vector can be targeted to phospholipids on the extracellular surface of the cell membrane by linking the vector molecule to the VSV-G protein, a viral protein with affinity for all cell membrane phospholipids. Accordingly, constructs may be generated using methods customary and routine in the art.
除了實現高轉錄率及轉譯率外,外源多核苷酸在哺乳動物細胞內的穩定表現可藉由將含有該基因的多核苷酸整合到該哺乳動物細胞之核基因體中來實現。已經開發了多種用於將編碼外源蛋白質的多核苷酸輸送並整合到哺乳動物細胞之核 DNA 中的載體。表現載體之實例在例如 WO 1994/011026 中揭示並且以引用方式併入本文。用於本文所述的組成物及方法中的表現載體含有編碼 Grik2靶向抑制性 RNA 試劑的多核苷酸序列以及例如用於表現此等藥劑及/或將此等多核苷酸序列整合到哺乳動物細胞之基因體中的額外序列元件。可以使用的某些載體包括含有調節序列的質體,諸如引導基因轉錄的啟動子及增強子區域。其他有用的載體含有提高此等基因之轉譯速率或增強導致基因轉錄的 mRNA 之穩定性或核輸出的多核苷酸序列。此等序列元件包括例如 5' 及 3' UTR 區域、IRES 以及多腺苷酸化訊息序列位點,以便引導表現載體上攜帶之基因的有效轉錄。適合與本文所述的組成物及方法合用的表現載體亦可含有編碼標記的多核苷酸,用於選擇含有此類載體的細胞。合適之標記的實例為編碼對於抗生素諸如胺苄青黴素、氯黴素、康黴素、諾爾絲菌素之抗性的基因。 調節序列 In addition to achieving high transcription and translation rates, the stable expression of exogenous polynucleotides in mammalian cells can be achieved by integrating the polynucleotide containing the gene into the nuclear genome of the mammalian cells. A variety of vectors have been developed for the delivery and integration of polynucleotides encoding foreign proteins into the nuclear DNA of mammalian cells. Examples of expression vehicles are disclosed, for example, in WO 1994/011026 and incorporated herein by reference. Expression vectors for use in the compositions and methods described herein contain polynucleotide sequences encoding Grik2- targeting inhibitory RNA agents and, for example, are used to express such agents and/or integrate such polynucleotide sequences into mammals. Additional sequence elements in the genome of a cell. Some vectors that can be used include plasmids containing regulatory sequences, such as promoter and enhancer regions that direct gene transcription. Other useful vectors contain polynucleotide sequences that increase the translation rate of such genes or enhance the stability or nuclear export of the mRNA responsible for gene transcription. Such sequence elements include, for example, 5' and 3' UTR regions, IRES, and polyadenylation message sequence sites to direct efficient transcription of the gene carried on the expression vector. Expression vectors suitable for use with the compositions and methods described herein may also contain polynucleotides encoding markers for selection of cells containing such vectors. Examples of suitable markers are genes encoding resistance to antibiotics such as ampicillin, chloramphenicol, conmycin, nourseothricin. regulatory sequence
本文所揭示的抑制性 RNA 劑可以足夠高的水平表現以引發治療益處。據此,多核苷酸表現可由能夠驅動所揭示的抑制性 RNA 試劑之穩健表現的啟動子序列介導。根據本文所揭示的方法及組成物,啟動子可為異源啟動子。如本文所用,術語「異源啟動子」指代在自然界中未發現與給定編碼序列可操作地連接的啟動子。有用的異源控制序列通常包括彼等衍生自編碼哺乳動物或病毒基因的序列者。The inhibitory RNA agents disclosed herein can perform at sufficiently high levels to elicit therapeutic benefit. Accordingly, polynucleotide expression may be mediated by promoter sequences capable of driving robust expression of the disclosed inhibitory RNA agents. According to the methods and compositions disclosed herein, the promoter can be a heterologous promoter. As used herein, the term "heterologous promoter" refers to a promoter not found in nature operably linked to a given coding sequence. Useful heterologous control sequences generally include those derived from sequences encoding mammalian or viral genes.
可以使用異源啟動子及其他控制元件兩者,諸如 CNS 特異性及誘導型啟動子、增強子等。啟動子可完全地源自天然基因 (例如, Grik2基因) 或可由源自不同天然存在之啟動子的不同元件組成。替代地,啟動子可包括合成的多核苷酸序列。不同的啟動子將引導基因在不同組織或細胞類型中、或在不同的發育階段、或因應於不同的環境條件或因應於藥物或轉錄輔因子之存在或不存在的表現。普遍存在的、細胞類型特異性的、組織特異性的、發育階段特異性的及條件啟動子,例如,藥物反應性啟動子 (例如,四環素反應性啟動子),為本領域中習知的。 Both heterologous promoters and other control elements can be used, such as CNS-specific and inducible promoters, enhancers, and the like. The promoter may be derived entirely from a native gene (eg, the Grik2 gene) or may be composed of different elements derived from different naturally occurring promoters. Alternatively, the promoter may comprise a synthetic polynucleotide sequence. Different promoters will direct the expression of genes in different tissues or cell types, or at different stages of development, or in response to different environmental conditions, or in response to the presence or absence of drugs or transcription cofactors. Ubiquitous, cell type-specific, tissue-specific, developmental stage-specific and conditional promoters, eg, drug-responsive promoters (eg, tetracycline-responsive promoters), are well known in the art.
在哺乳動物系統中,存在三種啟動子,且它們為構建表現載體的候選啟動子:(i) 控制大核醣體 RNA 之轉錄的 Pol I 啟動子;(ii) 控制 mRNA (轉譯為蛋白質)、小核 RNA (snRNA) 及內源性 microRNA (例如,來自前驅 mRNA 的內含子) 之轉錄的 Pol II 啟動子;(iii) 及獨特地轉錄小非編碼 RNA 的 Pol III 啟動子。當設計用於體內 RNA 表現的構建體時,該等啟動子各自皆具有需要考慮的優點及限制性。例如,Pol III 啟動子可用於在活體內從 DNA 模板合成抑制性 RNA 劑 (例如,siRNA、shRNA、miRNA 或 shmiRNA)。為了更好地控制組織特異性表現,可以使用 Pol II 啟動子 (例如,對於 miRNA 之轉錄)。當使用 Pol II 啟動子時,可以省略轉譯起始訊息,使得 RNA 作為 siRNA、shRNA 或 miRNA 發揮作用並且不在活體內轉譯為肽。In mammalian systems, three promoters exist and are candidate promoters for constructing expression vectors: (i) the Pol I promoter that controls the transcription of large ribosomal RNA; (ii) the Pol I promoter that controls mRNA (translation into protein), small Pol II promoters that transcribe nuclear RNAs (snRNAs) and endogenous microRNAs (eg, from introns in pre-mRNAs); (iii) and Pol III promoters that uniquely transcribe small non-coding RNAs. Each of these promoters has advantages and limitations that need to be considered when designing constructs for in vivo RNA expression. For example, the Pol III promoter can be used to synthesize inhibitory RNA agents (e.g., siRNA, shRNA, miRNA, or shmiRNA) from DNA templates in vivo. For better control of tissue-specific expression, Pol II promoters can be used (e.g., for miRNA transcription). When using the Pol II promoter, the translation initiation message can be omitted, allowing the RNA to function as siRNA, shRNA, or miRNA and not be translated into peptides in vivo.
適用於本文所述的組成物及方法的多核苷酸亦包括彼等編碼抑制性 RNA 劑者,該等抑制性 RNA 劑在哺乳動物調節序列 (諸如啟動子序列及視情況選用的增強子序列) 的控制下靶向 Grik2mRNA。可用於所揭示的抑制性 RNA 劑在哺乳動物細胞中之表現的示例性啟動子包括細胞類型特異性啟動子。例如, Grik2抑制性 RNA 劑的神經元特異性表現可以使用神經元特異性啟動子來賦予,諸如人類突觸蛋白 1 (hSyn) 啟動子或 Ca 2+/攜鈣蛋白依賴性蛋白激酶 II (CaMKII) 啟動子。hSyn 及 CaMKII 啟動子之變體先前已在以下文獻中描述:Hioki 等人 Gene Therapy14:872-82 (2007) 及 Sauerwald 等人 J. Biol. Chem.265(25):14932-7 (1990),其等之揭露以引用方式併入本文,因為它們涉及特定的 hSyn 及 CaMKII 啟動子序列。亦可使用含有巨細胞病毒增強子 (例如,CAG 或 CBA)、U6、H1 或 7SK 啟動子的組成型啟動子。此等啟動子之序列為本領域已知的 (此等啟動子之序列亦在例如 WO 2022/011262 中揭示,其以引用方式併入本文)。 Polynucleotides suitable for use in the compositions and methods described herein also include those encoding inhibitory RNA agents found in mammalian regulatory sequences, such as promoter sequences and, optionally, enhancer sequences. Targets Grik2 mRNA under the control of Exemplary promoters useful for expression of the disclosed inhibitory RNA agents in mammalian cells include cell type-specific promoters. For example, neuron-specific expression of Grik2 inhibitory RNA agents can be conferred using neuron-specific promoters, such as the human synapsin 1 (hSyn) promoter or the Ca 2+ /calcin-dependent protein kinase II (CaMKII ) promoter. Variants of the hSyn and CaMKII promoters have been previously described in Hioki et al. Gene Therapy 14:872-82 (2007) and Sauerwald et al. J. Biol. Chem. 265(25):14932-7 (1990) , the disclosures of which are incorporated herein by reference as they relate to specific hSyn and CaMKII promoter sequences. Constitutive promoters containing the cytomegalovirus enhancer (eg, CAG or CBA), U6, H1, or 7SK promoters can also be used. The sequences of such promoters are known in the art (the sequences of such promoters are also disclosed, for example, in WO 2022/011262, which is incorporated herein by reference).
在特定實例中,本揭露之表現載體包括 SYN 啟動子 (諸如人類 SYN 啟動子 (hSyn),例如以下中之任一者:SEQ ID NO: 194 至 SEQ ID NO: 198 或其變體,該變體與以下中之任一者之核酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 194-198)。在另一實例中,本揭露之表現載體包括 CAMKII 啟動子 (例如,以下中之任一者:SEQ ID NO: 199 至 SEQ ID NO: 204 或其變體,該變體與以下中之任一者之核酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 99-204)。In specific examples, expression vectors of the present disclosure include a SYN promoter (such as the human SYN promoter (hSyn), for example, any of the following: SEQ ID NO: 194 to SEQ ID NO: 198 or a variant thereof, which variant A nucleic acid sequence having at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) sequence with any of the following Identity: SEQ ID NO: 194-198). In another example, expression vectors of the present disclosure include a CAMKII promoter (e.g., any of the following: SEQ ID NO: 199 to SEQ ID NO: 204 or a variant thereof that is consistent with any of the following The nucleic acid sequence has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) sequence identity: SEQ ID NO: 99-204).
適用於表現載體 (例如,質體或病毒載體,諸如 AAV 或慢病毒載體) 的示例性啟動子序列提供在下表 11 中。
表 11 :示例性神經元特異性啟動子序列
在特定實例中,本揭露之病毒載體併入了神經元特異性啟動子序列。在特定實例中,神經元特異性啟動子為人類 Syn (hSyn) 啟動子,諸如具有以下中之任一者之核酸序列的人類 Syn 啟動子:SEQ ID NO: 194 至 SEQ ID NO: 198 或其變體,該變體與以下中之任一者之核酸序列具有至少 70% (例如,至少 70%、75%、80%、85%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 194-198。In certain examples, viral vectors of the present disclosure incorporate neuron-specific promoter sequences. In a specific example, the neuron-specific promoter is a human Syn (hSyn) promoter, such as a human Syn promoter having a nucleic acid sequence of any of: SEQ ID NO: 194 to SEQ ID NO: 198, or thereof A variant that shares at least 70% (e.g., at least 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%) the nucleic acid sequence of any of the following , 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 194-198.
在另一實例中,神經元特異性啟動子為 CaMKII 啟動子序列,諸如以下中之任一者的 CaMKII 啟動子序列:SEQ ID NO: 199 至 SEQ ID NO: 204 或其變體,該變體與以下中之任一者之核酸序列具有至少 70% (例如,至少 70%、75%、80%、85%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 199-204。In another example, the neuron-specific promoter is a CaMKII promoter sequence, such as a CaMKII promoter sequence of any of: SEQ ID NO: 199 to SEQ ID NO: 204, or a variant thereof, which variant A nucleic acid sequence that is at least 70% identical to any of the following (e.g., at least 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96% , 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 199-204.
額外的 CaMKII 啟動子可包括以下文獻中描述的人類 α CaMKII 啟動子序列:Wang 等人 ( Mol. Biol. Rep.35(1): 37-44, 2007),其揭露以其整體併入本文,因為它涉及 CaMKII 啟動子序列。 Additional CaMKII promoters may include the human alpha CaMKII promoter sequence described in Wang et al. ( Mol. Biol. Rep. 35(1):37-44, 2007), the disclosure of which is incorporated herein in its entirety. Because it involves the CaMKII promoter sequence.
一旦將編碼所揭示的抑制性 RNA 劑的多核苷酸併入哺乳動物細胞之核 DNA 中,即可藉由本領域已知的方法誘導該多核苷酸的轉錄。例如,可以藉由將哺乳動物細胞暴露於外部化學試劑來誘導表現,該外部化學試劑諸如調節轉錄因子及/或 RNA 聚合酶與哺乳動物啟動子的結合並因此調節基因表現的藥劑。化學試劑可用於促進 RNA 聚合酶及/或轉錄因子與哺乳動物啟動子的結合,例如,藉由去除已結合該啟動子的阻遏蛋白。替代地,化學試劑可用於增強哺乳動物啟動子對 RNA 聚合酶及/或轉錄因子的親和力,使得位於啟動子下游之基因的轉錄速率在化學試劑存在下增加。藉由上述機制來強化多核苷酸轉錄的化學試劑的實例為四環素及去氧羥四環素。此等試劑為可商購的 (Life Technologies, Carlsbad, CA) 並且可根據已確立的方案向哺乳動物細胞投予以促進基因表現。Once a polynucleotide encoding a disclosed inhibitory RNA agent is incorporated into the nuclear DNA of a mammalian cell, transcription of the polynucleotide can be induced by methods known in the art. For example, expression can be induced by exposing mammalian cells to external chemical agents, such as agents that modulate the binding of transcription factors and/or RNA polymerases to mammalian promoters and thereby modulate gene expression. Chemical reagents can be used to promote binding of RNA polymerase and/or transcription factors to mammalian promoters, for example, by removing repressor proteins that have bound to the promoter. Alternatively, chemical reagents can be used to enhance the affinity of a mammalian promoter for RNA polymerase and/or transcription factors such that the rate of transcription of genes located downstream of the promoter is increased in the presence of the chemical reagent. Examples of chemical agents that enhance polynucleotide transcription through the above mechanisms are tetracycline and deoxytetracycline. These reagents are commercially available (Life Technologies, Carlsbad, CA) and can be administered to mammalian cells to promote gene expression according to established protocols.
可包括在用於本文所述的組成物及方法中的多核苷酸中的其他 DNA 序列元件為增強子序列。增強子代表另一類調節元件,其誘導含有目標基因的多核苷酸的構形改變,使得 DNA 採用有利於轉錄因子與 RNA 聚合酶在轉錄起始位點結合的三維取向。因此,用於本文所述的組成物及方法中的多核苷酸包括彼等編碼 Grik2靶向抑制性 RNA 劑並且額外包括哺乳動物增強子序列的多核苷酸。許多增強子序列現在已知來自哺乳動物基因,且實例為來自編碼哺乳動物珠蛋白、彈性蛋白酶、白蛋白、α-胎蛋白及胰島素的基因的增強子。用於本文所述的組成物及方法中的增強子亦包括彼等衍生自能夠感染真核細胞的病毒之遺傳物質者。實例為位於複製起點後側上之 SV40 增強子 (bp 100-270)、巨細胞病毒早期啟動子增強子、位於複製起點後側上之多瘤病毒增強子、及腺病毒增強子。誘導真核基因轉錄之活化的其他增強子序列在 Yaniv 等人,Nature 297:17 (1982) 中揭示。可將增強子剪接至含有編碼本揭露之反義構建體的多核苷酸的載體內,例如,在相對於該基因為 5' 或 3' 的位置處。在特定取向中,增強子位於啟動子的 5' 側,而啟動子又位於相對於編碼本揭露之抑制性 RNA 劑的多核苷酸的 5'。增強子序列之非限制性實例在表 12 中提供。 Other DNA sequence elements that may be included in the polynucleotides used in the compositions and methods described herein are enhancer sequences. Enhancers represent another class of regulatory elements that induce conformational changes in the polynucleotide containing the target gene such that the DNA adopts a three-dimensional orientation that favors the binding of transcription factors to RNA polymerase at the transcription start site. Accordingly, polynucleotides for use in the compositions and methods described herein include those encoding Grik2- targeting inhibitory RNA agents and additionally include mammalian enhancer sequences. Many enhancer sequences are now known from mammalian genes, and examples are enhancers from genes encoding mammalian globin, elastase, albumin, alpha-fetoprotein and insulin. Enhancers for use in the compositions and methods described herein also include those derived from the genetic material of viruses capable of infecting eukaryotic cells. Examples are the SV40 enhancer (bp 100-270) located behind the origin of replication, the cytomegalovirus early promoter enhancer, the polyoma virus enhancer located behind the origin of replication, and the adenovirus enhancer. Additional enhancer sequences that induce activation of eukaryotic gene transcription were revealed in Yaniv et al., Nature 297:17 (1982). The enhancer can be spliced into a vector containing a polynucleotide encoding an antisense construct of the present disclosure, for example, at a position 5' or 3' relative to the gene. In a particular orientation, the enhancer is located 5' to the promoter, which in turn is located 5' to the polynucleotide encoding the inhibitory RNA agent of the present disclosure. Non-limiting examples of enhancer sequences are provided in Table 12.
可包括在用於本文所述的組成物及方法中的多核苷酸中的其他調節元件為內含子序列。內含子序列為在前驅 mRNA 中發現的非蛋白質編碼 RNA 序列,該等內含子序列在 RNA 剪接過程中經去除以產生成熟的 mRNA 產物。內含子序列對於基因表現的調節很重要,因為它們可經進一步加工以產生其他非編碼 RNA 分子。替代性剪接、無義介導的衰變及 mRNA 輸出為已證明受內含子序列調節的生物過程。內含子序列亦可透過內含子介導的提高來促進轉殖基因的表現。內含子序列之非限制性實例在表 12 中提供。Other regulatory elements that may be included in the polynucleotides used in the compositions and methods described herein are intronic sequences. Intronic sequences are non-protein-coding RNA sequences found in pre-mRNA that are removed during RNA splicing to produce the mature mRNA product. Intronic sequences are important in the regulation of gene expression because they can be further processed to produce other noncoding RNA molecules. Alternative splicing, nonsense-mediated decay, and mRNA export are biological processes that have been shown to be regulated by intronic sequences. Intronic sequences may also promote transgenic gene expression through intron-mediated enhancement. Non-limiting examples of intron sequences are provided in Table 12.
可與本揭露之載體結合使用的其他調節元件包括反向末端重複序列 (ITR) 序列。ITR 序列見於例如 AAV 基因體中的 5' 及 3' 端處,該等序列各自通常包含約 145 個鹼基對。AAV ITR 序列對於 AAV 基因體倍增特別重要,一旦 AAV 載體被併入細胞內,它就會促進互補股合成。此外,已證明 ITR 對於 AAV 基因體整合到宿主細胞基因體內及 AAV 基因體的殼體化至關重要。ITR 序列之非限制性實例在表 12 中提供。Other regulatory elements that may be used in conjunction with the vectors of the present disclosure include inverted terminal repeat (ITR) sequences. ITR sequences are found, for example, at the 5' and 3' ends of the AAV genome, and these sequences typically contain approximately 145 base pairs each. The AAV ITR sequence is particularly important for AAV genome multiplication by promoting complementary strand synthesis once the AAV vector is incorporated into the cell. Furthermore, ITRs have been shown to be critical for integration of AAV gene bodies into host cell gene bodies and for encapsidation of AAV gene bodies. Non-limiting examples of ITR sequences are provided in Table 12.
適合併入本揭露之載體內的其他調節元件包括多腺苷酸化序列 (亦即,polyA 序列)。PolyA 序列為含有一段腺嘌呤鹼基的 RNA 尾。此等序列附加到 RNA 分子之 3' 端以產生成熟的 mRNA 轉錄本。與 mRNA 加工及轉運相關的數個生物過程由 polyA 序列調節,該等生物過程包括核輸出、轉譯及穩定性。在哺乳動物細胞中,縮短 polyA 尾導致 mRNA 降解的可能性增加。polyA 序列之非限制性實例在下表 12 中提供。
表 12 :示例性調節序列
在其他實例中,本揭露之病毒載體併入了一個或多個能夠促進本揭露之反義構建體表現的調節序列元件。在一個實例中,調節序列元件為內含子序列。例如,適用於包含在本揭露之載體中的內含子序列可為嵌合內含子,例如具有以下之核酸序列的嵌合內含子:SEQ ID NO: 205 或其變體,該變體與 SEQ ID NO: 205 之核酸序列具有至少 70% (例如,至少 70%、75%、80%、85%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。In other examples, the viral vectors of the present disclosure incorporate one or more regulatory sequence elements capable of promoting the expression of the antisense constructs of the present disclosure. In one example, the regulatory sequence elements are intronic sequences. For example, an intron sequence suitable for inclusion in a vector of the present disclosure may be a chimeric intron, such as a chimeric intron having the following nucleic acid sequence: SEQ ID NO: 205 or a variant thereof, which variant Be at least 70% identical to the nucleic acid sequence of SEQ ID NO: 205 (e.g., at least 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity.
在另一實例中,內含子序列為免疫球蛋白重鏈可變 4 (VH4) 內含子,諸如具有以下之核酸序列的 VH4 序列:SEQ ID NO: 206 或其變體,該變體與 SEQ ID NO: 206 之核酸序列具有至少 70% (例如,至少 70%、75%、80%、85%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。In another example, the intron sequence is an immunoglobulin heavy chain variable 4 (VH4) intron, such as a VH4 sequence having the following nucleic acid sequence: SEQ ID NO: 206 or a variant thereof that is identical to The nucleic acid sequence of SEQ ID NO: 206 has at least 70% (e.g., at least 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97 %, 98%, 99% or more (e.g., 100%)) sequence identity.
在一些實施例中,從 5' 到 3',載體包括:(a) 第一啟動子序列;(b) 內含子序列;(c) 包含莖環序列的多核苷酸;(d) 視情況,第二啟動子序列;及 (e) 視情況,包含莖環序列的多核苷酸。In some embodiments, from 5' to 3', the vector includes: (a) a first promoter sequence; (b) an intron sequence; (c) a polynucleotide comprising a stem-loop sequence; (d) optionally , a second promoter sequence; and (e) optionally, a polynucleotide comprising a stem-loop sequence.
在另一實例中,調節序列元件為增強子序列。例如,增強子序列可為 CMV 增強子,諸如具有以下之核酸序列的 CMV 增強子:SEQ ID NO: 207 或其變體,該變體與 SEQ ID NO: 207 之核酸序列具有至少 70% (例如,至少 70%、75%、80%、85%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。In another example, the regulatory sequence element is an enhancer sequence. For example, the enhancer sequence may be a CMV enhancer, such as a CMV enhancer having the nucleic acid sequence of SEQ ID NO: 207 or a variant thereof that is at least 70% identical to the nucleic acid sequence of SEQ ID NO: 207 (e.g., , at least 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100 %)) sequence identity.
在一些實施例中,從 5' 到 3',載體包括:(a) 增強子序列;(b) 第一啟動子序列;(c) 內含子序列;(d) 包含莖環序列的多核苷酸;(e) 視情況,第二啟動子序列;及 (f) 視情況,包含莖環序列的多核苷酸。In some embodiments, from 5' to 3', the vector includes: (a) an enhancer sequence; (b) a first promoter sequence; (c) an intron sequence; (d) a polynucleoside containing a stem-loop sequence acid; (e) optionally, a second promoter sequence; and (f) optionally, a polynucleotide comprising a stem-loop sequence.
在另一實例中,調節序列元件為 ITR 序列,例如 AAV ITR 序列。例如,ITR 序列可為 AAV 5' ITR 序列,諸如具有以下之核酸序列的 AAV 5' ITR 序列:SEQ ID NO: 208 或 SEQ ID NO: 209 或其變體,該變體與以下之核酸序列具有至少 70% (例如,至少 70%、75%、80%、85%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 208 或 SEQ ID NO: 209。In another example, the regulatory sequence element is an ITR sequence, such as an AAV ITR sequence. For example, the ITR sequence may be an AAV 5' ITR sequence, such as an AAV 5' ITR sequence having the following nucleic acid sequence: SEQ ID NO: 208 or SEQ ID NO: 209 or a variant thereof that is identical to the following nucleic acid sequence At least 70% (e.g., at least 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more Multiple (e.g., 100%)) sequence identity: SEQ ID NO: 208 or SEQ ID NO: 209.
在另一實例中,ITR 序列為 AAV 3' ITR 序列,諸如具有以下中之任一者之核酸序列的 AAV 3' ITR 序列:SEQ ID NO: 210 至 SEQ ID NO: 212 或其變體,該變體與以下中之任一者之核酸序列具有至少 70% (例如,至少 70%、75%、80%、85%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 210-212。In another example, the ITR sequence is an AAV 3' ITR sequence, such as an AAV 3' ITR sequence having the nucleic acid sequence of any of: SEQ ID NO: 210 to SEQ ID NO: 212, or a variant thereof, The variant has a nucleic acid sequence that is at least 70% identical to any of the following (e.g., at least 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity: SEQ ID NO: 210-212.
在一些實施例中,載體包括:從 5' 到 3',(a) 5' ITR 序列;(b) 視情況,增強子序列;(c) 第一啟動子序列;(d) 視情況,內含子序列;(e) 包含莖環序列的多核苷酸;(f) 視情況,第二啟動子序列;(g) 視情況,包含莖環序列的多核苷酸;及 (h) 3' ITR。In some embodiments, the vector includes: from 5' to 3', (a) a 5' ITR sequence; (b) optionally, an enhancer sequence; (c) a first promoter sequence; (d) optionally, within intron sequence; (e) a polynucleotide containing a stem-loop sequence; (f) optionally a second promoter sequence; (g) optionally a polynucleotide containing a stem-loop sequence; and (h) 3' ITR .
在另一實例中,調節序列元件為多腺苷酸化訊息序列 (亦即,多腺苷酸尾)。例如,適合與本文所揭示的載體合用的多腺苷酸化訊息序列包括兔 β-珠蛋白 (RBG) 多腺苷酸化訊息序列,諸如具有以下中之任一者之核酸序列的 RBG 多腺苷酸化訊息序列:SEQ ID NO: 213 至 SEQ ID NO: 215 或其變體,該變體與以下中之任一者之核酸序列具有至少 70% (例如,至少 70%、75%、80%、85%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 213-215。可與所揭示的組成物及方法結合使用的另一多腺苷酸化訊息序列為牛生長激素 (BGH) 多腺苷酸化訊息序列,諸如以下之 BGH 多腺苷酸化訊息序列:SEQ ID NO: 216 或其變體,該變體與 SEQ ID NO: 216 之核酸序列具有至少 70% (例如,至少 70%、75%、80%、85%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性。在一些實施例中,從 5' 到 3',載體包括:(a) 5' ITR 序列;(b) 視情況,增強子序列;(c) 第一啟動子序列;(d) 視情況,內含子序列;(e) 包含莖環序列的多核苷酸;(f) 視情況,第二啟動子序列;(g) 視情況,包含莖環序列的多核苷酸;(h) 多腺苷酸化訊息序列,諸如 RBG 多腺苷酸化訊息序列;及 (i) 3' ITR。 病毒載體 In another example, the regulatory sequence element is a polyadenylation message sequence (ie, a polyadenylation tail). For example, polyadenylation messages suitable for use with the vectors disclosed herein include rabbit beta-globin (RBG) polyadenylation messages, such as RBG polyadenylation having a nucleic acid sequence of any of the following Message sequence: SEQ ID NO: 213 to SEQ ID NO: 215 or a variant thereof, which is at least 70% (for example, at least 70%, 75%, 80%, 85%) identical to any of the following nucleic acid sequences %, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence Identity: SEQ ID NO: 213 -215. Another polyadenylation message that may be used in conjunction with the disclosed compositions and methods is the bovine growth hormone (BGH) polyadenylation message, such as the following BGH polyadenylation message: SEQ ID NO: 216 Or a variant thereof, which has at least 70% (e.g., at least 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%) the nucleic acid sequence of SEQ ID NO: 216 %, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity. In some embodiments, from 5' to 3', the vector includes: (a) 5' ITR sequence; (b) optionally, enhancer sequence; (c) first promoter sequence; (d) optionally, within Intron sequence; (e) Polynucleotide containing a stem-loop sequence; (f) Optionally, a second promoter sequence; (g) Optionally, a polynucleotide containing a stem-loop sequence; (h) Polyadenylation message sequence, such as the RBG polyadenylation message sequence; and (i) 3' ITR. viral vector
病毒基因體提供豐富的載體來源,該等載體可用於將外源多核苷酸有效輸送至哺乳動物細胞。病毒基因體為用於基因輸送的特別有用的載體,因為包含在此類基因體中的多核苷酸通常藉由普遍或專門的轉導併入哺乳動物細胞之核基因體中。此等過程作為自然病毒複製週期的一部分發生,且不需要添加蛋白質或試劑來誘導基因整合。病毒載體之實例為細小病毒 (例如,腺相關病毒 (AAV))、反轉錄病毒 (例如,反轉錄病毒科病毒載體)、腺病毒 (例如,Ad5、Ad26、Ad34、Ad35 及 Ad48)、冠狀病毒、負股 RNA 病毒諸如正黏液病毒 (例如,流感病毒)、棒狀病毒 (例如,狂犬病病毒及水皰性口炎病毒)、副黏液病毒 (例如,麻疹病毒及仙台病毒)、正股 RNA 病毒 (諸如小核糖核酸病毒及 α 病毒) 及雙股 DNA 病毒 (包括腺病毒、皰疹病毒 (例如,單純皰疹病毒第 1 型及第 2 型、艾司坦-巴爾病毒、巨細胞病毒) 及痘病毒 (例如,牛痘病毒、經修飾之安卡拉牛痘病毒 (MVA)、雞痘病毒及金絲雀痘病毒))。其他病毒包括,例如,Norwalk 病毒、披衣病毒、黃病毒、呼腸孤病毒、乳多泡病毒、嗜肝 DNA 病毒、人類乳突狀瘤病毒、人類泡沫病毒 (human foamy virus) 及肝炎病毒。反轉錄病毒之實例為鳥類白血病性肉瘤性病毒、鳥類 C 型病毒、哺乳動物 C 型、B 型病毒、D 型病毒、致癌反轉錄病毒、HTLV-BLV 組、慢病毒、α 反轉錄病毒、γ 反轉錄病毒、泡沫病毒 (spumavirus) (Coffin, J. M., Retroviridae: The viruses and their replication, Virology, 第三版 (Lippincott-Raven, Philadelphia, (1996)))。其他實例為鼠類白血病病毒、鼠類肉瘤病毒、鼠類乳腺腫瘤病毒、牛白血病病毒、貓白血病病毒、貓肉瘤病毒、鳥類白血病病毒、人類 T 細胞白血病病毒、狒狒內源性病毒、長臂猿白血病病毒、Mason Pfizer 猴病毒、猿猴免疫缺乏病毒、猿猴肉瘤病毒、Rous 氏肉瘤病毒及慢病毒。載體之其他實例在例如 McVey 等人 (美國專利號 5,801,030) 中描述,其教示以引用方式併入本文。Viral genomes provide a rich source of vectors that can be used to efficiently deliver exogenous polynucleotides into mammalian cells. Viral genomes are particularly useful vectors for gene delivery because the polynucleotides contained in such genomes are typically incorporated into the nuclear genome of mammalian cells by general or specialized transduction. These processes occur as part of the natural viral replication cycle and do not require the addition of proteins or reagents to induce gene integration. Examples of viral vectors are parvovirus (eg, adeno-associated virus (AAV)), retrovirus (eg, Retroviridae vectors), adenovirus (eg, Ad5, Ad26, Ad34, Ad35 and Ad48), coronavirus , negative-stranded RNA viruses such as orthomyxoviruses (e.g., influenza virus), rhabdoviruses (e.g., rabies virus and vesicular stomatitis virus), paramyxoviruses (e.g., measles virus and Sendai virus), positive-stranded RNA viruses (e.g., measles virus and Sendai virus), such as picornaviruses and alphaviruses) and double-stranded DNA viruses (including adenoviruses, herpesviruses (e.g., herpes simplex virus types 1 and 2, Estén-Barr virus, cytomegalovirus) and pox Viruses (e.g., vaccinia virus, modified vaccinia virus Ankara (MVA), fowlpox virus, and canarypox virus)). Other viruses include, for example, Norwalk virus, togavirus, flavivirus, reovirus, papillomavirus, hepadnavirus, human papilloma virus, human foamy virus, and hepatitis virus. Examples of retroviruses are avian leukemic sarcoid virus, avian C virus, mammalian C virus, B virus, D virus, oncogenic retrovirus, HTLV-BLV group, lentivirus, alpha retrovirus, gamma retrovirus Retrovirus, spumavirus (Coffin, J. M., Retroviridae: The viruses and their replication, Virology, 3rd ed. (Lippincott-Raven, Philadelphia, (1996))). Other examples are murine leukemia virus, murine sarcoma virus, murine mammary tumor virus, bovine leukemia virus, feline leukemia virus, feline sarcoma virus, avian leukemia virus, human T-cell leukemia virus, baboon endogenous virus, gibbon leukemia virus , Mason Pfizer simian virus, simian immunodeficiency virus, simian sarcoma virus, Rous' sarcoma virus, and lentivirus. Other examples of vectors are described, for example, in McVey et al. (U.S. Patent No. 5,801,030), the teachings of which are incorporated herein by reference.
AAVAAV 載體carrier
本文所述的組成物之核酸可併入 AAV 載體及/或病毒顆粒中,以促進它們引入細胞內,例如,結合本文所揭示的方法。AAV 載體可用於中樞神經系統,且適當的啟動子及血清型在例如 Pignataro 等人, J Neural Transm125(3):575-89 (2017) 中討論,其揭露以引用方式併入本文,因為它涉及在 CNS 基因治療中有用的啟動子及 AAV 血清型。可用於本文所述的組成物及方法中的 rAAV 載體為重組核酸構建體,其包括 (1) 待表現的異源序列 (例如,編碼 Grik2mRNA 靶向抑制性 RNA 劑的多核苷酸) 及 (2) 促進異源基因整合及表現的病毒序列。該等病毒序列可包括順式複制及包裝 DNA 到病毒體中所需的彼等 AAV 之序列 (例如,功能性 ITR)。此類 rAAV 載體亦可含有標記或報導基因。有用的 rAAV 載體具有一個或多個全部或部分缺失的 AAV WT 基因,但保留功能性側翼 ITR 序列。AAV ITR 可為適用於特定應用的任何血清型。使用 rAAV 載體的方法在例如 Tai 等人,J. Biomed. Sci. 7:279 (2000) 以及 Monahan 與 Samulski, Gene Delivery 7:24 (2000) 中描述,由於它們涉及用於基因輸送的 AAV 載體,其各自之揭露皆以引用方式併入本文。 The nucleic acids of the compositions described herein can be incorporated into AAV vectors and/or viral particles to facilitate their introduction into cells, for example, in conjunction with the methods disclosed herein. AAV vectors can be used in the central nervous system, and appropriate promoters and serotypes are discussed, for example, in Pignataro et al., J Neural Transm 125(3):575-89 (2017), the disclosure of which is incorporated herein by reference as it Involves promoters and AAV serotypes useful in CNS gene therapy. rAAV vectors useful in the compositions and methods described herein are recombinant nucleic acid constructs that include (1) a heterologous sequence to be expressed (e.g., a polynucleotide encoding a Grik2 mRNA-targeting inhibitory RNA agent) and ( 2) Viral sequences that promote integration and expression of heterologous genes. Such viral sequences may include sequences of their AAVs required for cis replication and packaging of DNA into virions (eg, functional ITRs). Such rAAV vectors may also contain marker or reporter genes. Useful rAAV vectors have one or more AAV WT genes deleted in whole or in part but retain functional flanking ITR sequences. The AAV ITR can be any serotype suitable for a specific application. Methods using rAAV vectors are described, for example, in Tai et al., J. Biomed. Sci. 7:279 (2000) and Monahan and Samulski, Gene Delivery 7:24 (2000), as they relate to AAV vectors for gene delivery. Their respective disclosures are incorporated herein by reference.
可用作併入本文所述的核酸劑 (例如,抑制性 RNA 序列 (例如,SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 226 至 SEQ ID NO: 229 以及 SEQ ID NO: 238 至 SEQ ID NO: 241 中之任一者)) 的載體的 AAV 之實例包括,例如,AAV1、AAV2、AAV3、AAV4、AAV5、AAV6、AAV7、AAV8、AAV9、AAV10、AAV11、AAV12、AAV13、AAV14、AAV15、AAV16、AAV.rh8、AAV.rh10、AAV.rh20、AAV.rh39、AAV.Rh74、AAV.RHM4-1、AAV.hu37、AAV.Anc80、AAV.Anc80L65、AAV.7m8、AAV.PHP.B、AAV.PHP.eB、AAV2.5、AAV2tYF、AAV3B、AAV.LK03、AAV.HSC1、AAV.HSC2、AAV.HSC3、AAV.HSC4、AAV.HSC5、AAV.HSC6、AAV.HSC7、AAV.HSC8、AAV.HSC9、AAV.HSC10 、AAV.HSC11、AAV.HSC12、AAV.HSC13、AAV.HSC14、AAV.HSC15、AAV-TT、AAV-DJ8 或 AAV.HSC16。Useful for incorporation into nucleic acid agents described herein (e.g., inhibitory RNA sequences (e.g., SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to any one of SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 226 to SEQ ID NO: 229 and SEQ ID NO: 238 to SEQ ID NO: 241)) Examples of AAV vectors include, for example, AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, AAV12, AAV13, AAV14, AAV15, AAV16, AAV.rh8, AAV.rh10, AAV .rh20, AAV.rh39, AAV.Rh74, AAV.RHM4-1, AAV.hu37, AAV.Anc80, AAV.Anc80L65, AAV.7m8, AAV.PHP.B, AAV.PHP.eB, AAV2.5, AAV2tYF , AAV3B, AAV.LK03, AAV.HSC1, AAV.HSC2, AAV.HSC3, AAV.HSC4, AAV.HSC5, AAV.HSC6, AAV.HSC7, AAV.HSC8, AAV.HSC9, AAV.HSC10, AAV.HSC11 , AAV.HSC12, AAV.HSC13, AAV.HSC14, AAV.HSC15, AAV-TT, AAV-DJ8 or AAV.HSC16.
可以將本文所述的核酸及載體併入 rAAV 病毒顆粒中以促進將核酸或載體引入細胞內。AAV 之殼體蛋白構成病毒顆粒至外部非核酸部分,且由 AAV cap 基因編碼。cap 基因編碼病毒顆粒組裝所需的三種病毒外殼蛋白 VP1、VP2 及 VP3。rAAV 病毒粒子的構建已在例如以下文獻中描述:US 5,173,414、US 5,139,941、US 5,863,541、US 5,869,305、US 6,057,152 及 US 6,376,237,以及 Rabinowitz 等人,J. Virol.76:791 (2002) 及 Bowles 等人,J. Virol.77:423 (2003),其各自之揭露皆以引用方式併入本文,因為它們涉及用於基因輸送的 AAV 載體。The nucleic acids and vectors described herein can be incorporated into rAAV viral particles to facilitate the introduction of the nucleic acids or vectors into cells. The capsid protein of AAV constitutes the outer non-nucleic acid part of the virus particle and is encoded by the AAV cap gene. The cap gene encodes three viral coat proteins, VP1, VP2, and VP3, required for virus particle assembly. The construction of rAAV virions has been described, for example, in US 5,173,414, US 5,139,941, US 5,863,541, US 5,869,305, US 6,057,152 and US 6,376,237, and Rabinowitz et al., J. Virol. 76:791 (2002) and Bowles et al. , J. Virol. 77:423 (2003), the respective disclosures of which are incorporated herein by reference as they relate to AAV vectors for gene delivery.
與本文所述的組成物及方法結合使用的 rAAV 病毒顆粒包括衍生自各種 AAV 血清型 (包括 AAV 1、2、3、4、5、6、7、8、9、10 及 rh74) 的彼等病毒顆粒。對於定位在或經輸送至中樞神經系統的靶向細胞,AAV2、AAV9 及 AAV10 可能特別有用。不同血清型的 AAV 載體及 AAV 蛋白的構建及使用在例如以下文獻中描述:Chao 等人,Mol. Ther. 2:619 (2000);Davidson 等人,Proc. Natl. Acad. Sci.USA 97:3428 (2000);Xiao 等人,J. Virol.72:2224 (1998);Halbert 等人,J. Virol.74:1524 (2000);Halbert 等人,J. Virol.75:6615 (2001);及 Auricchio 等人,Hum. Molec. Genet. 10:3075 (2001),其各自之揭露皆以引用方式併入本文,因為它們涉及用於基因輸送的 AAV 載體。rAAV virions for use in conjunction with the compositions and methods described herein include those derived from various AAV serotypes, including AAV 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, and rh74. virus particles. AAV2, AAV9, and AAV10 may be particularly useful for targeting cells located in or delivered to the central nervous system. The construction and use of AAV vectors and AAV proteins of different serotypes are described in, for example, Chao et al., Mol. Ther. 2:619 (2000); Davidson et al., Proc. Natl. Acad. Sci.USA 97: 3428 (2000); Xiao et al., J. Virol.72:2224 (1998); Halbert et al., J. Virol.74:1524 (2000); Halbert et al., J. Virol.75:6615 (2001); and Auricchio et al., Hum. Molec. Genet. 10:3075 (2001), the disclosures of each of which are incorporated herein by reference as they relate to AAV vectors for gene delivery.
亦可與本文所述的組成物及方法結合使用者為經假型化之 rAAV 載體。經假型化之載體包括用衍生自給定血清型以外之血清型的殼體基因假型化的給定血清型之 AAV 載體 (AAV1、AAV2、AAV3、AAV4、AAV5、AAV6、AAV7、AAV8、AAV9、AAV10、AAV11、AAV12、AAV13、AAV14、AAV15、AAV16、AAV.rh8、AAV.rh10、AAV.rh20、AAV.rh39、AAV.Rh74、AAV.RHM4-1、AAV.hu37、AAV.Anc80、AAV.Anc80L65、AAV.7m8、AAV.PHP.B、AAV.PHP.eB、AAV2.5、AAV2tYF、AAV3B、AAV.LK03、AAV.HSC1、AAV.HSC2、AAV.HSC3、AAV.HSC4、AAV.HSC5、AAV.HSC6、AAV.HSC7、AAV.HSC8、AAV.HSC9、AAV.HSC10 、AAV.HSC11、AAV.HSC12、AAV.HSC13、AAV.HSC14、AAV.HSC15、AAV-TT、AAV-DJ8 或 AAV.HSC16)。例如,AAV 可包括經假型化之重組 AAV (rAAV) 載體,諸如 rAAV2/8 或 rAAV2/9 載體。產生及使用經假型化之 rAAV 的方法為本領域已知的 (參見,例如,Duan 等人,J. Virol., 75:7662-7671 (2001);Halbert 等人,J. Virol., 74:1524-1532 (2000);Zolotukhin 等人,Methods 28:158-167 (2002);及 Auricchio 等人,Hum.Molec.Genet.10:3075-3081, (2001)。Pseudotyped rAAV vectors may also be used in conjunction with the compositions and methods described herein. Pseudotyped vectors include AAV vectors of a given serotype pseudotyped with capsid genes derived from serotypes other than the given serotype (AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9 , AAV10, AAV11, AAV12, AAV13, AAV14, AAV15, AAV16, AAV.rh8, AAV.rh10, AAV.rh20, AAV.rh39, AAV.Rh74, AAV.RHM4-1, AAV.hu37, AAV.Anc80, AAV .Anc80L65, AAV.7m8, AAV.PHP.B, AAV.PHP.eB, AAV2.5, AAV2tYF, AAV3B, AAV.LK03, AAV.HSC1, AAV.HSC2, AAV.HSC3, AAV.HSC4, AAV.HSC5 , AAV.HSC6, AAV.HSC7, AAV.HSC8, AAV.HSC9, AAV.HSC10, AAV.HSC11, AAV.HSC12, AAV.HSC13, AAV.HSC14, AAV.HSC15, AAV-TT, AAV-DJ8 or AAV .HSC16). For example, AAV may include pseudotyped recombinant AAV (rAAV) vectors, such as rAAV2/8 or rAAV2/9 vectors. Methods for generating and using pseudotyped rAAV are known in the art (see, eg, Duan et al., J. Virol., 75:7662-7671 (2001); Halbert et al., J. Virol., 74 :1524-1532 (2000); Zolotukhin et al., Methods 28:158-167 (2002); and Auricchio et al., Hum. Molec. Genet. 10:3075-3081, (2001).
在病毒顆粒殼體內具有突變的 AAV 病毒顆粒可用於比未經突變之殼體病毒顆粒有效地感染特定細胞類型。例如,合適之 AAV 突變體可具有配體插入突變,以促進使 AAV 靶向特定細胞類型。AAV 殼體突變體 (包括插入突變體、丙胺酸篩選突變體及表位標籤突變體) 的構建及表征在 Wu 等人,J. Virol.74:8635 (2000) 中描述。可用於本文所述方法中的其他 rAAV 病毒顆粒包括藉由病毒之分子育種並藉由外顯子改組產生的彼等殼體雜合體。參見,例如,Soong 等人,Nat. Genet., 25:436 (2000) 及 Kolman 與 Stemmer, Nat. Biotechnol.19:423 (2001) 中描述。AAV virions with mutations within the virion capsid can be used to infect specific cell types more efficiently than unmutated capsid virions. For example, suitable AAV mutants may have ligand insertion mutations to facilitate targeting of AAV to specific cell types. Construction and characterization of AAV capsid mutants, including insertion mutants, alanine selection mutants, and epitope tag mutants, are described in Wu et al., J. Virol. 74:8635 (2000). Other rAAV virions useful in the methods described herein include those capsid hybrids produced by molecular breeding of the virus and by exon shuffling. See, for example, Soong et al., Nat. Genet., 25:436 (2000) and Kolman and Stemmer, Nat. Biotechnol. 19:423 (2001).
在本揭露之組成物及方法中使用的 rAAV 可包括來自選自以下之 AAV 殼體血清型的殼體蛋白:AAV1、AAV2、AAV3、AAV4、AAV5、AAV6、AAV7、AAV8、AAV9、AAV10、AAV11、AAV12、AAV13、AAV14、AAV15、AAV16、AAV.rh8、AAV.rh10、AAV.rh20、AAV.rh39、AAV.Rh74、AAV.RHM4-1、AAV.hu37、AAV.Anc80、AAV.Anc80L65、AAV.7m8、AAV.PHP.B、AAV.PHP.eB、AAV2.5、AAV2tYF、AAV3B、AAV.LK03、AAV.HSC1、AAV.HSC2、AAV.HSC3、AAV.HSC4、AAV.HSC5、AAV.HSC6、AAV.HSC7、AAV.HSC8、AAV.HSC9、AAV.HSC10 、AAV.HSC11、AAV.HSC12、AAV.HSC13、AAV.HSC14、AAV.HSC15、AAV.HSC16、AAV-TT、AAVDJ8 或其衍生物、修飾或假型,諸如與選自以下之 AAV 殼體血清型之 vp1、vp2 及/或 vp3 之序列至少 80% 或更多相同 (例如,85%、85%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%、99.5% 或更多,亦即,高達 100% 相同) 的殼體蛋白:AAV1、AAV2、AAV3、AAV4、AAV5、AAV6、AAV7、AAV8、AAV9、AAV10、AAV11、AAV12、AAV13、AAV14、AAV15、AAV16、AAV.rh8、AAV.rh10、AAV.rh20、AAV.rh39、AAV.Rh74、AAV.RHM4-1、AAV.hu37、AAV.Anc80、AAV.Anc80L65、AAV.7m8、AAV.PHP.B、AAV.PHP.eB、AAV2.5、AAV2tYF、AAV3B、AAV.LK03、AAV.HSC1、AAV.HSC2、AAV.HSC3、AAV.HSC4、AAV.HSC5、AAV.HSC6、AAV.HSC7、AAV.HSC8、AAV.HSC9、AAV.HSC10 、AAV.HSC11、AAV.HSC12、AAV.HSC13、AAV.HSC14、AAV.HSC15、AAV-TT、AAV-DJ8 或 AAV.HSC16。rAAV used in the compositions and methods of the present disclosure may include capsid proteins from AAV capsid serotypes selected from: AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11 , AAV12, AAV13, AAV14, AAV15, AAV16, AAV.rh8, AAV.rh10, AAV.rh20, AAV.rh39, AAV.Rh74, AAV.RHM4-1, AAV.hu37, AAV.Anc80, AAV.Anc80L65, AAV .7m8, AAV.PHP.B, AAV.PHP.eB, AAV2.5, AAV2tYF, AAV3B, AAV.LK03, AAV.HSC1, AAV.HSC2, AAV.HSC3, AAV.HSC4, AAV.HSC5, AAV.HSC6 , AAV.HSC7, AAV.HSC8, AAV.HSC9, AAV.HSC10, AAV.HSC11, AAV.HSC12, AAV.HSC13, AAV.HSC14, AAV.HSC15, AAV.HSC16, AAV-TT, AAVDJ8 or its derivatives , modified or pseudotyped, such as at least 80% or more identical to the sequence of vp1, vp2 and/or vp3 of an AAV capsid serotype selected from the following (e.g., 85%, 85%, 87%, 88%, 89 %, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.5% or more, that is, up to 100% identical) of the shell protein : AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, AAV12, AAV13, AAV14, AAV15, AAV16, AAV.rh8, AAV.rh10, AAV.rh20, AAV.rh39, AAV .Rh74, AAV.RHM4-1, AAV.hu37, AAV.Anc80, AAV.Anc80L65, AAV.7m8, AAV.PHP.B, AAV.PHP.eB, AAV2.5, AAV2tYF, AAV3B, AAV.LK03, AAV .HSC1, AAV.HSC2, AAV.HSC3, AAV.HSC4, AAV.HSC5, AAV.HSC6, AAV.HSC7, AAV.HSC8, AAV.HSC9, AAV.HSC10, AAV.HSC11, AAV.HSC12, AAV.HSC13 , AAV.HSC14, AAV.HSC15, AAV-TT, AAV-DJ8 or AAV.HSC16.
可用於本文所述方法中的 AAV 載體可為 Anc80 或 Anc80L65 載體,如 Zinn 等人,2015: 1056-1068 中所述,其以引用方式以其整體併入。AAV 載體可包括以下胺基酸插入中之一者:LGETTRP (‘956、‘517、‘282 或 ‘323 之 SEQ ID NO: 14) 或 LALGETTRP (‘956、‘517、‘282 或 ‘323 之 SEQ ID NO: 15),如美國專利號 9,193,956、9458517 及 9,587,282以及美國專利申請公開號 2016/0376323 中所述,其各自皆以引用方式以其整體併入本文。替代地,用於本文所述方法中的 AAV 載體可為 AAV.7m8,如美國專利號 9,193,956、9,458,517 及 9,587,282以及美國專利申請公開號 2016/0376323 中所述,其各自皆以引用方式以其整體併入本文。再進一步,本文所述方法中使用的 AAV 載體可為美國專利號 9,585,971 中揭示的任何 AAV,諸如 AAV.PHP.B 載體。本文所述方法中使用的另一 AAV 載體可為 Chan 等人 ( Nat Neurosci.20(8):1172-1179, 2017) 中揭示的任何載體,諸如 AAV.PHP.eB,其包含具有插入在胺基酸位置 588 於 589 之間的肽及修飾 A587D/588G 的 AAV9 殼體蛋白。此外,本文所述方法中使用的 AAV 載體可為美國專利號 9,840,719 及 WO 2015/013313 中揭示的任何 AAV,諸如 AAV.Rh74 或 RHM4-1 載體,該等專利各自以引用方式以其整體併入本文。此外,本文所述方法中使用的 AAV 載體可為 WO 2014/172669 中揭示的任何 AAV,諸如 AAV rh.74,該專利以引用方式以其整體併入本文。本文所述方法中使用的 AAV 載體亦可為 AAV2/5 載體,如 Georgiadis 等人,2016, Gene Therapy 23: 857-862 和 Georgiadis 等人,2018, Gene Therapy 25: 450 中所述;該等文獻各自以引用方式以其整體併入。在又一實例中,本文所述方法中使用的 AAV 載體可為 WO 2017/070491 中揭示的任何 AAV,諸如 AAV2tYF 載體,該專利以引用方式以其整體併入本文。此外,本文所述方法中使用的 AAV 載體可為 AAVLK03 或 AAV3B 載體,如 Puzzo 等人,2017, Sci. Transl. Med. 29(9): 418 中所述,其以引用方式以其整體併入。在其他實例中,本文所述方法中使用的 AAV 載體可為美國專利號 8,628,966、US 8,927,514、US 9,923,120 及 WO 2016/049230 中揭示的任何 AAV,諸如 HSC1、HSC2、HSC3、HSC4、HSC5、HSC6、HSC7、HSC8、HSC9、HSC10、HSC11、HSC12、HSC13、HSC14、HSC15 或 HSC16,該等專利各自以引用形式以其整體併入。 AAV vectors useful in the methods described herein may be Anc80 or Anc80L65 vectors, as described in Zinn et al., 2015: 1056-1068, which is incorporated by reference in its entirety. AAV vectors may include one of the following amino acid insertions: LGETTRP (SEQ ID NO: 14 of '956, '517, '282, or '323) or LALGETTRP (SEQ of '956, '517, '282, or '323 ID NO: 15), as described in U.S. Patent Nos. 9,193,956, 9458517, and 9,587,282, and U.S. Patent Application Publication No. 2016/0376323, each of which is incorporated herein by reference in its entirety. Alternatively, the AAV vector used in the methods described herein can be AAV.7m8, as described in U.S. Patent Nos. 9,193,956, 9,458,517, and 9,587,282 and U.S. Patent Application Publication No. 2016/0376323, each of which is incorporated by reference in its entirety. Incorporated herein. Still further, the AAV vector used in the methods described herein can be any AAV disclosed in US Pat. No. 9,585,971, such as the AAV.PHP.B vector. Another AAV vector used in the methods described herein can be any of the vectors disclosed in Chan et al. ( Nat Neurosci. 20(8):1172-1179, 2017), such as AAV.PHP.eB, which contains an amine Peptides between amino acid positions 588 and 589 and modified A587D/588G AAV9 capsid protein. Additionally, the AAV vector used in the methods described herein can be any AAV disclosed in U.S. Patent No. 9,840,719 and WO 2015/013313, such as the AAV.Rh74 or RHM4-1 vector, each of which is incorporated by reference in its entirety. This article. Furthermore, the AAV vector used in the methods described herein can be any AAV disclosed in WO 2014/172669, such as AAV rh.74, which patent is incorporated herein by reference in its entirety. The AAV vector used in the methods described herein can also be an AAV2/5 vector, as described in Georgiadis et al., 2016, Gene Therapy 23: 857-862 and Georgiadis et al., 2018, Gene Therapy 25: 450; these documents Each is incorporated by reference in its entirety. In yet another example, the AAV vector used in the methods described herein can be any AAV disclosed in WO 2017/070491, such as the AAV2tYF vector, which patent is incorporated herein by reference in its entirety. Additionally, the AAV vector used in the methods described herein can be an AAVLK03 or AAV3B vector, as described in Puzzo et al., 2017, Sci. Transl. Med. 29(9): 418, which is incorporated by reference in its entirety. . In other examples, the AAV vector used in the methods described herein can be any AAV disclosed in US Pat. No. 8,628,966, US 8,927,514, US 9,923,120, and WO 2016/049230, such as HSC1, HSC2, HSC3, HSC4, HSC5, HSC6, HSC7, HSC8, HSC9, HSC10, HSC11, HSC12, HSC13, HSC14, HSC15 or HSC16, each of these patents is incorporated by reference in its entirety.
此外,本文所述方法中使用的 AAV 載體可為以下任何專利及專利申請中揭示的 AAV 載體,各專利及專利申請皆以引用方式以其整體併入本文:美國專利號 7,282,199、7,906,111、8,524,446、8,999,678、8,628,966、8,927,514、8,734,809、US 9,284,357、9,409,953、9,169,299、9,193,956、9458517 及 9,587,282;美國專利申請公開號2015/0374803、2015/0126588、2017/0067908、2013/0224836、2016/0215024、2017/0051257;以及國際專利申請號 PCT/US2015/034799、PCT/EP2015/053335。rAAV 載體可具有殼體蛋白,該殼體蛋白與以下專利及專利申請 (其各自以引用方式以其整體併入本文) 中所揭示的 AAV 殼體之 vp1、vp2 及/或 vp3 胺基酸序列至少 80% 或更多相同 (例如,85%、85%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%、99.5% 或更多 (例如,100%)):美國專利號 7,282,199、7,906,111、8,524,446、8,999,678、8,628,966、8,927,514、8,734,809、US 9,284,357、9,409,953、9,169,299、9,193,956、9458517 及 9,587,282;美國專利申請公開號2015/0374803、2015/0126588、2017/0067908、2013/0224836、2016/0215024、2017/0051257;以及國際專利申請號 PCT/US2015/034799、PCT/EP2015/053335。In addition, the AAV vector used in the methods described herein can be the AAV vector disclosed in any of the following patents and patent applications, each of which is incorporated herein by reference in its entirety: U.S. Patent Nos. 7,282,199, 7,906,111, 8,524,446, 8,999,678, 8,628,966, 8,927,514, 8,734,809, US 9,284,357, 9,409,953, 9,169,299, 9,193,956, 9458517 and 9,587,282; US Patent Application Publication No. 2015/0374803, 2015 /0126588, 2017/0067908, 2013/0224836, 2016/0215024, 2017/0051257; and international patent application numbers PCT/US2015/034799, PCT/EP2015/053335. The rAAV vector may have a capsid protein that is consistent with the vp1, vp2, and/or vp3 amino acid sequences of the AAV capsid disclosed in the following patents and patent applications (each of which is incorporated herein by reference in its entirety) At least 80% or more the same (e.g., 85%, 85%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98 %, 99%, 99.5% or more (e.g., 100%)): U.S. Patent Nos. 7,282,199, 7,906,111, 8,524,446, 8,999,678, 8,628,966, 8,927,514, 8,734,809, US 9,284,357, 9,409,953, 9,16 9,299, 9,193,956, 9458517 and 9,587,282; U.S. Patents Application publication numbers 2015/0374803, 2015/0126588, 2017/0067908, 2013/0224836, 2016/0215024, 2017/0051257; and international patent application numbers PCT/US2015/034799, PCT/EP2015/053335.
此外,rAAV 載體可具有以下文獻中揭示的殼體蛋白:國際申請公開號 WO 2003/052051 (參見,例如,‘051 之 SEQ ID NO: 2)、WO 2005/033321 (參見,例如,‘321 之 SEQ ID NO: 123 及 SEQ ID NO: 88)、WO 03/042397 (參見,例如,‘397 之 SEQ ID NO: 2、SEQ ID NO: 81、SEQ ID NO: 85 及 SEQ ID NO: 97)、WO 2006/068888 (參見,例如,‘888 之 SEQ ID NO: 1 及 SEQ ID NO: 3 至 SEQ ID NO: 6)、WO 2006/110689 (參見,例如,‘689 之 SEQ ID NO: 5 至 SEQ ID NO: 38)、WO2009/104964 (參見,例如,‘964 之 SEQ ID NO: 1 至 SEQ ID NO: 5、SEQ ID NO: 7、SEQ ID NO: 9、SEQ ID NO: 20、SEQ ID NO: 22、SEQ ID NO: 24 及 SEQ ID NO: 31),WO 2010/127097 (參見,例如,‘097 之 SEQ ID NO: 5 至 SEQ ID NO: 38) 及 WO 2015/191508 (參見,例如,‘058 之 SEQ ID NO: 80 至 SEQ ID NO: 294) 及美國申請公開號 20150023924 (參見,例如,'924 之 SEQ ID NO: 1、SEQ ID NO: 5 至 SEQ ID NO: 10),其各自之內容皆以引用方式以其整體併入本文,例如,rAAV 載體具有與以下文獻中揭示之 AAV 殼體之 vp1、vp2 及/或 vp3 胺基酸序列至少 80% (例如 85%、85%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%、99.5% 或更多 (例如,100%)) 相同的衣殼蛋白:國際申請公開號 WO 2003/052051 (參見,例如,‘051 之 SEQ ID NO: 2)、WO 2005/033321 (參見,例如,‘321 之 SEQ ID NO: 123 及 SEQ ID NO: 88)、WO 03/042397 (參見,例如,‘397 之 SEQ ID NO: 2、SEQ ID NO: 81、SEQ ID NO: 85 及 SEQ ID NO: 97)、WO 2006/068888 (參見,例如,‘888 之 SEQ ID NO: 1 及 SEQ ID NO: 3 至 SEQ ID NO: 6)、WO 2006/110689 (參見,例如,‘689 之 SEQ ID NO: 5 至 SEQ ID NO: 38)、WO2009/104964 (參見,例如,‘964 之 SEQ ID NO: 1 至 SEQ ID NO: 5、SEQ ID NO: 7、SEQ ID NO: 9、SEQ ID NO: 20、SEQ ID NO: 22、SEQ ID NO: 24 及 SEQ ID NO: 31),WO 2010/127097 (參見,例如,‘097 之 SEQ ID NO: 5 至 SEQ ID NO: 38) 及 WO 2015/191508 (參見,例如,‘508 之 SEQ ID NO: 80 至 SEQ ID NO: 294) 及美國申請公開號 20150023924 (參見,例如,'924 之 SEQ ID NO: 1、SEQ ID NO: 5 至 SEQ ID NO: 10)。In addition, the rAAV vector may have a capsid protein disclosed in the following documents: International Application Publication No. WO 2003/052051 (see, for example, SEQ ID NO: 2 of '051), WO 2005/033321 (see, for example, '321 of SEQ ID NO: 123 and SEQ ID NO: 88), WO 03/042397 (see, for example, SEQ ID NO: 2, SEQ ID NO: 81, SEQ ID NO: 85 and SEQ ID NO: 97 of '397), WO 2006/068888 (see, for example, SEQ ID NO: 1 and SEQ ID NO: 3 to SEQ ID NO: 6 of '888), WO 2006/110689 (see, for example, SEQ ID NO: 5 to SEQ ID NO: 689 of '689) ID NO: 38), WO2009/104964 (see, for example, SEQ ID NO: 1 to SEQ ID NO: 5, SEQ ID NO: 7, SEQ ID NO: 9, SEQ ID NO: 20, SEQ ID NO of '964 : 22, SEQ ID NO: 24 and SEQ ID NO: 31), WO 2010/127097 (see, for example, SEQ ID NO: 5 to SEQ ID NO: 38 of '097) and WO 2015/191508 (see, for example, SEQ ID NO: 5 to SEQ ID NO: 38 of '097) SEQ ID NO: 80 to SEQ ID NO: 294 of '058) and U.S. Application Publication No. 20150023924 (see, e.g., SEQ ID NO: 1, SEQ ID NO: 5 to SEQ ID NO: 10 of '924), each of which The contents of are incorporated herein by reference in their entirety. For example, the rAAV vector has at least 80% (e.g., 85%, 85%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.5% or more (for example, 100%) ) Identical capsid protein: International Application Publication No. WO 2003/052051 (see, for example, SEQ ID NO: 2 of '051), WO 2005/033321 (see, for example, SEQ ID NO: 123 and SEQ ID NO. of '321 NO: 88), WO 03/042397 (see, e.g., SEQ ID NO: 2, SEQ ID NO: 81, SEQ ID NO: 85 and SEQ ID NO: 97 of '397), WO 2006/068888 (see, e.g., SEQ ID NO: 2, SEQ ID NO: 81, SEQ ID NO: 85 and SEQ ID NO: 97 of '397) , SEQ ID NO: 1 and SEQ ID NO: 3 to SEQ ID NO: 6 of '888), WO 2006/110689 (see, for example, SEQ ID NO: 5 to SEQ ID NO: 38 of '689), WO2009/ 104964 (See, e.g., SEQ ID NO: 1 to SEQ ID NO: 5, SEQ ID NO: 7, SEQ ID NO: 9, SEQ ID NO: 20, SEQ ID NO: 22, SEQ ID NO: 24 of '964 and SEQ ID NO: 31), WO 2010/127097 (see, for example, SEQ ID NO: 5 to SEQ ID NO: 38 of '097) and WO 2015/191508 (see, for example, SEQ ID NO: 80 of '508 to SEQ ID NO: 294) and U.S. Application Publication No. 20150023924 (see, e.g., SEQ ID NO: 1, SEQ ID NO: 5 to SEQ ID NO: 10 of '924).
基於 AAV 之病毒載體的核酸序列以及製備重組 AAV 及 AAV 殼體的方法與以下文獻中教示:美國專利號 7,282,199、7,906,111、8,524,446、8,999,678、8,628,966、8,927,514、8,734,809、US 9,284,357、9,409,953、9,169,299、9,193,956、9458517 及 9,587,282;美國專利申請公開號2015/0374803、2015/0126588、2017/0067908、2013/0224836、2016/0215024、2017/0051257;國際專利申請號 PCT/US2015/034799、PCT/EP2015/053335、WO 2003/052051、WO 2005/033321、WO 03/042397、WO 2006/068888、WO 2006/110689、WO2009/104964、W0 2010/127097 及 WO 2015/191508;以及美國申請公開第 20150023924 號。The nucleic acid sequences of AAV-based viral vectors and methods for preparing recombinant AAV and AAV capsids are as taught in the following documents: US Patent Nos. 7,282,199, 7,906,111, 8,524,446, 8,999,678, 8,628,966, 8,927,514, 8,734,809, US 9,284,357, 9,409,9 53, 9,169,299, 9,193,956, 9458517 and 9,587,282; U.S. Patent Application Publication Nos. 2015/0374803, 2015/0126588, 2017/0067908, 2013/0224836, 2016/0215024, 2017/0051257; International Patent Application Nos. PCT/US2015/034799, PC T/EP2015/053335、WO 2003/052051, WO 2005/033321, WO 03/042397, WO 2006/068888, WO 2006/110689, WO2009/104964, WO 2010/127097 and WO 2015/191508; and U.S. Application Publication No. 201500239 No. 24.
據此,rAAV 載體可包括殼體,該殼體含有來自兩種或更多種 AAV 殼體血清型的殼體蛋白,諸如選自以下的 AAV 血清型:AAV1、AAV2、AAV3、AAV4、AAV5、AAV6、AAV7、AAV8、AAV9、AAV10、AAV11、AAV12、AAV13、AAV14、AAV15、AAV16、AAV.rh8、AAV.rh10、AAV.rh20、AAV.rh39、AAV.Rh74、AAV.RHM4-1、AAV.hu37、AAV.Anc80、AAV.Anc80L65、AAV.7m8、AAV.PHP.B、AAV.PHP.eB、AAV2.5、AAV2tYF、AAV3B、AAV.LK03、AAV.HSC1、AAV.HSC2、AAV.HSC3、AAV.HSC4、AAV.HSC5、AAV.HSC6、AAV.HSC7、AAV.HSC8、AAV.HSC9、AAV.HSC10 、AAV.HSC11、AAV.HSC12、AAV.HSC13、AAV.HSC14、AAV.HSC15、AAV-TT、AAV-DJ8 或 AAV.HSC16。Accordingly, the rAAV vector may comprise a capsid containing capsid proteins from two or more AAV capsid serotypes, such as an AAV serotype selected from: AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, AAV12, AAV13, AAV14, AAV15, AAV16, AAV.rh8, AAV.rh10, AAV.rh20, AAV.rh39, AAV.Rh74, AAV.RHM4-1, AAV. hu37, AAV.Anc80, AAV.Anc80L65, AAV.7m8, AAV.PHP.B, AAV.PHP.eB, AAV2.5, AAV2tYF, AAV3B, AAV.LK03, AAV.HSC1, AAV.HSC2, AAV.HSC3, AAV.HSC4, AAV.HSC5, AAV.HSC6, AAV.HSC7, AAV.HSC8, AAV.HSC9, AAV.HSC10, AAV.HSC11, AAV.HSC12, AAV.HSC13, AAV.HSC14, AAV.HSC15, AAV- TT, AAV-DJ8 or AAV.HSC16.
單股 AAV (ssAAV) 載體可與所揭示的方法及組成物結合使用。替代地,可使用自互補 AAV 載體 (scAAV) (參見,例如,Wu, 2007, Human Gene Therapy, 18(2):171-82、McCarty 等人 2001, Gene Therapy, 第 8 卷,第 16 期,第 1248-1254 頁;及美國專利號 6,596,535、7,125,717 及 7,456,683,其各自以引用方法以其整體併入本文)。Single-stranded AAV (ssAAV) vectors can be used in conjunction with the disclosed methods and compositions. Alternatively, self-complementary AAV vectors (scAAV) can be used (see, e.g., Wu, 2007, Human Gene Therapy, 18(2):171-82, McCarty et al. 2001, Gene Therapy, Vol. 8, No. 16, pages 1248-1254; and U.S. Patent Nos. 6,596,535, 7,125,717, and 7,456,683, each of which is incorporated herein by reference in its entirety).
對中樞神經系統中之細胞具有趨向性的重組 AAV 載體,包括但不限於神經元及/或神經膠質細胞,可用於輸送本揭露之多核苷酸劑 (例如,抑制性 RNA 劑)。此類載體可包括非複制性「rAAV」載體,特定而言,帶有 AAV5、AAV9 或 AAVrh10 殼體的載體。可以使用 AAV 變體殼體,包括但不限於彼等由 Wilson 在美國專利號 7,906,111 (該專利以引用方式以其整體併入本文) 中描述者,其中以 AAV/hu.31 及 AAV/hu.32 為特別較佳者;以及由 Chatterjee 在以下文獻中描述的 AAV 變體殼體:美國專利號 8,628,966、美國專利號 8,927,514 及 Smith 等人,2014, Mol Ther 22: 1625-1634,其等各自以引用方式以其整體併入。此外,由 Tordo 等人( Brain141:2014-31, 2018;以引用方式以其整體併入本文) 揭示的 AAV-TT 載體併入了天然 AAV2 分離株中之保留式胺基酸序列,亦可與本揭露之組成物及方法結合使用。相較於 AAV2、AAV9 及 AAVrh10,AAV-TT 變體殼體在整個 CNS 中表現出提高的趨神經性及穩健分佈。類似地,Hammond 等人( PLoSONE 12(2):e0188830, 2017;以引用方式以其整體併入本文) 揭示的 AAV-DJ8 載體表現出優異之趨神經性並且可能適合與本揭露之組成物及方法合用。 Recombinant AAV vectors with tropism for cells in the central nervous system, including but not limited to neurons and/or glial cells, can be used to deliver polynucleotide agents (eg, inhibitory RNA agents) of the present disclosure. Such vectors may include non-replicating "rAAV" vectors, specifically vectors with AAV5, AAV9 or AAVrh10 capsids. AAV variant shells may be used, including, but not limited to, those described by Wilson in U.S. Patent No. 7,906,111, which is incorporated by reference in its entirety, designated AAV/hu.31 and AAV/hu. 32 is particularly preferred; and the AAV variant shells described by Chatterjee in U.S. Patent No. 8,628,966, U.S. Patent No. 8,927,514, and Smith et al., 2014, Mol Ther 22: 1625-1634, each of which is Incorporated by reference in its entirety. In addition, the AAV-TT vector disclosed by Tordo et al. ( Brain 141:2014-31, 2018; incorporated herein by reference in its entirety) incorporates conserved amino acid sequences in natural AAV2 isolates and can also Use in conjunction with the compositions and methods of the present disclosure. Compared to AAV2, AAV9, and AAVrh10, AAV-TT variant capsids exhibit improved neurotropism and robust distribution throughout the CNS. Similarly, the AAV-DJ8 vector disclosed by Hammond et al. ( PLoS ONE 12(2):e0188830, 2017; incorporated herein by reference in its entirety) exhibits excellent neurotropism and may be suitable for compositions with the present disclosure. and methods are applicable.
在特定實例中,本揭露之特徵為 AAV9 載體,包括人工基因體,包括 (i) 含有編碼抑制性 RNA 序列 (例如,SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 226 至 SEQ ID NO: 229 以及 SEQ ID NO: 238 至 SEQ ID NO: 241 中之任一者) 之多核苷酸的表現卡匣,其處於調節元件之控制下且側接 ITR;及 (ii) 病毒殼體,其具有 AAV9 殼體蛋白之胺基酸序列或與 AAV9 殼體蛋白之胺基酸序列至少 95%、96%、97%、98%、99% 或 99.9% 相同,同時保留 AAV9 殼體之生物學功能。所編碼的 AAV9 殼體可具有美國專利號 7,906,111 (該專利以引用方式以其整體併入本文) 中提出的 SEQ ID NO: 116 之序列,其具有 1、2、3、4、5、6、7、8、9、10、11、12、13、14、15、16、17、18、19、20、21、22、23、24、25、26、27、28、29 或 30 個胺基酸取代並保留 AAV9 殼體之生物學功能。In specific examples, the present disclosure features AAV9 vectors, including artificial genomes, including (i) containing inhibitory RNA sequences (e.g., SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 226 to SEQ ID NO: 229 and SEQ ID NO: 238 to SEQ ID NO : any of 241) a polynucleotide expression cassette that is under the control of a regulatory element and flanked by an ITR; and (ii) a viral capsid that has the amino acid sequence of the AAV9 capsid protein or is identical to The amino acid sequence of the AAV9 capsid protein is at least 95%, 96%, 97%, 98%, 99% or 99.9% identical, while retaining the biological function of the AAV9 capsid. The encoded AAV9 capsid may have the sequence of SEQ ID NO: 116 set forth in U.S. Patent No. 7,906,111, which is incorporated by reference in its entirety, having 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29 or 30 amine groups The acid replaces and retains the biological function of the AAV9 capsid.
本文亦提供包括人工基因體的 AAVrh10 載體,其包括 (i) 含有多核苷酸的表現卡匣,其處於調節元件控制下且側接 ITR;及 (ii) 病毒殼體,其具有 AAVrh10 殼體蛋白之胺基酸序列或與 AAVrh10 殼體蛋白之胺基酸序列至少 95%、96%、97%、98%、99% 或 99.9% 相同,同時保留 AAVrh10capsid 殼體之生物學功能。所編碼的 AAVrh10 殼體可具有美國專利號 9,790,427 (該專利以引用方式以其整體併入本文) 中提出的 SEQ ID NO: 81 之序列,其具有 1、2、3、4、5、6、7、8、9、10、11、12、13、14、15、16、17、18、19、20、21、22、23、24、25、26、27、28、29 或 30 個胺基酸取代並保留 AAVrh10 殼體之生物學功能。Also provided herein are AAVrh10 vectors that include artificial genomes that include (i) a polynucleotide-containing expression cassette that is under the control of regulatory elements and flanked by ITRs; and (ii) a viral capsid that has an AAVrh10 capsid protein The amino acid sequence may be at least 95%, 96%, 97%, 98%, 99% or 99.9% identical to the amino acid sequence of the AAVrh10 capsid protein, while retaining the biological function of the AAVrh10capsid capsid. The encoded AAVrh10 capsid may have the sequence of SEQ ID NO: 81 set forth in U.S. Patent No. 9,790,427, which is incorporated by reference in its entirety, with 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29 or 30 amine groups The acid replaces and retains the biological function of the AAVrh10 capsid.
可選擇基因調節元件以在哺乳動物細胞 (例如,神經元) 中發揮功能。所得構建體含有可操作地連接的組件,且側接 (5' 及 3') 功能性 AAV ITR 序列。特定實例包括衍生自 AAV 血清型的載體,該等 AAV 血清型具有哺乳動物 CNS 細胞 (特定而言,神經元) 之趨性及在該等細胞中之高轉導效率。本專利申請中提供對不同血清型轉導效率的回顧及比較。在某些實例中,基於 AAV2、AAV5、AAV9 及 AAVrh10 的載體引導多核苷酸在 CNS 中的長期表現,例如,藉由轉導神經元及/或神經膠質細胞。Gene regulatory elements can be selected to function in mammalian cells (e.g., neurons). The resulting construct contains operably linked components flanked (5' and 3') by functional AAV ITR sequences. Specific examples include vectors derived from AAV serotypes that have tropism for mammalian CNS cells (specifically, neurons) and high transduction efficiency in such cells. A review and comparison of the transduction efficiencies of different serotypes is provided in this patent application. In certain examples, AAV2, AAV5, AAV9, and AAVrh10-based vectors direct long-term expression of polynucleotides in the CNS, for example, by transducing neurons and/or glial cells.
可以藉由將所選序列直接插入主要 AAV 開讀框 (「ORF」) 已自其切除的 AAV 基因體內來構建側接 AAV ITR 的目標多核苷酸 (例如,編碼本文所述抑制性 RNA 劑的多核苷酸) 之 AAV 表現載體。AAV 基因體之其他部分也可缺失,只要保留足夠的 ITR 部分以允許複製及包裝功能。可使用本領域習知之技術設計此類構建體。參見,例如,美國專利號 5,173,414 及 5,139,941;國際公開號 WO 92/01070 (1992 年 1 月 23 日公開) 及 WO 93/03769 (1993 年 3 月 4 日公開)。替代地,AAV ITR 可使用標準核酸連接技術從病毒基因體或從含有該病毒基因體的 AAV 載體中切除,並融合到存在於另一載體中的所選核酸構建體之 5' 及 3' 端。含有 ITR 的 AAV 載體已在例如美國專利號 5,139,941 中描述。特定而言,其中描述了數種 AAV 載體,它們可從美國典型培養物保藏中心 (「ATCC」) 在登錄號 53222、53223、53224、53225 及 53226 下獲得。此外,可以合成地產生嵌合基因以包括相對於一個或多個所選核酸序列排列在 5' 及 3' 的 AAV ITR 序列。可以使用用於在哺乳動物 CNS 細胞中表現嵌合基因序列的較佳密碼子,並且在某些情況下,可以藉由習知的方法進行多核苷酸的密碼子優化。完全嵌合序列由藉由標準方法製備的重疊多核苷酸組裝而成。為了產生 AAV 病毒顆粒,使用已知技術諸如藉由轉染將 AAV 表現載體引入合適的宿主細胞內。多種轉染技術為本領域周知的。特別合適的轉染方法包括磷酸鈣共沉澱、直接顯微注射到經培養之細胞內、電穿孔、脂質體介導的基因轉移、脂質介導的轉導及使用高速微射彈粒的核酸輸送。Target polynucleotides flanking the AAV ITR (e.g., encoding inhibitory RNA agents described herein) can be constructed by inserting selected sequences directly into the AAV gene from which the primary AAV open reading frame ("ORF") has been excised. polynucleotide) AAV expression vector. Other portions of the AAV genome can be deleted as long as sufficient portions of the ITR are retained to allow replication and packaging functions. Such constructs can be designed using techniques well known in the art. See, for example, U.S. Patent Nos. 5,173,414 and 5,139,941; International Publication Nos. WO 92/01070 (published January 23, 1992) and WO 93/03769 (published March 4, 1993). Alternatively, the AAV ITR can be excised from the viral genome or from an AAV vector containing the viral genome using standard nucleic acid ligation techniques and fused to the 5' and 3' ends of a selected nucleic acid construct present in another vector . ITR-containing AAV vectors have been described, for example, in U.S. Patent No. 5,139,941. In particular, several AAV vectors are described and are available from the American Type Culture Collection ("ATCC") under accession numbers 53222, 53223, 53224, 53225, and 53226. Additionally, chimeric genes can be synthetically generated to include AAV ITR sequences arranged 5' and 3' relative to one or more selected nucleic acid sequences. Preferred codons for expression of the chimeric gene sequence in mammalian CNS cells can be used, and in some cases, codon optimization of the polynucleotide can be performed by conventional methods. Complete chimeric sequences are assembled from overlapping polynucleotides prepared by standard methods. To produce AAV virions, the AAV expression vector is introduced into a suitable host cell using known techniques such as by transfection. A variety of transfection techniques are well known in the art. Particularly suitable transfection methods include calcium phosphate co-precipitation, direct microinjection into cultured cells, electroporation, liposome-mediated gene transfer, lipid-mediated transduction, and nucleic acid delivery using high-velocity microprojectiles. .
例如,本揭露之特定病毒載體除了包括本揭露之核酸序列 (例如,SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 226 至 SEQ ID NO: 229 以及 SEQ ID NO: 238 至 SEQ ID NO: 241 中之任一者) 之外,亦可包括具有源自 AAV2 病毒的 ITR 的 AAV 載體質體之主鏈;啟動子諸如神經元啟動子諸如 hSyn 啟動子及/或 CaMKII 啟動子,有或沒有野生型或突變形式的 WPRE;以及兔 β-珠蛋白多腺苷酸序列 (參見表 11 及表 12)。若需要,在本文所述的構建體中,hSyn 啟動子及 CaMKII 啟動子可經含有巨細胞病毒增強子 (例如,CAG 或 CBA)、U6、H1 或 7SK 啟動子的組成型啟動子替換。For example, the specific viral vectors of the present disclosure include, in addition to the nucleic acid sequences of the present disclosure (e.g., SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID In addition to any one of NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 226 to SEQ ID NO: 229, and SEQ ID NO: 238 to SEQ ID NO: 241), it can also Comprises the backbone of an AAV vector plasmid with an ITR derived from an AAV2 virus; a promoter such as a neuronal promoter such as the hSyn promoter and/or the CaMKII promoter, with or without wild-type or mutant forms of WPRE; and rabbit β- Globin polyadenylation sequence (see Table 11 and Table 12). If desired, in the constructs described herein, the hSyn promoter and the CaMKII promoter can be replaced by a constitutive promoter containing a cytomegalovirus enhancer (e.g., CAG or CBA), U6, H1, or 7SK promoter.
本揭露進一步涉及一種 rAAV,其包括 (i) 含有多核苷酸的表現卡匣,其處於調節元件的控制下且側接 ITR,及 (ii) AAV 殼體,其中該多核苷酸編碼抑制性 RNA (例如,ASO,諸如 siRNA、shRNA、miRNA 或 shmiRNA,特定而言,具有以下中之任一者之核酸序列的抑制性 RNA:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 226 至 229 以及 SEQ ID NO: 238 至 241 或其變體,該變體與以下中之任一者的核酸序列具有至少 85% (至少 85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 226 至 229 以及 SEQ ID NO: 238 至 241),該抑制性 RNA 特異性地結合至 Grik2mRNA (例如,以下中描述的 Grik2mRNA 之部分或區域中之任一者:SEQ ID NO: 164 至 SEQ ID NO: 193) 之至少一部分或區域並且抑制 (例如,敲低) 細胞 (例如,神經元) 中 GluK2 蛋白的表現。 The present disclosure further relates to a rAAV comprising (i) an expression cassette containing a polynucleotide that is under the control of a regulatory element and flanked by an ITR, and (ii) an AAV capsid, wherein the polynucleotide encodes an inhibitory RNA (For example, ASO, such as siRNA, shRNA, miRNA or shmiRNA, specifically, an inhibitory RNA having the nucleic acid sequence of any of the following: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 226 to 229 and SEQ ID NO: 238 to 241 or variants thereof , the variant shares at least 85% (at least 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62. SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 226 to 229 and SEQ ID NO: 238 to 241), the inhibitory RNA specifically Binds to at least a portion or region of Grik2 mRNA (e.g., any of the portions or regions of Grik2 mRNA described in: SEQ ID NO: 164 to SEQ ID NO: 193) and inhibits (e.g., knocks down) the cell ( For example, the expression of GluK2 protein in neurons).
AAV 載體可包括例如結合至 Grik2mRNA 的抑制性 RNA (例如,siRNA、shRNA、miRNA 或 shmiRNA) 序列,以及 hSyn 啟動子。例如,AAV 載體可含有:以下中之任一者的核酸序列:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 226 至 229 以及 SEQ ID NO: 238 至 241 或其變體,該變體與以下中之任一者的核酸序列具有至少 85% (至少 85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 226 至 SEQ ID NO: 229 以及 SEQ ID NO: 238 至 SEQ ID NO: 241;及 hSyn 啟動子 (例如,具有與以下中之任一者之核酸序列的 hSyn 啟動子:SEQ ID NO: 194 至 SEQ ID NO: 198 或其變體,該變體與以下中之任一者之核酸序列具有至少 85% (例如,至少 85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 194-198)。 AAV vectors may include, for example, inhibitory RNA (eg, siRNA, shRNA, miRNA, or shmiRNA) sequences that bind to Grik2 mRNA, and the hSyn promoter. For example, an AAV vector may contain the nucleic acid sequence of any of: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO : 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 226 to 229 and SEQ ID NO: 238 to 241 or variants thereof, which have at least the same nucleic acid sequence as any of the following 85% (at least 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more Multiple (e.g., 100%)) sequence identity: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 226 to SEQ ID NO: 229, and SEQ ID NO: 238 to SEQ ID NO: 241; and an hSyn promoter (e.g., having a hSyn promoter of a nucleic acid sequence: SEQ ID NO: 194 to SEQ ID NO: 198 or a variant thereof that shares at least 85% (e.g., at least 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity Sex: SEQ ID NO: 194-198).
替代地,AAV 載體可包括結合至 Grik2mRNA 並抑制其表現的抑制性 RNA (例如,siRNA、shRNA、miRNA 或 shmiRNA) 序列,以及 CaMKII 啟動子。例如,所揭示的 AAV 載體可包括以下中之任一者的核酸序列:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 226 至 229、SEQ ID NO: 238 至 241 以及 SEQ ID NO: 258 或其變體,該變體與以下中之任一者的核酸序列具有至少 85% (至少 85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 226 至 SEQ ID NO: 229、SEQ ID NO: 238 至 SEQ ID NO: 241 以及 SEQ ID NO: 258;及 CaMKII 啟動子 (例如,具有與以下中之任一者之核酸序列的 CaMKII 啟動子:SEQ ID NO: 199 至 SEQ ID NO: 204 或其變體,該變體與以下中之任一者之核酸序列具有至少 85% (例如,至少 85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 199-204)。在一些實施例中,AAV 載體可包括以下中之任一者的核酸序列:SEQ ID NO: 4、SEQ ID NO: 19、SEQ ID NO: 34、SEQ ID NO: 135、SEQ ID NO: 141、SEQ ID NO: 147 及 SEQ ID NO: 258 或其變體,該變體與以下中之任一者之核酸序列具有至少 85% (至少 85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 4、SEQ ID NO: 19、SEQ ID NO: 34、SEQ ID NO: 135、SEQ ID NO: 141、SEQ ID NO: 147 及 SEQ ID NO: 258。 Alternatively, the AAV vector may include an inhibitory RNA (eg, siRNA, shRNA, miRNA, or shmiRNA) sequence that binds to Grik2 mRNA and inhibits its expression, as well as the CaMKII promoter. For example, the disclosed AAV vectors may include the nucleic acid sequence of any of the following: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 226 to 229, SEQ ID NO: 238 to 241, and SEQ ID NO: 258 or a variant thereof, which variant is identical to one of the following Any nucleic acid sequence has at least 85% (at least 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97% , 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 226 to SEQ ID NO: 229, SEQ ID NO: 238 to SEQ ID NO: 241 and SEQ ID NO: 258; and CaMKII A promoter (e.g., a CaMKII promoter having a nucleic acid sequence corresponding to any of the following: SEQ ID NO: 199 to SEQ ID NO: 204 or a variant thereof having a nucleic acid sequence corresponding to any of the following) Have at least 85% (e.g., at least 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity: SEQ ID NO: 199-204). In some embodiments, the AAV vector may include the nucleic acid sequence of any of the following: SEQ ID NO: 4, SEQ ID NO: 19, SEQ ID NO: 34, SEQ ID NO: 135, SEQ ID NO: 141, SEQ ID NO: 147 and SEQ ID NO: 258 or variants thereof, which have at least 85% (at least 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 4, SEQ ID NO: 19, SEQ ID NO: 34, SEQ ID NO: 135, SEQ ID NO: 141, SEQ ID NO: 147 and SEQ ID NO: 258.
反轉錄病毒載體retroviral vector
用於本文所述的方法及組成物中的輸送載體可為反轉錄病毒載體。可用於本文所述的方法及組成物的一個類型之反轉錄病毒載體為慢病毒載體。慢病毒載體 (LV) 為反轉錄病毒的一個子集,可高效轉導廣泛的分裂及非分裂細胞類型,賦予多核苷酸以穩定、長期的表現。關於包裝及轉導 LV 的優化策略之概述提供在 Delenda, The Journal of Gene Medicine 6: S125 (2004) 中,其揭露以引用方式併入本文。Delivery vectors used in the methods and compositions described herein can be retroviral vectors. One type of retroviral vectors useful in the methods and compositions described herein are lentiviral vectors. Lentiviral vectors (LVs) are a subset of retroviruses that efficiently transduce a wide range of dividing and non-dividing cell types, conferring stable, long-term expression of polynucleotides. An overview of optimized strategies for packaging and transducing LV is provided in Delenda, The Journal of Gene Medicine 6: S125 (2004), the disclosure of which is incorporated herein by reference.
基於慢病毒的基因轉移技術的使用依賴於攜帶高度缺失之病毒基因體的重組慢病毒顆粒的活體外產生,此等顆粒中容納有目標多核苷酸。特定而言,重組慢病毒係透過下在以下之允許細胞株中的反式共表現來回收: (1) 包裝構建體,亦即,同時表現 Gag-Pol 前體及 Rev 的載體 (或者以反式表現);(2) 表現外膜受體的載體,通常具有異源屬性;及 (3) 轉移載體,由去除全部開讀框的病毒 cDNA 組成,但保留了複製、殼體化及表現所需的序列,其中插入了待表現的序列。 The use of lentivirus-based gene transfer technology relies on the in vitro production of recombinant lentiviral particles carrying highly deleted viral genomes that contain target polynucleotides. Specifically, recombinant lentiviruses are recovered by trans co-expression in the following permissive cell lines: (1) packaging constructs, that is, vectors expressing both the Gag-Pol precursor and Rev (or in trans); (2) vectors expressing outer membrane receptors, often of heterologous nature; and (3) The transfer vector consists of viral cDNA with all open reading frames removed, but the sequences required for replication, encapsidation and expression are retained, into which the sequence to be expressed is inserted.
本文所述的方法及組成物中使用的 LV 可包括 5' 長末端重複序列 (LTR)、HIV 訊息序列、HIV Psi 訊息 5' 剪接位點 (SD)、δ-GAG 元件、Rev 響應序列元件 (RRE)、3' 剪接位點 (SA)、延長因子 (EF) 1-α 啟動子及 3'-自失活 LTR (SIN-LTR) 中之一者或多者。慢病毒載體視情況包括中央多聚嘌呤段 (cPPT) 及土撥鼠肝炎病毒轉錄後調節元件 (WPRE),如 US 6,136,597 中所述,由於其屬於 WPRE,其揭露以引用方式併入本文。慢病毒載體可進一步包括 pHR' 主鏈,其可包括例如如下所提供的。The LV used in the methods and compositions described herein may include 5' long terminal repeats (LTR), HIV message sequence, HIV Psi message 5' splice site (SD), delta-GAG element, Rev response sequence element ( RRE), 3' splice site (SA), elongation factor (EF) 1-α promoter, and 3'-self-inactivating LTR (SIN-LTR). The lentiviral vector optionally includes a central polypurine segment (cPPT) and a woodchuck hepatitis virus post-transcriptional regulatory element (WPRE), as described in US 6,136,597, the disclosure of which is incorporated herein by reference as it is a WPRE. The lentiviral vector may further include a pHR' backbone, which may include, for example, as provided below.
Lu 等人,Journal of Gene Medicine 6:963 (2004) 中描述的 Lentigen LV 可用於表現 DNA 分子及/或轉導細胞。本文所述的方法及組成物中使用的 LV 可包括 5' 長末端重複序列 (LTR)、HIV 訊息序列、HIV Psi 訊息 5' 剪接位點 (SD)、δ-GAG 元件、Rev 響應序列元件 (RRE)、3' 剪接位點 (SA)、延長因子 (EF) 1-α 啟動子及 3'-自失活 L TR (SIN-LTR)。視情況,此等區域中之一者或多者經執行類似功能的另一區域取代。Lentigen LV, described in Lu et al., Journal of Gene Medicine 6:963 (2004), can be used to express DNA molecules and/or transduce cells. The LV used in the methods and compositions described herein may include 5' long terminal repeats (LTR), HIV message sequence, HIV Psi message 5' splice site (SD), delta-GAG element, Rev response sequence element ( RRE), 3' splice site (SA), elongation factor (EF) 1-α promoter, and 3'-self-inactivating L TR (SIN-LTR). As appropriate, one or more of these areas is replaced by another area that performs a similar function.
增強子元件可用於增加經修飾之 DNA 分子的表現或增加慢病毒整合效率。用於本文所述的方法及組成物中的 LV 可包括 nef 序列。用於本文所述的方法及組成物中的 LV 可包括提高載體整合的 cPPT 序列。cPPT 用作 (+) 股 DNA 合成的第二起點,並在其天然 HIV 基因體的中部引入部分股重疊。在轉移載體主鏈中引入 cPPT 序列大大增加核轉運及整合到標靶細胞 DNA 中的基因體之總量。用於本文所述的方法及組成物中的 LV 可包括土撥鼠轉錄後調節元件 (WPRE)。WPRE 在轉錄水平上起作用,藉由促進轉錄本的核輸出及/或藉由增加新生轉錄本的多腺苷酸化效率,從而增加細胞中的 mRNA 之總量。將 WPRE 添加至 LV 導致來自數種不同啟動子的多核苷酸表現水平在活體外及活體內得到顯著增強。用於本文所述的方法及組成物中的 LV 可包括 cPPT 序列及 WPRE 序列兩者。載體亦可包括允許從單個啟動子表現多個多肽的 IRES 序列。Enhancer elements can be used to increase the expression of modified DNA molecules or to increase lentiviral integration efficiency. LVs used in the methods and compositions described herein may include nef sequences. LVs used in the methods and compositions described herein may include cPPT sequences that enhance vector integration. cPPT serves as a second starting point for (+) strand DNA synthesis and introduces partial strand overlap in the middle of its native HIV genome. Introduction of cPPT sequences into the transfer vector backbone greatly increases the amount of nuclear transport and integration into target cell DNA. LVs used in the methods and compositions described herein may include woodchuck post-transcriptional regulatory elements (WPRE). WPRE acts at the transcriptional level by promoting nuclear export of transcripts and/or by increasing polyadenylation efficiency of nascent transcripts, thereby increasing the total amount of mRNA in the cell. Addition of WPRE to LV resulted in significantly enhanced expression levels of polynucleotides from several different promoters in vitro and in vivo. LVs used in the methods and compositions described herein can include both cPPT sequences and WPRE sequences. Vectors may also include IRES sequences that allow expression of multiple polypeptides from a single promoter.
除了 IRES 序列之外,允許表現多個多核苷酸的其他元件也是有用的。用於本文所述的方法及組成物中的載體可包括允許表現超過一個多核苷酸的多個啟動子。允許表現未來鑑定的多個多核苷酸的其他元件是有用的,並且可用於適合與本文所述的組成物及方法合用的載體中。用於本文所述的方法及組成物的載體可為臨床級載體。In addition to IRES sequences, other elements that allow the expression of multiple polynucleotides may also be useful. Vectors used in the methods and compositions described herein may include multiple promoters that allow expression of more than one polynucleotide. Additional elements that allow expression of multiple polynucleotides identified in the future are useful and can be used in vectors suitable for use with the compositions and methods described herein. Carriers used in the methods and compositions described herein can be clinical grade carriers.
據此,反轉錄病毒載體可與所揭示的方法及組成物結合使用。由於反轉錄病毒能夠將其等之基因整合到宿主基因體中、轉移大量外來遺傳物質、感染廣泛的物種及細胞類型以及被包裝在特定細胞株中,故可選擇反轉錄病毒作為基因輸送載體。為了構建反轉錄病毒載體,將編碼目標基因的核酸插入病毒基因體中來代替特定的病毒序列,以產生複製缺陷型病毒。為了產生病毒顆粒,構建了含有 gag、pol 及/或 env 基因但不含 LTR 及/或包裝組分的包裝細胞株。當將含有 cDNA 的重組質體連同反轉錄病毒 LTR 及包裝序列引入該細胞株時 (例如,藉由磷酸鈣沉澱),包裝序列允許重組質體的 RNA 轉錄本被包裝到病毒顆粒中,然後分泌到培養基中。然後收集含有重組反轉錄病毒的培養基,視情況濃縮,並用於基因轉移。反轉錄病毒載體能夠感染多種細胞類型。Accordingly, retroviral vectors may be used in conjunction with the disclosed methods and compositions. Retroviruses can be chosen as gene delivery vectors because they can integrate their genes into the host genome, transfer large amounts of foreign genetic material, infect a wide range of species and cell types, and be packaged in specific cell strains. To construct retroviral vectors, nucleic acid encoding a gene of interest is inserted into the viral genome in place of specific viral sequences to produce a replication-deficient virus. To produce virions, packaging cell lines were constructed containing gag, pol and/or env genes but without LTR and/or packaging components. When a recombinant plasmid containing cDNA is introduced into this cell line along with the retroviral LTR and packaging sequence (e.g., by calcium phosphate precipitation), the packaging sequence allows the RNA transcript of the recombinant plasmid to be packaged into viral particles and then secreted. into the culture medium. The culture medium containing the recombinant retrovirus is then collected, optionally concentrated, and used for gene transfer. Retroviral vectors are capable of infecting a variety of cell types.
此外,慢病毒載體可與本文所揭示的方法及組成物結合使用。據此,本揭露之一個目標涉及包括抑制性 RNA (例如,siRNA、shRNA、miRNA 或 shmiRNA) 序列 (例如,以下中所述的抑制性 RNA 序列中之任一者:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 226 至 SEQ ID NO: 229、SEQ ID NO: 238 至 SEQ ID NO: 241 及 SEQ ID NO: 258) 的慢病毒載體,該慢病毒載體結合至 Grik2mRNA 並抑制其表現。 Additionally, lentiviral vectors can be used in conjunction with the methods and compositions disclosed herein. Accordingly, one object of the present disclosure relates to an inhibitory RNA (e.g., siRNA, shRNA, miRNA, or shmiRNA) sequence (e.g., any of the inhibitory RNA sequences described in: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 226 to SEQ ID NO : 229, SEQ ID NO: 238 to SEQ ID NO: 241 and SEQ ID NO: 258), the lentiviral vector binds to Grik2 mRNA and inhibits its expression.
據此,慢病毒載體可包括以下中之任一者的核酸序列:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 226 至 229、SEQ ID NO: 238 至 241 以及 SEQ ID NO: 258 或其變體,該變體與以下中之任一者的核酸序列具有至少 85% (至少 85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 226 至 SEQ ID NO: 229、SEQ ID NO: 238 至 SEQ ID NO: 241 及 SEQ ID NO: 258。 慢病毒載體可包括結合至 Grik2mRNA 並抑制其表現的抑制性 RNA 序列 (例如,siRNA、shRNA、miRNA 或 shmiRNA),以及 hSyn 啟動子。 Accordingly, the lentiviral vector may include the nucleic acid sequence of any one of: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 226 to 229, SEQ ID NO: 238 to 241, and SEQ ID NO: 258 or a variant thereof, which variant is consistent with any of the following One has at least 85% (at least 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 226 to SEQ ID NO: 229, SEQ ID NO: 238 to SEQ ID NO: 241 and SEQ ID NO: 258. Lentiviral vectors can include inhibitory RNA sequences (eg, siRNA, shRNA, miRNA, or shmiRNA) that bind to Grik2 mRNA and inhibit its expression, as well as the hSyn promoter.
慢病毒載體可包括例如結合至 Grik2mRNA 的抑制性 RNA (例如,siRNA、shRNA、miRNA 或 shmiRNA) 序列,以及 hSyn 啟動子。例如,慢病毒載體可含有:以下中之任一者的核酸序列:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 226 至 229、SEQ ID NO: 238 至 241 以及 SEQ ID NO: 258 至 SEQ ID NO: 260 或其變體,該變體與以下中之任一者的核酸序列具有至少 85% (至少 85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 226 至 SEQ ID NO: 229、SEQ ID NO: 238 至 SEQ ID NO: 241 以及 SEQ ID NO: 258 至 260;及 hSyn 啟動子 (例如,具有與以下中之任一者之核酸序列的 hSyn 啟動子:SEQ ID NO: 194 至 SEQ ID NO: 198 或其變體,該變體與以下中之任一者之核酸序列具有至少 85% (例如,至少 85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 194-198)。 Lentiviral vectors can include, for example, inhibitory RNA (eg, siRNA, shRNA, miRNA, or shmiRNA) sequences that bind to Grik2 mRNA, and the hSyn promoter. For example, a lentiviral vector may contain the nucleic acid sequence of any one of: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 226 to 229, SEQ ID NO: 238 to 241 and SEQ ID NO: 258 to SEQ ID NO: 260 or variants thereof, which The nucleic acid sequence has at least 85% (at least 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 226 to SEQ ID NO: 229, SEQ ID NO: 238 to SEQ ID NO: 241 and SEQ ID NO : 258 to 260; and an hSyn promoter (e.g., an hSyn promoter having a nucleic acid sequence consistent with any of the following: SEQ ID NO: 194 to SEQ ID NO: 198 or a variant thereof that is consistent with the following) Any of the nucleic acid sequences has at least 85% (e.g., at least 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96% , 97%, 98%, 99% or more (e.g., 100%)) sequence identity: SEQ ID NO: 194-198).
替代地,慢病毒載體可包括結合至 Grik2mRNA 並抑制其表現的抑制性 RNA (例如,siRNA、shRNA、miRNA 或 shmiRNA) 序列,以及 CaMKII 啟動子。例如,所揭示的慢病毒載體可包括以下中之任一者的核酸序列:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 226 至 229、SEQ ID NO: 238 至 241 以及 SEQ ID NO: 258 至 SEQ ID NO: 260 或其變體,該變體與以下中之任一者的核酸序列具有至少 85% (至少 85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 226 至 SEQ ID NO: 229、SEQ ID NO: 238 至 SEQ ID NO: 241 以及 SEQ ID NO: 258 至 260;及 CaMKII 啟動子 (例如,具有與以下中之任一者之核酸序列的 CaMKII 啟動子:SEQ ID NO: 199 至 SEQ ID NO: 204 或其變體,該變體與以下中之任一者之核酸序列具有至少 85% (例如,至少 85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 199-204)。 Alternatively, the lentiviral vector may include an inhibitory RNA (eg, siRNA, shRNA, miRNA, or shmiRNA) sequence that binds to Grik2 mRNA and inhibits its expression, as well as the CaMKII promoter. For example, the disclosed lentiviral vectors can include the nucleic acid sequence of any one of: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 226 to 229, SEQ ID NO: 238 to 241 and SEQ ID NO: 258 to SEQ ID NO: 260 or variants thereof, The variant shares a nucleic acid sequence identity of at least 85% with any of the following (at least 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95 %, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62 , SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 226 to SEQ ID NO: 229, SEQ ID NO: 238 to SEQ ID NO: 241 and SEQ ID NO: 258 to 260; and a CaMKII promoter (e.g., a CaMKII promoter having a nucleic acid sequence corresponding to any of: SEQ ID NO: 199 to SEQ ID NO: 204 or a variant thereof, which variant is identical to The nucleic acid sequences have at least 85% (e.g., at least 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity: SEQ ID NO: 199-204).
慢病毒為複雜的反轉錄病毒,其除了包括常見的反轉錄病毒基因 gag、pol 及 env 外,亦包含其他具有調節或結構功能的基因。更高之複雜性使病毒能夠調節其生命週期,就像在潛伏感染過程中一樣。慢病毒的一些實例包括人類免疫缺乏病毒 (HIV1、HIV2) 及猿猴免疫缺乏病毒 (SIV)。慢病毒載體已經藉由多重減弱 HIV 毒力基因來產生,例如,使基因 env、vif、vpr、vpu 及 nef 缺失,從而使得載體為生物學上安全的。慢病毒載體為本領域已知的,參見,例如,美國專利號 6,013,516 及 5,994,136,其兩者皆以引用方式併入本文。一般而言,載體為基於質體或基於病毒的,並且經配置為攜帶用於併入外來核酸以及用於選擇核酸及將核酸轉移到宿主細胞內的必需序列。目標載體至 gag、pol 及 env 基因亦為本領域已知的。因此,相關基因經選殖到所選載體中,然後用於使目標標靶細胞轉形。能夠感染非分裂細胞的重組慢病毒,其中合適之宿主細胞經兩個或多個攜帶包裝蛋白 (亦即,gag、pol 及 env) 以及 rev 及 tat 的載體轉染,描述於美國專利號 5,994,136 中,其以引用方式併入本文。該公開提供了可提供編碼病毒 gag 及 pol 基因的核酸的第一載體以及可提供編碼病毒 env 的核酸以產生包裝細胞的第二載體。將提供異源基因的載體引入該包裝細胞內,得到生產者細胞,其釋放攜帶目標外源基因的感染性病毒顆粒。env 可為允許人類及其他物種細胞之轉導的兩性外膜蛋白。通常,本揭露之核酸分子或載體包括「控制序列」,其統指啟動子序列、多腺苷酸化訊息序列、轉錄終止序列、上游調節域、複製起點、內部核醣體進入位點 (「IRES」)、增強子等,其等共同提供受體細胞中編碼序列的複制、轉錄及轉譯。並非全部此等控制序列皆需要始終存在,只要所選編碼序列能夠在適當的宿主細胞中複製、轉錄及轉譯即可。Lentiviruses are complex retroviruses that, in addition to the common retroviral genes gag, pol, and env, also contain other genes with regulatory or structural functions. Greater complexity enables the virus to regulate its life cycle, just as it does during latent infection. Some examples of lentiviruses include human immunodeficiency viruses (HIV1, HIV2) and simian immunodeficiency viruses (SIV). Lentiviral vectors have been generated by multiple attenuating HIV virulence genes, such as deletion of the genes env, vif, vpr, vpu, and nef, thereby rendering the vector biologically safe. Lentiviral vectors are known in the art, see, for example, U.S. Patent Nos. 6,013,516 and 5,994,136, both of which are incorporated herein by reference. Generally, vectors are plasmid-based or viral-based and are configured to carry the necessary sequences for the incorporation of foreign nucleic acids as well as for the selection and transfer of nucleic acids into host cells. Targeting vectors to gag, pol and env genes are also known in the art. Therefore, the relevant genes are selected and cloned into the vector of choice and then used to transform the target cells of interest. Recombinant lentiviruses capable of infecting non-dividing cells, in which a suitable host cell is transfected with two or more vectors carrying packaging proteins (i.e., gag, pol, and env) as well as rev and tat, are described in U.S. Patent No. 5,994,136 , which is incorporated herein by reference. This disclosure provides a first vector that provides nucleic acid encoding viral gag and pol genes and a second vector that provides nucleic acid encoding viral env to generate packaging cells. A vector providing a heterologous gene is introduced into the packaging cell to obtain a producer cell, which releases infectious virus particles carrying the target foreign gene. env may be an amphiphilic outer membrane protein that allows transduction of cells of humans and other species. Generally, the nucleic acid molecules or vectors of the present disclosure include "control sequences", which collectively refer to promoter sequences, polyadenylation message sequences, transcription termination sequences, upstream regulatory domains, origins of replication, and internal ribosome entry sites ("IRES"). ), enhancers, etc., which together provide the replication, transcription and translation of coding sequences in recipient cells. Not all such control sequences need be present at all times, as long as the selected coding sequence is capable of replication, transcription and translation in the appropriate host cell.
對特定標靶細胞諸如海馬神經元例如 DGC 表現出趨性的核酸載體可用於輸送本文所述的抑制性多核苷酸。Nucleic acid vectors that exhibit tropism for specific target cells such as hippocampal neurons, e.g., DGCs, can be used to deliver inhibitory polynucleotides described herein.
病毒調節元件viral regulatory elements
病毒調節元件為用於將核酸分子引入宿主細胞內的輸送載體之組分。病毒調節元件視情況為反轉錄病毒調節元件。例如,病毒調節元件可為來自 HSC1 或 MSCV 的 LTR 及 gag 序列。反轉錄病毒調節元件可來自慢病毒,或者它們可為從其他基因體區域鑑定的異源序列。隨著其他病毒調節元件變得已知,此等病毒調節元件可與本文描述的方法及組成物合用。Viral regulatory elements are components of delivery vectors used to introduce nucleic acid molecules into host cells. Viral regulatory elements are optionally retroviral regulatory elements. For example, viral regulatory elements can be the LTR and gag sequences from HSC1 or MSCV. Retroviral regulatory elements can be derived from lentiviruses, or they can be heterologous sequences identified from other genome regions. As other viral regulatory elements become known, such viral regulatory elements may be used in conjunction with the methods and compositions described herein.
編碼encoding Grik2Grik2 抑制性多核苷酸的病毒載體Viral vectors of inhibitory polynucleotides
本揭露涉及用於輸送異源多核苷酸的核酸載體,其中該多核苷酸編碼特異性地結合 Grik2mRNA 並抑制 GluK2 蛋白在細胞中之表現的抑制性 RNA 劑 (例如,siRNA、shRNA、miRNA 或 shmiRNA) 構建體。因此,本揭露之一個目的為提供包括抑制性多核苷酸序列的載體,該多核苷酸序列與 Grik2mRNA 之至少一個區域或部分 (例如,選自以下中之任一者的 Grik2mRNA 之區域或部分中之任一者:SEQ ID NO: 164 至 SEQ ID NO: 193 或其變體,該變體與以下之任一者具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 164 至 SEQ ID NO: 193) 完全或基本上互補。本揭露之載體可包括與 Grik2mRNA 之一個或多個區域完全或基本上互補的抑制性多核苷酸序列的任何變體。此外,本揭露之載體可包括與編碼 GluK2 蛋白的任何變體的 Grik2mRNA 完全或基本上互補的抑制性多核苷酸序列的任何變體。 The present disclosure relates to nucleic acid vectors for delivering heterologous polynucleotides, wherein the polynucleotides encode inhibitory RNA agents (e.g., siRNA, shRNA, miRNA or shmiRNA) construct. Accordingly, one object of the present disclosure is to provide a vector comprising an inhibitory polynucleotide sequence that is associated with at least one region or portion of Grik2 mRNA (e.g., a region of Grik2 mRNA selected from any of the following or Any of the following: SEQ ID NO: 164 to SEQ ID NO: 193 or a variant thereof that is at least 85% identical to any of the following (e.g., at least 85%, 90%, 95%, 96 %, 97%, 98%, 99% or more (eg, 100%)) Sequence identity: SEQ ID NO: 164 to SEQ ID NO: 193) Complete or substantially complementary. Vectors of the present disclosure may include any variant of an inhibitory polynucleotide sequence that is completely or substantially complementary to one or more regions of Grik2 mRNA. Furthermore, vectors of the present disclosure may include any variant of an inhibitory polynucleotide sequence that is completely or substantially complementary to Grik2 mRNA encoding any variant of GluK2 protein.
據此,將編碼目標雙股 RNA 的 DNA 併入基因卡匣例如表現卡匣內,其中 DNA 之轉錄由啟動子及/或其他調節元件控制。將 DNA 併入表現目標 Grik2抑制性 RNA (例如,SEQ ID NO: 1 至 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 208 至 SEQ ID NO: 229、SEQ ID NO: 238 至 SEQ ID NO: 241、SEQ ID NO: 250 至 SEQ ID NO: 251 以及 SEQ ID NO: 256 至 SEQ ID NO: 261 中之任一者) 的載體之此類表現卡匣內,並藉由目標病毒載體封裝以輸送至標靶細胞。因此,本揭露之病毒載體編碼與任何 Grik2mRNA 轉錄本同功型 (例如,SEQ ID NO: 164 至 SEQ ID NO: 174 中之任一者) 雜交的反義 RNA。病毒載體編碼例如表 2、4、6 及 8 中所列的抑制性多核苷酸中之任一者。 Accordingly, DNA encoding the double-stranded RNA of interest is incorporated into a gene cassette, such as an expression cassette, where transcription of the DNA is controlled by a promoter and/or other regulatory elements. Incorporation of DNA expressing target Grik2 inhibitory RNA (e.g., SEQ ID NO: 1 to 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 208 to SEQ ID NO: 229, SEQ ID NO: 238 to SEQ ID NO: 241, SEQ ID NO: 250 to SEQ ID NO: 251 and SEQ ID NO: 256 to SEQ ID NO: 261) and are encapsulated by the target viral vector for delivery to the target cells. Thus, the viral vectors of the present disclosure encode antisense RNA that hybridizes to any Grik2 mRNA transcript isoform (eg, any of SEQ ID NO: 164 to SEQ ID NO: 174). The viral vector encodes, for example, any of the inhibitory polynucleotides listed in Tables 2, 4, 6, and 8.
本揭露之載體輸送編碼抑制性 RNA 的多核苷酸,該抑制性 RNA 辨識或結合至 Grik2mRNA 之至少一部分或區域 (例如,以下中所述的 Grik2mRNA 之區域或部分中之任一者:SEQ ID NO: 164 至 SEQ ID NO: 193 或其變體,該變體與以下中之任一者之核酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 164-193)。編碼抑制性 RNA 劑的異源多核苷酸可為更大的構建體或支架之一部分,該構建體或支架確保此類抑制性 RNA 在細胞 (例如,哺乳動物細胞,諸如人類細胞,諸如神經元細胞,諸如 DGC 或麩胺酸能錐狀神經元) 中的加工。編碼表 2 至 9 中所列的 siRNA 中之任一者的多核苷酸可包括微小 RNA 基因 (例如,E-miR-30、E-miR-218-1 或 E-miR-124-3 等) 之前體或一部分,諸如微小 RNA 基因之 5' 側翼序列、3' 側翼序列或環序列。在一些實施例中,編碼表 2 至 9 中所列的 siRNA 中之任一者的多核苷酸可包括一種或多種微小 RNA 基因 (例如,E-miR-30、E-miR-218-1 或 E-miR-124-3) 之前體或一部分。在一些實施例中,該多核苷酸可包括兩種或更多種微小 RNA 基因 (例如,E-miR-30、E-miR-218-1 或 E-miR-124-3) 之前體或一部分。在較佳實施例中,多核苷酸可包括 E-miR-30 及 E-miR-218-1 之前體或一部分。 Vectors of the present disclosure deliver polynucleotides encoding inhibitory RNAs that recognize or bind to at least a portion or region of Grik2 mRNA (e.g., any of the regions or portions of Grik2 mRNA described in: SEQ ID NO: 164 to SEQ ID NO: 193 or a variant thereof that shares at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%) the nucleic acid sequence of any of the following , 98%, 99% or more (e.g., 100%)) sequence identity: SEQ ID NO: 164-193). The heterologous polynucleotide encoding an inhibitory RNA agent can be part of a larger construct or scaffold that ensures the expression of such inhibitory RNA in cells (e.g., mammalian cells, such as human cells, such as neurons Processing in cells such as DGCs or glutamatergic pyramidal neurons. Polynucleotides encoding any of the siRNAs listed in Tables 2 to 9 may include microRNA genes (eg, E-miR-30, E-miR-218-1, or E-miR-124-3, etc.) Precursor or part, such as 5' flanking sequence, 3' flanking sequence or loop sequence of a microRNA gene. In some embodiments, a polynucleotide encoding any of the siRNAs listed in Tables 2 to 9 may include one or more microRNA genes (e.g., E-miR-30, E-miR-218-1 or E-miR-124-3) precursor or part. In some embodiments, the polynucleotide may include precursors or portions of two or more microRNA genes (e.g., E-miR-30, E-miR-218-1, or E-miR-124-3) . In preferred embodiments, the polynucleotide may include precursors or portions of E-miR-30 and E-miR-218-1.
據此,本揭露之一個目的涉及一種表現載體,其包括異源多核苷酸並含有:從5'至3',例如,啟動子 (例如,表 11 中描述的啟動子中之任一者)、視情況選用的內含子 (例如,表 12 中描述的內含子中之任一者)、編碼抑制 Grik2mRNA 表現的抑制性 RNA 劑之核苷酸序列 (例如,抑制性 RNA 劑,其具有以下中之任一者的核酸序列:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 208 至 229、SEQ ID NO: 238 至 241、SEQ ID NO: 250 至 251 以及 SEQ ID NO: 256 至 261 或其變體,該變體與以下中之任一者的核酸序列具有至少 85% (例如,至少 85%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 208 至 229、SEQ ID NO: 238 至 241、SEQ ID NO: 250 至 251 以及 SEQ ID NO: 256 至 261)、以及多腺苷酸序列 (例如,表 12 中所列的多腺苷酸序列中之任一者)。表現載體亦可包括:從 5' 反向末端重複序列 (ITR) 到 3' ITR,5' ITR (例如,表 12 中描述的 5' 或 3' ITR 序列中之任一者)、啟動子、視情況選用的內含子、編碼抑制 Grik2mRNA 表現的抑制性 RNA 的核苷酸序列、多核苷酸序列及 3' ITR。表現載體可進一步含有與任何前述載體元件接合的間隔子及/或連接子序列。 Accordingly, one object of the present disclosure relates to an expression vector comprising a heterologous polynucleotide and containing: from 5' to 3', e.g., a promoter (e.g., any of the promoters described in Table 11) , an optional intron (e.g., any of the introns described in Table 12), a nucleotide sequence encoding an inhibitory RNA agent that inhibits the expression of Grik2 mRNA (e.g., an inhibitory RNA agent that A nucleic acid sequence having any of the following: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO : 133 to SEQ ID NO: 147, SEQ ID NO: 208 to 229, SEQ ID NO: 238 to 241, SEQ ID NO: 250 to 251 and SEQ ID NO: 256 to 261 or variants thereof, which variants are consistent with the following The nucleic acid sequence of any one of the nucleic acid sequences has at least 85% (e.g., at least 85%, 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) sequence identity: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 208 to 229, SEQ ID NO: 238 to 241, SEQ ID NO: 250 to 251, and SEQ ID NO: 256 to 261), and polyadenylation sequences (e.g., the polyadenylation sequences listed in Table 12 any one in the sequence). The expression vector may also include: from the 5' inverted terminal repeat (ITR) to the 3' ITR, the 5' ITR (e.g., either of the 5' or 3' ITR sequences described in Table 12), a promoter, Optionally, the intron, the nucleotide sequence encoding the inhibitory RNA that inhibits the expression of Grik2 mRNA, the polynucleotide sequence and the 3' ITR are selected. The expression vector may further contain spacer and/or linker sequences joined to any of the aforementioned vector elements.
在特定實例中,表現載體或多核苷酸可包括編碼形成莖環結構的莖及環的核苷酸序列,其中該環包括編碼表 2 至 9 中所列的抑制性 RNA 劑中之任一者的核苷酸序列.例如,表現載體或多核苷酸可包括編碼環區域的核酸序列,其中該環區域可全部或部分地源自野生型微小 RNA 序列基因 (例如,E-miR-30、E- miR-218-1 或 E-miR-124-3 等) 或為完全人工的。在特定實例中,環區域可為 E-miR-30a 環序列。在一些實施例中,表現載體或多核苷酸可包括編碼兩個環區域的核酸序列,其中該等環區域可全部或部分地源自野生型微小 RNA 序列 (例如,E-miR-30、E-miR-218-1 或 E-miR-124-3)。在特定實施例中,環區域可包括 E-miR-30 環區域及 E-miR-218-1 環區域。In specific examples, the expression vector or polynucleotide may include nucleotide sequences encoding stems and loops forming a stem-loop structure, wherein the loops include encoding any of the inhibitory RNA agents listed in Tables 2-9 For example, the expression vector or polynucleotide may include a nucleic acid sequence encoding a loop region, wherein the loop region may be derived in whole or in part from a wild-type microRNA sequence gene (e.g., E-miR-30, E -miR-218-1 or E-miR-124-3, etc.) or completely artificial. In specific examples, the loop region can be an E-miR-30a loop sequence. In some embodiments, expression vectors or polynucleotides can include nucleic acid sequences encoding two loop regions, wherein the loop regions can be derived in whole or in part from wild-type microRNA sequences (e.g., E-miR-30, E -miR-218-1 or E-miR-124-3). In specific embodiments, the loop region may include an E-miR-30 loop region and an E-miR-218-1 loop region.
此外,該一個或多個莖環結構可以包括引導序列 (例如,反義 RNA 序列,諸如以下中之任一者:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 以及 SEQ ID NO: 242 至 SEQ ID NO: 245) 及隨從序列 (例如,以下中之任一者:SEQ ID NO: 31 至 SEQ ID NO: 45、SEQ ID NO: 80 至 SEQ ID NO: 96、SEQ ID NO: 121 至 SEQ ID NO: 132、SEQ ID NO: 145 至 SEQ ID NO: 150、SEQ ID NO: 234 至 237 以及 SEQ ID NO: 246 至 SEQ ID NO: 249),該隨從序列與引導序列之全部或部分互補。例如,隨從序列可以與除了引導序列之 10、9、8、7、6、5、4、3、2 或 1 個核苷酸之外的引導序列之全部核苷酸互補,或隨從序列可以與以下中之任一者互補:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233、及 SEQ ID NO: 242 至 SEQ ID NO: 245。在特定實例中,一個莖環結構可以包括 SEQ ID NO: 19 之引導序列及 SEQ ID NO: 34 之隨從序列,並且第二莖環結構可以包括 SEQ ID NO: 141 之引導序列及 SEQ ID NO: 147.此等四個序列之任何序列變體 (SEQ ID NO: 19、SEQ ID NO: 34、SEQ ID NO: 141 及 SEQ ID NO: 147) 可以包括在莖環結構中,該等序列變體與以下中之任一者具有至少 85% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 19、SEQ ID NO: 34、SEQ ID NO: 141 及 SEQ ID NO: 147。在一些實施例中,該一個或多個莖環結構可包括與以下中之任一者之核酸序列具有至少 85% (例如,至少 90%、95%、99% 或更多 (例如,100%)) 序列同一性的序列:SEQ ID NO: 4、SEQ ID NO: 135 及 SEQ ID NO: 258。Additionally, the one or more stem-loop structures may include a guide sequence (e.g., an antisense RNA sequence, such as any of the following: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245) and follower sequences (e.g., any of the following: SEQ ID NO: 31 to SEQ ID NO: 45, SEQ ID NO: 80 to SEQ ID NO: 96, SEQ ID NO: 121 to SEQ ID NO: 132 , SEQ ID NO: 145 to SEQ ID NO: 150, SEQ ID NO: 234 to 237, and SEQ ID NO: 246 to SEQ ID NO: 249), the follower sequence is complementary to all or part of the leader sequence. For example, the follower sequence may be complementary to all but 10, 9, 8, 7, 6, 5, 4, 3, 2, or 1 nucleotide of the leader sequence, or the follower sequence may be complementary to Any of the following are complementary: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233, and SEQ ID NO: 242 to SEQ ID NO: 245. In a specific example, one stem-loop structure may include the leader sequence of SEQ ID NO: 19 and the follower sequence of SEQ ID NO: 34, and a second stem-loop structure may include the leader sequence of SEQ ID NO: 141 and the follower sequence of SEQ ID NO: 147. Any sequence variants of these four sequences (SEQ ID NO: 19, SEQ ID NO: 34, SEQ ID NO: 141 and SEQ ID NO: 147) can be included in the stem-loop structure. These sequence variants Have at least 85% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or more (e.g., 100%)) sequence identity to any of the following: SEQ ID NO: 19. SEQ ID NO: 34, SEQ ID NO: 141 and SEQ ID NO: 147. In some embodiments, the one or more stem-loop structures may comprise a nucleic acid sequence that is at least 85% (e.g., at least 90%, 95%, 99%, or more (e.g., 100%) identical to any of )) Sequences with sequence identity: SEQ ID NO: 4, SEQ ID NO: 135 and SEQ ID NO: 258.
Pre-miRNA 或 pri-miRNA 支架包括本揭露之引導 (亦即,反義) 序列。pri-miRNA 支架包括 pre-miRNA 支架,且 pri-miRNA 之長度可為 50 至 800 個核苷酸 (例如,50 至 800、75 至 700、100 至 600、150 至 500、200 至 400、或 250 至 300 個核苷酸)。在特定實例中,pri-mRNA 可為 50 至 100 個核苷酸 (例如,介於 50 至 60、60 至 70、70 至 80、80 至 90、或 90 至 100 個核苷酸之間)、100 至 200 個核苷酸 (例如,介於 110 至 120、120 至 130、130 至 140、140 至 150、150 至 160、160 至 170、170 至 180、180 至 190、或 190 至 200 個核苷酸之間)、200 至 300 個核苷酸 (例如,介於 200 至 210、210 至 220、220 至 230、230 至 240、240 至 250、250 至 260、260 至 270、270 至 280、280 至 290、或 290 至 300 個核苷酸之間)、300 至 400 個核苷酸 (例如,介於 300 至 310、310 至 320、320 至 330、330 至 340、340 至 350、350 至 360、360 至 370、370 至 380、380 至 390、或 390 至 400 個核苷酸之間)、400 至 500 個核苷酸 (例如,介於 400 至 410、410 至 420、420 至 430、430 至 440、440 至 450、450 至 460、460 至 470、470 至 480、480 至 490、或 490 至 500 個核苷酸之間)、500 至 600 個核苷酸 (例如,藉由 500 至 510、510 至 520、520 至 530、530 至 540、540 至 550、550 至 560、560 至 570、570 至 580、580 至 590、或 590 至 600 個核苷酸之間)、600 至 700 個核苷酸 (例如,介於 600 至 610、610 至 620、620 至 630、630 至 640、640 至 650、650 至 660、660 至 670、670 至 680、680 至 690、或 690 至 700 個核苷酸之間)、或 700 至 800 個核苷酸 (例如,介於 700 至 710、710 至 720、720 至 730、730 至 740、740 至 750、750 至 760、760 至 770、770 至 780、780 至 790、或 790 至 800 個核苷酸之間)。此等經工程化之支架允許將 pre-miRNA 加工成包含引導股及隨從股的雙股 RNA。因此,pre-miRNA 包括:5' 臂,其包括編碼引導 (亦即,反義序列) RNA 的序列;環序列,其通常來自野生型 miRNA (例如,E-miR-30、E-miR-218-1 或 E-miR-124-3,等等);及 3' 臂,其包括編碼與引導股完全或基本上互補之隨從股 (亦即,正義序列) 的序列。Pre-miRNA「莖環」結構通常長於 50 個核苷酸,例如,長度為 50 至 150 個核苷酸 (例如,50 至 60、60 至 70、70 至 80、80 至 90、90 至 100、100 至 110、110 至 120、120 至 130、130 至 140 或 140 至 150 個核苷酸)、50 至 110 個核苷酸 (例如,50 至 60、60 至 70、70 至 80、80 至 90、90 至 100、100 至 110 個核苷酸),或 50 至 80 個核苷酸 (例如,50 至 60、60 至 70、70 至 80 個核苷酸)。Pri-miRNA 進一步包括分別位於 5' 及 3' 臂之側翼的 5' 側翼及 3' 側翼序列。側翼序列不一定與其他序列 (臂區域或引導序列) 連續,為未結構化、未配對的區域,且亦可全部或部分地衍生自一個或多個野生型 pri-miRNA 支架 (例如, pri-miRNA 支架全部或部分地衍生自 E-miR-30、E-miR-218-1 或 E-miR-124-3 等中之一者或多者)。側翼序列之長度各自至少為 4 個核苷酸,或長達 300 個核苷酸或更多 (例如,4 至 300、10 至 275、20 至 250、30 至 225、40 至 200、50 至 175、60 至 150、70 至 125、80 至 100 或 90 至 95 個核苷酸)。間隔子序列可以插入前述序列結構之間,並且在大多數情況下提供連接多核苷酸,例如,1 至 30 個核苷酸 (例如,1、2、3、4、5、6、7、8、9、10、11、12、13、14、15、16、17、18、19、20、21、22、23、24、25、26、27、28、29 或 30 個核苷酸),以向整個 pre-miRNA 結構提供撓性而不干擾功能。間隔子可以衍生自來自天然存在之 RNA 的天然存在之連接基團、天然存在之連接基團的一部分、多腺苷酸或多尿苷酸、或核苷酸之隨機序列,只要間隔子既不干擾與雙股 RNA 之加工也不干擾引導 RNA 與標靶 mRNA 序列的結合/交互作用。Pre-miRNA or pri-miRNA scaffolds include guide (i.e., antisense) sequences of the present disclosure. pri-miRNA scaffolds include pre-miRNA scaffolds, and pri-miRNA can be 50 to 800 nucleotides in length (e.g., 50 to 800, 75 to 700, 100 to 600, 150 to 500, 200 to 400, or 250 nucleotides). to 300 nucleotides). In specific examples, pri-mRNA can be 50 to 100 nucleotides (e.g., between 50 to 60, 60 to 70, 70 to 80, 80 to 90, or 90 to 100 nucleotides), 100 to 200 nucleotides (e.g., between 110 to 120, 120 to 130, 130 to 140, 140 to 150, 150 to 160, 160 to 170, 170 to 180, 180 to 190, or 190 to 200 nucleotides between nucleotides), 200 to 300 nucleotides (for example, between 200 to 210, 210 to 220, 220 to 230, 230 to 240, 240 to 250, 250 to 260, 260 to 270, 270 to 280, 280 to 290, or 290 to 300 nucleotides), 300 to 400 nucleotides (e.g., between 300 to 310, 310 to 320, 320 to 330, 330 to 340, 340 to 350, 350 to 360, 360 to 370, 370 to 380, 380 to 390, or 390 to 400 nucleotides), 400 to 500 nucleotides (e.g., between 400 to 410, 410 to 420, 420 to 430, 430 to 440, 440 to 450, 450 to 460, 460 to 470, 470 to 480, 480 to 490, or 490 to 500 nucleotides), 500 to 600 nucleotides (e.g., by 500 to 510, 510 to 520, 520 to 530, 530 to 540, 540 to 550, 550 to 560, 560 to 570, 570 to 580, 580 to 590, or 590 to 600 nucleotides), 600 to 700 Nucleotides (e.g., between 600 to 610, 610 to 620, 620 to 630, 630 to 640, 640 to 650, 650 to 660, 660 to 670, 670 to 680, 680 to 690, or 690 to 700 nucleotides between nucleotides), or 700 to 800 nucleotides (e.g., between 700 to 710, 710 to 720, 720 to 730, 730 to 740, 740 to 750, 750 to 760, 760 to 770, 770 to 780 , 780 to 790, or 790 to 800 nucleotides). These engineered scaffolds allow processing of pre-miRNA into double-stranded RNA containing leader and follower strands. Thus, pre-miRNA includes: the 5' arm, which includes the sequence encoding the guide (i.e., antisense sequence) RNA; the loop sequence, which is typically derived from wild-type miRNA (e.g., E-miR-30, E-miR-218 -1 or E-miR-124-3, etc.); and the 3' arm, which includes a sequence encoding a follower strand that is completely or substantially complementary to the leader strand (ie, the sense sequence). Pre-miRNA "stem-loop" structures are typically longer than 50 nucleotides, for example, 50 to 150 nucleotides in length (e.g., 50 to 60, 60 to 70, 70 to 80, 80 to 90, 90 to 100, 100 to 110, 110 to 120, 120 to 130, 130 to 140, or 140 to 150 nucleotides), 50 to 110 nucleotides (e.g., 50 to 60, 60 to 70, 70 to 80, 80 to 90 , 90 to 100, 100 to 110 nucleotides), or 50 to 80 nucleotides (e.g., 50 to 60, 60 to 70, 70 to 80 nucleotides). Pri-miRNA further includes 5' flanking and 3' flanking sequences flanking the 5' and 3' arms respectively. The flanking sequences are not necessarily contiguous with other sequences (arm regions or guide sequences), are unstructured, unpaired regions, and can also be derived in whole or in part from one or more wild-type pri-miRNA scaffolds (e.g., pri-miRNA The miRNA scaffold is derived in whole or in part from one or more of E-miR-30, E-miR-218-1 or E-miR-124-3, etc.). The flanking sequences are each at least 4 nucleotides in length, or up to 300 nucleotides or more (e.g., 4 to 300, 10 to 275, 20 to 250, 30 to 225, 40 to 200, 50 to 175 , 60 to 150, 70 to 125, 80 to 100 or 90 to 95 nucleotides). Spacer sequences can be inserted between the preceding sequence structures and in most cases provide linking polynucleotides, e.g., 1 to 30 nucleotides (e.g., 1, 2, 3, 4, 5, 6, 7, 8 , 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29 or 30 nucleotides), to provide flexibility to the entire pre-miRNA structure without interfering with function. The spacer may be derived from a naturally occurring linking group from naturally occurring RNA, a portion of a naturally occurring linking group, a polyadenylate or polyuridylate, or a random sequence of nucleotides, so long as the spacer is neither Interference with double-stranded RNA processing does not interfere with the binding/interaction of the guide RNA with the target mRNA sequence.
根據本文揭示的方法及組成物,包括核苷酸序列的表現載體或多核苷酸可進一步編碼 (i) 5' 莖環臂,其包括引導 (例如,反義) 股及視情況選用的 5' 間隔子序列 ;及 (ii) 3' 莖環臂,其包括隨從 (例如,正義) 股及視情況選用的 3' 間隔子序列。在另一實例中,包括核苷酸序列的表現載體或多核苷酸可進一步編碼 (i) 5' 莖環臂,其包括隨從股及視情況選用的 5' 間隔子序列 ;及 (ii) 3' 莖環臂,其包括引導股及視情況選用的 3' 間隔子序列。在另一實例中,尿苷搖擺鹼基存在於引導股之 5' 端。在又一實例中,表現載體或多核苷酸包括位於引導序列上游的前導 5' 側翼區域,並且該側翼區域可為任何長度並且可以全部或部分地衍生自野生型微小 RNA 序列,可為異源的或衍生自與其他側翼區域或環不同來源的 miRNA,或者可為完全人工的。3' 側翼區域的大小及起源可為 5' 側翼區域之鏡像,且 3' 側翼區域可位於引導序列的下游 (亦即 3')。在再一實例中,5' 側翼序列及 3' 側翼序列中之一者或兩者不存在。According to the methods and compositions disclosed herein, an expression vector or polynucleotide including a nucleotide sequence may further encode (i) a 5' stem-loop arm, which includes a guide (e.g., antisense) strand and optionally a 5' a spacer sequence; and (ii) a 3' stem-loop arm, which includes a follower (eg, sense) strand and optionally a 3' spacer sequence. In another example, an expression vector or polynucleotide comprising a nucleotide sequence may further encode (i) a 5' stem-loop arm including a follower strand and optionally a 5' spacer sequence; and (ii) 3 'Stem-loop arm, which includes the guide strand and optionally the 3' spacer sequence. In another example, a uridine wobble base is present at the 5' end of the leading strand. In yet another example, the expression vector or polynucleotide includes a leader 5' flanking region located upstream of the leader sequence, and the flanking region can be of any length and can be derived in whole or in part from a wild-type microRNA sequence, which can be heterologous. or may be derived from a different source than the other flanking regions or loops of the miRNA, or may be completely artificial. The size and origin of the 3' flanking region can be a mirror image of the 5' flanking region, and the 3' flanking region can be located downstream (i.e., 3') of the leader sequence. In yet another example, one or both of the 5' flanking sequence and the 3' flanking sequence are absent.
表現載體或多核苷酸可包括進一步編碼第一側翼區域 (例如,表 8 中所述的 5' 側翼區域中之任一者) 的核苷酸序列,該第一側翼區域包括 5' 側翼序列及視情況選用的 5' 間隔子序列。在特定實例中,第一側翼區域位於該隨從股的上游 (亦即,5')。在另一實例中,包括核苷酸序列的表現載體或多核苷酸編碼第二側翼區域 (例如,表 8 中所述的 3' 側翼區域中之任一者),該第二側翼區域包括 3' 側翼序列及視情況選用的 3' 間隔子序列。在特定實例中,第一側翼區域位於引導股之 5'。The expression vector or polynucleotide may include a nucleotide sequence further encoding a first flanking region (e.g., any of the 5' flanking regions described in Table 8) that includes the 5' flanking sequence and Optional 5' spacer sequence. In certain instances, the first flanking region is located upstream (ie, 5') of the follower strand. In another example, an expression vector or polynucleotide comprising a nucleotide sequence encodes a second flanking region (e.g., any of the 3' flanking regions described in Table 8), the second flanking region comprising 3 'Flanking sequences and optional 3' spacer sequences. In a specific example, the first flanking region is located 5' from the leading strand.
根據本文所揭示的方法及組成物,表現載體或多核苷酸可包括與以下中之任一者具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 同一性的核酸序列:SEQ ID NO: 1 至 SEQ ID NO: 34、SEQ ID NO: 135 至 SEQ ID NO: 147、SEQ ID NO: 226 至 229 或 SEQ ID NO: 256。在特定實例中,表現載體或多核苷酸可包括與 SEQ ID NO: 256 具有至少 85% 同一性的核酸序列。在一些實施例中,表現載體或多核苷酸可包括以下之核酸序列:SEQ ID NO: 256.在另一特定實例中,表現載體或多核苷酸可包括與以下中之一者或多者具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 同一性的核酸序列:SEQ ID NO: 1 至 SEQ ID NO: 34 及 SEQ ID NO: 135 至 SEQ ID NO: 147。在另一實例中,表現載體或多核苷酸可包括與以下中之任一者具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 同一性的核酸序列:SEQ ID NO: 46-62。在另一實例中,表現載體或多核苷酸可包括與以下中之任一者具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 同一性的核酸序列:SEQ ID NO: 97-108。在再一實例中,表現載體或多核苷酸可包括與以下中之任一者具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 同一性的核酸序列:SEQ ID NO: 133-138。According to the methods and compositions disclosed herein, an expression vector or polynucleotide may comprise at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%) of any of the following: , 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identity of the nucleic acid sequence: SEQ ID NO: 1 to SEQ ID NO: 34. SEQ ID NO: 135 to SEQ ID NO: 147, SEQ ID NO: 226 to 229 or SEQ ID NO: 256. In specific examples, the expression vector or polynucleotide can include a nucleic acid sequence that is at least 85% identical to SEQ ID NO: 256. In some embodiments, the expression vector or polynucleotide may comprise the following nucleic acid sequence: SEQ ID NO: 256. In another specific example, the expression vector or polynucleotide may comprise a sequence having the following properties: At least 85% (for example, at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more Nucleic acid sequences with multiple (eg, 100%) identity: SEQ ID NO: 1 to SEQ ID NO: 34 and SEQ ID NO: 135 to SEQ ID NO: 147. In another example, the expression vector or polynucleotide can comprise at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, Nucleic acid sequences that are 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identical: SEQ ID NO: 46-62. In another example, the expression vector or polynucleotide can comprise at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, Nucleic acid sequences with 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identity: SEQ ID NO: 97-108. In yet another example, the expression vector or polynucleotide can comprise at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, Nucleic acid sequences with 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identity: SEQ ID NO: 133-138.
在另一實例中,表現載體或多核苷酸包括編碼以下的核苷酸序列: (a) 莖環序列,其包括,從 5' 到 3': (i) 5' 莖環臂,其包括與引導核苷酸序列互補或基本互補的隨從核苷酸序列 (諸如具有與以下中之任一者具有至少 85% (例如,至少 86%,87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 同一性的核酸序列的隨從序列:SEQ ID NO: 31 至 SEQ ID NO: 45、SEQ ID NO: 80 至 SEQ ID NO: 96、SEQ ID NO: 121 至 SEQ ID NO: 132、SEQ ID NO: 145 至 SEQ ID NO: 150、SEQ ID NO: 234 至 237 以及 SEQ ID NO: 246 至 249); (ii) 微小 RNA 環區域,其中該環區域包括微小 RNA 環序列 (例如,E-miR-30a、miR-218-1 或 E-miR-124-3 環序列 (例如,具有選自以下中之任一者之核酸的微小 RNA 序列:SEQ ID NO: 4 至 SEQ ID NO: 225); (iii) 3' 莖環臂,其包括引導核苷酸序列 (諸如具有與以下中之任一者具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 同一性的核酸序列的引導序列:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 233 以及 SEQ ID NO: 242 至 245); (b) 位於隨從股 5' 的 5' 側翼區域 (例如,表 13 中所述的 5' 側翼區域中之任一者);及 (c) 位於引導股 3' 的 3' 側翼區域 (例如,表 13 中所述的 3' 側翼區域中之任一者),其中第二側翼區域包括 3' 側翼序列及視情況選用的 3' 間隔子序列。在一些實施例中,表現載體或多核苷酸包括編碼以下的核酸序列:(a) 莖環序列,其包括,從 5' 到 3': (i) 5' 莖環臂,其包括與引導核苷酸序列互補或基本互補的隨從核苷酸序列 (諸如具有與以下中之任一者具有至少 85% (例如,至少 86%,87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 同一性的核酸序列的隨從序列:SEQ ID NO: 34 及 SEQ ID NO: 147);(ii) 微小 RNA 環區域,其中該環區域包括微小 RNA 環序列 (例如,E-miR-30a 或 miR-218-1 環序列 (例如,具有選自以下中之任一者之核酸的微小 RNA 序列:SEQ ID NO: 4 或 SEQ ID NO: 135);(iii) 3' 莖環臂,其包括引導核苷酸序列 (諸如具有與以下中之任一者具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的核酸序列的引導序列:SEQ ID NO: 19 及 SEQ ID NO: 141)。 (b) 位於隨從股 5' 的 5' 側翼區域 (例如,表 13 中所述的 5' 側翼區域中之任一者);及 (c) 位於引導股 3' 的 3' 側翼區域 (例如,表 13 中所述的 3' 側翼區域中之任一者),其中第二側翼區域包括 3' 側翼序列及視情況選用的 3' 間隔子序列。在一些實施例中,表現載體或多核苷酸包括核酸序列,該核酸序列包括兩個莖環序列,其中 (a) 一個莖環序列含有以下之引導序列:SEQ ID NO: 19 或其變體,該變體與 SEQ ID NO: 19 具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;以下之微小 RNA 環區域:SEQ ID NO: 4 或其變體,該變體與 SEQ ID NO: 4 具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;及以下之隨從序列:SEQ ID NO: 34 或其變體,該變體與 SEQ ID NO: 34 具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;並且 (b) 第二莖環序列含有以下之引導序列:SEQ ID NO: 141 或其變體,該變體與 SEQ ID NO: 141 具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;以下之微小 RNA 環區域:SEQ ID NO: 135 或其變體,該變體與 SEQ ID NO: 135 具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;及以下之隨從序列:SEQ ID NO: 147 或其變體,該變體與 SEQ ID NO: 135 具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性;147.在較佳之實施例中,表現載體或多核苷酸包括核酸序列,該核酸序列包括包含兩個莖環序列,其中 (a) 一個莖環序列含有 SEQ ID NO: 19 之引導序列、SEQ ID NO: 4 之微小 RNA 環區域、及 SEQ ID NO: 34 之隨從序列,並且 (b) 第二莖環序列包含 SEQ ID NO: 141 之引導序列、SEQ ID NO: 135 之微小 RNA 環區域、及 SEQ ID NO: 147.在一些實施例中,表現載體或多核苷酸包括與 SEQ ID NO: 256 具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的核苷酸序列。在一些實施例中,表現載體或多核苷酸具有 SEQ ID NO: 256 之核苷酸序列。 In another example, the expression vector or polynucleotide includes a nucleotide sequence encoding: (a) Stem-loop sequence, which includes, from 5' to 3': (i) A 5' stem-loop arm that includes a follower nucleotide sequence that is complementary or substantially complementary to the leader nucleotide sequence (such as having a sequence that is at least 85% (e.g., at least 86%, 87%) identical to any of the following) , 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identity of the nucleic acid Sequences following the sequence: SEQ ID NO: 31 to SEQ ID NO: 45, SEQ ID NO: 80 to SEQ ID NO: 96, SEQ ID NO: 121 to SEQ ID NO: 132, SEQ ID NO: 145 to SEQ ID NO : 150, SEQ ID NO: 234 to 237 and SEQ ID NO: 246 to 249); (ii) A microRNA loop region, wherein the loop region includes a microRNA loop sequence (e.g., E-miR-30a, miR-218-1 or E-miR-124-3 loop sequence (e.g., having a sequence selected from MicroRNA sequence of any one of the nucleic acids: SEQ ID NO: 4 to SEQ ID NO: 225); (iii) a 3' stem-loop arm that includes a guide nucleotide sequence (such as having a sequence that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%) identical to any of the following) %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identity of the nucleic acid sequence: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to 233 and SEQ ID NO: 242 to 245); (b) The 5' flanking region located 5' of the follower strand (e.g., any of the 5' flanking regions described in Table 13); and (c) A 3' flanking region located 3' of the guide strand (e.g., any of the 3' flanking regions described in Table 13), where the second flanking region includes the 3' flanking sequence and optionally the 3' flanking region spacer sequence. In some embodiments, the expression vector or polynucleotide includes a nucleic acid sequence encoding: (a) a stem-loop sequence including, from 5' to 3': (i) A 5' stem-loop arm that includes a follower nucleotide sequence that is complementary or substantially complementary to the leader nucleotide sequence (such as having a sequence that is at least 85% (e.g., at least 86%, 87%) identical to any of the following) , 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) identity of the nucleic acid Sequences following the sequence: SEQ ID NO: 34 and SEQ ID NO: 147); (ii) a microRNA loop region, wherein the loop region includes a microRNA loop sequence (e.g., E-miR-30a or miR-218-1 loop Sequence (e.g., a microRNA sequence having a nucleic acid selected from any of: SEQ ID NO: 4 or SEQ ID NO: 135); (iii) a 3' stem-loop arm including a guide nucleotide sequence ( Such as having at least 85% of any of the following (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, A primer sequence for a nucleic acid sequence with 97%, 98%, 99% or more (eg, 100%) sequence identity: SEQ ID NO: 19 and SEQ ID NO: 141). (b) The 5' flanking region located 5' of the follower strand (e.g., any of the 5' flanking regions described in Table 13); and (c) A 3' flanking region located 3' of the guide strand (e.g., any of the 3' flanking regions described in Table 13), where the second flanking region includes the 3' flanking sequence and optionally the 3' flanking region spacer sequence. In some embodiments, the expression vector or polynucleotide includes a nucleic acid sequence that includes two stem-loop sequences, wherein (a) one stem-loop sequence contains the following leader sequence: SEQ ID NO: 19 or a variant thereof, The variant is at least 85% identical to SEQ ID NO: 19 (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; microRNA loop region: SEQ ID NO: 4 or a variant thereof that has at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; and the following sequence: SEQ ID NO: 34 or a variant thereof that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; and (b) The second stem-loop sequence contains the following leader sequence: SEQ ID NO: 141 or a variant thereof that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; microRNA Loop region: SEQ ID NO: 135 or a variant thereof that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%) identical to SEQ ID NO: 135 , 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity; and the following sequence: SEQ ID NO: 147 or a variant thereof , the variant is at least 85% identical to SEQ ID NO: 135 (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96% , 97%, 98%, 99% or more (e.g., 100%)) sequence identity; 147. In a preferred embodiment, the expression vector or polynucleotide includes a nucleic acid sequence comprising two stems Loop sequence, wherein (a) one stem-loop sequence contains the leader sequence of SEQ ID NO: 19, the microRNA loop region of SEQ ID NO: 4, and the follower sequence of SEQ ID NO: 34, and (b) the second stem-loop sequence The sequence includes the leader sequence of SEQ ID NO: 141, the microRNA loop region of SEQ ID NO: 135, and SEQ ID NO: 147. In some embodiments, the expression vector or polynucleotide includes at least SEQ ID NO: 256. 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity of the nucleotide sequence. In some embodiments, the expression vector or polynucleotide has the nucleotide sequence of SEQ ID NO: 256.
在另一實例中,表現載體或多核苷酸包括編碼以下的核苷酸序列: (a) 莖環序列,其包括,從 5' 到 3': (i) 5' 莖環臂,其包括引導核苷酸序列 (諸如具有與以下中之任一者具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的核酸序列的引導序列:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 233 以及 SEQ ID NO: 242 至 245); (ii) 微小 RNA 環區域,其中該環區域包括微小 RNA 環序列 (例如,E-miR-30a、miR-218-1 或 E-miR-124-3 環序列 (例如,具有選自以下中之任一者之核酸的微小 RNA 序列:SEQ ID NO: 219、SEQ ID NO: 222 或 SEQ ID NO: 225); (iii) 3' 莖環臂,其包括與引導核苷酸序列互補或基本互補的隨從核苷酸序列 (諸如具有與以下中之任一者具有至少 85% (例如,至少 86%,87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性的核酸序列的隨從序列:SEQ ID NO: 31 至 SEQ ID NO: 45、SEQ ID NO: 80 至 SEQ ID NO: 96、SEQ ID NO: 121 至 SEQ ID NO: 132、SEQ ID NO: 145 至 SEQ ID NO: 150、SEQ ID NO: 234 至 237 以及 SEQ ID NO: 246 至 249); (b) 位於引導股 5' 的 5' 側翼區域 (例如,表 13 中所述的 5' 側翼區域中之任一者);及 (c) 位於隨從股 3' 的 3' 側翼區域 (例如,表 13 中所述的 3' 側翼區域中之任一者),其中第二側翼區域包括 3' 側翼序列及視情況選用的 3' 間隔子序列。 In another example, the expression vector or polynucleotide includes a nucleotide sequence encoding: (a) Stem-loop sequence, which includes, from 5' to 3': (i) A 5' stem-loop arm that includes a guide nucleotide sequence (such as having a sequence that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%) identical to any of the following) %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity to a nucleic acid sequence leader sequence: SEQ ID NO: 16 To SEQ ID NO: 30, SEQ ID NO: 63 To SEQ ID NO: 79, SEQ ID NO: 109 To SEQ ID NO: 120, SEQ ID NO: 139 To SEQ ID NO: 144, SEQ ID NO: 230 to 233 and SEQ ID NO: 242 to 245); (ii) A microRNA loop region, wherein the loop region includes a microRNA loop sequence (e.g., E-miR-30a, miR-218-1 or E-miR-124-3 loop sequence (e.g., having a sequence selected from The microRNA sequence of any of the nucleic acids: SEQ ID NO: 219, SEQ ID NO: 222 or SEQ ID NO: 225); (iii) a 3' stem-loop arm that includes a follower nucleotide sequence that is complementary or substantially complementary to the leader nucleotide sequence (such as having a sequence that is at least 85% (e.g., at least 86%, 87%) identical to any of the following) , 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) sequence identity Follower sequences of nucleic acid sequences: SEQ ID NO: 31 to SEQ ID NO: 45, SEQ ID NO: 80 to SEQ ID NO: 96, SEQ ID NO: 121 to SEQ ID NO: 132, SEQ ID NO: 145 to SEQ ID NO: 150, SEQ ID NO: 234 to 237 and SEQ ID NO: 246 to 249); (b) The 5' flanking region located at 5' of the guide strand (e.g., any of the 5' flanking regions described in Table 13); and (c) A 3' flanking region located at 3' of the follower strand (e.g., any of the 3' flanking regions described in Table 13), wherein the second flanking region includes the 3' flanking sequence and optionally the 3' flanking region spacer sequence.
前述引導股及隨從股之長度可為 19 至 50 (例如,19、20、21、22、23、24、25、26 至 30、31 至 35、36 至 40、41 至 45 或 46 至 50) 個核苷酸之間的長度。在特定實例中,引導股之長度為 19 個核苷酸。在另一實例中,引導股之長度為 20 個核苷酸。在另一實例中,引導股之長度為 21 個核苷酸。在另一實例中,引導股之長度為 22 個核苷酸。在另一實例中,引導股之長度為 23 個核苷酸。在另一實例中,引導股之長度為 24 個核苷酸。在另一實例中,引導股之長度為 25 個核苷酸。在另一實例中,引導股之長度為 26 至 30 個核苷酸。在另一實例中,引導股之長度為 31 至 35 個核苷酸。在另一實例中,引導股之長度為 36 至 40 個核苷酸。在另一實例中,引導股之長度為 41 至 45 個核苷酸。在另一實例中,引導股之長度為 46 至 50 個核苷酸。在特定實例中,隨從股之長度為 19 個核苷酸。在另一實例中,隨從股之長度為 20 個核苷酸。在另一實例中,隨從股之長度為 21 個核苷酸。在另一實例中,隨從股之長度為 22 個核苷酸。在另一實例中,隨從股之長度為 23 個核苷酸。在另一實例中,隨從股之長度為 24 個核苷酸。在另一實例中,隨從股之長度為 25 個核苷酸。在另一實例中,隨從股之長度為 26 至 30 個核苷酸。在另一實例中,隨從股之長度為 31 至 35 個核苷酸。在另一實例中,隨從股之長度為 36 至 40 個核苷酸。在另一實例中,隨從股之長度為 41 至 45 個核苷酸。在另一實例中,隨從股之長度為 46 至 50 個核苷酸。The length of the aforementioned leading and following strands may be 19 to 50 (for example, 19, 20, 21, 22, 23, 24, 25, 26 to 30, 31 to 35, 36 to 40, 41 to 45 or 46 to 50) length between nucleotides. In a specific example, the guide strand is 19 nucleotides in length. In another example, the guide strand is 20 nucleotides in length. In another example, the guide strand is 21 nucleotides in length. In another example, the guide strand is 22 nucleotides in length. In another example, the guide strand is 23 nucleotides in length. In another example, the guide strand is 24 nucleotides in length. In another example, the guide strand is 25 nucleotides in length. In another example, the guide strand is 26 to 30 nucleotides in length. In another example, the guide strand is 31 to 35 nucleotides in length. In another example, the guide strand is 36 to 40 nucleotides in length. In another example, the guide strand is 41 to 45 nucleotides in length. In another example, the guide strand is 46 to 50 nucleotides in length. In a specific example, the follower strand is 19 nucleotides in length. In another example, the follower strand is 20 nucleotides in length. In another example, the follower strand is 21 nucleotides in length. In another example, the follower strand is 22 nucleotides in length. In another example, the follower strand is 23 nucleotides in length. In another example, the follower strand is 24 nucleotides in length. In another example, the follower strand is 25 nucleotides in length. In another example, the follower strand is 26 to 30 nucleotides in length. In another example, the follower strand is 31 to 35 nucleotides in length. In another example, the follower strand is 36 to 40 nucleotides in length. In another example, the follower strand is 41 to 45 nucleotides in length. In another example, the follower strand is 46 to 50 nucleotides in length.
引導及隨從序列之長度可介於將該引導及隨從股併入其內的 miRNA 支架而有所不同。當給定之引導適應於 miRNA 支架內時,可以延長引導之長度以適應給定 miRNA 支架的自然結構及加工。例如,由 E-miR-30 支架產生的引導序列通常為 22 個核苷酸長。對於大多數支架,引導序列在 3' 端延伸,以額外地與標靶 mRNA 序列互補,但在以下情況下可能涉及修改引導之 5' 起始位點,取決於 miRNA 支架之序列。The length of the leader and follower sequences can vary between the miRNA scaffolds into which the leader and follower strands are incorporated. When a given guide is adapted within a miRNA scaffold, the length of the guide can be extended to accommodate the natural structure and processing of a given miRNA scaffold. For example, guide sequences generated from E-miR-30 scaffolds are typically 22 nucleotides long. For most scaffolds, the leader sequence is extended at the 3' end to be additionally complementary to the target mRNA sequence, but this may involve modification of the 5' start site of the leader, depending on the sequence of the miRNA scaffold.
在某些情況下,可能需要修改 miRNA 引導及隨從股表現水平及/或加工模式,以增強或修改給定構建體的靶向能力。因此,在給定的 miRNA 框架/支架內,引導股及隨從股之位置可互換;這可能是在設計包括填充序列 (例如,SEQ ID NO: 250 或 SEQ ID NO: 251) 的情境中,或者可能在設計沒有填充物的情境中。這可能額外地在雙重構建體或多聯構建體的情境中。為了適應這種改變,可以從模板「親代」設計修改引導股及/或隨從股之序列。替代地,可以對引導股及/或隨從股序列進行修飾,以便影響引導股及隨從股表現及/或加工模式的改變。In some cases, it may be necessary to modify the levels of expression and/or processing patterns of the miRNA guide and follower strands to enhance or modify the targeting ability of a given construct. Therefore, within a given miRNA framework/scaffold, the positions of the leader and follower strands are interchangeable; this may be in the context of a design that includes a filler sequence (e.g., SEQ ID NO: 250 or SEQ ID NO: 251), or Possibly in situations where the design has no filler. This may additionally be in the context of double constructs or polyplexes. To accommodate this change, the sequence of leading and/or following strands can be modified from the template "parent" design. Alternatively, the lead and/or follower sequences may be modified to effect changes in lead and follower performance and/or processing patterns.
在特定實例中,載體或多核苷酸包括 E-miR-30a 序列,其中 5' 側翼區域包括核苷酸序列,該核苷酸序列與 SEQ ID NO: 217 至少 90% (例如,至少 90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 相同 (參見表 13)。In a specific example, the vector or polynucleotide includes an E-miR-30a sequence, wherein the 5' flanking region includes a nucleotide sequence that is at least 90% identical to SEQ ID NO: 217 (e.g., at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) the same (see Table 13).
在以下實施例中,載體或多核苷酸包括 E-miR-30a 序列,其中 3' 側翼區域包括核苷酸序列,該核苷酸序列與 SEQ ID NO: 218 至少 90% (例如,至少 90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 相同 (參見表 13)。In the following examples, the vector or polynucleotide includes an E-miR-30a sequence, wherein the 3' flanking region includes a nucleotide sequence that is at least 90% (e.g., at least 90%) identical to SEQ ID NO: 218 , 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) the same (see Table 13).
在另一個實例中,載體或多核苷酸包括 E-miR-30a 結構,其中環區域包括 SEQ ID NO: 219 之核苷酸序列,或與 SEQ ID NO: 219 至少 90% (例如,至少 90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100 %)) 相同 (參見表 13)。In another example, the vector or polynucleotide includes an E-miR-30a structure, wherein the loop region includes the nucleotide sequence of SEQ ID NO: 219, or is at least 90% (e.g., at least 90%) identical to SEQ ID NO: 219 , 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) the same (see Table 13).
在特定實例中,載體或多核苷酸包括 miR-218-1 序列,其中 5' 側翼區域包括核苷酸序列,該核苷酸序列與 SEQ ID NO: 220 至少 90% (例如,至少 90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 相同 (參見表 13)。In a specific example, the vector or polynucleotide includes a miR-218-1 sequence, wherein the 5' flanking region includes a nucleotide sequence that is at least 90% identical to SEQ ID NO: 220 (e.g., at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) the same (see Table 13).
在以下實施例中,載體或多核苷酸包括 miR-218-1 序列,其中 3' 側翼區域包括核苷酸序列,該核苷酸序列與 SEQ ID NO: 221 至少 90% (例如,至少 90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 相同 (參見表 13)。In the following examples, the vector or polynucleotide includes a miR-218-1 sequence, wherein the 3' flanking region includes a nucleotide sequence that is at least 90% (e.g., at least 90%) identical to SEQ ID NO: 221 , 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) the same (see Table 13).
在另一個實例中,載體或多核苷酸包括 miR-218-1 結構,其中環區域包括 SEQ ID NO: 222 之核苷酸序列,或與 SEQ ID NO: 219 至少 90% (例如,至少 90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100 %)) 相同 (參見表 13)。In another example, the vector or polynucleotide includes a miR-218-1 structure, wherein the loop region includes the nucleotide sequence of SEQ ID NO: 222, or is at least 90% (e.g., at least 90%) identical to SEQ ID NO: 219 , 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) the same (see Table 13).
在特定實例中,載體或多核苷酸包括 E-miR-124-3 序列,其中 5' 側翼區域包括核苷酸序列,該核苷酸序列與 SEQ ID NO: 223 至少 90% (例如,至少 90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 相同 (參見表 13)。In a specific example, the vector or polynucleotide includes an E-miR-124-3 sequence, wherein the 5' flanking region includes a nucleotide sequence that is at least 90% (e.g., at least 90%) identical to SEQ ID NO: 223 %, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) the same (see Table 13).
在以下實施例中,載體或多核苷酸包括 E-miR-124-3 序列,其中 3' 側翼區域包括核苷酸序列,該核苷酸序列與 SEQ ID NO: 224 至少 90% (例如,至少 90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 相同 (參見表 13)。In the following examples, the vector or polynucleotide includes an E-miR-124-3 sequence, wherein the 3' flanking region includes a nucleotide sequence that is at least 90% identical to SEQ ID NO: 224 (e.g., at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) the same (see Table 13).
在另一個實例中,載體或多核苷酸包括 E-miR-124-3 結構,其中環區域包括 SEQ ID NO: 225 之核苷酸序列,或與 SEQ ID NO: 225 至少 90% (例如,至少 90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100 %)) 相同 (參見表 13)。In another example, the vector or polynucleotide includes an E-miR-124-3 structure, wherein the loop region includes the nucleotide sequence of SEQ ID NO: 225, or is at least 90% identical to SEQ ID NO: 225 (e.g., at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) the same (see Table 13).
表現載體可為質體並且可包括例如以下中之一者或多者:內含子序列 (例如,以下之內含子序列:SEQ ID NO: 205 或 SEQ ID NO: 206 或其變體,該變體與以下之核酸序列具有至少 85% (例如,至少 85%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 205 或 SEQ ID NO: 206)、連接子序列或填充序列 (例如,SEQ ID NO: 250 或 SEQ ID NO: 251) 中重建。
表 13. 微小 RNA 序列
據此,本揭露之一個目的涉及包括多核苷酸的載體,該多核苷酸具有以下中之任一者的核酸序列:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 208 至 229、SEQ ID NO: 238 至 241、SEQ ID NO: 250 至 251 以及 SEQ ID NO: 256 至 261 或其變體,該變體與以下中之任一者的核酸序列具有至少 85% (至少 85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 208 至 229、SEQ ID NO: 238 至 241、SEQ ID NO: 250 至 251 以及 SEQ ID NO: 256 至 261。例如,載體可包括多核苷酸,該多核苷酸與以下中之任一者的核酸序列具有至少 90% (例如,至少 90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 208 至 229、SEQ ID NO: 238 至 241、SEQ ID NO: 250 至 251 以及 SEQ ID NO: 256 至 261。在另一實例中,載體可包括多核苷酸,該多核苷酸與以下中之任一者的核酸序列具有至少 95% (例如,至少 95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 208 至 229、SEQ ID NO: 238 至 241、SEQ ID NO: 250 至 251 以及 SEQ ID NO: 256 至 261。本揭露之載體可進一步包括多核苷酸,該多核苷酸具有以下中之任一者的核酸序列:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 208 至 229、SEQ ID NO: 238 至 241、SEQ ID NO: 250 至 251 以及 SEQ ID NO: 256 至 261。Accordingly, one object of the present disclosure relates to a vector comprising a polynucleotide having a nucleic acid sequence of any of the following: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 208 to 229, SEQ ID NO: 238 to 241, SEQ ID NO: 250 to 251 and SEQ ID NO: 256 to 261 or a variant thereof that shares at least 85% (at least 85%, 86%, 87%, 88%, 89%, 90%) the nucleic acid sequence of any of the following %, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 208 to 229, SEQ ID NO: 238 to 241, SEQ ID NO: 250 to 251, and SEQ ID NO: 256 to 261. For example, a vector can include a polynucleotide that is at least 90% (e.g., at least 90%, 95%, 96%, 97%, 98%, 99%, or more) identical to any of the following nucleic acid sequences: Multiple (e.g., 100%)) sequence identity: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 208 to 229, SEQ ID NO: 238 to 241, SEQ ID NO: 250 to 251 and SEQ ID NO: 256 to 261. In another example, a vector can include a polynucleotide that shares at least 95% (e.g., at least 95%, 96%, 97%, 98%, 99%, or More (e.g., 100%)) Sequence identity: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 208 to 229, SEQ ID NO: 238 to 241, SEQ ID NO: 250 to 251 and SEQ ID NO: 256 to 261. The vector of the present disclosure may further comprise a polynucleotide having a nucleic acid sequence of any of the following: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 208 to 229, SEQ ID NO: 238 to 241, SEQ ID NO: 250 to 251 and SEQ ID NO: 256 to 261.
特定而言,該載體可包括:以下中之任一者的序列:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 208 至 229、SEQ ID NO: 238 至 241、SEQ ID NO: 250 至 251 以及 SEQ ID NO: 256 至 261 或其變體,該變體與以下中之任一者的核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 208 至 229、SEQ ID NO: 238 至 241、SEQ ID NO: 250 至 251 以及 SEQ ID NO: 256 至 261;以及啟動子 (例如,表 11 中所列的啟動子中之任一者)。Specifically, the vector may include: the sequence of any one of: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 208 to 229, SEQ ID NO: 238 to 241, SEQ ID NO: 250 to 251 and SEQ ID NO: 256 to 261 or variations thereof A variant that shares at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62. SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 208 to 229, SEQ ID NO: 238 to 241, SEQ ID NO: 250 to 251 and SEQ ID NOs: 256 to 261; and a promoter (eg, any of the promoters listed in Table 11).
上面討論的變體可以包括,例如,由於個體之間的等位基因變異 (例如,多形性)、替代剪接形式等而自然存在之變體。術語變體亦包括來自其他來源或生物體的本揭露之基因序列。變體可以與根據本揭露的序列基本上同源。本揭露之基因的變體亦包括核酸序列,該核酸序列在嚴格雜交條件下與如上定義的序列 (或其互補股) 雜交。典型的嚴格雜交條件包括溫度高於 30℃、高於 35℃ 或超過 42℃,及/或鹽度低於約 500 mM 或低於 200 mM。雜交條件可以藉由例如改變溫度、鹽度及/或其他試劑諸如 SDS、SSC 等之濃度來調整。Variants discussed above may include, for example, naturally occurring variants due to allelic variation between individuals (e.g., polymorphisms), alternative splicing forms, etc. The term variant also includes genetic sequences of the present disclosure from other sources or organisms. Variants can be substantially homologous to sequences according to the present disclosure. Variants of the genes of the present disclosure also include nucleic acid sequences that hybridize under stringent hybridization conditions to the sequence defined above (or its complement). Typical stringent hybridization conditions include temperatures above 30°C, above 35°C, or above 42°C, and/or salinities below approximately 500 mM or below 200 mM. Hybridization conditions can be adjusted by, for example, changing the temperature, salinity and/or concentration of other reagents such as SDS, SSC, etc.
本揭露進一步提供用於將異源多核苷酸遞送至目標標靶細胞的非病毒載體 (例如,質體,其含有編碼本文所揭示的 Grik2靶向抑制性 RNA 劑的多核苷酸)。在其他情況下,本揭露之病毒載體可為 AAV 載體腺病毒、反轉錄病毒、慢病毒或皰疹病毒載體。 The present disclosure further provides non-viral vectors (eg, plasmids containing polynucleotides encoding Grik2- targeting inhibitory RNA agents disclosed herein) for delivering heterologous polynucleotides to target cells of interest. In other cases, the viral vectors of the present disclosure may be AAV vectors, adenovirus, retrovirus, lentivirus or herpes virus vectors.
可以採用一個或多個表現卡匣。各表現卡匣可包括至少一啟動子序列 (例如,神經元細胞啟動子),其可操作地連接至編碼目標 RNA 的序列。各表現卡匣可由額外的調節元件、間隔子、內含子、UTR、多腺苷酸化位點等組成。相對於編碼例如兩種或更多種抑制性 RNA 劑的多核苷酸,表現卡匣可為多順反子的。表現卡匣可進一步包括啟動子、編碼一種或多種目標抑制性 RNA 劑的核酸及多腺苷酸序列。在特定實例中,表現卡匣包括 5'-啟動子序列、編碼第一目標抑制性 RNA 劑的多核苷酸序列 (例如,以下中之任一者:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 以及 SEQ ID NO: 242 至 SEQ ID NO: 245)、編碼第二目標抑制性 RNA 劑的序列 (例如,以下中之任一者:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233、及 SEQ ID NO: 242 至 SEQ ID NO: 245) 及多腺苷酸序列-3'。在較佳之實施例中,該表現卡匣包括序列,該序列與以下項具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 256.在一些實施例中,該表現卡匣具有 SEQ ID NO: 256 之序列。在較佳之實施例中,該表現卡匣包括序列,該序列與以下項具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 257。在一些實施例中,該表現卡匣具有 SEQ ID NO: 257 之序列。One or more presentation cassettes can be used. Each expression cassette can include at least one promoter sequence (e.g., a neuronal cell promoter) operably linked to a sequence encoding the target RNA. Each expression cassette can be composed of additional regulatory elements, spacers, introns, UTRs, polyadenylation sites, etc. Expression cassettes may be polycistronic with respect to polynucleotides encoding, for example, two or more inhibitory RNA agents. The expression cassette may further include a promoter, nucleic acid encoding one or more inhibitory RNA agents of interest, and polyadenylation sequences. In specific examples, the expression cassette includes a 5'-promoter sequence, a polynucleotide sequence encoding a first inhibitory RNA agent of interest (e.g., any of the following: SEQ ID NO: 16 to SEQ ID NO: 30 , SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245), a sequence encoding a second inhibitory RNA agent of interest (e.g., any of the following: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233, and SEQ ID NO: 242 to SEQ ID NO: 245) and polyadenylation sequence -3'. In a preferred embodiment, the performance cassette includes a sequence that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) , 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 256. In some embodiments, the performance cassette has SEQ ID NO: 256 sequence. In a preferred embodiment, the performance cassette includes a sequence that is at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%) , 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 257. In some embodiments, the performance cassette has the sequence of SEQ ID NO: 257.
病毒載體可進一步包括編碼抗生素抗性基因 (諸如 AmpR、康黴素、潮黴素 B、遺傳黴素 (geneticin)、殺稻瘟菌素 S、僅大黴素、卡本西林、氯黴素、諾爾絲菌素或嘌呤黴素的抗性基因) 的核酸序列。 示例性表現卡匣 The viral vector may further include genes encoding antibiotic resistance (such as AmpR, conmycin, hygromycin B, geneticin, blasticidin S, oxymycin only, carbencillin, chloramphenicol, Nourseothricin or puromycin resistance gene) nucleic acid sequence. Example presentation box
本揭露提供表現卡匣,其在併入表現載體 (例如,質體或病毒載體 (例如,AAV 或慢病毒載體)) 內時,促進編碼抑制性 RNA 試劑 (例如,具有以下中之任一項的核酸序列的抑制性 RNA 劑:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 及 SEQ ID NO: 242 至 SEQ ID NO: 245) 的異源多核苷酸的表現,該抑制性 RNA 劑雜交至 Grik2mRNA 並抑制其表現。通常,併入核酸載體內的表現卡匣將包括異源多核苷酸,該異源多核苷酸含有異源基因調節序列 (例如,啟動子 (例如,表11中所述的啟動子中之任一者) 及視情況選用的增強子序列 (例如,表 12 中所述的增強子序列)、5' 側翼序列 (例如,表 13 中所述的 5' 側翼序列)、含有莖環 5' 臂的莖環序列、環序列 (例如,表 13 中所述的微小 RNA 環序列)、莖環 3' 臂、3' 側翼序列 (例如,表 13 中所述的 3' 側翼序列),視情況選用的土撥鼠肝炎轉錄後調節元件 (WRPE) 及多腺苷酸序列 (例如,SEQ ID NO: 213-216)。在 AAV 載體的情況下,表現卡匣可以在其 5' 及 3' 末端分別側接 5' ITR 及 3' ITR 序列 (例如,表 12 中所述的 5' 或 3' ITR 序列中之任一者)。通常,考慮將 AAV2 ITR 序列與本文揭示的方法及組成物結合使用,然而,也可以使用來自本文揭示的其他 AAV 血清型之 ITR 序列 (參見上文「 AAV 載體」部分)。該構建體的一般架構至少包括取向為 5' 到 3' 方向的以下元件: (i) 5' ITR 序列 (僅適用於 AAV 載體;參見表 12); (ii) 啟動子序列 (例如,表 11 中所列的啟動子序列中之任一者); (iii) 5' 側翼序列 (例如,參見表 13); (iv) 莖環序列,其與以下中任一者之核酸序列具有至少 85% (例如,至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96 %、97%、98%、99% 或更多 (例如,100%)) 序列同一性:SEQ ID NO: 1 至 SEQ ID NO: 19、SEQ ID NO: 34 至 SEQ ID NO: 62、SEQ ID NO: 97 至 SEQ ID NO: 108、SEQ ID NO: 133 至 SEQ ID NO: 147、SEQ ID NO: 226 至 SEQ ID NO: 229 以及 SEQ ID NO: 238 至 SEQ ID NO: 241; (v) 視情況,WPRE 序列; (vi) 多腺苷酸序列 (例如,參見表 12);及 (vii) 3' ITR 序列 (僅適用於 AAV 載體;參見表 12)。 The present disclosure provides expression cassettes that, when incorporated into an expression vector (eg, a plasmid or a viral vector (eg, an AAV or a lentiviral vector)), facilitate encoding of an inhibitory RNA agent (eg, having any of the following Inhibitory RNA agents of nucleic acid sequences: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to 120, SEQ ID NO: 139 to SEQ ID NO : 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245), the inhibitory RNA agent hybridizes to Grik2 mRNA and inhibits its expression. Typically, expression cassettes incorporated into nucleic acid vectors will include heterologous polynucleotides containing heterologous gene regulatory sequences (e.g., a promoter (e.g., any of the promoters described in Table 11 a) and optional enhancer sequences (e.g., the enhancer sequences described in Table 12), 5' flanking sequences (e.g., the 5' flanking sequences described in Table 13), stem-loop 5' arms The stem-loop sequence, loop sequence (for example, the microRNA loop sequence described in Table 13), stem-loop 3' arm, and 3' flanking sequence (for example, the 3' flanking sequence described in Table 13) are selected as appropriate. The woodchuck hepatitis post-transcriptional regulatory element (WRPE) and polyadenylation sequence (e.g., SEQ ID NO: 213-216). In the case of AAV vectors, the expression cassette can be expressed at its 5' and 3' ends, respectively. flanked by 5' ITR and 3' ITR sequences (e.g., any of the 5' or 3' ITR sequences described in Table 12). Generally, AAV2 ITR sequences are contemplated for use in conjunction with the methods and compositions disclosed herein , however, ITR sequences from other AAV serotypes disclosed herein may also be used (see " AAV Vectors " section above). The general architecture of this construct includes at least the following elements oriented in the 5' to 3' direction: (i ) 5' ITR sequence (for AAV vectors only; see Table 12); (ii) promoter sequence (e.g., any of the promoter sequences listed in Table 11); (iii) 5' flanking sequence ( For example, see Table 13); (iv) a stem-loop sequence that is at least 85% identical to any of the following nucleic acid sequences (e.g., at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Sequence identity: SEQ ID NO: 1 to SEQ ID NO: 19, SEQ ID NO: 34 to SEQ ID NO: 62, SEQ ID NO: 97 to SEQ ID NO: 108, SEQ ID NO: 133 to SEQ ID NO: 147, SEQ ID NO: 226 to SEQ ID NO: 229 and SEQ ID NO : 238 to SEQ ID NO: 241; (v) WPRE sequence, as appropriate; (vi) polyadenylation sequence (e.g., see Table 12); and (vii) 3' ITR sequence (AAV vectors only; see Table 12).
在特定實例中,隨從序列 (其與以下中之任一者的抑制性 RNA 序列基本上互補:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 以及 SEQ ID NO: 242 至 SEQ ID NO: 245) 相對於以下中之任一者的抑制性 RNA 序列具有不超過 7 (例如,不超過 7、6、5、4、3、2 或 1) 個經錯配之核苷酸 (亦即,錯配):SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233、及 SEQ ID NO: 242 至 SEQ ID NO: 245。在另一實例中,隨從序列 (其與以下中之任一者的抑制性 RNA 序列基本上互補:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 以及 SEQ ID NO: 242 至 SEQ ID NO: 245) 相對於以下中之任一者的抑制性 RNA 序列具有不超過 6 (例如,不超過 6、5、4、3、2 或 1) 個錯配:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233、及 SEQ ID NO: 242 至 SEQ ID NO: 245。在另一實例中,隨從序列 (其與以下中之任一者的抑制性 RNA 序列基本上互補:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 以及 SEQ ID NO: 242 至 SEQ ID NO: 245) 相對於以下中之任一者的抑制性 RNA 序列具有不超過 5 (例如,不超過 5、4、3、2 或 1) 個錯配:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233、及 SEQ ID NO: 242 至 SEQ ID NO: 245。在另一實例中,隨從序列 (其與以下中之任一者的抑制性 RNA 序列基本上互補:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 以及 SEQ ID NO: 242 至 SEQ ID NO: 245) 相對於以下中之任一者的抑制性 RNA 序列具有不超過 4 (例如,不超過 4、3、2 或 1) 個錯配:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233、及 SEQ ID NO: 242 至 SEQ ID NO: 245。在另一實例中,隨從序列 (其與以下中之任一者的抑制性 RNA 序列基本上互補:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 以及 SEQ ID NO: 242 至 SEQ ID NO: 245) 相對於以下中之任一者的抑制性 RNA 序列具有不超過 3 (例如,不超過 3、2 或 1) 個錯配:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233、及 SEQ ID NO: 242 至 SEQ ID NO: 245。在另一實例中,隨從序列 (其與以下中之任一者的抑制性 RNA 序列基本上互補:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 以及 SEQ ID NO: 242 至 SEQ ID NO: 245) 相對於以下中之任一者的抑制性 RNA 序列具有不超過 2 (例如,不超過 2 或 1) 個錯配:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233、及 SEQ ID NO: 242 至 SEQ ID NO: 245。在再一實例中,隨從序列 (其與以下中之任一者的抑制性 RNA 序列基本上互補:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 以及 SEQ ID NO: 242 至 SEQ ID NO: 245) 相對於以下中之任一者的抑制性 RNA 序列具有不超過 1 個錯配:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233、及 SEQ ID NO: 242 至 SEQ ID NO: 245。In a specific example, a satellite sequence that is substantially complementary to an inhibitory RNA sequence of any of: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245) relative to the following The inhibitory RNA sequence of any one of the SEQ. ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO : 230 to SEQ ID NO: 233, and SEQ ID NO: 242 to SEQ ID NO: 245. In another example, a satellite sequence that is substantially complementary to an inhibitory RNA sequence of any of: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245) relative to An inhibitory RNA sequence having no more than 6 (e.g., no more than 6, 5, 4, 3, 2, or 1) mismatches for any of the following: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233, and SEQ ID NO :242 to SEQ ID NO:245. In another example, a satellite sequence that is substantially complementary to an inhibitory RNA sequence of any of: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245) relative to The inhibitory RNA sequence of any of the following has no more than 5 (e.g., no more than 5, 4, 3, 2, or 1) mismatches: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233, and SEQ ID NO: 242 to SEQ ID NO: 245. In another example, a satellite sequence that is substantially complementary to an inhibitory RNA sequence of any of: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245) relative to The inhibitory RNA sequence of any of the following has no more than 4 (e.g., no more than 4, 3, 2, or 1) mismatches: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233, and SEQ ID NO: 242 to SEQ ID NO: 245. In another example, a satellite sequence that is substantially complementary to an inhibitory RNA sequence of any of: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245) relative to The inhibitory RNA sequence of any of the following has no more than 3 (e.g., no more than 3, 2, or 1) mismatches: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233, and SEQ ID NO: 242 to SEQ ID NO :245. In another example, a satellite sequence that is substantially complementary to an inhibitory RNA sequence of any of: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245) relative to The inhibitory RNA sequence of any of the following has no more than 2 (e.g., no more than 2 or 1) mismatches: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79. SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233, and SEQ ID NO: 242 to SEQ ID NO: 245 . In yet another example, a satellite sequence that is substantially complementary to an inhibitory RNA sequence of any of: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245) relative to The inhibitory RNA sequence of any of the following has no more than 1 mismatch: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233, and SEQ ID NO: 242 to SEQ ID NO: 245.
在另一實例中,隨從序列 (其與以下中之任一者的抑制性 RNA 序列基本上互補:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 以及 SEQ ID NO: 242 至 SEQ ID NO: 245) 相對於以下中之任一者的抑制性 RNA 序列具有不超過 10 (例如,不超過 10、9、8、7 或 6) 個經錯配之核苷酸 (亦即,錯配):SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233、及 SEQ ID NO: 242 至 SEQ ID NO: 245。在另一實例中,隨從序列 (其與以下中之任一者的抑制性 RNA 序列基本上互補:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 以及 SEQ ID NO: 242 至 SEQ ID NO: 245) 相對於以下中之任一者的抑制性 RNA 序列具有不超過 9 (例如,不超過 9、8、7 或 6) 個錯配:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233、及 SEQ ID NO: 242 至 SEQ ID NO: 245。在另一實例中,隨從序列 (其與以下中之任一者的抑制性 RNA 序列基本上互補:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 以及 SEQ ID NO: 242 至 SEQ ID NO: 245) 相對於以下中之任一者的抑制性 RNA 序列具有不超過 8 (例如,不超過 8、7 或 6) 個錯配:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233、及 SEQ ID NO: 242 至 SEQ ID NO: 245。在另一實例中,隨從序列 (其與以下中之任一者的抑制性 RNA 序列基本上互補:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 以及 SEQ ID NO: 242 至 SEQ ID NO: 245) 相對於以下中之任一者的抑制性 RNA 序列具有不超過 7 (例如,不超過 7 或 6) 個錯配:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233、及 SEQ ID NO: 242 至 SEQ ID NO: 245。在另一實例中,隨從序列 (其與以下中之任一者的抑制性 RNA 序列基本上互補:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 以及 SEQ ID NO: 242 至 SEQ ID NO: 245) 相對於以下中之任一者的抑制性 RNA 序列具有不超過 6 個錯配:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233、及 SEQ ID NO: 242 至 SEQ ID NO: 245。在另一實例中,隨從序列 (其與以下中之任一者的抑制性 RNA 序列基本上互補:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 以及 SEQ ID NO: 242 至 SEQ ID NO: 245) 相對於以下中之任一者的抑制性 RNA 序列具有不超過 5 個錯配:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233、及 SEQ ID NO: 242 至 SEQ ID NO: 245。在另一實例中,隨從序列 (其與以下中之任一者的抑制性 RNA 序列基本上互補:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 以及 SEQ ID NO: 242 至 SEQ ID NO: 245) 相對於以下中之任一者的抑制性 RNA 序列具有不超過 4 個錯配:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233、及 SEQ ID NO: 242 至 SEQ ID NO: 245。在另一實例中,隨從序列 (其與以下中之任一者的抑制性 RNA 序列基本上互補:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 以及 SEQ ID NO: 242 至 SEQ ID NO: 245) 相對於以下中之任一者的抑制性 RNA 序列具有不超過 3 個錯配:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233、及 SEQ ID NO: 242 至 SEQ ID NO: 245。在另一實例中,隨從序列 (其與以下中之任一者的抑制性 RNA 序列基本上互補:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 以及 SEQ ID NO: 242 至 SEQ ID NO: 245) 相對於以下中之任一者的抑制性 RNA 序列具有不超過 2 個錯配:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233、及 SEQ ID NO: 242 至 SEQ ID NO: 245。在另一實例中,隨從序列 (其與以下中之任一者的抑制性 RNA 序列基本上互補:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233 以及 SEQ ID NO: 242 至 SEQ ID NO: 245) 相對於以下中之任一者的抑制性 RNA 序列具有不超過 1 個錯配:SEQ ID NO: 16 至 SEQ ID NO: 30、SEQ ID NO: 63 至 SEQ ID NO: 79、SEQ ID NO: 109 至 SEQ ID NO: 120、SEQ ID NO: 139 至 SEQ ID NO: 144、SEQ ID NO: 230 至 SEQ ID NO: 233、及 SEQ ID NO: 242 至 SEQ ID NO: 245。In another example, a satellite sequence that is substantially complementary to an inhibitory RNA sequence of any of: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245) relative to An inhibitory RNA sequence that has no more than 10 (eg, no more than 10, 9, 8, 7, or 6) mismatched nucleotides (i.e., mismatches) for any of the following: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233, and SEQ ID NO: 242 to SEQ ID NO: 245. In another example, a satellite sequence that is substantially complementary to an inhibitory RNA sequence of any of: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245) relative to The inhibitory RNA sequence of any of the following has no more than 9 (e.g., no more than 9, 8, 7 or 6) mismatches: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233, and SEQ ID NO: 242 to SEQ ID NO: 245. In another example, a satellite sequence that is substantially complementary to an inhibitory RNA sequence of any of: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245) relative to The inhibitory RNA sequence of any of the following has no more than 8 (e.g., no more than 8, 7, or 6) mismatches: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233, and SEQ ID NO: 242 to SEQ ID NO :245. In another example, a satellite sequence that is substantially complementary to an inhibitory RNA sequence of any of: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245) relative to The inhibitory RNA sequence of any of the following has no more than 7 (eg, no more than 7 or 6) mismatches: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79. SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233, and SEQ ID NO: 242 to SEQ ID NO: 245 . In another example, a satellite sequence that is substantially complementary to an inhibitory RNA sequence of any of: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245) relative to The inhibitory RNA sequence of any of the following has no more than 6 mismatches: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233, and SEQ ID NO: 242 to SEQ ID NO: 245. In another example, a satellite sequence that is substantially complementary to an inhibitory RNA sequence of any of: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245) relative to The inhibitory RNA sequence of any of the following has no more than 5 mismatches: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233, and SEQ ID NO: 242 to SEQ ID NO: 245. In another example, a satellite sequence that is substantially complementary to an inhibitory RNA sequence of any of: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245) relative to The inhibitory RNA sequence of any of the following has no more than 4 mismatches: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233, and SEQ ID NO: 242 to SEQ ID NO: 245. In another example, a satellite sequence that is substantially complementary to an inhibitory RNA sequence of any of: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245) relative to The inhibitory RNA sequence of any of the following has no more than 3 mismatches: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233, and SEQ ID NO: 242 to SEQ ID NO: 245. In another example, a satellite sequence that is substantially complementary to an inhibitory RNA sequence of any of: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245) relative to The inhibitory RNA sequence of any of the following has no more than 2 mismatches: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233, and SEQ ID NO: 242 to SEQ ID NO: 245. In another example, a satellite sequence that is substantially complementary to an inhibitory RNA sequence of any of: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233 and SEQ ID NO: 242 to SEQ ID NO: 245) relative to The inhibitory RNA sequence of any of the following has no more than 1 mismatch: SEQ ID NO: 16 to SEQ ID NO: 30, SEQ ID NO: 63 to SEQ ID NO: 79, SEQ ID NO: 109 to SEQ ID NO: 120, SEQ ID NO: 139 to SEQ ID NO: 144, SEQ ID NO: 230 to SEQ ID NO: 233, and SEQ ID NO: 242 to SEQ ID NO: 245.
多基因polygene miRNAmiRNA 匣box
側翼/主幹-環圈/側翼構建體 (例如 pri-miRNA) 可視為單一 miRNA「匣」並且可以串接 (例如,以由一個或多個啟動子驅動的多基因排列提供)。多個 (例如,至少 2、3、4、5、6、7、8、9、10 或更多) pre-miR 主幹-環圈序列可以嵌入較長轉錄本的任意多核苷酸序列中 (例如內含子) 或內源性 microRNA 側翼序列 (每個主幹-環圈的 5' 及 3',諸如 -5p 及 -3p 序列) 之間。可以在專用啟動子的控制下表現每個 pre-miR 主幹-環圈序列 (例如,作為具有單獨啟動子序列的多基因構建體,每個啟動子序列獨立調節個別 pre-miR 主幹-環圈序列的表現;即,每個啟動子均獨立於另一個啟動子運行來產生個別的 microRNA)。已經證明,可以提供至少 5-bp 延伸主幹的側翼序列足以用於主幹-環圈的加工 (Sun 等人 BioTechniques.41:59-63,2006 年 7 月,藉由引用併入本文)。間隔區序列可位於第一 miRNA 表現匣的 3' 側翼序列與第二 miRNA 表現匣的 5' 側翼序列之間。間隔區序列可能源自編碼或非編碼 (例如內含子) 序列,並且具有不同的長度,但不視為主幹-環圈-側翼序列的一部分 (Rousset, F. 等人, Molecular Therapy : Nucleic Acids,14:352-63,2019,藉由引用併入本文。) Flank/trunk-loop/flank constructs (eg, pri-miRNA) can be viewed as single miRNA "cassettes" and can be concatenated (eg, provided in a multigene array driven by one or more promoters). Multiple (e.g., at least 2, 3, 4, 5, 6, 7, 8, 9, 10, or more) pre-miR backbone-loop sequences can be embedded in any polynucleotide sequence of a longer transcript (e.g., introns) or endogenous microRNA flanking sequences (5' and 3' of each backbone-loop, such as -5p and -3p sequences). Each pre-miR backbone-loop sequence can be expressed under the control of a dedicated promoter (e.g., as a multigene construct with separate promoter sequences, each promoter sequence independently regulating individual pre-miR backbone-loop sequences performance; that is, each promoter operates independently of the other promoter to produce individual microRNAs). It has been shown that flanking sequences that provide at least a 5-bp extension of the backbone are sufficient for backbone-loop processing (Sun et al . BioTechniques. 41:59-63, July 2006, incorporated herein by reference). The spacer sequence may be located between the 3' flanking sequence of the first miRNA expression cassette and the 5' flanking sequence of the second miRNA expression cassette. Spacer sequences may originate from coding or noncoding (e.g., intronic) sequences and be of varying lengths but are not considered part of the stem-loop-flanking sequence (Rousset, F. et al., Molecular Therapy : Nucleic Acids , 14:352-63, 2019, incorporated herein by reference.)
實例性表現匣可包括含有以下的核苷酸序列:(a) 編碼第一 miRNA 序列的第一多核苷酸,該序列包含與 Grik2mRNA 雜交的引導 RNA 序列;及 (b) 編碼第二 miRNA 序列的第二多核苷酸,該序列包含與 Grik2mRNA 雜交的引導 RNA 序列。例如,表現匣從 5' 到 3' 可以包括:(a) 位於引導股 5' 的第一 5' 側翼區,所述第一側翼區包括與其序列相同的第一 5' 側翼序列 (例如,參見表 13);(b) 第一主幹-環圈結構,其包括 SEQ ID NO:1-19、34-62、97-108、133-147、226-229 及 238-241 中任一者的多核苷酸(c) 位於所述隨從股 3' 的第一 3' 側翼區 (例如,參見表 13) 及 3' 間隔區序列;(d) 位於引導股 5' 的第二 5' 側翼區 (例如,參見表 13);(e) 第二主幹-環圈結構,其包括 SEQ ID NO:1-15、46-62、97-108、133-138、226-229 及 238-214 中任一者的多核苷酸;(f) 第二 3' 側翼區,包括位於隨從股 3' 的 3' 側翼序列 (例如,參見表 13)。在某些實施例中,表現匣從 5' 到 3' 可以包括:(a) 位於引導股 5' 的第一 5' 側翼區,所述第一側翼區包括與其序列相同的第一 5' 側翼序列 (例如,參見表 13);(b) 第一主幹-環圈結構,包括任何一個或多個 SEQ ID NO:4、19 及 34 的多核苷酸;(c) 位於所述隨從股 3' 及 3' 間隔區序列的第一 3' 側翼區 (例如,參見表 13);(d) 位於引導股 5' 的第二 5' 側翼區域 (例如,參見表 13);(e)第二主幹-環圈結構,其包括 SEQ ID NO:135、141 及 147 中任何一者或多者的多核苷酸;(f) 第二 3' 側翼區,包括位於隨從股 3' 的 3' 側翼序列 (例如,參見表 13)。在某些實施例中,第一及第二主幹-環圈結構的序列被逆轉,使得第一主幹-環圈結構包括 SEQ ID NO:135、141 及 147 中任一者的多核苷酸,並且第二主幹-環圈結構包括 SEQ ID NO:4、19 及及 34 中任一者的多核苷酸。 Exemplary expression cassettes can include a nucleotide sequence that includes: (a) a first polynucleotide encoding a first miRNA sequence that includes a guide RNA sequence that hybridizes to Grik2 mRNA; and (b) encoding a second miRNA. The second polynucleotide of the sequence contains the guide RNA sequence that hybridizes to Grik2 mRNA. For example, the expression cassette from 5' to 3' may include: (a) a first 5' flanking region located 5' of the leading strand, said first flanking region including a first 5' flanking sequence identical to its sequence (e.g., see Table 13); (b) first backbone-loop structure, which includes the multi-core of any one of SEQ ID NOs: 1-19, 34-62, 97-108, 133-147, 226-229 and 238-241 The nucleotide (c) is located in the first 3' flanking region 3' of the follower strand (e.g., see Table 13) and the 3' spacer sequence; (d) is located in the second 5' flanking region 5' of the leader strand (e.g., see Table 13) , see Table 13); (e) a second backbone-loop structure, which includes any one of SEQ ID NOs: 1-15, 46-62, 97-108, 133-138, 226-229 and 238-214 The polynucleotide; (f) the second 3' flanking region, including the 3' flanking sequence located 3' of the follower strand (eg, see Table 13). In certain embodiments, the expression cassette from 5' to 3' may include: (a) a first 5' flanking region located at 5' of the leading strand, said first flanking region including a first 5' flanking region that is identical in sequence to Sequence (e.g., see Table 13); (b) a first backbone-loop structure, including any one or more of the polynucleotides of SEQ ID NO: 4, 19, and 34; (c) located 3' of the slave strand and the first 3' flanking region of the 3' spacer sequence (e.g., see Table 13); (d) the second 5' flanking region located 5' of the guide strand (e.g., see Table 13); (e) the second backbone - a loop structure, which includes the polynucleotide of any one or more of SEQ ID NO: 135, 141 and 147; (f) a second 3' flanking region, including a 3' flanking sequence located 3' of the follower strand ( For example, see Table 13). In certain embodiments, the sequences of the first and second backbone-loop structures are reversed such that the first backbone-loop structure includes the polynucleotide of any one of SEQ ID NOs: 135, 141, and 147, and The second backbone-loop structure includes the polynucleotide of any one of SEQ ID NOs: 4, 19, and 34.
可自表 13 選擇第一 5' 側翼序列、第一 3' 側翼序列、第二 5' 側翼序列及第二 3' 側翼序列。The first 5' flanking sequence, the first 3' flanking sequence, the second 5' flanking sequence and the second 3' flanking sequence can be selected from Table 13.
多順反子或多基因 rAAV 表現構建體可包括由順序 (例如,連續或非連續) miRNA 編碼的多核苷酸 X 1組成的轉殖基因,諸如 (X 1) n。X 1多核苷酸包括表 3、5、7 及 9 中列出的引導-隨從對中任一者、表 13 中列出的 5' 及 3' 側翼序列中任一者,以及表 13 中列出的環圈序列中任一者。多順反子轉殖基因具有分子式 (X 1) n, 處於單一啟動子的控制下,此單一啟動子位於轉殖基因 5' 端,使得啟動子及轉殖基因的分子式為啟動子-(X 1) n,其中 n 是 1-10 的整數 (例如 1、2、3、4、5、6 、7、8、9 或 10)。多基因構建體還可在構建體的 3' 端包含填充序列 (例如,SEQ ID NO:250 或 SEQ ID NO: 251) 以提高載體的生產效率。 A polycistronic or multigene rAAV expression construct may include a transgene consisting of sequential (eg, contiguous or non-contiguous) miRNA-encoding polynucleotides X1 , such as ( X1 ) n . The Any of the loop sequences out. The polycistronic transgenic gene has the molecular formula (X 1 ) n and is under the control of a single promoter. This single promoter is located at the 5' end of the transgenic gene, so that the molecular formula of the promoter and the transgenic gene is promoter-(X 1 ) n , where n is an integer from 1 to 10 (such as 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10). Multigene constructs can also include stuffer sequences (eg, SEQ ID NO: 250 or SEQ ID NO: 251) at the 3' end of the construct to increase vector production efficiency.
雙pair miRNAmiRNA 雙啟動子表現匣dual promoter expression cassette
含有多個 (例如,至少 2、3、4、5、6、7、8、9、10 或更多) pre-miR 主幹-環圈序列的多基因表現匣可包括多個啟動子序列,以調節每個單獨的 pre-miR 主幹-環圈序列的表現,使得每個單獨的 pre-miR 主幹-環圈序列可操作地連接至專用的啟動子序列。在這種情況下,表現構建體具有 (啟動子-X 1) n公式結構,其中 X 1是 SEQ ID NO:1-19、34-62、97-108、133-147、226-229 及 238-241 中任一者的 多核苷酸,且 n 是 1-10 的整數 (例如 1、2、3、4、5、6、 7、8、9 或 10)。額外的調節元件,諸如增強子序列、終止子序列、多腺苷酸化訊號序列、內含子及/或能夠形成二級結構的序列,諸如本文揭露的調節元件中之任一者,可以可操作地連接至啟動子-X 1結構的 5' 端及/或 3' 端。 Multigene expression cassettes containing multiple (e.g., at least 2, 3, 4, 5, 6, 7, 8, 9, 10, or more) pre-miR backbone-loop sequences can include multiple promoter sequences to The performance of each individual pre-miR stem-loop sequence is modulated such that each individual pre-miR stem-loop sequence is operably linked to a dedicated promoter sequence. In this case, the expression construct has the formula structure (Promoter- X1 ) n , where -241, and n is an integer from 1 to 10 (eg, 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10). Additional regulatory elements, such as enhancer sequences, terminator sequences, polyadenylation signal sequences, introns, and/or sequences capable of forming secondary structures, such as any of the regulatory elements disclosed herein, may be operable Groundly connected to the 5' end and/or 3' end of the promoter-X 1 structure.
在特定實例中,雙 miRNA 表現匣包括兩個 pre-miR 主幹-環圈序列,每個序列都處於個別啟動子序列 (例如,本文揭露的啟動子序列) 的控制下。雙 miRNA 匣中的兩個啟動子可以是相同的啟動子或不同的啟動子。In a specific example, a dual-miRNA expression cassette includes two pre-miR backbone-loop sequences, each sequence is under the control of an individual promoter sequence (e.g., the promoter sequences disclosed herein). The two promoters in a dual-miRNA cassette can be the same promoter or different promoters.
在具體實例中,雙 miRNA 表現匣從 5' 到 3' 包括包含下列的核苷酸序列:(a) 第一啟動子序列 (例如本文揭露的任一啟動子序列,例如表 11、例如 hSyn 啟動子或 CaMKII 啟動子;(b) 位於第一主幹-環圈序列 5' 的第一 5' 側翼區 (例如,參見表 13);(c)第一主幹-環圈序列,其包括 SEQ ID NO:1-19、34-62、97-108、133-147、226-229 及 238-241 中任一者的多核苷酸;(d) 位於第一個引導核苷酸序列 3' 的第一 3' 側翼區 (例如,參見表 13);(e) 第二啟動子序列 (例如,參見表 11),或其具有至少 85% (至少 86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%) 的變異,或更多 (例如,100%) 與其序列同一性;(f) 位於第二主幹-環圈序列 5' 的第二 5' 側翼區 (例如,參見表 13);(g) 第二個主幹-環圈序列,包括 SEQ ID NO:1-19、34-62、97-108、133-147、226-229 及 238-241 中任一者的多核苷酸;(h) 位於多核苷酸 3' 的第二 3' 側翼區 (例如,參見表 13)。如果需要,hSyn 啟動子及 CaMKII 啟動子可以替換為包含巨細胞病毒增強子 (例如,CAG 或 CBA)、U6、H1 或 7SK 啟動子的組成型啟動子。In a specific example, the dual-miRNA expression cassette includes the following nucleotide sequences from 5' to 3': (a) a first promoter sequence (such as any promoter sequence disclosed herein, such as Table 11, such as hSyn promoter promoter or CaMKII promoter; (b) a first 5' flanking region located 5' to the first stem-loop sequence (eg, see Table 13); (c) a first stem-loop sequence including SEQ ID NO. : The polynucleotide of any one of 1-19, 34-62, 97-108, 133-147, 226-229 and 238-241; (d) The first nucleotide located 3' of the first guide nucleotide sequence 3' flanking region (e.g., see Table 13); (e) second promoter sequence (e.g., see Table 11), or it has at least 85% (at least 86%, 87%, 88%, 89%, 90% , 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%) of the variation, or more (e.g., 100%) identical to its sequence; (f) located in section The second 5' flanking region 5' of the two backbone-loop sequences (for example, see Table 13); (g) the second backbone-loop sequence, including SEQ ID NOs: 1-19, 34-62, 97- The polynucleotide of any one of 108, 133-147, 226-229, and 238-241; (h) a second 3' flanking region located 3' of the polynucleotide (eg, see Table 13). If necessary, hSyn The promoter and the CaMKII promoter can be replaced with a constitutive promoter containing the cytomegalovirus enhancer (eg, CAG or CBA), U6, H1, or 7SK promoter.
在另一實例中,第一啟動子為 SYN 啟動子 (例如,參見表 11),第二啟動子為 CAMKII 啟動子 (例如,參見表 11)。In another example, the first promoter is a SYN promoter (e.g., see Table 11) and the second promoter is a CAMKII promoter (e.g., see Table 11).
可以在 10-1500 (例如,20-1400、30-1300、40-1200、50-1100、60-1000、70-900、80-800、90-700、100-600、200-500 或 300-400) 個核苷酸的範圍內確定上述雙 miRNA 表現匣中描述之序列的序列同一性。例如,可以在 10 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 20 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 30 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 40 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 50 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 60 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 70 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 80 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 90 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 100 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 150 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 200 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 250 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 300 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 350 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 400 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 450 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 500 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 550 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 600 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 650 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 700 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 750 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 800 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 850 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 900 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 950 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 1000 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 1100 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 1200 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 1300 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在另一實例中,在 1400 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。在又另一實例中,在 1500 個核苷酸上確定與上述雙 miRNA 表現匣的序列同一性。Can range from 10-1500 (for example, 20-1400, 30-1300, 40-1200, 50-1100, 60-1000, 70-900, 80-800, 90-700, 100-600, 200-500 or 300- The sequence identity of the sequences described in the above dual-miRNA expression box was determined within a range of 400) nucleotides. For example, sequence identity to the dual-miRNA expression cassette described above can be determined over 10 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined over 20 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined over 30 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined over 40 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined over 50 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined over 60 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined at 70 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined over 80 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined over 90 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined over 100 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined over 150 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined over 200 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined over 250 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined over 300 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined at 350 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined over 400 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined at 450 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined over 500 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined at 550 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined over 600 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined at 650 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined at 700 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined at 750 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined over 800 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined at 850 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined over 900 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined at 950 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined over 1000 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined at 1100 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined over 1200 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined at 1300 nucleotides. In another example, sequence identity to the dual-miRNA expression cassette described above was determined at 1400 nucleotides. In yet another example, sequence identity to the dual-miRNA expression cassette described above was determined over 1500 nucleotides.
上述雙 miRNA 表現匣可包括為突觸蛋白啟動子及/或鈣/鈣調蛋白依賴性蛋白質激酶 II 啟動子的啟動子。The dual-miRNA expression cassette may include a promoter that is a synaptophysin promoter and/or a calcium/calmodulin-dependent protein kinase II promoter.
適用於與本文揭露的雙 miRNA 表現匣結合使用的微小 RNA 環圈序列可以為 E-miR-30、miR-218-1 或 E-miR-124-3 環圈序列。MicroRNA loop sequences suitable for use in conjunction with the dual-miRNA expression cassette disclosed herein may be E-miR-30, miR-218-1, or E-miR-124-3 loop sequences.
本揭露的雙 miRNA 表現匣也可以在表現匣的 5' 端併入 5'-ITR (例如,參見表 12),並在表現匣的 3' 端併入 3'-ITR (例如,參見表 12)。The dual-miRNA expression cassette of the present disclosure can also incorporate a 5'-ITR at the 5' end of the expression cassette (e.g., see Table 12) and a 3'-ITR at the 3' end of the expression cassette (e.g., see Table 12 ).
此外,本文揭露的雙 miRNA 表現構建體可以包括在第一 3' 側翼區的 3' 端與第二啟動子的 5' 端之間可操作連接的第一多腺苷酸化 (polyA) 訊號,及/或在第二 3' 側翼區的第二 3' 端與 3' ITR 之間可操作地連接的第二 polyA 訊號。第一 polyA 訊號及第二 polyA 訊號可以相同 (例如,均為 RBG 或 BGH polyA 訊號) 或不同 (例如,第一 polyA 訊號為 RBG polyA,第二 polyA 訊號為 BGH polyA;或第一 polyA 訊號為 BGH polyA,第二 polyA 訊號為 RBG polyA)。 包含多個 miRNA 序列之 AAV 載體的製造改良 Additionally, the dual-miRNA expression constructs disclosed herein may include a first polyadenylation (polyA) signal operably linked between the 3' end of the first 3' flanking region and the 5' end of the second promoter, and or a second polyA signal operably linked between the second 3' end of the second 3' flanking region and the 3' ITR. The first polyA signal and the second polyA signal can be the same (for example, both are RBG or BGH polyA signals) or different (for example, the first polyA signal is RBG polyA, the second polyA signal is BGH polyA; or the first polyA signal is BGH polyA, the second polyA signal is RBG polyA). Improved production of AAV vectors containing multiple miRNA sequences
使用編碼單一或雙 miRNA 表現匣 (例如,本文揭露的表現匣) 的質體製備 AAV 載體,可能會因 AAV 基因體包裝不當而受到阻礙。首先,pri-miRNA 序列很短 (小於 200 個鹼基),其取決於啟動子長度,並設計具有控制單一 miRNA 表現之單一啟動子的轉殖基因匣,可能導致 AAV 基因體明顯短於 AAV 的最大包裝容量 (約 4.8 kb)。因此,如果預期的全基因體長度小於 2.4 kb (AAV 包裝容量的一半),則單一殼體可能會加載多個載體基因體。此可透過聚合酶讀取來調解,而無需適當的核酸內切酶切口,從而產生 AAV 基因體二聚體 (或三聚體),如果多聚體長度合適,則可以將其包裝至 AAV 殼體中。這隨後在 AAV 載體顆粒群體中引入了顯著的異質性,這使得藥物產品的製造及特性化變得更加困難。Preparation of AAV vectors using plasmids encoding single or dual miRNA expression cassettes (e.g., the expression cassettes disclosed herein) may be hampered by improper AAV genome packaging. First, the pri-miRNA sequence is very short (less than 200 bases), which depends on the promoter length, and designing a transgene cassette with a single promoter controlling the expression of a single miRNA may result in an AAV genome that is significantly shorter than that of AAV. Maximum packaging capacity (approximately 4.8 kb). Therefore, a single capsid may be loaded with multiple vector genomes if the expected full genome length is less than 2.4 kb (half the AAV packaging capacity). This can be mediated by polymerase readout without the need for appropriate endonuclease nicking, resulting in AAV genome dimers (or trimers) that can be packaged into AAV if the multimer is of appropriate length. in the shell. This subsequently introduces significant heterogeneity within the AAV vector particle population, which makes the manufacture and characterization of drug products more difficult.
其次,由於包含髮夾結構,以 shRNA 及 miRNA 為基礎的轉殖基因本身俱有顯著的二級結構。已經證明,AAV 基因體內的這些內部二級結構可以在 AAV 基因體複製及包裝過程中充當「偽」ITR,致使截短事件及包含完整及部分載體基因體混合物的 AAV 載體顆粒異質群體。Secondly, due to the inclusion of hairpin structures, transgenic genes based on shRNA and miRNA themselves have significant secondary structures. It has been shown that these internal secondary structures within the AAV genome can act as “pseudo” ITRs during AAV genome replication and packaging, resulting in truncation events and a heterogeneous population of AAV vector particles containing a mixture of complete and partial vector genomes.
我們已經發現,使用額外的序列 (例如,額外的 pre-miRNA 主幹-環圈序列、第二啟動子序列、填充序列 (例如,SEQ ID NO:250 或 SEQ ID NO: 251)、使用自補的 AAV 載體等) 填充大小低於 AAV 包裝容量的 AAV 基因體,透過避免部分 (即截短的) AAV 基因體的複製數量併入並防止或減少多重包裝事件來大大改善 AAV 包裝。因此,本文所述的構建體透過將上述序列併入 AAV 表現匣,以將載體大小增加至更接近最大 AAV 包裝容量的值,來避免 AAV 基因體的不當包裝。在某些實施例中,載體包含一個或多個 (例如,1、2 或更多個) 填充序列。在某些實施例中,一個或多個填充序列位於表現匣的 3' 端。在某些實施例中,一個或多個填充序列與 SEQ ID NO:250 中的核酸序列具有至少 85% (例如,至少 86%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 的序列同一性。在某些實施例中,一個或多個填充序列與 SEQ ID NO:250 中的核酸序列具有至少 90% (例如,至少 91%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 的序列同一性。在某些實施例中,一個或多個填充序列與 SEQ ID NO:250 中的核酸序列具有至少 95% (例如,至少 96%、97%、98%、99% 或更多 (例如,100%)) 的序列同一性。在某些實施例中,一個或多個填充序列與 SEQ ID NO:250 中的核酸序列具有至少 99% 的序列同一性。在某些實施例中,一個或多個填充序列具有 SEQ ID NO:250 中的核酸序列。在某些實施例中,一個或多個填充序列與 SEQ ID NO:251 中的核酸序列具有至少 85% (例如,至少 86%、90%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 的序列同一性。在某些實施例中,一個或多個填充序列與 SEQ ID NO:251 中的核酸序列具有至少 90% (例如,至少 91%、95%、96%、97%、98%、99% 或更多 (例如,100%)) 的序列同一性。在某些實施例中,一個或多個填充序列與 SEQ ID NO:251 中的核酸序列具有至少 95% (例如,至少 96%、97%、98%、99% 或更多 (例如,100%)) 的序列同一性。在某些實施例中,一個或多個填充序列與 SEQ ID NO:251 中的核酸序列具有至少 99% 的序列同一性。在某些實施例中,一個或多個填充序列具有 SEQ ID NO:251 中的核酸序列。We have found that using additional sequences (e.g., additional pre-miRNA backbone-loop sequences, second promoter sequences, filler sequences (e.g., SEQ ID NO: 250 or SEQ ID NO: 251), using self-complementary AAV vectors, etc.) fill AAV genomes with sizes below the AAV packaging capacity, greatly improving AAV packaging by avoiding the incorporation of copy numbers of partial (i.e. truncated) AAV genomes and preventing or reducing multiple packaging events. Therefore, the constructs described herein avoid inappropriate packaging of AAV genomes by incorporating the above sequences into the AAV expression cassette to increase the vector size to a value closer to the maximum AAV packaging capacity. In certain embodiments, the vector contains one or more (e.g., 1, 2, or more) stuffer sequences. In certain embodiments, one or more stuffer sequences are located at the 3' end of the presentation cassette. In certain embodiments, one or more filler sequences are at least 85% (e.g., at least 86%, 90%, 95%, 96%, 97%, 98%, 99%) identical to the nucleic acid sequence in SEQ ID NO: 250 % or more (e.g., 100%)) sequence identity. In certain embodiments, one or more filler sequences are at least 90% identical (e.g., at least 91%, 95%, 96%, 97%, 98%, 99%, or more) to the nucleic acid sequence in SEQ ID NO: 250. Multiple (e.g., 100%)) sequence identity. In certain embodiments, one or more filler sequences are at least 95% (e.g., at least 96%, 97%, 98%, 99%, or more (e.g., 100%) identical to the nucleic acid sequence in SEQ ID NO: 250 )) sequence identity. In certain embodiments, one or more filler sequences have at least 99% sequence identity with the nucleic acid sequence in SEQ ID NO:250. In certain embodiments, one or more filler sequences have the nucleic acid sequence in SEQ ID NO:250. In certain embodiments, one or more filler sequences are at least 85% (e.g., at least 86%, 90%, 95%, 96%, 97%, 98%, 99%) identical to the nucleic acid sequence in SEQ ID NO: 251 % or more (e.g., 100%)) sequence identity. In certain embodiments, one or more filler sequences are at least 90% identical to the nucleic acid sequence in SEQ ID NO: 251 (e.g., at least 91%, 95%, 96%, 97%, 98%, 99%, or more Multiple (e.g., 100%)) sequence identity. In certain embodiments, one or more filler sequences are at least 95% (e.g., at least 96%, 97%, 98%, 99%, or more (e.g., 100%) identical to the nucleic acid sequence in SEQ ID NO: 251 )) sequence identity. In certain embodiments, the one or more filler sequences have at least 99% sequence identity with the nucleic acid sequence in SEQ ID NO: 251. In certain embodiments, one or more filler sequences have the nucleic acid sequence in SEQ ID NO: 251.
例如,在某些情況下,表現一個受單一啟動子控制的 miRNA 或來自兩個不同啟動子的兩個 miRNA 之構建體 (雙構建體法),可能無法像 體外 / 離體 / 電腦模擬評估所預測的那樣在體內執行。在這些情況下,可以實施以下策略來建立基因體長度,從而產生同質、全長、單獨包裝的 AAV 載體顆粒群體。 For example, in some cases, constructs expressing one miRNA under the control of a single promoter or two miRNAs from two different promoters (dual construct approach) may not perform as well as in vitro / ex vivo / in silico evaluations. Perform as predicted in vivo. In these cases, the following strategies can be implemented to establish genome length and thereby generate a homogenous, full-length, individually packaged population of AAV vector particles.
首先,如果需要表現單一 miRNA「引導」,可以新增填充序列 (例如,SEQ ID NO:250 或 SEQ ID NO: 251),以增加 AAV 載體基因體的總長度而不破壞啟動子或 miR 匣本身。此填充序列可以新增至轉殖基因匣的下游 (polyA 序列的 3') 。在某些實施例中,AAV 載體包括與 SEQ ID NO:252-257 中任一者具有至少 85% (例如,至少 86%、87%、88%、89%、90%、95%、99% 或更多 (例如,100%)) 序列同一性的序列。在一較佳的實施例中,AAV 載體包括 SEQ ID NO:252-257 中任一者的序列。可變更該填充序列的長度及內容,同時保留其提高 AAV 包裝同質性的能力。此外,此填充序列可以放置在啟動子的上游 (5')。填充序列可用於 scAAV 載體或單股 (ss)AAV 載體。 First, if a single miRNA "guide" needs to be expressed, a filler sequence (e.g., SEQ ID NO: 250 or SEQ ID NO: 251) can be added to increase the total length of the AAV vector genome without damaging the promoter or the miR cassette itself. . This stuffer sequence can be added downstream of the transgene cassette (3' to the polyA sequence) . In certain embodiments, the AAV vector comprises at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 95%, 99%) identical to any one of SEQ ID NOs: 252-257 or more (e.g., 100%)) sequence identity. In a preferred embodiment, the AAV vector includes the sequence of any one of SEQ ID NOs: 252-257. The length and content of this padding sequence can be varied while retaining its ability to improve AAV packaging homogeneity. Additionally, this filler sequence can be placed upstream (5') of the promoter. Stuffer sequences can be used with scAAV vectors or single-stranded (ss) AAV vectors.
其次,如果要表現多個 miRNA 但選擇了單一啟動子策略,則可以透過多個 miRNA 匣的串聯來製備載體。雖然使用相同支架串聯多個 miRNA 匣 (例如,最多 5 個 miRNA 匣) 可致使載體基因體內同源序列間的重組,但使用具有非同源側翼及環圈序列的不同支架串聯 miRNA 匣可以改善此包裝問題。如果包含額外的 miRNA 匣不會產生適當長度的載體基因體,則可以如上所述併入填充序列增加長度以提高包裝效率。在某些實施例中,AAV 載體包括與 SEQ ID NO:252-257 中任一者具有至少 85% (例如,至少 86%、87%、88%、89%、90%、95%、99% 或更多 (例如,100%)) 序列同一性的序列。在一較佳的實施例中,AAV 載體包括 SEQ ID NO:252-257 中任一者的序列。Secondly, if multiple miRNAs are to be expressed but a single promoter strategy is chosen, vectors can be prepared by concatenating multiple miRNA cassettes. Although using the same scaffold to tandem multiple miRNA cassettes (e.g., up to 5 miRNA cassettes) can lead to recombination between homologous sequences within the vector gene, using different scaffolds to tandem miRNA cassettes with non-homologous flanking and looping sequences can improve this. Packaging issues. If inclusion of additional miRNA cassettes does not result in vector gene bodies of appropriate length, filler sequences can be incorporated as described above to increase length to increase packaging efficiency. In certain embodiments, the AAV vector comprises at least 85% (e.g., at least 86%, 87%, 88%, 89%, 90%, 95%, 99%) identical to any one of SEQ ID NOs: 252-257 or more (e.g., 100%)) sequence identity. In a preferred embodiment, the AAV vector includes the sequence of any one of SEQ ID NOs: 252-257.
昆蟲表現載體insect expression vector
本文所述的抑制性多核苷酸也可以在合適的昆蟲表達載體 (例如病毒載體,諸如桿狀病毒病毒載體) 中編碼並在昆蟲表現系統中表現。在某些實施例中,本文所述的抑制性多核苷酸可以併入核酸載體 (例如,桿狀病毒載體或以桿狀病毒為基礎的載體、反轉錄病毒載體或其他病毒載體)、轉染至昆蟲細胞株 (例如,Sf9 細胞),並在允許多核苷酸表現的條件下培養。例如,可使用本揭露的抑制性多核苷酸短暫或穩定轉染昆蟲細胞株 (例如,Sf9 細胞)。The inhibitory polynucleotides described herein may also be encoded in a suitable insect expression vector (e.g., a viral vector, such as a baculovirus viral vector) and expressed in an insect expression system. In certain embodiments, inhibitory polynucleotides described herein can be incorporated into a nucleic acid vector (e.g., a baculovirus or baculovirus-based vector, a retroviral vector, or other viral vector), transfected to an insect cell line (e.g., Sf9 cells) and cultured under conditions that allow expression of the polynucleotide. For example, insect cell lines (e.g., Sf9 cells) can be transiently or stably transfected using inhibitory polynucleotides of the present disclosure.
桿狀病毒傳送載體及與其相對應的改造宿主細胞為市售可得,例如 pAcGP67、pAcSECG2TA、pVL1392、pVL1393、pAcGHLT、pAcAB4; pBAC-3、pBAC6、pBACgus-6、pBACsurf-1、pPolh-FLAG 及 pPolh-MAT。用於桿狀病毒及昆蟲細胞表現系統的方法是本領域眾所周知的,如 Summers 及 Smith 的 Texas Agricultural Experiment Station Bulletin No. 1555 (1987) 以及 Luckow 和 Summers 的 Bio/Technology 6:47 (1988) 中所述,藉由引用併入本文。本領域技術人員應當理解,表現系統不限於桿狀病毒表現系統。重要的是表現系統允許表現本揭露的抑制性多核苷酸。例如,其他合適的昆蟲表現系統包括昆蟲痘病毒系統 (昆蟲媽媽病毒) 及細胞質多角體病毒 (CPV) 系統。Baculovirus delivery vectors and their corresponding modified host cells are commercially available, such as pAcGP67, pAcSECG2TA, pVL1392, pVL1393, pAcGHLT, pAcAB4; pBAC-3, pBAC6, pBACgus-6, pBACsurf-1, pPolh-FLAG and pPolh-MAT. Methods for baculovirus and insect cell expression systems are well known in the art and are described in Summers and Smith, Texas Agricultural Experiment Station Bulletin No. 1555 (1987) and Luckow and Summers, Bio/Technology 6:47 (1988) are incorporated herein by reference. Those skilled in the art will understand that the expression system is not limited to the baculovirus expression system. Importantly, the expression system allows expression of inhibitory polynucleotides of the present disclosure. For example, other suitable insect expression systems include the entomopoxvirus system (insect mother virus) and the cytoplasmic polyhedrosis virus (CPV) system.
細菌表現載體bacterial expression vector
標準細菌載體包括例如噬菌體 X 及 M13,以及質體,諸如 pBR322、pSKF 及 pET23D。在某些實施例中,可將本文所述的抑制性多核苷酸或編碼相同的核酸載體併入質體或備選的細菌表現載體中,並在允許多核苷酸表現的條件下培養。Pouwels 等人描述了適用於細菌宿主細胞的選殖及表達載體。(選殖載體:實驗室手冊,Elsevier,紐約,1985 年)。實例性細菌菌株可包括 大腸桿菌、 枯草桿菌、 腸道沙門氏菌或能夠表現異源多核苷酸的任何細菌菌株。通常包含在細菌表達載體中的元件包括複製子 (一種編碼抗生素抗性的基因,允許選擇含有重組質體的細菌),以及質體非必需區域中允許插入重組序列的獨特限制性位點。 醫藥組成物 Standard bacterial vectors include, for example, phages X and M13, and plasmids such as pBR322, pSKF and pET23D. In certain embodiments, an inhibitory polynucleotide described herein, or a nucleic acid vector encoding the same, can be incorporated into a plasmid or alternative bacterial expression vector and cultured under conditions that allow expression of the polynucleotide. Cloning and expression vectors suitable for use in bacterial host cells are described by Pouwels et al. (Selective vectors: a laboratory manual, Elsevier, New York, 1985). Exemplary bacterial strains may include E. coli , Bacillus subtilis , Salmonella enterica , or any bacterial strain capable of expressing a heterologous polynucleotide. Elements commonly included in bacterial expression vectors include a replicon (a gene encoding antibiotic resistance that allows selection of bacteria containing recombinant plastids), and unique restriction sites in non-essential regions of the plastid that allow the insertion of recombinant sequences. pharmaceutical composition
本文所述的抑制性多核苷酸或編碼相同的核酸載體可以配製成醫藥組成物,以適於 體內投藥的生物相容形式投藥至哺乳動物 (例如人) 受試者。 The inhibitory polynucleotides described herein, or nucleic acid vectors encoding the same, can be formulated into pharmaceutical compositions for administration to mammalian (eg, human) subjects in a biocompatible form suitable for in vivo administration.
可以在任何合適的載體中配製本文揭露的組成物以傳送給受試者 (例如,人)。例如,可以配製成醫藥上可接受的懸浮液、分散體、溶液或乳液。合適的介質包括鹽水及脂質體製劑。更具體而言,醫藥上可接受的載體可以包括非水溶液的無菌水溶液、懸浮液及乳液。重組人類白蛋白 (rAlbumin Human NF RECOMBUMIN® Prime) 也可用作 AAV 載體的穩定劑 (Albumedix,英國諾丁漢)。非水溶劑的實例為丙二醇、聚乙二醇、植物油 (諸如橄欖油) 及可注射的有機酯 (諸如油酸乙酯)。水性載體包括水、醇/水溶液、乳液或懸浮液,包括鹽水及緩衝介質。適用於靜脈內投藥的載體包括液體及營養補充劑、電解質補充劑 (諸如以林格氏葡萄糖注射液為基礎的補充劑) 等。The compositions disclosed herein may be formulated in any suitable carrier for delivery to a subject (e.g., human). For example, a pharmaceutically acceptable suspension, dispersion, solution or emulsion may be formulated. Suitable media include saline and liposomal formulations. More specifically, pharmaceutically acceptable carriers may include non-aqueous sterile aqueous solutions, suspensions, and emulsions. Recombinant human albumin (rAlbumin Human NF RECOMBUMIN® Prime) can also be used as a stabilizer for AAV vectors (Albumedix, Nottingham, UK). Examples of non-aqueous solvents are propylene glycol, polyethylene glycol, vegetable oils such as olive oil, and injectable organic esters such as ethyl oleate. Aqueous carriers include water, alcoholic/aqueous solutions, emulsions or suspensions, including saline and buffered media. Carriers suitable for intravenous administration include liquid and nutritional supplements, electrolyte supplements (such as supplements based on Ringer's Dextrose Injection), etc.
也可存在防腐劑及其他添加劑,例如抗微生物劑、抗氧化劑、螯合劑及惰性氣體等。Preservatives and other additives such as antimicrobials, antioxidants, chelating agents and inert gases may also be present.
膠體分散系統也可用於標靶基因遞送。膠體分散系統包括大分子複合物、奈米膠囊、微球、珠子及以脂質為基礎的系統,包括水包油乳液、微胞、混合微胞及脂質體。Colloidal dispersion systems can also be used for targeted gene delivery. Colloidal dispersion systems include macromolecular complexes, nanocapsules, microspheres, beads, and lipid-based systems including oil-in-water emulsions, microcells, mixed microcells, and liposomes.
本文所述的組成物可以游離鹼的形式、以鹽的形式、溶劑化物及作為前驅藥使用。所有形式都在本文所述的方法之內。根據本揭露的方法,所描述的化合物或鹽、溶劑化物或前驅藥可以根據選擇的投藥途徑以多種形式投藥於患者。The compositions described herein can be used in the free base form, in salt form, solvates and as prodrugs. All forms are within the methods described in this article. According to the methods of the present disclosure, the described compounds or salts, solvates or prodrugs can be administered to a patient in a variety of forms depending on the chosen route of administration.
因此,本文所述的組成物可以配製用於例如透過口服、非口服、鞘內、腦室內、實質內、口腔、舌下、鼻內、直腸、貼劑、泵或皮膚滲透投藥,並且相應配製醫藥組成物。非口服投藥包括靜脈內、腹膜內、皮下、肌內、經上皮、鼻內、肺內、鞘內、腦室內、實質內、直腸及局部投藥方式。非口服投藥可以透過在選定的時間段內連續輸注。Thus, the compositions described herein may be formulated for administration, for example, by oral, parenteral, intrathecal, intracerebroventricular, intraparenchymal, buccal, sublingual, intranasal, rectal, patch, pump, or dermal penetration, and formulated accordingly Pharmaceutical compositions. Parenteral administration includes intravenous, intraperitoneal, subcutaneous, intramuscular, transepithelial, intranasal, intrapulmonary, intrathecal, intracerebroventricular, intraparenchymal, rectal and topical administration. Parenteral administration can be by continuous infusion over a selected period of time.
本文所述試劑的溶液可以在與表面活性劑 (諸如羥丙基纖維素) 適度混合的水中製備。分散體亦可在甘油、液體聚乙二醇、DMSO 及其具備或不具備醇的混合物及油中製備。在一般儲存及使用條件下,這些製劑可能含有防腐劑以防止微生物生長。用於選擇和製備合適配方的常規程序及成分在如 Remington's Pharmaceutical Sciences (2012 年,第 22 版) 及美國藥典中有所描述:國家處方集 (USP 41 NF 36),於 2018 年出版。適用於注射使用的醫藥形式包括無菌水溶液或分散體,以及用於即時調配無菌注射溶液或分散體的無菌粉劑。在所有情況下,形式必須是無菌的,並且必須為流動的,可以輕鬆透過注射器投藥。局部、區域或全身投藥也可能是合適的。本文所述的組成物可以透過向目標部位投藥注射或多次注射來有利接觸,例如間隔大約 1 公分間距。Solutions of the agents described herein can be prepared in water moderately mixed with a surfactant such as hydroxypropylcellulose. Dispersions can also be prepared in glycerin, liquid polyethylene glycol, DMSO, and their mixtures and oils with or without alcohols. Under normal conditions of storage and use, these preparations may contain preservatives to prevent the growth of microorganisms. General procedures and ingredients for selecting and preparing appropriate formulations are described in, e.g., Remington's Pharmaceutical Sciences (2012, 22nd ed.) and United States Pharmacopeia: National Formulary (USP 41 NF 36), published in 2018. Pharmaceutical forms suitable for injectable use include sterile aqueous solutions or dispersions and sterile powders for the extemporaneous preparation of sterile injectable solutions or dispersions. In all cases, the form must be sterile and must be free-flowing and ready for administration via a syringe. Local, regional or systemic administration may also be appropriate. The compositions described herein can be advantageously contacted by administering an injection or multiple injections to the target site, for example, spaced approximately 1 centimeter apart.
本文所述的組成物可單獨或與醫藥上可接受的載體組合投藥於動物 (例如人),如本文所述,其比例取決於化合物的溶解度及化學性質、選擇的投藥途徑及標準的醫藥職業規範。The compositions described herein may be administered to animals (e.g., humans) alone or in combination with a pharmaceutically acceptable carrier, in proportions that depend on the solubility and chemical properties of the compounds, the chosen route of administration, and standard medical practice, as described herein. norm.
因此,本揭露提供了一種醫藥組成物,其包含本文揭露的抑制性 RNA 試劑 (例如 siRNA、shRNA、miRNA 或 shmiRNA)。尤其,本揭露提供了包含載體的組成物,所述載體包含本揭露的抑制性 RNA 試劑。在特定實例中,本揭露提供包含載體 (例如慢病毒或 AAV 載體) 的醫藥組成物,所述載體包括可操作地連接至啟動子之本揭露的抑制性 RNA,如本文所揭露。醫藥組成物可包括 AAV 載體,其載體包括 (a) 病毒殼體;及 (b) 人工多核苷酸,包括側接 AAV ITR 的表現匣,其中表現匣包括編碼抑制性多核苷酸的多核苷酸,該抑制性多核苷酸結合並抑制 Grik2mRNA 的表現,可操作地連接至一個或多個控制 CNS 細胞中多核苷酸表現的調節序列。 Accordingly, the present disclosure provides a pharmaceutical composition comprising an inhibitory RNA agent (eg, siRNA, shRNA, miRNA or shmiRNA) disclosed herein. In particular, the present disclosure provides compositions comprising a vector comprising an inhibitory RNA agent of the present disclosure. In specific examples, the present disclosure provides pharmaceutical compositions comprising a vector (eg, a lentiviral or AAV vector) that includes an inhibitory RNA of the present disclosure operably linked to a promoter, as disclosed herein. The pharmaceutical composition may comprise an AAV vector comprising (a) a viral capsid; and (b) an artificial polynucleotide comprising a presentation cassette flanked by an AAV ITR, wherein the presentation cassette comprises a polynucleotide encoding an inhibitory polynucleotide , the inhibitory polynucleotide binds to and inhibits the expression of Grik2 mRNA and is operably linked to one or more regulatory sequences that control the expression of the polynucleotide in CNS cells.
本文揭露的抑制性 RNA 試劑可與醫藥上可接受的賦形劑及任選的緩釋基質 (諸如生物可降解聚合物) 結合,以形成醫藥組成物。「醫藥上」或「醫藥上可接受之」是指當向哺乳動物尤其是人類 (適當時) 投藥時不產生不良、過敏性、或其他不良反應的分子實體及組成物。醫藥上可接受的載體或賦形劑是指任何類型的無毒固體、半固體或液體填充劑、稀釋劑、封裝材料或配方助劑。本文揭露的醫藥組成物可以配製用於腦內 (例如腦實質內或腦室內)、肌內、靜脈內、皮膚滲透、局部、口服、舌下、皮下或直腸投藥。The inhibitory RNA agents disclosed herein can be combined with pharmaceutically acceptable excipients and optional sustained-release matrices, such as biodegradable polymers, to form pharmaceutical compositions. "Pharmaceutically" or "pharmaceutically acceptable" refers to molecular entities and compositions that do not produce adverse, allergic, or other adverse reactions when administered to mammals, especially humans (where appropriate). A pharmaceutically acceptable carrier or excipient means any type of non-toxic solid, semi-solid or liquid filler, diluent, encapsulating material or formulation aid. The pharmaceutical compositions disclosed herein may be formulated for intracerebral (e.g., intraparenchymal or intracerebroventricular), intramuscular, intravenous, skin-penetrating, topical, oral, sublingual, subcutaneous, or rectal administration.
組成物的活性成分 (例如標靶 Grik2的抑制性 RNA 試劑),單獨或與另一種治療試劑組合,可以作為與常規醫藥支持物的混合物,以單位投藥形式向有需要的受試者投藥。合適的單位投藥形式包括口服途徑形式 (諸如片劑、凝膠膠囊、粉劑、顆粒劑及口服懸浮液或溶液)、舌下及口腔投藥形式、氣溶膠、植入物、皮下、皮膚滲透、局部、腹膜內、肌內、靜脈內、皮下、皮膚滲透、鞘內、腦內、立體定位及鼻內投藥形式以及直腸投藥形式。通常,對於能注射的配方而言,醫藥組成物包含醫藥上可接受的載體。這些可以特別是等滲的、無菌的、鹽溶液 (磷酸一鈉或磷酸二鈉、氯化鈉、氯化鉀、氯化鈣或氯化鎂等或這些鹽類的混合物),或乾燥的、特別是冷凍乾燥的組成物,其在添加時取決於如果是無菌水或生理鹽水,可配製為注射液。 The active ingredient of the composition (eg, an inhibitory RNA agent targeting Grik2 ), alone or in combination with another therapeutic agent, can be administered to a subject in need thereof as a mixture with conventional pharmaceutical supports in a unit dosage form. Suitable unit dosage forms include oral route forms (such as tablets, gel capsules, powders, granules and oral suspensions or solutions), sublingual and buccal dosage forms, aerosols, implants, subcutaneous, transdermal, topical , intraperitoneal, intramuscular, intravenous, subcutaneous, skin penetration, intrathecal, intracerebral, stereotaxic and intranasal administration forms as well as rectal administration forms. Typically, for injectable formulations, the pharmaceutical composition includes a pharmaceutically acceptable carrier. These can be in particular isotonic, sterile, saline solutions (mono- or disodium phosphate, sodium chloride, potassium chloride, calcium chloride or magnesium chloride, etc. or mixtures of these salts), or dry, in particular The freeze-dried composition, which at the time of addition depends on whether it is sterile water or physiological saline, can be formulated as an injection solution.
適用於注射的醫藥形式包括無菌水溶液或分散體、包括芝麻油、花生油或丙二醇水溶液的配方,以及用於臨時製備無菌可注射溶液或分散體的無菌粉劑。在所有情況下,形式必須為無菌並且必須是流動的以利便於注射。其必須在製造及儲存條件下保持穩定,並且必須能夠抵抗諸如細菌及真菌等微生物的污染作用。包括本揭露的化合物作為游離鹼或醫藥上可接受之鹽類的溶液,可以在與表面活性劑 (諸如羥丙基纖維素) 適度混合的水中製備。Pharmaceutical forms suitable for injection include sterile aqueous solutions or dispersions, formulations including sesame oil, peanut oil, or aqueous propylene glycol solutions, and sterile powders for the extemporaneous preparation of sterile injectable solutions or dispersions. In all cases, the form must be sterile and must be free-flowing to facilitate injection. It must remain stable under the conditions of manufacture and storage and must be resistant to the contaminating effects of microorganisms such as bacteria and fungi. Solutions including compounds of the present disclosure as free bases or pharmaceutically acceptable salts can be prepared in water moderately mixed with a surfactant such as hydroxypropylcellulose.
分散體亦可在甘油、液體聚乙二醇及其混合物及油中製備。在一般儲存及使用條件下,這些製劑可能含有防腐劑以防止微生物生長。本文揭露的抑制性多核苷酸試劑可以配製成中性或鹽形式的組成物。醫藥上可接受的鹽類包括酸加成鹽 (與蛋白質的游離胺基形成),以及與無機酸 (例如鹽酸或磷酸) 或有機酸 (諸如乙酸、草酸、酒石酸、扁桃酸等) 形成的鹽類。與游離羧基形成的鹽類還可以衍生自:無機鹼,諸如氫氧化鈉、氫氧化鉀、氫氧化銨、氫氧化鈣或氫氧化鐵,以及有機鹼,諸如異丙胺、三甲胺、組胺酸、普魯卡因等。載體也可以是溶劑或分散介質,例如含有水、乙醇、多元醇 (例如甘油、丙二醇及液態聚乙二醇等)、其適當的混合物及植物油。合適的流動性可藉由使用塗層 (例如卵磷脂)、藉由保持所需的粒徑 (對於分散體) 以及藉由使用界面活性劑來保持。Dispersions can also be prepared in glycerin, liquid polyethylene glycols, mixtures thereof and oils. Under normal conditions of storage and use, these preparations may contain preservatives to prevent the growth of microorganisms. The inhibitory polynucleotide agents disclosed herein can be formulated as neutral or salt form compositions. Pharmaceutically acceptable salts include acid addition salts (formed with free amine groups of proteins), and salts with inorganic acids (such as hydrochloric acid or phosphoric acid) or organic acids (such as acetic acid, oxalic acid, tartaric acid, mandelic acid, etc.) class. Salts formed with free carboxyl groups can also be derived from: inorganic bases, such as sodium, potassium, ammonium, calcium or ferric hydroxide, and organic bases, such as isopropylamine, trimethylamine, histidine , procaine, etc. The carrier can also be a solvent or dispersion medium, such as water, ethanol, polyols (such as glycerol, propylene glycol, liquid polyethylene glycol, etc.), appropriate mixtures thereof, and vegetable oils. Proper flowability can be maintained by using coatings (eg lecithin), by maintaining the required particle size (for dispersions) and by using surfactants.
可藉由各種抗菌劑及抗真菌劑 (諸如對羥基苯甲酸酯、三氯丁醇、苯酚、山梨酸、硫柳汞等) 來防止微生物的作用。在某些情況下,本揭露的醫藥組成物可以包括等滲劑,諸如糖或氯化鈉。The action of microorganisms can be prevented by various antibacterial and antifungal agents (such as parabens, chlorobutanol, phenol, sorbic acid, thimerosal, etc.). In some cases, pharmaceutical compositions of the present disclosure may include an isotonic agent, such as sugar or sodium chloride.
可藉由使用延遲吸收的試劑 (諸如單硬脂酸鋁及明膠) 來延長可注射組成物的吸收。藉由將所需量的活性試劑摻入適當的溶劑以及所需的以下枚舉之多種其他成分中,隨後過濾除菌,來製備無菌可注射溶液。通常,藉由將各種滅菌後的活性成分併入含有基本分散介質及本文揭露的那些所需其他成分的無菌載劑中來製備分散體。對於用於製備無菌注射液的無菌粉末,較佳的製備方法可能是真空乾燥及冷凍乾燥技術,該技術可從先前過濾後的無菌溶液中得到活性成分與任何其他所需成分的粉末。配製後,溶液將以與劑量要求相容的方式及治療有效的量投藥。Prolonged absorption of the injectable compositions may be prolonged by the use of agents that delay absorption such as aluminum monostearate and gelatin. Sterile injectable solutions are prepared by incorporating the required amount of the active agent in the appropriate solvent and various other ingredients enumerated below as required, followed by filtered sterilization. Generally, dispersions are prepared by incorporating the various sterilized active ingredients into a sterile vehicle which contains a basic dispersion medium and the required other ingredients as disclosed herein. For sterile powders for the preparation of sterile injectable solutions, the preferred preparation methods may be vacuum drying and freeze-drying techniques, which can obtain a powder of the active ingredient and any other desired ingredients from a previously filtered sterile solution. Once formulated, the solution will be administered in a manner compatible with dosage requirements and in a therapeutically effective amount.
這些配方很容易以多種劑型投藥,諸如上述可注射溶液的類型,但也可以使用藥物釋放膠囊等。例如,對於在水溶液中的非口服投藥,如果需要,應適當地緩衝溶液並且首先用足夠的鹽水或葡萄糖使液體稀釋劑成為等滲透壓。這些特定的水溶液特別適用於靜脈內、肌內、皮下及腹膜內投藥。可以使用的無菌水性介質是本領域熟知的。例如,可以將一劑量溶解在 1 mL 等滲 NaCl 溶液中,然後添加至 1000 mL 皮下注射液中,或在指定的輸注部位注射。根據接受治療的受試者情況,劑量必然會發生某些變化。在任何情況下,負責投藥的從業人員均可使用適當的患者資訊及本領域公認的方法,來確定個體受試者的適當劑量。 診斷方法 These formulations are easily administered in a variety of dosage forms, such as the types of injectable solutions mentioned above, but drug release capsules may also be used. For example, for parenteral administration in aqueous solutions, the solution should be appropriately buffered if necessary and the liquid diluent first made isotonic with sufficient saline or glucose. These specific aqueous solutions are particularly suitable for intravenous, intramuscular, subcutaneous and intraperitoneal administration. Sterile aqueous media that can be used are well known in the art. For example, one dose can be dissolved in 1 mL of isotonic NaCl solution and added to 1000 mL of subcutaneous injection or injected at a designated infusion site. Certain variations in dosage will necessarily occur depending on the subject being treated. In any case, the administering practitioner can use appropriate patient information and art-recognized methods to determine the appropriate dosage for the individual subject. diagnostic methods
可以例如使用本領域熟知的方法診斷受試者 (例如人類受試者) 患有癲癇 (例如 TLE),並且因此鑑定為需要使用本文揭露的組成物及方法進行治療。例如,可以透過神經生理學測試來指導受試者癲癇的診斷,以鑑定受試者大腦中的致癲癇病灶及癲癇狀活動的嚴重程度。本領域熟知的實例性神經生理學測試方法包括腦波圖 (EEG)、腦磁圖 (MEG)、功能性 MRI (fMRI)、單光子發射電腦斷層掃描 (SPECT) 及正子發射斷層掃描 (PET)。EEG 及 MEG 提供了具有高時間解析度的皮質層功能連續測量,並有助於偵測發作間期 (癲癇發作之間的時期) 癲癇樣放電,這可能表示對受試者的癲癇病症進行了陽性診斷。可以比較受試者的大腦活動相對於適合受試者年齡、病史及生活方式的標準 (例如參考人群,諸如非癲癇患者人群),以確定診斷受試者患有癲癇症。A subject (e.g., a human subject) can be diagnosed with epilepsy (e.g., TLE), for example, using methods well known in the art, and thus identified as being in need of treatment using the compositions and methods disclosed herein. For example, the diagnosis of epilepsy in a subject can be guided by neurophysiological testing to identify epileptogenic lesions in the subject's brain and the severity of epileptiform activity. Example neurophysiological testing methods well known in the art include electroencephalography (EEG), magnetoencephalography (MEG), functional MRI (fMRI), single photon emission computed tomography (SPECT), and positron emission tomography (PET) . EEG and MEG provide continuous measurements of cortical function with high temporal resolution and aid in the detection of interictal (the period between epileptic seizures) epileptiform discharges, which may indicate changes in the subject's epilepsy disorder. Positive diagnosis. The subject's brain activity can be compared to standards appropriate for the subject's age, medical history, and lifestyle (e.g., a reference population, such as a non-epileptic patient population) to determine a diagnosis of epilepsy in the subject.
受試者可能被診斷為患有多種癲癇病症中的任何一種,包括但不限於 TLE (例如 mTLE 或 lTLE)、良性 Rolandic 癲癇、額葉癲癇、嬰兒點頭性痙攣症、青少年肌陣攣性癲癇、青少年失神性癲癇、兒童失神性癲癇 (pyknolepsy)、熱水性癲癇、Lennox-Gastaut 症候群、Landau-Kleffner 症候群、Dravet 症候群、進行性肌陣攣性癲癇、反射性癲癇、Rasmussen 症候群、邊緣性癲癇、癲癇重積狀態、腹部癲癇、大規模雙側肌陣攣、月經性癲癇、Jacksonian 癲癇症、Lafora 症及光敏性癲癇。在癲癇病症是 TLE 的情況下,TLE 的特徵可能是局部或全身性的癲癇發作。Subjects may be diagnosed with any of a variety of epilepsy conditions, including but not limited to TLE (e.g., mTLE or lTLE), benign Rolandic epilepsy, frontal lobe epilepsy, infantile nodding spasms, juvenile myoclonic epilepsy, adolescent Absence epilepsy, childhood absence epilepsy (pyknolepsy), hot water epilepsy, Lennox-Gastaut syndrome, Landau-Kleffner syndrome, Dravet syndrome, progressive myoclonic epilepsy, reflex epilepsy, Rasmussen syndrome, borderline epilepsy, epilepsy Retention status, abdominal epilepsy, massive bilateral myoclonus, menstrual epilepsy, Jacksonian epilepsy, Lafora syndrome, and photosensitive epilepsy. In cases where the epilepsy condition is TLE, TLE may be characterized by focal or generalized seizures.
可以使用揭露的方法為基礎,將致癲癇病灶定位至特定大腦區域 (例如內側顳葉、外側額葉、額葉等),診斷出患者的癲癇類型。癲癇大腦活動的電生理學特徵也可用於鑑定受試者中癲癇的特定類型或亞型。例如,皮質區域 (例如海馬迴或大腦皮質) 中存在快速 (250-600 Hz) 尖波紋波 (SPW-Rs) 可能表示受試者的 TLE 診斷呈陽性。在另一個實例中,Lennox-Gastaut 症候群的特徵通常是在新皮質及丘腦中記錄到快速電圖振盪 (10-15 Hz)。此外,如果患者明顯表現出癲癇發作的行為表現,諸如全身性痙攣、暫時失神 (意識層級下降持續約 10 秒)、緊張、肌陣攣、腸或膀胱失控、咬舌頭、疲勞、頭痛、說話困難、異常行為 (例如,不動的凝視或手或嘴的自發運動)、精神病及/或局部無力,在住院場所中對受試者的影像監控可能表示患者的癲癇診斷。診斷為癲癇之受試者的自我報告症狀也可能表示診斷呈陽性。此類自我報告的症狀可能包括似曾相識或從未見過的感覺、先兆、健忘症、自發及無故的恐懼和焦慮、噁心、聽覺、視覺、嗅覺、味覺或觸覺幻覺、視覺扭曲 (例如視物顯大症或視物顯小症)、解離或現實感喪失、連帶感覺、煩躁或心情愉快的感覺、恐懼、憤怒或難以形容的感覺。 醫藥用途 Based on the revealed method, the epileptogenic lesions can be localized to specific brain regions (such as the medial temporal lobe, lateral frontal lobe, frontal lobe, etc.) and the patient's epilepsy type can be diagnosed. Electrophysiological characterization of epileptic brain activity can also be used to identify specific types or subtypes of epilepsy in subjects. For example, the presence of fast (250-600 Hz) spike-wave ripples (SPW-Rs) in cortical regions such as the hippocampus or cerebral cortex may indicate a positive diagnosis of TLE in a subject. In another example, Lennox-Gastaut syndrome is often characterized by fast electrographic oscillations (10-15 Hz) recorded in the neocortex and thalamus. In addition, if the patient exhibits obvious behavioral manifestations of an epileptic seizure, such as generalized convulsions, temporary absence of consciousness (decreased level of consciousness lasting approximately 10 seconds), nervousness, myoclonus, bowel or bladder loss, tongue biting, fatigue, headache, difficulty speaking, , abnormal behavior (e.g., immobile gaze or spontaneous movements of the hands or mouth), psychosis, and/or focal weakness, imaging monitoring of subjects in the inpatient setting may indicate a diagnosis of epilepsy in the patient. Self-reported symptoms in subjects diagnosed with epilepsy may also indicate a positive diagnosis. Such self-reported symptoms may include familiar or never-before-seen sensations, auras, amnesia, spontaneous and unprovoked fear and anxiety, nausea, auditory, visual, olfactory, gustatory or tactile hallucinations, visual distortions (e.g. visual distortions) major or micropsia), dissociation or derealization, joint sensations, irritability or euphoria, fear, anger, or indescribable feelings. medicinal purposes
透過投藥上述組成物 (例如抑制性 RNA 試劑或編碼相同的核酸載體),本文揭露了治療診斷患有或有風險發展為癲癇病症受試者的癲癇 (例如 TLE) 治療方法。投藥後,本揭露的抑制性 RNA 試劑能夠結合至 Grik2mRNA 並抑制其表現。透過本文揭露的抑制性 RNA 試劑對 Grik2的標靶作用可證實,第一細胞或細胞組 (例如神經細胞;此類細胞可能存在,例如,在受試者中或在源自受試者的樣品中) 表現的 Grik2mRNA 濃度降低,其中細胞轉錄 Grik2並且細胞已處理或已被處理 (例如,透過使一個或多個細胞與本揭露的抑制性多核苷酸接觸,或透過投藥本揭露的抑制性多核苷酸至其中細胞存在或曾經存在的受試者)。在具體實例中, Grik2的表現在第一細胞或細胞組中減少,相較於第二細胞或細胞組,第二細胞或細胞組與第一細胞或細胞組本質上相同,但沒有或沒有被經過如此處理 (對照細胞未使用抑制性多核苷酸處理或未使用標靶感興趣基因的抑制性多核苷酸處理)。感興趣基因 (例如 Grik2) 的 mRNA 濃度降低程度可以用以下方式表現: Disclosed herein are methods of treating epilepsy (eg, TLE) in subjects diagnosed with or at risk of developing the epilepsy disorder by administering the above compositions (eg, inhibitory RNA agents or nucleic acid vectors encoding the same). After administration, the inhibitory RNA reagents of the present disclosure are able to bind to Grik2 mRNA and inhibit its expression. Targeting of Grik2 by inhibitory RNA reagents disclosed herein can demonstrate that a first cell or group of cells (e.g., neural cells; such cells may be present, e.g., in a subject or in a sample derived from the subject Medium) exhibits a decrease in Grik2 mRNA concentration in which the cell transcribes Grik2 and the cell has been treated or has been treated (e.g., by contacting one or more cells with an inhibitory polynucleotide of the disclosure, or by administering an inhibitory polynucleotide of the disclosure) polynucleotide to a subject in which the cell exists or has existed). In a specific example, the expression of Grik2 is reduced in a first cell or group of cells compared to a second cell or group of cells that is substantially the same as the first cell or group of cells but is not or has not been After such treatment (control cells are not treated with inhibitory polynucleotides or are not treated with inhibitory polynucleotides that target the gene of interest). The degree of reduction in the mRNA concentration of the gene of interest (eg Grik2 ) can be expressed in the following way:
可根據與感興趣基因的表現功能相關參數的減少來評估基因 (例如 Grik2基因) 表現濃度的變化,例如感興趣基因的蛋白質表現或蛋白質下游的訊號。無論是內源還是來自表現構建體的異源,並透過本領域已知的任何測定法,可以在表現感興趣基因的任何細胞中確定感興趣基因表現濃度的變化。 Changes in the expression concentration of a gene (eg, the Grik2 gene) can be assessed based on a decrease in a parameter related to the expressed function of the gene of interest, such as protein expression of the gene of interest or signaling downstream of the protein. Changes in the expression concentration of a gene of interest can be determined in any cell expressing the gene of interest, whether endogenous or heterologous from the expression construct, and by any assay known in the art.
透過細胞或細胞組表現的 GluK2 蛋白質濃度降低可證實 Grik2表現濃度的變化 (例如,源自受試者樣品中表現的 GluK2 蛋白質濃度)。如上所述,為了評估 Grik2mRNA 抑制,處理細胞或細胞組中 GluK2 蛋白質表現濃度的變化可以同樣表示為對照細胞或細胞組中蛋白質濃度的百分比。 Changes in Grik2 expressed concentration can be evidenced by a decrease in GluK2 protein concentration expressed by a cell or group of cells (e.g., derived from the GluK2 protein concentration expressed in a subject's sample). As described above, to assess Grik2 mRNA inhibition, changes in the apparent concentration of GluK2 protein in treated cells or groups of cells can similarly be expressed as a percentage of the protein concentration in control cells or groups of cells.
可用於評估 Grik2基因表現變化的對照細胞或細胞組包括尚未與本揭露之抑制性多核苷酸接觸的細胞或細胞組。例如,使用抑制性多核苷酸治療受試者前,對照細胞或細胞組可能源自於個體受試者 (例如人類或動物受試者)。 Control cells or cell groups that can be used to evaluate changes in Grik2 gene expression include cells or cell groups that have not been contacted with inhibitory polynucleotides of the present disclosure. For example, control cells or groups of cells may be derived from an individual subject (eg, a human or animal subject) prior to treating the subject with an inhibitory polynucleotide.
可以使用本領域已知用於評估 mRNA 表現的任何方法,來確定細胞或細胞組表現的 Grik2mRNA 濃度。例如,可透過檢測轉錄的多核苷酸或其中部分 (例如 mRNA) 來確定樣品中 Grik2mRNA 的表現濃度。可使用 RNA 萃取技術從細胞中萃取 RNA,包括例如使用酸酚/異硫氰酸胍萃取 (RNAzol B;Biogenesis)、RNEASY TMRNA 製備套組 (Qiagen) 或 PAXgene (PreAnalytix,瑞士)。利用核糖核酸雜交的典型測定法形式包括核連續測定法、RT-PCR、RNase 保護測定法、北方點墨法、原位雜交及微陣列分析。可使用 PCT 出版物 WO2012/177906 中描述的方法檢測循環 mRNA,其全部內容藉由引用併入本文。也可使用核酸探針確定感興趣基因的表現濃度。如本文所用,術語「探針」是指能夠選擇性結合至特定序列 (例如 mRNA) 的任何分子。可使用本領域熟知及常規的方法合成探針或由適當的生物製劑衍生探針。可專門設計用於標記的探針。可作為探針的分子實例包括但不限於 RNA、DNA、蛋白質、抗體及有機分子。 The Grik2 mRNA concentration expressed by a cell or group of cells can be determined using any method known in the art for assessing mRNA expression. For example, the apparent concentration of Grik2 mRNA in a sample can be determined by detecting the transcribed polynucleotide or portion thereof (eg, mRNA). RNA can be extracted from cells using RNA extraction techniques, including, for example, the use of acid phenol/guanidinium isothiocyanate extraction (RNAzol B; Biogenesis), RNEASY ™ RNA Preparation Kit (Qiagen), or PAXgene (PreAnalytix, Switzerland). Typical assay formats utilizing ribonucleic acid hybridization include nuclear run-on assays, RT-PCR, RNase protection assays, Northern blotting, in situ hybridization, and microarray analysis. Circulating mRNA can be detected using the method described in PCT publication WO2012/177906, the entire content of which is incorporated herein by reference. Nucleic acid probes can also be used to determine the expressed concentration of a gene of interest. As used herein, the term "probe" refers to any molecule capable of selectively binding to a specific sequence (eg, mRNA). Probes may be synthesized or derived from appropriate biological agents using methods well known and routine in the art. Probes can be specially designed for labeling. Examples of molecules that can serve as probes include, but are not limited to, RNA, DNA, proteins, antibodies, and organic molecules.
分離的 mRNA 可用於雜交或擴增測定法,包括但不限於南方或北方分析、聚合酶連鎖反應 (PCR) 分析及探針陣列。一種用於確定 mRNA 濃度的方法,涉及將分離的 mRNA 及可與感興趣基因 mRNA 雜交的核酸分子 (探針) 接觸。可將 mRNA 固定在固體表面上並與探針接觸,例如透過在瓊脂凝膠上執行分離的 mRNA 並將 mRNA 從凝膠轉移至膜,諸如硝酸纖維素。探針也可以固定在固體表面上,並且 mRNA 與探針接觸,例如在 AFFYMETRIX 基因晶片陣列中。本領域已知的 mRNA 檢測方法可適用於確定感興趣基因的 mRNA 濃度。Isolated mRNA can be used in hybridization or amplification assays, including, but not limited to, Southern or Northern analysis, polymerase chain reaction (PCR) analysis, and probe arrays. A method for determining mRNA concentration that involves contacting isolated mRNA with a nucleic acid molecule (probe) that hybridizes to the mRNA of the gene of interest. The mRNA can be immobilized on a solid surface and contacted with the probe, such as by performing separation of the mRNA on an agar gel and transferring the mRNA from the gel to a membrane, such as nitrocellulose. Probes can also be immobilized on a solid surface and the mRNA contacted with the probe, such as in the AFFYMETRIX GeneChip Array. mRNA detection methods known in the art can be adapted to determine the mRNA concentration of the gene of interest.
用於確定樣品中感興趣基因表現濃度的替代方法涉及樣品中例如 mRNA 的核酸擴增及/或反轉錄酶 (用於製備 cDNA) 過程,例如透過 RT-PCR ( Mullis 提出的試驗性實例,1987,美國專利第 4,683,202 號)、連接酶連鎖反應 (Barany (1991) Proc.Natl.Acad.Sci.美國 88:189-193)、自持序列複製 (Guatelli 等人(1990) Proc.Natl.Acad.Sci.美國 87:1874-1878)、轉錄放大系統 (Kwoh 等人(1989) Proc.Natl.Acad.Sci.美國 86:1173-1177)、Q-Beta 複製酶 (Lizardi 等人(1988) Bio/Technology 6:1197)、滾環複製 (Lizardi 等人,美國專利第 5,854,033 號) 或任何其他核酸擴增方法,然後使用本領域熟知的技術檢測擴增分子。如果此類核酸分子的數量非常少,這些檢測方案對檢測核酸分子特別有用。在本揭露的具體方面,感興趣基因的表現濃度透過定量螢光 RT-PCR (即 TAQMAN TM系統) 或 DUAL-GLO® 螢光素酶分析法來確定。 Alternative methods for determining the expression concentration of a gene of interest in a sample involve amplification of nucleic acids such as mRNA in the sample and/or reverse transcriptase (for preparation of cDNA) processes, such as by RT-PCR (Experimental example by Mullis, 1987 , U.S. Patent No. 4,683,202), ligase chain reaction (Barany (1991) Proc.Natl.Acad.Sci. United States 88:189-193), self-sustaining sequence replication (Guatelli et al. (1990) Proc.Natl.Acad.Sci .USA 87:1874-1878), transcription amplification system (Kwoh et al. (1989) Proc.Natl.Acad.Sci. USA 86:1173-1177), Q-Beta replicase (Lizardi et al. (1988) Bio/Technology 6:1197), rolling circle replication (Lizardi et al., U.S. Patent No. 5,854,033), or any other nucleic acid amplification method, and the amplified molecules are then detected using techniques well known in the art. These detection protocols are particularly useful for detecting nucleic acid molecules if the number of such nucleic acid molecules is very small. In specific aspects of the present disclosure, the expression concentration of the gene of interest is determined by quantitative fluorescent RT-PCR (i.e., TAQMAN ™ System) or DUAL-GLO® Luciferase Assay.
可使用膜轉漬 (諸如用於雜交分析,例如北方、南方、墨點等) 或微孔、樣品管、凝膠、珠子或纖維 (或任何固體支持物,包括結合的核酸) 監控感興趣基因的 mRNA 濃度表現。參見美國專利第 5,770,722 號;第 5,874,219 號;第 5,744,305 號;第 5,677,195 號;以及第 5,445,934 號,其藉由引用併入本文。基因表現濃度的確定也可包括使用溶液中的核酸探針。Genes of interest can be monitored using membrane blots (such as for hybridization assays such as Northern, Southern, blot, etc.) or microwells, sample tubes, gels, beads or fibers (or any solid support, including bound nucleic acids) Expression of mRNA concentration. See U.S. Patent Nos. 5,770,722; 5,874,219; 5,744,305; 5,677,195; and 5,445,934, which are incorporated herein by reference. Determination of gene expression concentrations may also involve the use of nucleic acid probes in solution.
也可使用分支 DNA (bDNA) 測定法或即時 PCR (qPCR) 評估 mRNA 表現濃度。在本文提供的實例中描述及舉例說明這種 PCR 方法的使用。此類方法也可用於檢測感興趣基因的核酸。Expressed mRNA concentrations can also be assessed using branched DNA (bDNA) assays or real-time PCR (qPCR). The use of this PCR method is described and exemplified in the examples provided in this article. Such methods can also be used to detect nucleic acids for genes of interest.
此外,透過表現 Grik2基因產生的 GluK2 蛋白質濃度可使用本領域已知用於測量蛋白質濃度的任何方法來確定。此類方法包括,例如電泳、毛細管電泳、高效液相層析法 (HPLC)、薄層層析法 (TLC)、超擴散層析法、流體或凝膠沉澱素反應、吸收光譜、比色測定、分光光度測定法、流式細胞分析技術、免疫擴散 (單或雙)、免疫電泳、西方點墨法、放射免疫測定法 (RIA)、酵素結合免疫吸附測定法 (ELISA)、免疫螢光測定法、電化學發光測定法等。此類測定法也可用於檢測蛋白質,表示感興趣基因產生之蛋白質的存在或複製。此外,上述測定法可用於報告導致蛋白質功能恢復或變更之感興趣 mRNA 序列的變化,從而為受試者提供治療效果及益處、治療受試者的病症,及/或減少受試者疾病的症狀。 Furthermore, the concentration of GluK2 protein produced by expression of the Grik2 gene can be determined using any method known in the art for measuring protein concentration. Such methods include, for example, electrophoresis, capillary electrophoresis, high performance liquid chromatography (HPLC), thin layer chromatography (TLC), superdiffusion chromatography, fluid or gel precipitin reactions, absorption spectroscopy, colorimetric assays , Spectrophotometry, flow cytometry, immunodiffusion (single or double), immunoelectrophoresis, Western blotting, radioimmunoassay (RIA), enzyme-binding immunosorbent assay (ELISA), immunofluorescence assay method, electrochemiluminescence assay, etc. Such assays can also be used to detect proteins indicating the presence or duplication of proteins produced by the gene of interest. In addition, the above-described assays can be used to report changes in the mRNA sequence of interest that result in restoration or alteration of protein function, thereby providing therapeutic effects and benefits to the subject, treating the subject's condition, and/or reducing the symptoms of the subject's disease. .
因此,上述用於測量 Grik2mRNA 或 GluK2 蛋白質表現的測定法可用於鑑定需要治療性治療的受試者 (例如患有癲癇的受試者,諸如 TLE),使用一種或多種本文揭露的抑制性 RNA 試劑 (例如,表 2 中描述的任何一種抑制性 RNA 試劑) 或編碼相同的核酸載體治療。例如,鑑定為患有 TLE 的患者可能在大腦一個半球的顳葉內表現出致癲癇病灶,導致無法控制的 (例如治療抵抗性、例如慢性) 癲癇發作。如本文所討論的,此類致癲癇病灶可能由例如復發性齒狀顆粒細胞苔狀纖維的異常生長及由所述苔狀纖維形成之復發性突觸處 Grik2的異常 (即增加的) 表現引起。使用上述測定法,可以確定受試者是否會受益於使用一種或多種本文揭露的 Grik2抑制性 RNA 試劑的治療,例如,透過對從致癲癇半球的海馬迴及健康半球的相同區域收集的腦組織進行小型活體組織切片。顯示相較於未受影響半球的表現濃度,致癲癇半球表現出更高的 (例如,至少 5%、10%、15%、20%、25%、30%、35%、40%、45%、50%、55%、60%、65%、70%、75%、80%、85%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更高 (例如 100%)) Grik2mRNA 或 GluK2 蛋白質表現濃度,將表示患者可能受益於使用本文揭露之方法及組成物的治療。如果患有 TLE 的受試者在兩個大腦半球均出現致癲癇病灶,則可以使用上述分析法,比較從受 TLE 影響之受試者的一個或多個半球取得的海馬迴組織與健康對照受試者的相同半球取得的海馬組織之間的 Grik2mRNA 或 GluK2 蛋白質濃度 (例如,來自沒有 TLE 受試者的死後組織)。顯示相較於健康受試者之相同半球的表現濃度,受 TLE 影響之受試者的致癲癇半球表現出更高的 (例如,至少 5%、10%、15%、20%、25%、30%、35%、40%、45%、50%、55%、60%、65%、70%、75%、80%、85%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如 100%)) Grik2mRNA 或 GluK2 蛋白質表現濃度,將表示受 TLE 影響的受試者將受益於使用本揭露之組成物及方法的治療。懷疑需要治療的受試者神經細胞中的 Grik2mRNA 濃度或 GluK2 蛋白質濃度,也可以與已知表示疾病狀態的這些分析物之標準或參考濃度進行比較。 Accordingly, the above-described assays for measuring Grik2 mRNA or GluK2 protein expression can be used to identify subjects in need of therapeutic treatment (e.g., subjects with epilepsy, such as TLE) using one or more inhibitory RNAs disclosed herein reagent (eg, any of the inhibitory RNA reagents described in Table 2) or a nucleic acid vector encoding the same treatment. For example, a patient identified as having TLE may exhibit epileptogenic lesions within the temporal lobes of one hemisphere of the brain, resulting in uncontrollable (eg, treatment-resistant, eg, chronic) seizures. As discussed herein, such epileptogenic lesions may be caused by, for example, abnormal growth of recurrent dentate granule cell mossy fibers and aberrant (i.e., increased) expression of Grik2 at recurrent synapses formed by such mossy fibers. . Using the assays described above, it can be determined whether a subject would benefit from treatment with one or more Grik2 inhibitory RNA agents disclosed herein, for example, by examining brain tissue collected from the hippocampus of the epileptogenic hemisphere and the same region of the healthy hemisphere. Perform small biopsies. Demonstrate that the epileptogenic hemisphere exhibits higher concentrations (e.g., at least 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%) than the unaffected hemisphere. ,50%,55%,60%,65%,70%,75%,80%,85%,90%,91%,92%,93%,94%,95%,96%,97%,98 %, 99% or higher (e.g., 100%)) Grik2 mRNA or GluK2 protein expression concentrations would indicate that the patient may benefit from treatment using the methods and compositions disclosed herein. If a subject with TLE develops epileptogenic lesions in both cerebral hemispheres, the analysis described above can be used to compare hippocampal tissue obtained from one or more hemispheres of a subject affected by TLE with that of healthy controls. Grik2 mRNA or GluK2 protein concentrations between hippocampal tissues obtained from the same hemisphere of the subject (eg, postmortem tissue from subjects without TLE). Show that the epileptogenic hemisphere of subjects affected by TLE exhibits higher (e.g., at least 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94% , 95%, 96%, 97%, 98%, 99% or more (e.g., 100%)) Grik2 mRNA or GluK2 protein expression concentrations, would indicate that subjects affected by TLE would benefit from use of the compositions of the present disclosure and methods of treatment. Grik2 mRNA concentrations or GluK2 protein concentrations in neuronal cells of subjects suspected of needing treatment may also be compared to standard or reference concentrations of these analytes known to be indicative of disease states.
此外,上述測定法可用於確定受試者 (例如患有癲癇症,諸如 TLE) 是否對使用本文揭露之組成物及方法的治療有反應。例如,如上所述,使用本文揭露的組成物及方法治療前,可透過小型活體組織切片從受 TLE 影響的受試者獲得來自致癲癇性大腦半球的海馬迴腦組織,以及可使用上述測定法評估 Grik2mRNA 或 GluK2 蛋白質的表現。然後可根據本文揭露之方法及組成物對受試者投藥治療。伴隨使用本揭露之方法及組成物治療患者恢復後 (例如,治療後 1、5、10、15、30、60、90 天或更多天),可在治療前評估的相同大腦區域進行第二次活體組織切片,並可再次評估 Grik2mRNA 或 GluK2 蛋白質的濃度。顯示受 TLE 影響的受試者表現出較低的 (例如,至少 5%、10%、15%、20%、25%、30%、35%、40%、45%、50%、55%、60%、65%、70%、75%、80%、85%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99% 或更多 (例如 100%)) Grik2mRNA 或 GluK2 蛋白質的表現濃度,將表示受試者對治療有反應。或者,可以將 Grik2mRNA 或 GluK2 蛋白質濃度與來自一名或多名健康對照受試者的相同表現進行比較。顯示治療後受 TLE 影響患者的 Grik2mRNA 或 GluK2 蛋白質濃度與一名或多名健康對照受試者的濃度在統計學上無法區分,將表示患者對治療有反應。接受治療受試者神經細胞中的 Grik2mRNA 濃度或 GluK2 蛋白質濃度,也可與這些分析物的標準或參考濃度進行比較,這些分析物已知表示沒有疾病狀態。 治療方法 Additionally, the assays described above can be used to determine whether a subject (eg, suffering from an epilepsy disorder, such as TLE) responds to treatment using the compositions and methods disclosed herein. For example, as described above, hippocampal brain tissue from the epileptogenic cerebral hemisphere can be obtained via small biopsies from subjects affected by TLE prior to treatment with the compositions and methods disclosed herein, and the assays described above can be used. Assess the performance of Grik2 mRNA or GluK2 protein. The subject can then be administered medication and treatment according to the methods and compositions disclosed herein. After the patient recovers from treatment with the methods and compositions of the present disclosure (e.g., 1, 5, 10, 15, 30, 60, 90, or more days after treatment), a second test can be performed on the same brain region assessed prior to treatment. Subbiopsies are taken and the concentration of Grik2 mRNA or GluK2 protein can be assessed again. Subjects shown to be affected by TLE exhibit lower (e.g., at least 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more (e.g. 100%)) The expressed concentration of Grik2 mRNA or GluK2 protein will indicate that the subject is responsive to treatment. Alternatively, Grik2 mRNA or GluK2 protein concentrations can be compared to the same performance from one or more healthy control subjects. Showing that Grik2 mRNA or GluK2 protein concentrations in a TLE-affected patient after treatment are statistically indistinguishable from those in one or more healthy control subjects would indicate that the patient is responding to treatment. Grik2 mRNA concentrations or GluK2 protein concentrations in the neural cells of treated subjects can also be compared to standard or reference concentrations of these analytes, which are known to be indicative of the absence of disease states. Treatment
可以使用本文描述的組成物及方法治療患有癲癇 (例如 TLE) 的受試者。組成物 (例如,含有抑制性 RNA 試劑的組成物或含有相同的載體) 可作為預防性治療投藥予有需要的受試者 (例如,診斷為患有癲癇或有患癲癇風險的受試者 (例如 TLE)。處於發展癲癇風險中的受試者可能表現出癲癇的早期症狀,或在投藥治療時可能還沒有症狀。Subjects suffering from epilepsy (e.g., TLE) can be treated using the compositions and methods described herein. The composition (e.g., a composition containing an inhibitory RNA agent or containing the same carrier) can be administered as a prophylactic treatment to a subject in need thereof (e.g., a subject diagnosed with or at risk for epilepsy (e.g., TLE). Subjects at risk of developing epilepsy may exhibit early symptoms of epilepsy or may not yet have symptoms at the time of treatment.
投藥途徑Route of administration
可使用標準方法將本文揭露的組成物投藥於受試者 (例如,鑑定為患有 TLE 的受試者)。例如,本文揭露的組成物可透過多種不同途徑中的任一種途徑進行投藥,包括例如全身投藥。全身投藥的非限制性實例包括腸內 (例如口服) 或非口服 (例如靜脈內、動脈內、經黏膜、腹膜內、表皮、黏膜內 (例如鼻內或舌下)、肌內或皮膚滲透投藥。其他投藥途徑可包括皮內、皮下及經皮注射。The compositions disclosed herein may be administered to a subject (e.g., a subject identified as having TLE) using standard methods. For example, the compositions disclosed herein may be administered by any of a variety of different routes, including, for example, systemic administration. Non-limiting examples of systemic administration include enteral (e.g., oral) or parenteral (e.g., intravenous, intraarterial, transmucosal, intraperitoneal, epidermal, intramucosal (e.g., intranasal or sublingual), intramuscular, or transcutaneous administration .Other routes of administration may include intradermal, subcutaneous and transdermal injection.
本文揭露的組成物也可使用適合局部傳送抑制性 RNA 試劑或編碼相同之核酸載體的方法來進行投藥。局部投藥的非限制性實例包括表皮 (例如局部)、關節內及吸入途徑。尤其,本揭露的組成物可局部投藥於受試者的大腦組織 (例如神經細胞,諸如神經元及/或星狀細胞)。The compositions disclosed herein may also be administered using methods suitable for local delivery of inhibitory RNA agents or nucleic acid vectors encoding the same. Non-limiting examples of topical administration include epidermal (e.g., topical), intra-articular, and inhalation routes. In particular, the compositions of the present disclosure can be administered topically to the brain tissue (e.g., nerve cells, such as neurons and/or stellate cells) of a subject.
尤其,可將抑制性 RNA 試劑及編碼相同的核酸載體局部投藥於受試者的大腦組織,諸如確定表現出增加癲癇樣活動的大腦組織。對大腦的局部投藥通常包括適合於將抑制性 RNA 試劑或編碼相同的核酸載體傳送至大腦細胞 (例如神經細胞) 的任何方法,使得選定的、突觸連接之細胞群的至少一部分細胞與組成物接觸。可將載體傳送至 CNS 的任何細胞,包括神經元、星狀細胞或兩者。通常,將載體傳送至 CNS 的細胞,包括例如脊髓、腦幹 (髓質、腦橋及中腦)、小腦、間腦 (例如丘腦及下視丘)、端腦 (紋狀體、腦皮質 (例如枕葉、顳葉、頂葉或額葉中的皮質區域) 或其組合,或其中任何合適的細胞亞群。更多傳送部位包括紅核、杏仁核、內嗅皮質及丘腦腹外側核或前核中的神經元。In particular, inhibitory RNA agents and nucleic acid vectors encoding the same can be administered locally to brain tissue in a subject, such as brain tissue determined to exhibit increased epileptiform activity. Local administration to the brain generally involves any method suitable for delivering an inhibitory RNA agent or a nucleic acid vector encoding the same to brain cells (e.g., nerve cells) such that at least a portion of the cells and components of a selected, synaptically connected cell population get in touch with. Vectors can be delivered to any cell in the CNS, including neurons, stellate cells, or both. Typically, vectors are delivered to cells of the CNS, including, for example, the spinal cord, brainstem (medulla, pons, and midbrain), cerebellum, diencephalon (eg, thalamus and hypothalamus), telencephalon (eg, striatum, cerebral cortex (eg, striatum) cortical areas in the occipital, temporal, parietal, or frontal lobes) or combinations thereof, or any suitable cell subpopulation therein. Further transmission sites include the red nucleus, amygdala, entorhinal cortex, and ventrolateral thalamus Neurons in the nucleus or anterior nucleus.
本揭露的載體可透過立體定位注射或顯微注射的方式直接傳送至 CNS 的實質或腦室中。在具體實例中,本揭露的載體可直接傳送至受試者大腦中的一個或多個癲癇病灶。例如,可透過直接向異源皮層 (例如海馬迴) 或新皮質 (例如額葉) 的一個或兩個半球進行立體定位注射,向受試者投藥本揭露的載體。在具體實例中,透過直接向海馬迴的一個或兩個半球進行立體定位注射,向受試者投藥本揭露的載體。或者,本揭露的載體可透過靜脈內注射投藥,例如在對 CNS 組織表現出向性之載體的情況下,包括但不限於 AAV5、AAV9 或 AAVrh10。The vectors of the present disclosure can be delivered directly into the parenchyma of the CNS or the brain ventricles via stereotaxic injection or microinjection. In specific examples, vectors of the present disclosure can be delivered directly to one or more epileptic lesions in the subject's brain. For example, vectors of the present disclosure may be administered to a subject via stereotactic injection directly into one or both hemispheres of the heterologous cortex (e.g., hippocampus) or neocortex (e.g., frontal lobes). In specific examples, a vector of the present disclosure is administered to a subject via stereotaxic injection directly into one or both hemispheres of the hippocampus. Alternatively, vectors of the present disclosure may be administered via intravenous injection, such as in the case of vectors that exhibit tropism for CNS tissue, including but not limited to AAV5, AAV9, or AAVrh10.
若要將本揭露的載體具體傳送至特定區域及特定的 CNS 細胞群,可透過立體定位顯微注射來投藥載體。例如,受試者可能有一個透過手術固定到位的立體定位框架底座 (旋入頭骨)。使用高解析度 MRI 對具有立體定位框架底座 (例如,具有基準標記的 MRI 相容立體定位框架底座) 的大腦進行成像。然後將 MRI 影像傳輸至執行立體定位軟體的電腦。使用一系列冠狀、矢狀及軸向影像,來確定用於將本揭露的組成物注射至大腦中的插管或注射針的目標注射部位及軌跡。該軟體直接將軌跡轉換為適合立體定位框架的三維坐標。在進入部位上方鑽孔,並將注射針植入特定深度放置立體定位裝置。可將組成物 (諸如本文揭露的組成物) 注射至目標部位。在組成物包括整合載體而非產生病毒顆粒的情況下,載體的傳播較小並且主要是為從注射部位被動擴散的功能。擴散程度可透過調節載體與流體載體的比率來控制。To specifically deliver the vectors of the present disclosure to specific regions and specific CNS cell populations, the vectors can be administered via stereotaxic microinjection. For example, the subject may have a stereotaxic frame base (screwed into the skull) that is surgically fixed in place. Use high-resolution MRI to image the brain with a stereotaxic frame base (e.g., an MRI-compatible stereotaxic frame base with fiducial markers). The MRI images are then transferred to a computer running stereotaxic software. A series of coronal, sagittal and axial images are used to determine the target injection site and trajectory of a cannula or injection needle used to inject compositions of the present disclosure into the brain. The software directly converts trajectories into three-dimensional coordinates suitable for the stereotaxic frame. A stereotaxic device is placed by drilling a hole above the access site and inserting the injection needle to a specific depth. Compositions, such as those disclosed herein, can be injected into the target site. In cases where the composition includes an integrated vector rather than the production of viral particles, the spread of the vector is minor and is primarily a function of passive diffusion from the injection site. The degree of diffusion can be controlled by adjusting the ratio of carrier to fluid carrier.
額外的投藥途徑也可包括直接可視化下局部載體的應用,例如淺層皮質的應用或其他非立體定位的應用。載體可鞘內 (例如,直接進入大池)、腦室內 (例如,使用腦室投藥 (ICV) 注射) 或透過靜脈內注射來傳送。Additional routes of administration may also include the application of localized vectors under direct visualization, such as superficial cortical applications or other non-stereotaxic applications. The vector can be delivered intrathecally (e.g., directly into the cisterna magna), intracerebroventricularly (e.g., using intracerebroventricular (ICV) injection), or by intravenous injection.
在一實例中,本揭露的方法包括透過立體定位注射進行腦內或腦室投藥。然而,也可根據本揭露修改其他已知的傳送方法。例如,為了使組成物更廣泛分佈在整個 CNS 中,可將其注射至腦脊隨液中,例如透過腰椎穿刺。若要將組成物引導至周圍神經系統,可將其注入脊髓、一個或多個周圍神經節,或感興趣身體部位的皮下 (皮下或肌內)。在某些情況下,組成物可透過血管內途徑投藥。例如,在血腦屏障受到干擾或未受到干擾的情況下,組成物可動脈內 (頸動脈) 投藥。此外,為了更全面傳送,可透過輸注包括甘露醇的高滲壓溶液完成血腦屏障「開啟」期間投藥組成物。In one example, the methods of the present disclosure include intracerebral or intracerebroventricular administration via stereotaxic injection. However, other known delivery methods may also be modified in accordance with the present disclosure. For example, in order to distribute a composition more widely throughout the CNS, it can be injected into the cerebrospinal fluid, for example via lumbar puncture. To direct the composition to the peripheral nervous system, it can be injected into the spinal cord, one or more peripheral ganglia, or subcutaneously (subcutaneously or intramuscularly) at the body site of interest. In some cases, the compositions may be administered via the intravascular route. For example, the compositions can be administered intraarterially (carotid artery) with or without disruption of the blood-brain barrier. In addition, for more comprehensive delivery, the composition can be administered during the "opening" of the blood-brain barrier by infusion of a hypertonic solution including mannitol.
在任何特定情況下,最合適的投藥途徑將取決於投藥的特定組成物、受試者、所治療的特定癲癇、醫藥配製方法、投藥方法 (例如,投藥時間及投藥途徑)、受試者的年齡、體重、性別、所治療疾病的嚴重程度、受試者的飲食及受試者的排泄率。The most appropriate route of administration in any particular case will depend on the specific composition of the drug administered, the subject, the specific epilepsy being treated, the method of pharmaceutical formulation, the method of administration (e.g., time and route of administration), the subject's Age, weight, sex, severity of disease being treated, subject's diet, and subject's excretion rate.
聯合療法combination therapy
可將本文揭露的組成物投藥於有此需求的受試者 (例如人類受試者),以與一種或多種額外的治療方式 (例如,1、2、3 或更多其他治療方式) 組合治療癲癇,包括其他治療試劑或物理介入 (例如,復健治療或手術介入)。兩種或更多種試劑可同時投藥 (例如,所有試劑的投藥發生在 15 分鐘、10 分鐘、5 分鐘、2 分鐘或更短時間內)。這些試劑也可透過複合配方同時投藥。也可依次投藥兩種或更多種試劑,使得兩種或更多種試劑的作用重疊,並且其組合的效應使得症狀緩解,或與疾病相關的其他參數大於單獨使用一種藥劑或治療或在沒有另一種藥劑或治療情況下觀察到的參數。兩種或多種的治療效果可以是部分累加、完全累加或大於累加 (例如協同作用)。可透過任何合適的途徑,包括但不限於口服途徑、靜脈內途徑、肌內途徑、局部途徑及透過黏膜組織直接吸收,執行依次或大體上同時投藥每種治療試劑。治療試劑可透過相同途徑或不同途徑投藥。例如,組合的第一治療試劑可透過靜脈內注射投藥,而組合的第二治療試劑可在化合物滲入的微匣中局部投藥。在第二治療劑之前或之後最多 1 小時、最多 2 小時、最多 3 小時、最多 4 小時、最多 5 小時、最多 6 小時、最多 7 小時、最多 8 小時、最多 9 小時、最多 10 小時、最多 11 小時、最多 12 小時、最多 13 小時、14 小時、最多 16 小時、最多 17 小時、最多 18 小時、最多 19 小時、最多 20 小時、最多 21 小時、最多 22 小時、最多 23 小時至 24 小時或最多 1-7、1-14、1-21 或 1-30 天,第一治療試劑可以立即投藥。The compositions disclosed herein can be administered to a subject in need thereof (e.g., a human subject) in combination with one or more additional treatment modalities (e.g., 1, 2, 3 or more other treatment modalities). Epilepsy, including other therapeutic agents or physical intervention (e.g., rehabilitation therapy or surgical intervention). Two or more agents can be administered simultaneously (e.g., administration of all agents occurs within 15 minutes, 10 minutes, 5 minutes, 2 minutes, or less). These agents can also be administered simultaneously through combined formulations. Two or more agents may also be administered sequentially, such that the effects of the two or more agents overlap and the combined effect results in relief of symptoms, or other parameters associated with the disease, that is greater than either agent or treatment alone or in the absence of Parameters observed with another agent or treatment. The effects of two or more treatments may be partially additive, fully additive, or greater than additive (e.g., synergistic). Administration of each therapeutic agent may be performed sequentially or substantially simultaneously by any suitable route, including, but not limited to, oral, intravenous, intramuscular, topical, and direct absorption through mucosal tissue. The therapeutic agents can be administered by the same route or by different routes. For example, a first therapeutic agent of the combination can be administered by intravenous injection, while a second therapeutic agent of the combination can be administered topically in a microcartridge into which the compounds are infiltrated. Up to 1 hour, up to 2 hours, up to 3 hours, up to 4 hours, up to 5 hours, up to 6 hours, up to 7 hours, up to 8 hours, up to 9 hours, up to 10 hours, up to 11 hours before or after the second therapeutic agent hours, up to 12 hours, up to 13 hours, 14 hours, up to 16 hours, up to 17 hours, up to 18 hours, up to 19 hours, up to 20 hours, up to 21 hours, up to 22 hours, up to 23 hours to 24 hours, or up to 1 -7, 1-14, 1-21 or 1-30 days before the first therapeutic agent can be administered immediately.
在受試者診斷為患有癲癇或處於發展癲癇 (例如 TLE) 風險中的情況下,第二治療試劑可包括一種或多種抗癲癇藥物 (AED),包括但不限於丙戊酸、拉莫三嗪、乙琥胺、托吡酯、拉考沙胺、左乙拉西坦、氯巴占、司替戊醇、苯二氮平類、苯妥英、卡馬西平、乙苯嘧啶二酮、苯巴比妥、加巴噴丁、普瑞巴林、噻加賓、唑尼沙胺、非氨酯及/或氨己烯酸。在某些情況下,第二治療方式可為手術介入,諸如使用本領域熟知的方法,諸如放射手術 (例如伽瑪刀或雷射消融) 切除致癲癇腦區 (例如顳葉切除術 )。可與本揭露的方法及組成物一起投藥的其他治療方式,包括迷走神經刺激、深度部腦刺激、跨顱磁刺激及生酮飲食。In cases where the subject is diagnosed with epilepsy or is at risk of developing epilepsy (e.g., TLE), the second therapeutic agent may include one or more antiepileptic drugs (AEDs), including but not limited to valproic acid, lamotrigine , ethosuximide, topiramate, lacosamide, levetiracetam, clobazam, stiripentol, benzodiazepines, phenytoin, carbamazepine, pyrimidinedione, phenobarbital, Gabapentin, pregabalin, tiagabine, zonisamide, felbamate and/or vigabatrin. In some cases, the second treatment modality may be surgical intervention, such as removal of the epileptogenic brain region (eg, temporal lobectomy) using methods well known in the art, such as radiosurgery (eg, gamma knife or laser ablation). Other treatment modalities that may be administered with the methods and compositions of the present disclosure include vagus nerve stimulation, deep brain stimulation, transcranial magnetic stimulation, and ketogenic diet.
在具體實例中,可向受試者投藥免疫抑製劑,包括單獨皮質類固醇或他克莫司或雷帕黴素 (西羅莫司) 的方案,例如與黴酚酸組合或與皮質類固醇諸如腎上腺皮質酮及/或甲基培尼皮質醇組合。本領域熟知的其他免疫抑制方案可與本揭露的方法及組成物結合使用。此類免疫抑制治療可在投藥本文所述的抑制性核酸分子 (例如,抑製劑 RNA 試劑) 之前、之後或同時投藥。In specific examples, the subject may be administered an immunosuppressive agent, including a regimen of corticosteroids alone or tacrolimus or rapamycin (sirolimus), for example, in combination with mycophenolic acid or with a corticosteroid such as adrenaline. Corticosterone and/or methylpenic cortisol combination. Other immunosuppressive regimens well known in the art may be used in conjunction with the methods and compositions of the present disclosure. Such immunosuppressive treatments may be administered before, after, or concurrently with administration of inhibitory nucleic acid molecules (e.g., inhibitor RNA agents) described herein.
給藥Give medication
可以如本文所述進行治療的受試者是診斷為患有癲癇症或處於發生癲癇 (例如 TLE) 風險中的受試者。可使用本揭露的方法及組成物治療的受試者包括,例如,先前接受過一種或多種與癲癇治療相關之治療介入的受試者或先前沒有接受過癲癇治療之治療介入的受試者。Subjects who can be treated as described herein are subjects diagnosed with or at risk of developing epilepsy (e.g., TLE). Subjects who may be treated using the methods and compositions of the present disclosure include, for example, subjects who have previously received one or more therapeutic interventions related to the treatment of epilepsy or subjects who have not previously received a therapeutic intervention for the treatment of epilepsy.
本揭露的抑制性 RNA 試劑可有效致使下列一種或多種 (例如,2 種或多種、3 種或多種、4 種或多種) 情況的量及時間投藥:(a) 降低受試者細胞中 Grik2mRNA 及/或 GluK2 蛋白質的濃度,(b) 疾病發作延遲,(c) 受試者存活率增加,(d) 增加受試者自由生存的進展狀況,(e) GluK2 蛋白質功能的恢復或改變,(f) 降低發作復發的風險;(g) 減少 CNS 的興奮性毒性及相關的神經細胞死亡;(h) 恢復 CNS 受影響區域 (例如海馬迴) 的生理興奮-抑制平衡;及/或 (i) 減少一種或多種癲癇症狀 (例如,癲癇發作的頻率、持續時間或強度、虛弱、失神、突然意識混亂、理解困難或產生言語、認知受損、行動不便、暈眩或失去平衡或協調、麻痺及情緒失調)。 The inhibitory RNA agent of the present disclosure can be administered in an amount and at a time effective to cause one or more (e.g., 2 or more, 3 or more, 4 or more) of the following: (a) reducing Grik2 mRNA in the cells of the subject and/or concentration of GluK2 protein, (b) delay in disease onset, (c) increased subject survival, (d) increased progression of subject free survival, (e) restoration or alteration of GluK2 protein function, ( f) reduce the risk of seizure recurrence; (g) reduce CNS excitotoxicity and associated neuronal cell death; (h) restore physiological excitatory-inhibitory balance in affected areas of the CNS (e.g., hippocampus); and/or (i) Reduce one or more symptoms of epilepsy (e.g., frequency, duration, or intensity of seizures, weakness, absence, sudden confusion, difficulty understanding or producing speech, impaired cognition, difficulty moving, dizziness or loss of balance or coordination, paralysis, and Emotional disorders).
因此,本揭露與一種在有此需要的受試者中治療癲癇 (例如 TLE) 的方法有關,其中該方法包括投藥有效量的載體,該載體包括編碼抑制性 RNA (例如 ASO,諸如 siRNA、shRNA、miRNA 或 shmiRNA) 的抑制性多核苷酸,此多核苷酸特異結合至 Grik2mRNA 並抑制受試者 GluK2 蛋白質的表現。尤其,本發明提供了一種在有此需要的受試者中治療癲癇症的方法,包括向受試者投藥治療有效量之本文揭露的抑制性 RNA 試劑或編碼相同的核酸載體。 Accordingly, the present disclosure relates to a method of treating epilepsy (e.g., TLE) in a subject in need thereof, wherein the method includes administering an effective amount of a vector comprising an inhibitory RNA (e.g., ASO, such as siRNA, shRNA , miRNA or shmiRNA) inhibitory polynucleotide, this polynucleotide specifically binds to Grik2 mRNA and inhibits the expression of GluK2 protein in the subject. In particular, the present invention provides a method of treating epilepsy in a subject in need thereof, comprising administering to the subject a therapeutically effective amount of an inhibitory RNA agent disclosed herein or a nucleic acid vector encoding the same.
使用本揭露方法及組成物治療的癲癇可為 TLE (例如 mTLE 或 lTLE)、良性 Rolandic 癲癇、額葉癲癇、嬰兒點頭性痙攣症、青少年肌陣攣性癲癇、青少年失神性癲癇、兒童失神性癲癇 (pyknolepsy)、熱水性癲癇、Lennox-Gastaut 症候群、Landau-Kleffner 症候群、Dravet 症候群、進行性肌陣攣性癲癇、反射性癲癇、Rasmussen 症候群、邊緣性癲癇、癲癇重積狀態、腹部性癲癇、大規模雙側肌陣攣、月經性癲癇、Jacksonian 癲癇症、Lafora 症及光敏性癲癇。例如,可能診斷受試者患有 TLE (例如 mTLE 或 lTLE),諸如以局部或全身性癲癇發作為特徵的 TLE。在某些情況下,癲癇可為慢性癲癇,諸如難治性癲癇 (即耐藥性癲癇,諸如耐藥性 TLE)。Epilepsy treated using the disclosed methods and compositions may be TLE (e.g., mTLE or lTLE), benign Rolandic epilepsy, frontal lobe epilepsy, infantile nodding spasms, juvenile myoclonic epilepsy, juvenile absence epilepsy, and childhood absence epilepsy (pyknolepsy), hot water epilepsy, Lennox-Gastaut syndrome, Landau-Kleffner syndrome, Dravet syndrome, progressive myoclonic epilepsy, reflex epilepsy, Rasmussen syndrome, borderline epilepsy, epileptic status epilepticus, abdominal epilepsy, Massive bilateral myoclonus, catamenial epilepsy, Jacksonian epilepsy, Lafora syndrome, and photosensitive epilepsy. For example, a subject may be diagnosed with TLE (eg, mTLE or lTLE), such as TLE characterized by focal or generalized seizures. In some cases, epilepsy can be chronic, such as refractory epilepsy (i.e., drug-resistant epilepsy, such as drug-resistant TLE).
如本文所討論,為了治療癲癇及改善癲癇發作及癲癇樣放電的症狀,有用的多核苷酸可透過編碼功能性 RNA (例如 siRNA、shRNA、miRNA 或 shmiRNA) 的載體來部署,其抑制 Grik2mRNA 的表現。 As discussed herein, to treat epilepsy and ameliorate the symptoms of epileptic seizures and epileptiform discharges, useful polynucleotides can be deployed through vectors encoding functional RNA (e.g., siRNA, shRNA, miRNA, or shmiRNA) that inhibit the expression of Grik2 mRNA Performance.
本揭露的組成物可以本領域技術人員確定合適的量投藥。在某些情況下,rAAV 以每個受試者 10 5、10 6、10 7、10 8、10 9、10 10、10 11、10 12、10 13、10 14或 10 15基因體複製數量 (GC) 的劑量投藥。在某些實施例中,rAAV 以每公斤 (受試者的總重量) 10 5、10 6、10 7、10 8、10 9、10 10、10 11、10 12、10 13或 10 14GC 的劑量投藥。 The compositions of the present disclosure may be administered in an amount determined to be appropriate by one skilled in the art. In some cases, rAAV was expressed at 10 5 , 10 6 , 10 7 , 10 8 , 10 9 , 10 10 , 10 11 , 10 12 , 10 13 , 10 14 or 10 15 genome copy numbers per subject ( GC) dose administration. In certain embodiments, rAAV is expressed at 10 5 , 10 6 , 10 7 , 10 8 , 10 9 , 10 10 , 10 11 , 10 12 , 10 13 , or 10 14 GC per kilogram (total weight of the subject) Dosage administration.
在某些情況下,投藥 1 x 10 12至 5 x 10 14GC。在某些情況下,將 1 x 10 12至 5 x 10 14GC 的固定劑量投藥於兒科患者或成人患者。 In some cases, dose 1 x 10 12 to 5 x 10 14 GC. In some cases, a fixed dose of 1 x 10 12 to 5 x 10 14 GC is administered to pediatric or adult patients.
在某些情況下,劑量是透過每克患者大腦質量投藥至患者腦脊液 (CSF) (例如鞘內注射、例如透過枕下穿刺或腰椎穿刺) 的 GC 數量來測量的。在某些情況下,以每克患者大腦質量 10 5、10 6、10 7、10 8、10 9、10 9、10 10、10 11、10 12、10 13、10 14或 10 15基因體複製數量投藥。在某些情況下,以每克患者大腦質量 1 × 10 5基因體複製數量投藥。在某些情況下,以每克患者大腦質量 1 × 10 6基因體複製數量投藥。在某些情況下,以每克患者大腦質量 1 × 10 7基因體複製數量投藥。在某些情況下,以每克患者大腦質量 1 × 10 8基因體複製數量投藥。在某些情況下,以每克患者大腦質量 1 × 10 9基因體複製數量投藥。在某些情況下,以每克患者大腦質量 1 × 10 10基因體複製數量投藥。在某些情況下,以每克患者大腦質量 5 × 10 10基因體複製數量投藥。在某些情況下,以每克患者大腦質量 1 x 10 9至 1 x 10 11基因體複製數量投藥。在某些情況下,以每克患者大腦質量 1 x 10 9至 5 x 10 10基因體複製數量投藥。在某些情況下,以每克患者大腦質量 2 x 10 9至 9 x 10 10基因體複製數量投藥。在某些情況下,以每克患者大腦質量 5 x 10 9至 1 x 10 11基因體複製數量投藥。在其他情況下,以每克患者大腦質量 1 x 10 10至 5 x 10 10基因體複製數量投藥。在其他實施例中,以每克患者大腦質量 1 x 10 10至 9 x 10 10基因體複製數量投藥。從 MRI 大腦容量測定中獲得患者 (受試者) 的大腦重量估計,該大腦容量轉換為大腦質量並用於計算精確的投藥劑量。也可以使用已發布的資料庫,以年齡範圍為基礎估計大腦重量。 In some cases, the dose is measured by the number of GCs administered per gram of the patient's brain mass into the patient's cerebrospinal fluid (CSF) (eg, intrathecal injection, eg, via suboccipital puncture or lumbar puncture). In some cases, 10 5 , 10 6 , 10 7 , 10 8 , 10 9 , 10 9 , 10 10 , 10 11 , 10 12 , 10 13 , 10 14 or 10 15 genome copies per gram of patient brain mass Quantity dose. In some cases, the dose was administered at 1 × 10 5 genome copies per gram of patient brain mass. In some cases, the dose was administered at 1 × 10 6 genome copies per gram of patient brain mass. In some cases, the dose was administered at 1 × 10 7 genome copies per gram of patient brain mass. In some cases, the dose was administered at 1 × 108 genome copies per gram of patient brain mass. In some cases, the dose was administered at 1 × 109 genome copies per gram of patient brain mass. In some cases, doses were administered at 1 × 10 10 genome copies per gram of patient brain mass. In some cases, doses were administered at 5 × 10 10 genome copies per gram of patient brain mass. In some cases, doses are administered at 1 x 109 to 1 x 1011 genome copies per gram of patient brain mass. In some cases, doses are administered at 1 x 10 9 to 5 x 10 10 genome copies per gram of patient brain mass. In some cases, doses were administered at 2 x 10 9 to 9 x 10 10 genome copies per gram of patient brain mass. In some cases, doses were administered at 5 x 109 to 1 x 1011 gene copy number per gram of patient brain mass. In other cases, doses are administered at 1 x 10 10 to 5 x 10 10 genome copies per gram of patient brain mass. In other embodiments, the dose is administered at a genome copy number of 1 x 10 10 to 9 x 10 10 per gram of patient brain mass. An estimate of the patient's (subject's) brain weight is obtained from the MRI brain volume measurement, which is converted to brain mass and used to calculate the precise dosage. It is also possible to use published databases to estimate brain weight based on age ranges.
任選地,本揭露的試劑可作為適合傳送給受試者的醫藥可接受之組成物的一部分來投藥,如本文所述。本揭露的試劑以足夠提供所需劑量及/或引起治療有益效果的量包括在這些組成物中,如本領域技術人員可容易確定。Optionally, the agents of the present disclosure may be administered as part of a pharmaceutically acceptable composition suitable for delivery to a subject, as described herein. The agents of the present disclosure are included in these compositions in amounts sufficient to provide the desired dosage and/or cause a therapeutic benefit, as can be readily determined by one skilled in the art.
本文描述的揭露組成物可以一定量 (例如有效量) 及足夠治療受試者或實現上述結果之一 (例如,減輕受試者一種或多種疾病症狀) 的時間進行投藥。可一次或多次投藥本揭露的組成物。本揭露的組成物可每天投藥一次、每天投藥兩次、每天投藥三次、每兩天投藥一次、每週投藥一次、每週投藥兩次、每週投藥三次、每兩週投藥一次、每月投藥一次、每兩個月投藥一次、每年投藥兩次或每年投藥一次。治療可以是不連續的 (例如注射) 或連續的 (例如透過植入物或輸注泵進行治療)。取決於治療使用的組成物及投藥途徑,可以在投藥本揭露的組成物後 1 週、2 週、1 個月、2 個月、3 個月、4 個月、5 個月、6 個月或更長時間評估受試者的治療功效。本文揭露了評估治療功效的方法 (參見例如「醫藥用途」)。根據評估的結果,可繼續或停止治療、可變更治療頻率或劑量,或者可使用不同揭露的組成物治療患者。受試者可以接受一段不連續的時間 (例如 1、2、3、4、5、6、7、8、9、10、11 或 12 個月) 或直到疾病或病症得到緩解的治療,或治療可能是慢性的,這取決於所治療疾病或病症的嚴重程度及性質。例如,診斷患有 TLE 並使用本文揭露的組成物治療的受試者,如果起初或後續幾輪治療沒有產生治療益處 (例如,本文揭露的任何一種症狀減輕或 Grik2mRNA 或受試者受影響的大腦區域 GluK2 蛋白質濃度的降低),可以給予一種或多種 (例如 1、2、3、4、5、6、7、8、9、10 或更多) 額外的治療。 套組 The disclosed compositions described herein can be administered in an amount (eg, an effective amount) and for a time sufficient to treat a subject or achieve one of the results described above (eg, alleviate one or more disease symptoms in the subject). The compositions of the present disclosure may be administered in one or more times. The disclosed composition can be administered once a day, twice a day, three times a day, once every two days, once a week, twice a week, three times a week, once every two weeks, or monthly. Once, every two months, twice a year, or once a year. Treatment may be discontinuous (eg, injection) or continuous (eg, treatment via implant or infusion pump). Depending on the composition used in the treatment and the route of administration, it can be 1 week, 2 weeks, 1 month, 2 months, 3 months, 4 months, 5 months, 6 months, or Assess treatment efficacy in subjects over a longer period of time. This article discloses methods for assessing the efficacy of treatments (see, for example, "Pharmaceutical Uses"). Depending on the results of the evaluation, treatment may be continued or discontinued, the frequency or dosage of treatment may be changed, or the patient may be treated with a different disclosed composition. Subjects may receive treatment, or treatment, for a discrete period of time (e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, or 12 months) or until remission of the disease or condition is achieved May be chronic, depending on the severity and nature of the disease or condition being treated. For example, a subject diagnosed with TLE and treated with a composition disclosed herein, if initial or subsequent rounds of treatment do not produce a therapeutic benefit (e.g., a reduction in any of the symptoms disclosed herein or Grik2 mRNA or the subject's affected decrease in GluK2 protein concentration in the brain region), one or more (e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 or more) additional treatments may be administered. set
本揭露也提供套組,此套組包括本文揭露的組成物,其抑制受試者 Grik2基因的表現 (例如,標靶 Grik2mRNA 的抑制性 RNA),用於預防或治療癲癇 (例如 TLE,諸如治療難治性 TLE)。套組可任選包括用於將組成物傳送至受試者的試劑或裝置。在其他實例中,套組可包括一個或多個無菌塗藥器,諸如注射器或針頭。此外,套組可任選包括其他試劑,例如麻醉劑或抗生素。該套組也可包括指導該套組的使用者 (諸如醫生) 執行本文揭露方法的藥品仿單。 實例 The present disclosure also provides a kit comprising a composition disclosed herein that inhibits expression of the Grik2 gene in a subject (e.g., inhibitory RNA targeting Grik2 mRNA) for preventing or treating epilepsy (e.g., TLE, such as Treatment-refractory TLE). The kit may optionally include an agent or device for delivering the composition to a subject. In other examples, the kit may include one or more sterile applicators, such as syringes or needles. In addition, the kit may optionally include other agents, such as anesthetics or antibiotics. The kit may also include instructions for a user of the kit (such as a physician) to perform the methods disclosed herein. Example
提出以下實例是為了向本領域的普通技術人員提供如何使用、製備及評估本文所述之組成物及方法的描述,並且旨在僅為本揭露的實例,而非旨在限制發明人認為是其揭露內容的範圍。 實例 1 :標靶 Grik2mRNA 的抑制性多核苷酸的設計與合成 The following examples are presented to provide those of ordinary skill in the art with a description of how to use, prepare, and evaluate the compositions and methods described herein, and are intended to be examples of the present disclosure only and are not intended to limit what the inventors believe to be theirs. Scope of disclosure. Example 1 : Design and synthesis of inhibitory polynucleotides targeting Grik2 mRNA
是以與人類 Grik2mRNA 的預測互補性為基礎設計 Grik2標靶 抑制性多核苷酸序列,例如 SEQ ID NO:164 的 Grik2mRNA 序列,並根據本領域已知的方法合成。抑制性多核苷酸含有主幹-環圈序列,該序列包括與 Grik2mRNA 區域特異雜交的反義引導股序列及與引導股本質上互補的有義隨從股序列。抗 Grik2主幹-環圈序列可轉染至人類神經母細胞瘤細胞株 SHSY5Y 或鼠類 N2A 神經細胞株中。可萃取總 RNA 並進行小 RNA 定序,以量化引導股及隨從股的濃度並識別 Drosha 及 Dicer 切割位點。若要測量 Grik2減弱功效,可將構建體與人類 Grik2cDNA 共轉染至 HEK293 細胞中,萃取 mRNA 並針對 Grik2mRNA 執行即時定量聚合酶連鎖反應 (RT-qPCR)。此外,可將合成的主幹-環圈 RNA 轉染至 SHSY5Y 細胞中,然後進行 mRNA 萃取及 Grik2 RT-qPCR。 實例 2 :透過投藥編碼一種或多種標靶 Grik2mRNA 的抑制性多核糖核酸的病毒載體,治療人類受試者的癲癇 The Grik2 target inhibitory polynucleotide sequence is designed based on the predicted complementarity with human Grik2 mRNA, such as the Grik2 mRNA sequence of SEQ ID NO: 164, and is synthesized according to methods known in the art. The inhibitory polynucleotide contains a backbone-loop sequence that includes an antisense leader sequence that specifically hybridizes to the Grik2 mRNA region and a sense follower sequence that is essentially complementary to the leader strand. The anti -Grik2 backbone-loop sequence can be transfected into the human neuroblastoma cell line SHSY5Y or the murine N2A neural cell line. Total RNA can be extracted and small RNA sequenced to quantify leader and follower strand concentrations and identify Drosha and Dicer cleavage sites. To measure Grik2 attenuation efficacy, the constructs were co-transfected with human Grik2 cDNA into HEK293 cells, the mRNA was extracted, and real-time quantitative polymerase chain reaction (RT-qPCR) was performed on Grik2 mRNA. In addition, synthetic backbone-loop RNA can be transfected into SHSY5Y cells, followed by mRNA extraction and Grik2 RT-qPCR. Example 2 : Treatment of epilepsy in human subjects by administration of viral vectors encoding inhibitory polyRNAs encoding one or more target Grik2 mRNAs
可使用本文描述的組成物治療診斷患有癲癇症 (例如 TLE,諸如 mTLE 或 lTLE) 的受試者,諸如人類受試者 (例如兒科或成人受試者),以減輕其中一種癲癇症狀,包括但不限於一種或多種 (例如 2 種或多種、3 種或多種、4 種或多種) 下列情況:(a) 發作復發的風險;(b) 減少 CNS 的興奮性毒性及相關的神經細胞死亡;(c) 恢復 CNS 系統受影響區域的生理興奮-抑制平衡;(d) 減少一種或多種癲癇症狀 (例如,癲癇發作的頻率、持續時間或強度、虛弱、失神、突然意識混亂、理解困難或產生言語、認知受損、行動不便、暈眩或失去平衡或協調、麻痺及情緒失調),以及 (e) 海馬迴齒狀顆粒細胞之復發性苔狀纖維的病理性生長。治療方法可任選包括在投藥前將受試者診斷或鑑定為使用本揭露之組成物治療的候選者。該組成物可包括標靶 Grik2mRNA 的抑制性多核苷酸 (例如,編碼本揭露之抑制性RNA序列的多核苷酸) 或含有編碼相同之多核苷酸 (例如 AAV9 載體) 的核酸載體 (例如病毒載體,諸如 AAV 載體,例如具有選自 AAV1、AAV2、AAV3、AAV4、AAV5、AAV6、AAV7、AAV8、AAV9、AAV10、AAV11、AAV12、AAV13、AAV14、AAV15、AAV16、AAV.rh8、AAV.rh10、AAV.rh20、AAV.rh39、AAV.Rh74、AAV.RHM4-1、AAV.hu37、AAV.Anc80、AAV.Anc80L65、AAV.7m8、AAV.PHP.B、AAV.PHP.eB、AAV2.5、AAV2tYF、AAV3B、AAV.LK03、AAV.HSC1、AAV.HSC2、AAV.HSC3、AAV.HSC4、AAV.HSC5、AAV.HSC6、AAV.HSC7、AAV.HSC8、AAV.HSC9、AAV.HSC10、AAV.HSC11、AAV.HSC12、AAV.HSC13、AAV.HSC14、AAV.HSC15 或 AAV.HSC16 之任一種血清型的 AAV 載體或慢病毒載體)。實例性抑制性多核苷酸與 SEQ ID NO:1-19、34-62、97-108、133-147、226-229 及 238-241 中的核酸序列任一者具有不少於 85% (例如,至少 85%、86%、87%、88%、89%、90%、91%、92%、93%、94%、95%、96% 、97%、98%、99% 或更多 (例如,100%)) 的序列同一性,或其可具有一個或多個 SEQ ID NO:1-19、34-62、97-108、133-147、226-229 及 238-241 的序列(也參見圖1B-1W、圖2B-2Q、圖3B-3L、圖4B-4F、圖5B-5E,及圖6A-6B 代表概念圖)。此外,病毒載體 (例如 AAV 載體) 可併入含有抑制性多核苷酸及促進多核苷酸異源表現之調節序列的表現匣,諸如啟動子序列 (參見表 11 及 12)。 Subjects diagnosed with epilepsy (e.g., TLE, such as mTLE or ITLE), such as human subjects (e.g., pediatric or adult subjects), may be treated using the compositions described herein to alleviate one of the symptoms of epilepsy, including But not limited to one or more (such as 2 or more, 3 or more, 4 or more) of the following conditions: (a) risk of seizure recurrence; (b) reduction of CNS excitotoxicity and related nerve cell death; (c) Restore the physiological excitatory-inhibitory balance in affected areas of the CNS system; (d) Reduce one or more symptoms of epilepsy (e.g., frequency, duration, or intensity of seizures, weakness, absence, sudden confusion, difficulty understanding, or production Impaired speech, cognition, mobility, dizziness or loss of balance or coordination, paralysis, and mood disorders), and (e) pathological growth of recurrent mossy fibers in the dentate granule cells of the hippocampus. Methods of treatment may optionally include diagnosing or identifying the subject as a candidate for treatment with the compositions of the present disclosure prior to administration. The composition may include an inhibitory polynucleotide that targets Grik2 mRNA (e.g., a polynucleotide encoding an inhibitory RNA sequence of the present disclosure) or a nucleic acid vector (e.g., a virus) containing the same polynucleotide (e.g., an AAV9 vector). Vectors, such as AAV vectors, for example, having a vector selected from the group consisting of AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, AAV12, AAV13, AAV14, AAV15, AAV16, AAV.rh8, AAV.rh10, AAV.rh20, AAV.rh39, AAV.Rh74, AAV.RHM4-1, AAV.hu37, AAV.Anc80, AAV.Anc80L65, AAV.7m8, AAV.PHP.B, AAV.PHP.eB, AAV2.5, AAV2tYF, AAV3B, AAV.LK03, AAV.HSC1, AAV.HSC2, AAV.HSC3, AAV.HSC4, AAV.HSC5, AAV.HSC6, AAV.HSC7, AAV.HSC8, AAV.HSC9, AAV.HSC10, AAV. AAV vector or lentiviral vector of any serotype of HSC11, AAV.HSC12, AAV.HSC13, AAV.HSC14, AAV.HSC15 or AAV.HSC16). Exemplary inhibitory polynucleotides have no less than 85% identity with any one of the nucleic acid sequences of SEQ ID NOs: 1-19, 34-62, 97-108, 133-147, 226-229 and 238-241 (e.g. , at least 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more ( For example, 100%))) sequence identity, or it may have one or more of the sequences of SEQ ID NOs: 1-19, 34-62, 97-108, 133-147, 226-229 and 238-241 (also See Figures 1B-1W, Figures 2B-2Q, Figures 3B-3L, Figures 4B-4F, Figures 5B-5E, and Figures 6A-6B for conceptual diagrams). Additionally, viral vectors (eg, AAV vectors) can incorporate expression cassettes containing inhibitory polynucleotides and regulatory sequences that promote heterologous expression of the polynucleotide, such as promoter sequences (see Tables 11 and 12).
可透過任何合適的方式向受試者投藥組成物,包括例如靜脈內、腹膜內、皮下或皮膚滲透投藥,或透過直接投藥至動物中樞神經系統的方式 (例如,立體定位、實質內、鞘內或腦室內注射)。組成物可以治療有效量投藥,諸如以每個受試者 10 5、10 6、10 7、10 8、10 9、10 10、10 11、10 12、10 13、10 14或 10 15基因體複製數量 (GC) 的劑量,以每公斤 (受試者的總重量) 10 5、10 6、10 7、10 8、10 9、10 10、10 11、10 12、10 13或 10 14GC 的劑量,以每克患者大腦質量 10 5、10 6、10 7、10 8、10 9、10 10、10 11、10 12、10 13、10 14或 10 15GC 投藥。從 MRI 大腦容量測定中獲得受試者的大腦重量估計,該大腦容量轉換為大腦質量並用於計算精確的投藥劑量。也可以使用已發布的資料庫,以年齡範圍為基礎估計大腦重量。試劑可以每兩個月投藥一次、每月投藥一次、每兩週投藥一次或至少每週投藥一次或更多次 (例如,每週 1、2、3、4、5、6 或 7 次或更多次)。組成物可與第二治療方式組合投藥,諸如第二治療試劑 (例如抗癲癇藥)、手術介入 (例如手術切除、放射手術、伽馬刀或激光消融)、迷走神經刺激、深度部腦刺激或跨顱磁刺激。 The compositions may be administered to the subject by any suitable means, including, for example, intravenous, intraperitoneal, subcutaneous, or transdermal administration, or by direct administration to the central nervous system of the animal (e.g., stereotaxic, intraparenchymal, intrathecal or intracerebroventricular injection). The composition may be administered in a therapeutically effective amount, such as 10 5 , 10 6 , 10 7 , 10 8 , 10 9 , 10 10 , 10 11 , 10 12 , 10 13 , 10 14 or 10 15 genome copies per subject Dosage in quantity (GC), dose per kilogram (total weight of subject) 10 5 , 10 6 , 10 7 , 10 8 , 10 9 , 10 10 , 10 11 , 10 12 , 10 13 or 10 14 GC , administered at 10 5 , 10 6 , 10 7 , 10 8 , 10 9 , 10 10 , 10 11 , 10 12 , 10 13 , 10 14 or 10 15 GC per gram of patient's brain mass. Subjects' brain weight estimates were obtained from MRI brain volume measurements, which were converted to brain mass and used to calculate precise drug doses. It is also possible to use published databases to estimate brain weight based on age ranges. The agent may be administered bimonthly, monthly, biweekly, or at least weekly or more (e.g., 1, 2, 3, 4, 5, 6, or 7 or more times per week). repeatedly). The composition may be administered in combination with a second therapeutic modality, such as a second therapeutic agent (e.g., an anti-epileptic drug), surgical intervention (e.g., surgical resection, radiosurgery, gamma knife or laser ablation), vagus nerve stimulation, deep brain stimulation, or transtranscriptional therapy. Magnetic cranial stimulation.
組成物可以足夠的量投藥於受試者,以減少下列一種或多種 (例如,2 種或多種、3 種或多種、4 種或多種) 症狀:(a) 發作復發的風險;(b) 減少 CNS 的興奮性毒性及相關的神經細胞死亡;(c) 恢復 CNS 受影響區域的生理興奮-抑制平衡;(d) 減少一種或多種癲癇症狀 (例如,癲癇發作的頻率、持續時間或強度、虛弱、失神、突然意識混亂、理解困難或產生言語、認知受損、行動不便、暈眩或失去平衡或協調、麻痺及情緒失調),以及 (e) 海馬迴齒狀顆粒細胞之復發性苔狀纖維的病理性生長 10% 或更多 (例如 10%、20%、30%、40%、50%、60%、70%、80%、90%、95% 或更多)。可使用標準方法評估上面列出的癲癇症狀,諸如神經檢查、腦波圖、腦磁圖、CT 掃描、PET 掃描、fMRI 掃描、攝像及視覺觀察。可比較投藥組成物之前及之後的癲癇症狀測量值以評估治療的功效。上述癲癇症狀減輕的發現表示該組成物已成功治療受試者的癲癇。The composition can be administered to a subject in an amount sufficient to reduce one or more (e.g., 2 or more, 3 or more, 4 or more) of the following symptoms: (a) the risk of recurrence of seizures; (b) reducing Excitotoxicity of the CNS and associated neuronal cell death; (c) Restoration of physiological excitatory-inhibitory balance in affected areas of the CNS; (d) Reduction of one or more symptoms of epilepsy (e.g., seizure frequency, duration, or intensity, weakness , absence of consciousness, sudden confusion, difficulty understanding or producing speech, impaired cognition, difficulty moving, dizziness or loss of balance or coordination, paralysis, and mood disorders), and (e) recurrent mossy fibers of hippocampal gyrus dentate granule cells Pathological growth of 10% or more (such as 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95% or more). Symptoms of epilepsy listed above can be evaluated using standard methods, such as neurological examination, electroencephalogram, magnetoencephalogram, CT scan, PET scan, fMRI scan, videography, and visual observation. Measurements of epilepsy symptoms before and after administration of the composition can be compared to evaluate the efficacy of the treatment. The above-mentioned finding of alleviation of epilepsy symptoms indicates that the composition has successfully treated the subject's epilepsy.
圖 1B-1W、圖 2B-2Q、圖 3B-3L、圖 4B-4F 黑色圓圈中的數字對應於本揭露的抗 Grik2構建體設計的不同基本原理。因此,每個數字指定的基本原理如下: ❶ RISC 組裝有利於具有 5' 端的 miRNA 股更容易磨損或從雙股螺旋中釋放 (Schwarz 等人, Cell115:199-208 (2003);Khvorova 等人, Cell115:209-16 (2003);以及 Medley 等人, Wiley Interdiscip.Rev. RNA12:e1627 (2021))。本文揭露的構建體有利於 RISC 透過使引導股 5' 端之鹼基配對不穩定 (引入 U-A 對、U-G 搖擺對或錯誤配對,或刪除一個 G-C 對) 的引導選擇。 ❷ RISC 組裝有利於具有 5' 端的 miRNA 股更容易磨損或從雙股螺旋中釋放。本文揭露的構建體不利於 RISC 透過使隨從股 5' 端引入 G-C 對來緊固隨從股 5' 端之鹼基配對的隨從選擇。 ❸小引導 RNA 的 5' 末端核苷酸固定在磷酸鹽結合袋狀 Argonaute (AGO) 蛋白質中,無法與其標靶 RNA 鹼基配對 (Medley 等人, Wiley Interdiscip.RNA12:e1627 (2021);Ma 等人, Nature434:666-70 (2005);Parker 等人, Nature434:663-6 (2005);及 Ghildiyal 等人, RNA16:43-56 (2010))。 ❹ 5'-U 是 AGO2 結合的首選核苷酸 (Seitz 等人, Silence2:4 (2011);Frank 等人, Nature465:818-22 (2010);De 等人, Mol.Cell50:344-55 (2013);及 Czech 等人, Nat. Rev. Genet.12:19-31 (2011))。將 U 作為引導股的第一 (5') 核苷酸引入,將 G 或 C 作為隨從股的第一 (5') 核苷酸引入可促進 AGO2 結合。 ❺ 在引導與其目標 mRNA 之間引入 3' 錯誤配對致使哺乳動物細胞中豐富的 mRNA 更有效沉默 (De 等人, Mol.Cell50:344-55 (2013);Bofill-De Ros Methods103:157-66 (2016);及 Amarzguioui 等人, Nucleic Acids Res.31:589-95 (2003))。雖然種子區 (引導核苷酸 2-8 (g2-g8)) 及引導股中間區的廣泛互補性對於 AGO2 調解的 mRNA 標靶切割至關重要,但不需要 3' 端的鹼基配對。實際上,位置 g18、g19、g20、g21 與標靶 mRNA 的錯誤配對減弱了引導 RNA 從 AGO2 的釋放,這是一種由標靶 mRNA 調節的卸載活動。 ❻ 引導股與隨從股之間種子區 (引導股核苷酸位置 2-8) 的錯誤配對促進 RISC 加載過程中隨從股的解旋,從而促進 RISC 成熟 (Ghildiyal 等人, RNA16:43-56 (2010);Tomari 等人, Cell130:299-308 (2007);Matranga 等人, Cell123:607-20 (2005);以及 Kawamata 等人, Nat. Struct.Mol.Biol.16:953-60 (2009))。本文揭露的構建體透過在引導股的種子區域引入錯誤配對來促進引導-RISC 複合物成熟,或透過在隨從股 (隨從股核苷酸位置 2-8) 的相對應區域將錯誤配對轉化為配對的核苷酸來減少或防止隨從-RISC 複合物成熟。 ❼ 引入 G-C 或 U-A 鹼基配對以替換主幹區及莖環區連接處的 U-G 搖擺,促進 Dicer 蛋白質切割 (Liu 等人, Cell173:1191-203 (2018 年))。 ❽ 在靠近主幹-環圈結構的側翼區 (即 Drosha 切割位點) 引入 G-C 鹼基配對有助於提高 Drosha 切割的精度。 ❾ 透過模仿 E-miR-124 的支架結構在主幹區引入配對或錯誤配對的鹼基對。 實例 3 :使用合成的抑制性多核苷酸之 Grik2mRNA 的 體外減弱功效 Figures 1B-1W, Figures 2B-2Q, Figures 3B-3L, Figures 4B-4F The numbers in black circles correspond to different rationales for the anti -Grik2 construct design of the present disclosure. Therefore, the rationale for each number assignment is as follows: ❶ RISC assembly favors miRNA strands with 5' ends that are more likely to fray or be released from the double helix (Schwarz et al., Cell 115:199-208 (2003); Khvorova et al. , Cell 115:209-16 (2003); and Medley et al., Wiley Interdiscip. Rev. RNA 12:e1627 (2021)). The construct disclosed herein facilitates RISC guide selection by destabilizing the base pairing at the 5' end of the guide strand (introducing a UA pair, a UG wobble pair or mispairing, or deleting a GC pair). ❷ RISC assembly facilitates the miRNA strands with 5' ends to be more easily frayed or released from the double helix. The construct disclosed herein is not conducive to RISC follower selection by introducing GC pairs at the 5' end of the follower strand to tighten base pairing at the 5' end of the follower strand. ❸The 5' terminal nucleotide of the small guide RNA is anchored in the phosphate-binding pocket Argonaute (AGO) protein and cannot base pair with its target RNA (Medley et al., Wiley Interdiscip. RNA 12:e1627 (2021); Ma et al., Nature 434:666-70 (2005); Parker et al., Nature 434:663-6 (2005); and Ghildiyal et al., RNA 16:43-56 (2010)). ❹ 5'-U is the preferred nucleotide for AGO2 binding (Seitz et al., Silence 2:4 (2011); Frank et al., Nature 465:818-22 (2010); De et al., Mol. Cell 50:344 -55 (2013); and Czech et al., Nat. Rev. Genet. 12:19-31 (2011)). Introducing U as the first (5') nucleotide of the leader strand and G or C as the first (5') nucleotide of the follower strand promotes AGO2 binding. ❺ Introducing 3' mispairing between the guide and its target mRNA results in more efficient silencing of abundant mRNAs in mammalian cells (De et al., Mol. Cell 50:344-55 (2013); Bofill-De Ros Methods 103:157- 66 (2016); and Amarzguioui et al., Nucleic Acids Res. 31:589-95 (2003)). Although extensive complementarity in the seed region (guide nucleotides 2-8 (g2-g8)) and the middle region of the guide strand is critical for AGO2-mediated cleavage of the mRNA target, base pairing at the 3' end is not required. Indeed, mispairing of positions g18, g19, g20, and g21 with the target mRNA weakened the release of guide RNA from AGO2, an unloading activity regulated by the target mRNA. ❻ Mispairing of the seed region (leader strand nucleotide positions 2-8) between the leader and follower strands promotes unwinding of the follower strand during RISC loading, thereby promoting RISC maturation (Ghildiyal et al., RNA 16:43-56 (2010); Tomari et al., Cell 130:299-308 (2007); Matranga et al., Cell 123:607-20 (2005); and Kawamata et al., Nat. Struct. Mol. Biol. 16:953-60 (2009)). The constructs disclosed herein promote leader-RISC complex maturation by introducing mismatches in the seed region of the leader strand, or by converting mispairs into pairs in the corresponding regions of the follower strand (follower strand nucleotide positions 2-8) nucleotides to reduce or prevent the maturation of the companion-RISC complex. ❼ Introduce GC or UA base pairing to replace the UG swing at the junction of the backbone region and the stem-loop region to promote Dicer protein cleavage (Liu et al., Cell 173: 1191-203 (2018)). ❽ Introducing GC base pairing in the flanking region near the backbone-loop structure (i.e., Drosha cleavage site) can help improve the accuracy of Drosha cleavage. ❾ Introducing paired or mispaired base pairs in the backbone region by mimicking the scaffold structure of E-miR-124. Example 3 : In vitro attenuation of Grik2 mRNA using synthetic inhibitory polynucleotides
為了確定使用本揭露的抑制性多核苷酸的減弱 體外功效,由 Integrated DNA Technologies 合成主幹-環圈 RNA,並在無核酸酶雙股螺旋緩衝液中重新構建。在 95°C 下培養 2 分鐘並隨後逐漸冷卻至室溫後,獲得分子內黏合的寡核苷酸。從 Life Technologies 獲得 siRNA 陰性對照 (siNegative, Cat.# AM4621) 及兩個標靶 Grik2的陽性對照 siRNA (siPositive-1 及 siPositive-2,Cat.#4392420 及 4392420)。根據製造商的方案,使用 LIPOFECTAMINE™ RNAiMAX 轉染試劑,以 10 nM 黏合的主幹-環圈 RNA 寡核苷酸或 siRNA 轉染 SH-SY5Y 細胞。不含 RNA 的轉染混合物 (僅 RNAiMAX) 作為進一步的轉染對照。四重複進行轉染。在進行細胞裂解及 qRT-PCR 前,將細胞在 37°C、5% CO 2下進一步培養直至轉染後 72 小時。將 Grik2mRNA 的表現濃度標準化為肌動蛋白 (ACTB)。透過與設定為 100% 的 siNegative 對照比較取得相對的 Grik2表現濃度。 To determine the attenuated in vitro efficacy using inhibitory polynucleotides of the present disclosure, backbone-loop RNA was synthesized by Integrated DNA Technologies and reconstituted in nuclease-free duplex buffer. After incubation at 95°C for 2 minutes and subsequent gradual cooling to room temperature, intramolecularly bound oligonucleotides were obtained. The siRNA negative control (siNegative, Cat.# AM4621) and two positive control siRNAs targeting Grik2 (siPositive-1 and siPositive-2, Cat.#4392420 and 4392420) were obtained from Life Technologies. SH-SY5Y cells were transfected with 10 nM adhesive backbone-loop RNA oligonucleotides or siRNA using LIPOFECTAMINE™ RNAiMAX Transfection Reagent according to the manufacturer's protocol. Transfection mix without RNA (RNAiMAX only) served as a further transfection control. Transfections were performed in quadruplicate. Cells were further cultured at 37°C, 5% CO until 72 h post- transfection before cell lysis and qRT-PCR. Expressed concentrations of Grik2 mRNA were normalized to actin (ACTB). Relative Grik2 performance concentrations were obtained by comparison with the siNegative control set to 100%.
相較於陰性對照及單獨的轉染試劑 (RNAiMAX),所有測試的主幹-環圈 RNA 寡核苷酸以及陽性對照在 SH-SY5Y 細胞中均顯示 Grik2mRNA 減弱( 圖 7)。在轉染後 72 小時取得具有統計學意義的減弱率 (剩餘 mRNA 表現在 42% 與 69% 之間)。相較於 miRNA 構建體 A、C 及 D,測試構建體維持了 Grik2減弱功效。 實例 4 : RNA 定序表示小鼠神經元中有利的 microRNA 加工特性。 All tested backbone-loop RNA oligonucleotides as well as the positive control showed attenuation of Grik2 mRNA in SH-SY5Y cells compared to the negative control and transfection reagent alone (RNAiMAX) ( Figure 7 ). Statistically significant attenuation rates were achieved at 72 hours post-transfection (remaining mRNA represented between 42% and 69%). Compared to miRNA constructs A, C and D, the tested constructs maintained Grik2 attenuating efficacy. Example 4 : RNA sequencing indicates favorable microRNA processing properties in mouse neurons.
在內源性 microRNA 支架中嵌入主幹-環圈序列 (即 E-miR-30、E-miRNA-124-3 或 E-miR-218-1),並在編碼 AAV 基因體 (pro-AAV) 之順式質體中及神經元特異性啟動子 hSyn1 的調節控制下進行次選殖 (圖5A-5E)。將質體轉染至 N2A 小鼠神經元細胞中。將小鼠 N2A 神經母細胞以每孔 9.0E4 個細胞接種至 24 孔盤中,24 小時後使用 250ng 質體及每孔 1.2μl Lipofectamine 3000 轉染細胞。48 小時後,使用 Qiagen miRNeasy 迷你套組分離富含小 RNA 的 RNA,並進行資料庫製備及小 RNA 定序。使用來自 Perkin Elmer/BIOO 的 NEXTFLEX® 小 RNA 套組產生 microRNA 定序資料庫。在 MiSeq 平台上進行定序。Embedding the backbone-loop sequence (i.e., E-miR-30, E-miRNA-124-3, or E-miR-218-1) in the endogenous microRNA scaffold, and encoding the AAV genome (pro-AAV) Secondary selection occurs in cis-plastids and under the regulatory control of the neuron-specific promoter hSyn1 (Figures 5A-5E). Plasmids were transfected into N2A mouse neuronal cells. Mouse N2A neuroblasts were seeded into 24-well plates at 9.0E4 cells per well, and 24 hours later the cells were transfected using 250ng plastid and 1.2μl Lipofectamine 3000 per well. After 48 hours, small RNA-enriched RNA was isolated using the Qiagen miRNeasy mini kit, and library preparation and small RNA sequencing were performed. A microRNA sequencing library was generated using the NEXTFLEX® small RNA kit from Perkin Elmer/BIOO. Sequencing was performed on the MiSeq platform.
透過電穿孔法轉染 SH-SY5Y 細胞。由 Trizol 萃取總 RNA,及使用 New England Biolabs (NEB) 的 NEBNEXT® 套組產生 microRNA 定序資料庫。在 Novogene 的 HiSeq 上進行定序。SH-SY5Y cells were transfected by electroporation. Total RNA was extracted with Trizol, and a microRNA sequencing library was generated using the NEBNEXT® kit from New England Biolabs (NEB). Sequencing was performed on Novogene’s HiSeq.
在質體轉染後,於小鼠 N2A 神經元中表現及加工合理設計的 miRNA。相較於親代序列 (構建體 A、C 及 D),合理設計的 microRNA 構建體表現出改善的引導與隨從 (G:P) 比率 (參見 表 14)。具體而言,對於相較於構建體 A 具有一處或多處修改的四種合理設計構建體 (構建體 #1-4),構建體 A 的 G:P 比率 0.8 增加至 11 與 27 之間的比率。受益於隨從減少以及潛在的 miRNA 成熟改善,引導股濃度 (總 miRNA 庫中的引導股計數百分比) 從構建體 #1-4 的 0.25% 增加至 1.3-2.6%。在構建體 #39、#40 及 #41 中,構建體 C 的 G:P 比率為 1 及引導濃度為 2.8%,分別增加至 100 以上及 5%-21%。相對於構建體 D 的 G:P 比率為 1,構建體 #50 及 #51 表現出高於 2000 的改善 G:P 比率。最後,構建體 #51 引導濃度增加至 5.1%。 Rationally designed miRNAs are expressed and processed in mouse N2A neurons after plastid transfection. Rationally designed microRNA constructs exhibit improved leader-to-follower (G:P) ratios compared to the parental sequences (Constructs A, C, and D) ( see Table 14 ). Specifically, for four rationally designed constructs (Construct #1-4) with one or more modifications compared to Construct A, the G:P ratio of Construct A increased from 0.8 to between 11 and 27 The ratio. Benefiting from the reduced entourage and potential improvement in miRNA maturation, the guide strand concentration (percent guide strand count in the total miRNA library) was increased from 0.25% for constructs #1-4 to 1.3-2.6%. In constructs #39, #40, and #41, the G:P ratio of construct C was 1 and the primer concentration was 2.8%, increasing to over 100 and 5%-21%, respectively. Constructs #50 and #51 exhibited improved G:P ratios above 2000 relative to construct D's G:P ratio of 1. Finally, the construct #51 bootstrap concentration was increased to 5.1%.
使用人類神經母細胞瘤細胞株 SH-SY5Y 觀察到類似的結果。原始構建體及重新設計的構建體中 GI 的 G/P 比率均高於 N2A 細胞中觀察到的值。這可能是由於兩個細胞系統中生源論/降解恆定的差異,或者可能是由於用於定序資料庫製備的不同套組。
表 14.改善引導/隨從比率
選擇兩個重新設計的構建體 #3 (GI,E-miR-30a) 及 #51 (MW,E-miR218-1),並在兩個構建體 #100 (
圖 6A,SEQ ID NO:256)及 #101 (
圖 6B,SEQ ID NO:257) 中以兩種不同的順序串接。相較於單一構建體 #102 (
圖 5B) 及 #103 (
圖 5C),在 N2A 細胞中兩種多聯體構建體中均觀察到強烈的簇效應,MW 增強而 GI 抑制。然而,由任一多聯體產生的 GI 及 MW 總產量高於攜帶填充序列的單一構建體中單獨產生的 GI 及 MW 的總產量 (表 15)。
表 15. 在 N2A 細胞中重新設計之多聯體構建體的定序分析
從最初的四個構建體 (構建體 A (
表 16)、構建體 B (
表 17)、構建體 C (
表 18) 及構建體 D (
表 19)) 產生 42 種額外的重新設計 。若要減少轉染及定序樣品的數量,在 N2A 細胞中進行 2-3 種質體的共轉染 (例如,
表 16 、 17 及 18中構建體 #7、#42 及 #27 的共轉染),然後進行小 RNA 定序。相對於原始構建體,大部分的這些重新設計均表現出改善的引導/隨從比率。尤其,包含 G9 引導的構建體 B,其引導/隨從比率低於 0.01,透過致使表現出引導/隨從比率為 90.5 之構建體 #36 (
表 17) 的變化得到顯著改善。在 hsa-mir-30a 的支架中,編碼 GI 的四個重新設計表現出超過 100 的改善引導/隨從比率 (
表 16)。由於與樣品中的質體共轉染,對於每個重新設計的構建體,可能低估總 miRNA 庫中的引導百分比。
表 16. 從構建體 A 的 hsa-mir-30a 支架中重新設計 GI
對於蛋白質收集,製備了來自 P0-P1 C57Bl6/J 小鼠的分離皮質神經元,並將神經元以每孔 5.5e+5 個細胞的濃度接種於六孔盤中。接種後兩或三天 (體內天數,DIV2-3),移除一半培養基,並新增 MOI 7.5E+4 的病毒。在 DIV 13,溶解小鼠神經元培養物,溶胞產物用於 SDS PAGE 和免疫點墨法。針對免疫染色,應用了以下抗體:兔抗 GluK2/3 (殖株 NL9 04-921;Merck-Millipore) 和小鼠抗 β-肌動蛋白 (A5316;Sigma) 作為初級抗體,且山羊中產生的適當 800nm 螢光結合二級抗體 (IRDye 800 山羊抗小鼠 Li-COR 926-32210 或 IRDye 800 山羊抗兔 Li-COR 926-32211) 作為二級抗體。透過在 Li-COR 上 800nm 處讀取來偵測標靶蛋白質。使用 Empiria Studio 軟體進行分析。為了定量,透過 β-肌動蛋白表現然後透過對照條件,標準化每個泳道的螢光信號強度。For protein collection, dissociated cortical neurons from P0-P1 C57Bl6/J mice were prepared and neurons were seeded in six-well dishes at a concentration of 5.5e+5 cells per well. Two or three days after inoculation (days in vivo, DIV2-3), remove half of the culture medium and add virus at an MOI of 7.5E+4. At DIV 13, mouse neuronal cultures were lysed, and lysates were used for SDS PAGE and immunoblotting. For immunostaining, the following antibodies were applied: rabbit anti-GluK2/3 (clone NL9 04-921; Merck-Millipore) and mouse anti-β-actin (A5316; Sigma) as primary antibodies, and appropriate antibodies produced in goat 800nm fluorescent-conjugated secondary antibodies (IRDye 800 goat anti-mouse Li-COR 926-32210 or IRDye 800 goat anti-rabbit Li-COR 926-32211) were used as secondary antibodies. Target proteins are detected by reading at 800nm on Li-COR. Analyzes were performed using Empiria Studio software. For quantitation, fluorescent signal intensity in each lane was normalized by β-actin expression and then by control conditions.
為了透過主幹-環圈 RT-qPCR 進行 RNA 收集和 miRNA 定量,在 DIV 13 的冰冷 PBS 中沖洗小鼠皮層培養物,然後刮入 700 µl Qiazol (QIAGEN)。使用 miRNeasy 迷你套組 (QIAGEN 217004) 萃取總 RNA。透過 NANODROP™ One 分光光度計 (Thermofischer) 評定樣品的總 RNA 含量和品質。使用 TaqMan microRNA 反轉錄套組和 GI 或 MW 序列特異性反轉錄引子將 20ng 總 RNA 或合成寡 RNA (10 3- 10 9複製數量) 反轉錄成 cDNA ,然後使用 TAQMAN TM快速通用 qPCR 主混合物和特異於 GI 或 MW 的 qPCR 引子/探針進行 qPCR。根據使用合成 GI 或 MW 寡 RNA 建立的標準曲線計算的樣品中 GI 或 MW 的複製數量。 結果 For RNA collection and miRNA quantification by backbone-loop RT-qPCR, mouse cortical cultures were rinsed in ice-cold PBS at DIV 13 and scraped into 700 µl Qiazol (QIAGEN). Total RNA was extracted using the miRNeasy mini kit (QIAGEN 217004). The total RNA content and quality of the samples were assessed by a NANODROP™ One spectrophotometer (Thermofischer). Reverse-transcribe 20ng of total RNA or synthetic oligoRNA (10 3 - 10 9 copy number) into cDNA using the TaqMan microRNA Reverse Transcription Kit and GI or MW sequence-specific reverse transcription primers, then use TAQMAN TM Fast Universal qPCR Master Mix and specific Perform qPCR using GI or MW qPCR primers/probes. The number of copies of GI or MW in a sample calculated from a standard curve established using synthetic GI or MW oligoRNA. result
與單一構建體載體相比 (#102,SEQ ID NO:252;#103,SEQ ID NO:253),多聯體載體 #100 和 #101 (SEQ ID NO:分別為 256 和 257) 產生 GI 和 MW 兩者,因此在 MCN 細胞中產生更高濃度的治療性 miRNA ( 圖 8A)。簇效應可能存在,因為當在相同轉錄本中與 GI 連接時,MW 表現似乎得到提升。陰性對照 AAV9 RNA 無效載體 (Ctrl) 在載體基因體中攜帶填充序列,但不包含任何 miRNA 構建體。一致地,在使用多聯體載體 #100 和 #101 處理的 MCN 樣品中觀察到 GLUK2 明顯降低,但在單一構建載體中沒有觀察到此現象 ( 圖 8B)。 實例 6 :使用 AAV9 載體編碼重新設計的多聯體治療後,人類 GlutaNeuron 細胞中的 Grik2 轉錄本明顯減少。 Concatemer vectors #100 and #101 (SEQ ID NO: 256 and 257, respectively) yielded GI and MW both, thus producing higher concentrations of therapeutic miRNAs in MCN cells ( Figure 8A ). A cluster effect may exist, as MW performance appears to be enhanced when linked to GI in the same transcript. The negative control AAV9 RNA null vector (Ctrl) carries a stuffer sequence in the vector genome but does not contain any miRNA construct. Consistently, a significant decrease in GLUK2 was observed in MCN samples treated with concatemer vectors #100 and #101, but not in single construct vectors ( Figure 8B ). Example 6 : Grik2 transcripts are significantly reduced in human GlutaNeuron cells following treatment with an AAV9 vector encoding a redesigned concatemer .
解凍 iPSC 誘導的 ICELL® GlutaNeurons (Fujifilm Cat.R1034),並將細胞以每孔 2E+6 個細胞的密度接種至 PLO/Matrigel 披覆的 6 孔培養皿中。24 小時後,AAV9 載體 #100 或 RNA 無效載體 #106 (SEQ ID NO:262) 在 2mL 新鮮培養基中以 3E+5 的 MOI 新增至細胞中 (每種條件 n = 4)。性狀導入後 11 天,透過新增 Qiazol 溶解緩衝液並新增加入 RNA 寡核苷酸 (每 50,000 個細胞 3uL 0.1nM 九寡核苷酸混合物) 獲得細胞。按照使用 Qiagen miRNeasy 套組分離大 RNA 和小 RNA/miRNA 富含片段的方案,提萃取總 RNA 並使其富含 miRNA。使用 Perkin Elmer/BIOO 的 NEXTFLEX® 小 RNA 套組產生 microRNA 定序資料庫。在 HiSeq 平台 (Genewiz) 上進行定序。也製備了 RNA 序列資料庫並對其進行了定序。Thaw iPSC-induced ICELL® GlutaNeurons (Fujifilm Cat.R1034) and seed cells into PLO/Matrigel-coated 6-well dishes at a density of 2E+6 cells per well. After 24 hours, AAV9 vector #100 or RNA null vector #106 (SEQ ID NO: 262) was added to cells at an MOI of 3E+5 in 2 mL of fresh medium (n = 4 per condition). Eleven days after trait introduction, cells were harvested by adding Qiazol lysis buffer and adding RNA oligonucleotides (3uL 0.1nM nine-oligonucleotide mixture per 50,000 cells). Total RNA was extracted and enriched for miRNA following the protocol for isolating large RNA and small RNA/miRNA-enriched fragments using the Qiagen miRNeasy kit. Generate microRNA sequencing libraries using Perkin Elmer/BIOO's NEXTFLEX® Small RNA Kit. Sequencing was performed on the HiSeq platform (Genewiz). An RNA-seq library was also prepared and sequenced.
小 RNA 定序分析顯示合成的 miRNA GI 和 MW 在建構體 #100 處理的 iPSC 衍生 GlutaNeuron 細胞 (
表 20) 中以高引導/隨從比在生理活性濃度進行加工。在性狀導入效率為 50% 的情況下,#100 處理的 iPSC 衍生 GlutaNeuron 細胞 (n=4) 中的 Grik2 轉錄本減少了 18.5% (
圖 9)。
表 20. 對使用 #100 性狀導入的 iPSC 衍生 GlutaNeuron 細胞進行小 RNA 定序
將人體器官切片分別轉移至保持在 30 至 32°C 的記錄室,並於存在 5 µM gabazine (Sigma-Aldrich) 的情況下,使用充氧 (95% O2 和 5% CO2) ACSF 連續灌注 (每分鐘 2 至 3 mL);包含 ACSF (以 mM 為單位):NaCl (126.0)、KCl (3.5)、NaH 2PO 4(1.2)、NaHCO 3(26)、MgCl 2(1.3)、CaCl 2(2.0) 和葡萄糖 (10),pH 約 7.4 (Sigma-Aldrich)。使用放置在齒狀迴顆粒細胞層中的單極鎳鉻合金線製成局部場電位 (LFP) 記錄。DAM-80 放大器用於記錄 (低濾波器,0.1 Hz;高通濾波器,3 KHz;World Precision Instruments,Sarasota,FL);使用 Digidata 1440A (Molecular Devices) 將資料數位化 (20 kHz) 至電腦,並使用 Clampex 10.1 軟體 (PClamp,Molecular Devices) 取得。使用 Clampfit 9.2 (PClamp) 和 MiniAnalysis 6.0.1 (Synaptosoft,Decatur,GA) 離線分析信號。 結果 Human organ slices were individually transferred to a recording chamber maintained at 30 to 32°C and continuously perfused (each time) with oxygenated (95% O2 and 5% CO2) ACSF in the presence of 5 µM gabazine (Sigma-Aldrich). min 2 to 3 mL); contains ACSF (in mM): NaCl (126.0), KCl (3.5), NaH 2 PO 4 (1.2), NaHCO 3 (26), MgCl 2 (1.3), CaCl 2 (2.0 ) and glucose (10), pH approximately 7.4 (Sigma-Aldrich). Local field potential (LFP) recordings were made using monopolar nichrome wires placed in the granule cell layer of the dentate gyrus. A DAM-80 amplifier was used for recording (low filter, 0.1 Hz; high-pass filter, 3 KHz; World Precision Instruments, Sarasota, FL); data were digitized (20 kHz) to a computer using a Digidata 1440A (Molecular Devices), and Obtained using Clampex 10.1 software (PClamp, Molecular Devices). Signals were analyzed offline using Clampfit 9.2 (PClamp) and MiniAnalysis 6.0.1 (Synaptosoft, Decatur, GA). result
多聯體載體 #100 (載體圖描繪於 圖 14) 於 4-AP/gabazine ( 圖 10A) 存在的過度興奮條件和生理條件 ( 圖 10B) 下,抑制生物體外 TLE 海馬迴的自發性。 實例 8 :毛果芸香鹼 (pilocarpine) 癲癇小鼠模型的生理和行為研究指出癲癇症狀有所改善。 AAV 投予 Concatemer Vector #100 (vector diagram depicted in Figure 14 ) inhibits TLE hippocampal spontaneity in vitro under hyperexcitable conditions in the presence of 4-AP/gabazine ( Figure 10A ) and under physiological conditions ( Figure 10B ). Example 8 : Physiological and behavioral studies in a pilocarpine epilepsy mouse model indicated an improvement in epileptic symptoms. AAV cast
將之前透過全身注射毛果芸香鹼 (pilocarpine) 至少 2 個月而致癲癇的雄性瑞士小鼠置於立體定位架中。鑽四個孔,將 AAV9 雙側注入至海馬迴的背側和腹側齒狀迴中。以每分鐘 0.2µl 的速度緩慢注入含有 AAV 的規定體積溶液 (每注射部位 1.0 µL 2.5e8 GC,每半球兩個注射部位,以此方式每半球 5e8 GC和每大腦 1e9)。 過動 Male Swiss mice previously rendered epileptic by systemic injection of pilocarpine for at least 2 months were placed in a stereotaxic frame. Four holes were drilled and AAV9 was injected bilaterally into the dorsal and ventral dentate gyrus of the hippocampus. Slowly inject the defined volume of solution containing AAV (1.0 µL 2.5e8 GC per injection site, two injection sites per hemisphere, in this way 5e8 GC per hemisphere and 1e9 per brain) at a rate of 0.2 µl per minute. Hyperactivity
在 AAV 注射前 1 週和注射後 2 週評估癲癇小鼠 (SE 後 > 2 個月) 的運動 ( 圖 11A)。也評估了非癲癇小鼠 (野生型瑞士雄性小鼠,18 至 21 週齡) 的運動。在實驗前 1 天將小鼠轉移至行為分析室以適應環境;在 9 點至 18 點光照/黑暗循環室溫 (20 至 22°C) 下飼養小鼠,並可隨意取得食物和水。此後,所有與測試動物接觸過的材料均使用醋酸清洗,以防止嗅覺線索。首先,使用曠野實驗 (Müller 等人,2009) 測試自發探索行為。簡而言之,將小鼠放入 50 × 50 × 50 cm 藍色聚氯乙烯盒的中心 10 分鐘,並使用連接至追蹤軟體 EthoVision Color (Noldus,The Netherlands) 的攝影機記錄軌跡;分析了小鼠在 10 分鐘探索期間的速度和總距離。 腦電圖電極植入和記錄 Movement of epileptic mice (>2 months post-SE) was assessed 1 week before and 2 weeks after AAV injection ( Fig. 11A ). Movement of non-epileptic mice (wild-type Swiss male mice, 18 to 21 weeks old) was also assessed. Mice were transferred to the behavioral analysis room 1 day before the experiment to acclimate; mice were housed at room temperature (20 to 22°C) with a 9:00 to 18:00 light/dark cycle and had ad libitum access to food and water. Thereafter, all materials that had been in contact with the test animals were cleaned with acetic acid to prevent olfactory cues. First, spontaneous exploratory behavior was tested using an open field experiment (Müller et al., 2009). Briefly, mice were placed into the center of a 50 × 50 × 50 cm blue polyvinyl chloride box for 10 min, and trajectories were recorded using a video camera connected to the tracking software EthoVision Color (Noldus, The Netherlands); mice were analyzed Speed and total distance during the 10-minute exploration period. EEG electrode implantation and recording
在 AAV 注射後 3 週,將一個深度導線電極植入治療的小鼠中。在異氟醚 (isoflurane) 麻醉下進行手術。將電極立體定向放置入齒狀迴 (DG) 中 (來自前囟的 Paxinos 和 Watson 坐標:AP -2.55 mm,ML +1.65 mm,DV -2.25 mm)。在小腦上方放置一個額外的螺釘,作為接地電極。使用牙科黏固劑將電極和螺釘固定在顱骨上。在恢復期間,24 和 48 小時後,將給予動物每公斤 5 mg s.c. 卡洛芬 (carprofen,RIMADYL®)。A depth lead electrode was implanted into the treated mice 3 weeks after AAV injection. The surgery is performed under isoflurane anesthesia. Electrodes were placed stereotaxically into the dentate gyrus (DG) (Paxinos and Watson coordinates from bregma: AP -2.55 mm, ML +1.65 mm, DV -2.25 mm). Place an additional screw above the cerebellum to serve as a ground electrode. Dental cement is used to secure the electrodes and screws to the skull. During the recovery period, animals will be given 5 mg s.c. carprofen (RIMADYL®) per kilogram after 24 and 48 hours.
使用遙測系統 (Data Sciences International,St. Paul,MN) 每天 24 小時監測腦電圖 (放大 (1000 倍),以 0.16 至 97 Hz 通過過濾,取得頻率為 500 Hz) 持續 5 天。EEG was monitored 24 h per day for 5 days using a telemetry system (Data Sciences International, St. Paul, MN) (magnified (1000x), filtered at 0.16 to 97 Hz, acquired at 500 Hz).
海馬迴內 EEG 蹤跡表示插入 DG 的電極與位於小腦上方的電極之間的電位差。 小 RNA 定序分析: The intrahippocampal EEG trace represents the potential difference between the electrode inserted in the DG and the electrode located above the cerebellum. Small RNA sequencing analysis:
四個星期後,處死動物,切除海馬迴並快速冷凍。溶解後,使用 ALLPREP® DNA/RNA 小型套組 (Qiagen,REF# 80204) 從相同的小鼠海馬迴組織中萃取總 RNA。在 GenomeScan 中使用具備 Illumina UDI 的 NEXTFLEX® 小 RNA 定序 v3 套組 (NOVA-5132-22),取得 400ng 總 RNA 和新增加入 RNA 寡核苷酸混合物 (每 10pg 總 RNA 4500 個分子) 進行資料庫製備。使用 Ampure 磁珠尺寸選擇移除可能的轉接子二聚體。根據製造商的方案使用 NovaSeq6000 進行群集和 DNA 定序。 結果 Four weeks later, the animals were sacrificed, and the hippocampi were excised and snap frozen. After lysis, total RNA was extracted from the same mouse hippocampus tissue using the ALLPREP® DNA/RNA Mini Kit (Qiagen, REF# 80204). Use the NEXTFLEX® small RNA sequencing v3 kit (NOVA-5132-22) with Illumina UDI in GenomeScan to obtain 400ng of total RNA and newly add RNA oligonucleotide mixture (4500 molecules per 10pg of total RNA) for data Library preparation. Possible adapter dimers were removed using Ampure magnetic bead size selection. Clustering and DNA sequencing were performed using NovaSeq6000 according to the manufacturer's protocol. result
構建體 #100 和構建體 #101 在每大腦 1e9 GC 的測試劑量下有效減少毛果芸香鹼 (pilocarpine) 模型體內中的過動表現型 ( 圖 11A)。所有其他構建體,包括 RNA 無效對照構建體 (#106) 和兩個單一構建體,治療後並未減少過動現象。EEG 評估進一步顯示,與對照組相比,構建體 #100 和構建體 #101 可有效減少每天的平均癲癇發作次數 ( 圖 11B)。以這些結果為基礎,在構建體 #100 和構建體 #101 中發現的具有一個啟動子驅動兩種 miRNA 表現的多聯體設計,似乎比在構建體 #102 和構建體 #103 中發現的具有一個啟動子驅動一種 miRNA 表現的單一設計更有效。 Construct #100 and Construct #101 effectively reduced the hyperactive phenotype in the pilocarpine model in vivo at the tested dose of 1e9 GC per brain ( Figure 11A ). All other constructs, including the RNA null control construct (#106) and the two single constructs, did not reduce hyperactivity after treatment. EEG evaluation further showed that Construct #100 and Construct #101 were effective in reducing the average number of seizures per day compared to the control group ( Figure 11B ). Based on these results, it appears that the concatemer design with one promoter driving the expression of both miRNAs found in construct #100 and construct #101 has better performance than that found in construct #102 and construct #103. A single design in which one promoter drives the expression of one miRNA is more efficient.
三名操作人員獨立對五種動物行為 (築巢、搖晃、毛髮、觸摸和運動) 進行評分。與使用 RNA 無效對照載體 #106 治療的毛果芸香鹼 (pilocarpine) 誘導癲癇小鼠相比,使用 Grik2目標載體治療的小鼠行為得到改善,其中建構體 #100 展現出最顯著的效果 ( 圖 11C)。 Three operators independently scored five animal behaviors (nesting, rocking, grooming, touching, and locomotion). Mice treated with the Grik2 targeting vector had improved behavior compared to mice with pilocarpine-induced epilepsy treated with the RNA null control vector #106, with construct #100 exhibiting the most significant effect ( Figure 11C ).
透過小 RNA 定序分析,測量從雙側注射到小鼠海馬迴中的構建體 #100 AAV9 載體表現和加工的 GI 和 MW 總複製數量。每 10pg 總 RNA (每個細胞的平均量),在兩個海馬迴中分別偵測到 GI 的 392.2 個複製數量和 573.1 個複製數量,以及 MW 的 1331.3 個複製數量和 2138.8 個複製數量 (
表 21)。miRNA 的分子在生理活性範圍內。GI 和 MW 的引導/隨從比均高於 100,表示隨從股每 10pg 少於 5 個複製數量,並且低於生理活性濃度。
表 21. 對使用多聯體 #100 處理的兩個海馬迴的小 RNA 定序
為了進一步評估這些 microRNA 構建體在減少毛果芸香鹼 (pilocarpine) 癲癇小鼠大腦中癲癇症狀方面的有效性,將注射劑量修改為每個注射部位 2.5 x 10 9GC,每個半球有 2 個注射部位,在執行劑量反應研究後,結果為每個半球 5 x 10 9GC 和每個大腦 1 x 10 10GC ( 圖 12A 及圖 12B)。同樣,建構體 #100 證明 在體內減少過動和減少癲癇發作活動方面均是有效的。在一項獨立的劑量反應研究中, 對照於 RNA 無效控制載體,使用載體 #100 以每個大腦的最高劑量 1E+9 和 1E+10 治療的毛果芸香鹼 (pilocarpine) 小鼠中觀察到過動表現型 ( 圖 13A) 和癲癇發作 ( 圖 13B) 的劑量依賴性減少。 其他實施例 To further evaluate the effectiveness of these microRNA constructs in reducing epileptic symptoms in the brains of pilocarpine epileptic mice, the injection dose was modified to 2.5 x 10 9 GC per injection site, with 2 injection sites per hemisphere, in After performing a dose response study, the results were 5 x 10 9 GC per hemisphere and 1 x 10 10 GC per brain ( Figure 12A and Figure 12B ). Likewise, Construct #100 proved effective in reducing hyperactivity and reducing seizure activity in vivo . In a separate dose-response study, a hyperactive phenotype was observed in pilocarpine mice treated with vehicle #100 at the highest doses of 1E+9 and 1E+10 per brain compared to RNA-null control vehicle. ( Fig. 13A ) and dose-dependent reduction in epileptic seizures ( Fig. 13B ). Other embodiments
本揭露之所闡述的各種修改及變化為熟習此項技術者所明瞭,其並不背離本揭露之範圍及精神。儘管已結合具體實施例闡述了本揭露,但應理解,所主張之本揭露不應過度地限於該等具體實施例。實際上,熟習該領域者所明瞭之對於用於實施本揭露之所闡述模式之各種修改皆意欲屬本揭露的範圍內。Various modifications and variations described in this disclosure will be apparent to those skilled in the art without departing from the scope and spirit of this disclosure. Although the disclosure has been described in connection with specific embodiments, it should be understood that the disclosure as claimed should not be unduly limited to such specific embodiments. Indeed, various modifications to the described modes for carrying out the disclosure that are apparent to those skilled in the art are intended to be within the scope of the disclosure.
其他實施例在申請專利範圍中。 參考文獻 Other embodiments are within the scope of the patent claims. References
在整個申請中,各種參考資料描述了本揭露所屬的現有技術。這些參考文獻的揭露特此透過引用併入本揭露中: Bahn S.、Volk B.Wisden W. (1994)。發育中大鼠大腦的紅藻氨酸受體基因表現。(Kainate receptor gene expression in the developing rat brain.)J. Neurosci。14 5525-5547。10.1523/JNEUROSCI.14-09-05525.1994。 Boudreau Ryan L.、Rodríguez-Lebrón Edgardo、Davidson Beverly L.,大腦 RNAi 醫學:進展和挑戰,人類分子遺傳學,第 20 卷,第 R1 期,2011 年 4 月 15 日,第 R21 至 R27 頁 Bouvier G.、Larsen R.S.、Rodríguez-Moreno A.、Paulsen O.、Sjostrom P.J. (2018)。解決突觸前 NMDA 受體的爭論。(Towards resolving the presynaptic NMDA receptor debate.)Curr.Opin.Neurobiol.51 1-7。10.1016/j.conb.2017.12.020 Crépel V、Mulle C (2015) 癲癇中紅藻氨酸受體的生理病理學。(Physiopathology of kainate receptors in epilepsy.)Curr Opin Pharmacol 20:83-88; doi: 10.1016/j.coph.2014.11.012.Epub 2014 Dec 13。 Englot、DJ. 等人 (2013) 兒科患者顳葉外癲癇切除手術後的癲癇發作結果:系統回顧。(Seizure outcomes after resective surgery for extra-temporal lobe epilepsy in pediatric patients: A systematic review.)J. Neurosurgery。12(2):97-201 Fritsch B.、Reis J.、Gasior M.、Kaminski R.M.、Michael A.、Rogawski M.A. (2014)。GluK1 紅藻氨酸受體在癲癇發作、癲癇放電和癲癇形成過程的角色。(Role of GluK1 kainate receptors in seizures, epileptic discharges, and epileptogenesis.)J. Neurosci。34 5765-5775。10.1523/JNEUROSCI.5307-13.2014 Gabriel S、Njunting M、Pomper JK、Merschhemke M、Sanabria ERG、Eilers A、Kivi A、Zeller M、Meencke H-J、Cavalheiro E a、einemann U、Lehmann T-N (2004) 患有和不患有海馬迴硬化症患者之人類齒狀迴中的刺激和鉀誘導的類癲癇活動。(Stimulus and potassium-induced epileptiform activity in the human dentate gyrus from patients with and without hippocampal sclerosis.)J Neurosci 24:10416-10430。 Gruber A.、Lorenz R.、Bernhart S.H.、Neuböck R.、Hofacker I.L (2008)。維也納 RNA 網路套組。核酸研究。36:W70-4 Hardy J. (2010)。帕金森氏症路徑的遺傳分析。(Genetic analysis of pathways to Parkinson disease.)Neuron,68 (2),201–206。doi:10.1016/j.neuron.2010.10.014 Melyan Z.、Lancaster B.、Wheal H. V. (2004)。紅藻氨酸受體突觸活化對內在興奮性的代謝調節。(Metabotropic regulation of intrinsic excitability by synaptic activation of kainate receptors.)J. Neurosci。24 4530-4534。10.1523/JNEUROSCI.5356-03.2004 Melyan Z.、Wheal H. V.、Lancaster B. (2002)。代謝型媒介的紅藻氨酸受體調節 isAHP 和錐體細胞的興奮性。(Metabotropic-mediated kainate receptor regulation of isAHP and excitability in pyramidal cells.)Neuron 34 107-114。10.1016/S0896-6273(02)00624-4 Mulle C.、Sailer A.、Pérez-Otaño I.、Dickinson-Anson H.、Castillo P. E.、Bureau I. 等人(1998)。在 GluR6 缺陷小鼠中改變了突觸生理學並降低了紅藻氨酸誘導之癲癇發作的敏感性。(Altered synaptic physiology and reduced susceptibility to kainate-induced seizures in GluR6-deficient mice.)Nature 392 601-605。 Peret A, Christie L a.、Ouedraogo DW、Gorlewicz A、Epsztein J、Mulle C、Crépel V (2014) 異常的含 GluK2 紅藻氨酸受體對顳葉癲癇慢性發作的貢獻。(Contribution of Aberrant GluK2-Containing Kainate Receptors to Chronic Seizures in Temporal Lobe Epilepsy.)Cell Rep 8:347-354。 Reiner A、Arant RJ 和 Isacoff EY (2012) GluK2/GluK5 紅藻氨酸受體複合物的組裝化學計量學。(Assembly Stoichiometry of the GluK2/GluK5 Kainate Receptor Complex.)Cell Rep 1:234-240。 Represa A、Le Gall La Salle G、Ben-Ari Y (1989a) 大鼠癲癇激發模型中的海馬迴可塑性。(Hippocampal plasticity in the kindling model of epilepsy in rats.)Neurosci Lett 99:345-350。 Represa A、Robain O、Tremblay E、Ben-Ari Y (1989b) 兒童癲癇中的海馬迴可塑性。(Hippocampal plasticity in childhood epilepsy.)Neurosci Lett 99:351-355。 Rodríguez-Moreno A.、Herreras O.、Lerma J. (1997)。大鼠海馬迴中的紅藻氨酸受體突觸前下調 GABA 抑制。(Kainate receptors presynaptically downregulate GABAergic inhibition in the rat hippocampus.)Neuron 19 893-901。10.1016/S0896-6273(00)80970-8。 Rodríguez-Moreno A.、Sihra T. S. (2007a)。具有代謝操作模式的紅藻氨酸受體。(Kainate receptors with a metabotropic modus operandi.)Trends Neurosci。30 630-637。 Rodríguez-Moreno A.、Sihra T. S. (2007b)。紅藻氨酸受體在中樞神經系統中的促代謝作用。(Metabotropic actions of kainate receptors in the CNS.)J. Neurochem。103 2121-2135。 Sapru Mohan K.、Yates Jonathan W.、Hogan Shea、Jiang Lixin、Halter Jeremy、Bohn Martha C. (2006)。使用慢病毒媒介的 RNAi 在體外和大鼠大腦中讓人類 α- 突觸核蛋白保持沉默。(Silencing of human α-synuclein in vitro and in rat brain using lentiviral-mediated RNAi.)Neurology.198:382-390 Smolders I.、Bortolotto Z.A.、Clarke V.R.、Warre R.、Khan G.M.、O'Neill M.J. 等人(2002)。含 GLU (K5) 紅藻氨酸受體的拮抗劑可預防毛果芸香鹼 (pilocarpine) 誘導的邊緣癲癇發作。(Antagonists of GLU(K5)-containing kainate receptors prevent pilocarpine-induced limbic seizures.)Nat. Neurosci。5 796-804。10.1038/nn88 Sutula T、Cascino G、Cavazos J、Parada I、Ramirez L (1989) 癲癇性人類顳葉中的苔狀纖維突觸重組。(Mossy fiber synaptic reorganization in the epileptic human temporal lobe.)Ann Neurol 26:321-330。 Tauck DL、Nadler J V (1985) 紅藻氨酸治療的大鼠海馬迴結構中功能性苔狀纖維快速成長的證據。(Evidence of functional mossy fiber sprouting in hippocampal formation of kainic acid-treated rats.)J Neurosci 5:1016-1022 Valbuena S.、Lerma J. (2016)。非規範信號,配體閘門離子通道的隱藏生物。(Non-canonical signaling, the hidden life of ligand-gated ion channels.)Neuron 92 316-329。10.1016/j.neuron.2016.10.016 Wang L.、Bai J. 和 Hu Y. (2007) 人類 alphaCaMKII 啟動子中 RA 反應要素和轉錄緘默子的鑑定。(Identification of the RA Response Element and Transcriptional Silencer in Human alphaCaMKII Promoter.)Mol.Biol.Rep.35(1):37-44 Zinn、E.、Pacouret、S.、Khaychuk、V.、Turunen、H. T.、Carvalho、L. S.、Andres-Mateos、E.、…Vandenberghe、L. H. (2015)。病毒進化譜系透過電腦模擬重建產生的一種有效基因治療載體。(In Silico Reconstruction of the Viral Evolutionary Lineage Yields a Potent Gene Therapy Vector.)Cell reports,12 (6),1056 至 1068。doi:10.1016/j.celrep.2015.07.019 Throughout this application, various references describe the prior art to which this disclosure belongs. The disclosures of these references are hereby incorporated by reference into this disclosure: Bahn S., Volk B. Wisden W. (1994). Kainate receptor gene expression in the developing rat brain. (Kainate receptor gene expression in the developing rat brain.) J. Neurosci. 14 5525-5547. 10.1523/JNEUROSCI.14-09-05525.1994. Boudreau Ryan L., Rodríguez-Lebrón Edgardo, Davidson Beverly L., Brain RNAi Medicine: Progress and Challenges, Human Molecular Genetics, Volume 20, Issue R1, 15 April 2011, Pages R21 to R27 Bouvier G., Larsen R.S., Rodríguez-Moreno A., Paulsen O., Sjostrom P.J. (2018). Resolving the presynaptic NMDA receptor debate. (Towards resolving the presynaptic NMDA receptor debate.) Curr.Opin.Neurobiol.51 1-7. 10.1016/j.conb.2017.12.020 Crépel V, Mulle C (2015) Physiological pathology of kainate receptors in epilepsy. (Physiopathology of kainate receptors in epilepsy.) Curr Opin Pharmacol 20:83-88; doi: 10.1016/j.coph.2014.11.012. Epub 2014 Dec 13. Englot, DJ. et al (2013) Seizure outcomes after resection surgery for extratemporal epilepsy in pediatric patients: a systematic review. (Seizure outcomes after resective surgery for extra-temporal lobe epilepsy in pediatric patients: A systematic review.) J. Neurosurgery. 12(2):97-201 Fritsch B., Reis J., Gasior M., Kaminski R. M., Michael A., Rogawski M. A. (2014). Role of the GluK1 kainate receptor in epileptic seizures, epileptic discharges, and epileptogenesis. (Role of GluK1 kainate receptors in seizures, epileptic discharges, and epileptogenesis.) J. Neurosci. 34 5765-5775.10.1523/JNEUROSCI.5307-13.2014 Gabriel S, Njunting M, Pomper JK, Merschhemke M, Sanabria ERG, Eilers A, Kivi A, Zeller M, Meencke H-J, Cavalheiro E a, einemann U, Lehmann T-N (2004) Patients with and without hippocampal sclerosis Stimulation and potassium-induced epileptiform activity in the human dentate gyrus. (Stimulus and potassium-induced epileptiform activity in the human dentate gyrus from patients with and without hippocampal sclerosis.) J Neurosci 24:10416-10430. Gruber A., Lorenz R., Bernhart S.H., Neuböck R., Hofacker I.L (2008). Vienna RNA Network Kit. Nucleic acid research. 36:W70-4 Hardy, J. (2010). Genetic analysis of pathways in Parkinson's disease. (Genetic analysis of pathways to Parkinson disease.) Neuron, 68 (2), 201–206. doi:10.1016/j.neuron.2010.10.014 Melyan Z., Lancaster B., Wheal H. V. (2004). Metabolic regulation of intrinsic excitability by synaptic activation of kainate receptors. (Metabotropic regulation of intrinsic excitability by synaptic activation of kainate receptors.) J. Neurosci. 24 4530-4534.10.1523/JNEUROSCI.5356-03.2004 Melyan Z., Wheal H. V., Lancaster B. (2002). Metabotropically mediated kainate receptors regulate isAHP and pyramidal cell excitability. (Metabotropic-mediated kainate receptor regulation of isAHP and excitability in pyramidal cells.) Neuron 34 107-114. 10.1016/S0896-6273(02)00624-4 Mulle C., Sailer A., Pérez-Otaño I., Dickinson-Anson H., Castillo P. E., Bureau I. et al. (1998). Altered synaptic physiology and reduced susceptibility to kainate-induced seizures in GluR6-deficient mice. (Altered synaptic physiology and reduced susceptibility to kainate-induced seizures in GluR6-deficient mice.) Nature 392 601-605. Peret A, Christie L a., Ouedraogo DW, Gorlewicz A, Epsztein J, Mulle C, Crépel V (2014) Contribution of abnormal GluK2-containing kainate receptors to chronic seizures in temporal lobe epilepsy. (Contribution of Aberrant GluK2-Containing Kainate Receptors to Chronic Seizures in Temporal Lobe Epilepsy.) Cell Rep 8:347-354. Reiner A, Arant RJ and Isacoff EY (2012) Assembly stoichiometry of the GluK2/GluK5 kainate receptor complex. (Assembly Stoichiometry of the GluK2/GluK5 Kainate Receptor Complex.) Cell Rep 1:234-240. Represa A, Le Gall La Salle G, Ben-Ari Y (1989a) Hippocampal plasticity in a rat challenge model of epilepsy. (Hippocampal plasticity in the kindling model of epilepsy in rats.) Neurosci Lett 99:345-350. Represa A, Robain O, Tremblay E, Ben-Ari Y (1989b) Hippocampal plasticity in childhood epilepsy. (Hippocampal plasticity in childhood epilepsy.)Neurosci Lett 99:351-355. Rodríguez-Moreno A., Herreras O., Lerma J. (1997). Presynaptic downregulation of GABA inhibition by kainate receptors in the rat hippocampus. (Kainate receptors presynaptically downregulate GABAergic inhibition in the rat hippocampus.) Neuron 19 893-901. 10.1016/S0896-6273(00)80970-8. Rodríguez-Moreno A., Sihra T. S. (2007a). Kainate receptors with metabolic modes of operation. (Kainate receptors with a metabotropic modus operandi.)Trends Neurosci. 30 630-637. Rodríguez-Moreno A., Sihra T. S. (2007b). Metabotropic effects of kainate receptors in the central nervous system. (Metabotropic actions of kainate receptors in the CNS.) J. Neurochem. 103 2121-2135. Sapru Mohan K., Yates Jonathan W., Hogan Shea, Jiang Lixin, Halter Jeremy, Bohn Martha C. (2006). Silencing of human α-synuclein in vitro and in rat brain using lentivirally mediated RNAi. (Silencing of human α-synuclein in vitro and in rat brain using lentiviral-mediated RNAi.)Neurology.198:382-390 Smolders I., Bortolotto Z.A., Clarke V.R., Warre R., Khan G.M., O'Neill M.J., et al. (2002). Antagonists containing GLU (K5) kainate receptors prevent pilocarpine-induced limbic seizures. (Antagonists of GLU(K5)-containing kainate receptors prevent pilocarpine-induced limbic seizures.) Nat. Neurosci. 5 796-804.10.1038/nn88 Sutula T, Cascino G, Cavazos J, Parada I, Ramirez L (1989) Mossy fiber synaptic reorganization in the epileptic human temporal lobe. (Mossy fiber synaptic reorganization in the epileptic human temporal lobe.) Ann Neurol 26:321-330. Tauck DL, Nadler J V (1985) Evidence for rapid growth of functional mossy fibers in hippocampal structures in kainic acid-treated rats. (Evidence of functional mossy fiber sprouting in hippocampal formation of kainic acid-treated rats.) J Neurosci 5:1016-1022 Valbuena S., Lerma J. (2016). Hidden biology of non-canonical signaling, ligand-gated ion channels. (Non-canonical signaling, the hidden life of ligand-gated ion channels.) Neuron 92 316-329. 10.1016/j.neuron.2016.10.016 Wang L., Bai J. and Hu Y. (2007) Identification of RA-responsive elements and transcriptional reticence in the human alphaCaMKII promoter. (Identification of the RA Response Element and Transcriptional Silencer in Human alphaCaMKII Promoter.) Mol.Biol.Rep.35(1):37-44 Zinn, E., Pacouret, S., Khaychuk, V., Turunen, H. T., Carvalho, L. S., Andres-Mateos, E., … Vandenberghe, L. H. (2015). An effective gene therapy vector produced by reconstructing the evolutionary lineage of viruses through computer simulation. (In Silico Reconstruction of the Viral Evolutionary Lineage Yields a Potent Gene Therapy Vector.) Cell reports, 12 (6), 1056 to 1068. doi:10.1016/j.celrep.2015.07.019
本專利或申請案檔案含有至少一個彩製圖式。在申請且支付必要費用後,智權局將提供具有彩色圖式之本專利或專利申請公開案之複本。 圖 1A 至 1W為莖環結構之圖像,該等莖環結構含有嵌入內源性 (E)-miR-30 微小 RNA 支架中的 Grik2mRNA 靶向反義序列 GI (SEQ ID NO: 16) 或其變體。莖環結構含有:從 5' 到 3,引導股,其含有 GI 反義序列或其經合理設計的變體 (SEQ ID NO: 17 至 SEQ ID NO: 30、SEQ ID NO: 230 至 SEQ ID NO: 233 以及 SEQ ID NO: 242 至 SEQ ID NO: 245);E-miR-30 環序列;及隨從序列 (SEQ ID NO: 31) 或其經合理設計的變體 (SEQ ID NO: 32 至 SEQ ID NO: 45、SEQ ID NO: 234 至 SEQ ID NO: 237 以及 SEQ ID NO: 246 至 SEQ ID NO: 249)。起始構建體 (構建體 A) 顯示於圖 1A 中。相對於起始構建體的變化分別顯示於圖 1B-1W。小黑點對應於 U-G 搖擺對。帶有數字的大黑點對應於實例 1 中描述的設計基準。*Drosha 及 Dicer 切割位點係基於在從起始構建體 A 獲得的小 RNA 定序資料中觀察到的最豐富之物種,該起始構建體 A 經輸送到誘導性富潛能幹細胞 (iPSC) 衍生的麩胺酸能神經元 (GlutaNeuron) 中。 圖 2A 至 2Q為莖環結構之圖像,該等莖環結構含有嵌入內源性 E-miR-124-3 微小 RNA 支架中的 Grik2mRNA 靶向反義序列 G9 (SEQ ID NO: 63) 或其變體。莖環結構含有:引導股,其含有 G9 反義序列或其經合理設計的變體 (SEQ ID NO: 64 至 SEQ ID NO: 79);E-miR-124-3 環序列;及隨從序列 (SEQ ID NO: 80) 或其經合理設計的變體 (SEQ ID NO: 81 至 SEQ ID NO: 96]。起始構建體 (構建體 B) 顯示於圖 2A 中。相對於起始構建體的變化分別顯示於圖 2B-2Q。顯示於圖 2A 至 2I 中之構建體的特徵為莖環結構,其含有:從 5' 到 3',隨從股、環序列及引導股;而顯示於圖 2J 至 2Q 中之構建體的特征為莖環結構,其含有:從 5' 到 3',引導股、環序列及隨從股。小黑點對應於 U-G 搖擺對。帶有數字的大黑點對應於實例 1 中描述的設計基準。*Drosha 及 Dicer 切割位點係基於在從起始構建體 A 獲得的小 RNA 定序資料中觀察到的最豐富之物種,該起始構建體 B 經輸送到 GlutaNeuron 中。 圖 3A 至 3L為莖環結構之圖像,該等莖環結構含有嵌入內源性 E-miR-124-3 微小 RNA 支架中的 Grik2mRNA 靶向反義序列 MW (SEQ ID NO: 109) 或其變體。莖環結構含有:從 5' 到 3',隨從序列 (SEQ ID NO: 121) 或其經合理設計的變體 (SEQ ID NO: 122 至 SEQ ID NO: 132);E-miR-124-3環序列;及引導股,其含有 MW 反義序列或其經合理設計的變體 (SEQ ID NO: 110-120)。起始構建體 (構建體 C) 顯示於圖 3A 中。相對於起始構建體的變化分別顯示於圖 3B-3L。小黑點對應於 U-G 搖擺對。帶有數字的大黑點對應於實例 1 中描述的設計基準。*Drosha 及 Dicer 切割位點係基於在從起始構建體 A 獲得的小 RNA 定序資料中觀察到的最豐富之物種,該起始構建體 C 經輸送到 GlutaNeuron 中。 圖 4A 至 4F為莖環結構之圖像,該等莖環結構含有嵌入內源性 (E)-miR-218-1 微小 RNA 支架中的 Grik2mRNA 靶向反義序列 MW (SEQ ID NO: 139) 或其變體。莖環結構含有:從 5' 到 3,引導股,其含有 MW 反義序列或其經合理設計的變體 (SEQ ID NO: 140 至 SEQ ID NO: 144);E-miR-218-1 環序列;及隨從序列 (SEQ ID NO: 145) 或其經合理設計的變體 (SEQ ID NO: 146-150)。起始構建體 (構建體 D) 顯示於圖 4A 中。相對於起始構建體的變化分別顯示於圖 4B-4F。小黑點對應於 U-G 搖擺對。帶有數字的大黑點對應於實例 1 中描述的設計基準。*Drosha 及 Dicer 切割位點係基於在從起始構建體 A 獲得的小 RNA 定序資料中觀察到的最豐富之物種,該起始構建體 D 經輸送到 GlutaNeuron 中。 圖 5A 至 5E為含有本揭露之單微小 RNA 構建體的 AAV 表現構建體之圖像。一般構建體架構的特徵為:從 5' 到 3',AAV 5' ITR;hSyn1 啟動子序列;莖環序列,其含有:從 5' 到 3',5' 微小 RNA 側翼序列、含有引導股或隨從股序列的 5' 莖環臂、微小 RNA (E-miR) 環序列、含有隨從股或引導股序列的 3' 莖環臂、及 3' 側翼序列;多腺苷酸化序列 (RGB polyA);以及 AAV 3' ITR (圖 5A)。圖 5B 顯示一種 AAV 載體,構建體 #102,其含有構建體 #3 之莖環序列 (SEQ ID NO: 4) 中重建。圖 5C 顯示一種 AAV 載體,構建體 #103,其含有構建體 #51 之莖環序列 (SEQ ID NO: 135) 中重建。圖 5D 顯示一種 AAV 載體,其含有構建體 #39 之莖環序列 (SEQ ID NO: 98) 中重建。圖 5E 顯示一種 AAV 載體,其含有構建體 #40 之莖環序列 (SEQ ID NO: 99) 中重建。 圖 6A 及 6B為含有本揭露之多聯體 (concatemer) 構建體的 AAV 表現構建體之圖像。圖 6A 顯示一種雙微小 RNA AAV 載體,構建體 #100,其含有構建體 #3 之莖環序列 (SEQ ID NO: 4) 及構建體 #51 (SEQ ID NO: 135),其中構建體 #3 定位在相對於構建體 #51 之 5'。圖 6B 顯示一種多聯體 AAV 載體,其含有構建體 #3 之莖環序列 (SEQ ID NO: 4) 及構建體 #51 (SEQ ID NO: 135),其中構建體 #3 定位在相對於構建體 #51 之 3'。 圖 7為圖,其描繪在經如實例 3 所示轉染的 SH-SY5Y 細胞中人類 Grik2 mRNA 之相對表現水平,如藉由 RT-qPCR 所定量的。對於全部群組,n = 4。單因數變異數分析,Dunnett 氏多重比較檢驗 (相對於 siNegative)。**p < 0.001;誤差線:標準偏差。檢索表:RNAiMAX = 僅轉染試劑;siNegative = siRNA 陰性對照;siPositive = siRNA 陽性對照;A、C、D = 分別為構建體 A、C 及 D;#1、#2、#3、#4、#39、#40、#50 及 #51 = 分別為構建體 #1、#2、#3、#4、#39、#40、#50 及 #51。 圖 8A及 8B為分別顯示用 AAV 載體轉導後小鼠皮質神經元 (MCN) 中 miRNA GI 及 MW 之表現以及 GLUK2 蛋白水平的圖。圖 8A 顯示藉由莖環 RT-qPCR 進行的 GI 及 MW 定量。y 軸表示在用 AAV 載體轉導的細胞中表現的每 10 pg 總 RNA 之 GI 或 MW miRNA 分子數量:從左到右,RNA 無效載體 (Ctrl);雙 miRNA 多聯體;構建體 #100 (Seq ID: 256),其含有構建體 #3 之莖環序列 (SEQ ID NO: 4),該莖環序列定位在相對於構建體 #51 (SEQ ID NO: 135) 之 5';雙 miRNA 多聯體;構建體 #101 (SEQ ID: 257),其含有構建體 #51 之莖環序列,該莖環序列定位在相對於構建體 #3 之 5';單構建體,其僅含有 GI 序列 (SEQ ID NO: 252);以及單構建體,其僅含有 MW 序列 (SEQ ID NO: 253) 中重建。圖 8B 顯示藉由免疫墨點法來定量的 GLUK2 蛋白水平。對照孔用 AAV9.hSyn.GFP、RNA 無效對照載體處理或未處理。該圖顯示在各條件下,歸一化為 β-肌動蛋白的 GLUK2/GLUK3 表現與 AAV9.hSyn.GFP 對照相比的倍數變化。** P<0.01。 圖 9為圖,其顯示在用 RNA 無效載體 (Ctrl) 或編碼雙 miRNA 多聯體的 AAV 轉導後,在 iPSC 衍生的 GlutaNeuron 細胞中,藉由 RNA 定序來定量的 Grik2mRNA 表現,該 AAV 亦即構建體 #100 (SEQ ID NO: 256),其含有構建體 #3 之莖環序列 (SEQ ID NO: 4),該莖環序列定位在相對於構建體 #51 (SEQ ID NO: 135) 中重建。TPM,每百萬份之轉錄本。**FDR (P adj) < 0.01。 圖 10A及 10B為顯示來自兩名顳葉癲癇 (TLE) 患者的相鄰人腦切片之癲癇樣活動的圖。一名患者之腦切片是在過度興奮的情況下記錄的,另一名患者之腦切片是在生理條件下記錄的。圖 10A 顯示在 4-AP/gabazine 存在下記錄的來自 TLE 患者的相鄰器官型海馬切片。該圖之左側顯示在藉由對照載體 (AAV9.hSyn.GFP) 轉導後記錄的發作事件之原始軌跡。該圖之右側顯示描繪在用構建體 #100 (AAV9.hSyn. 構建體 #3/構建體 #51;SEQ ID NO: 256) 轉導後的癲癇狀放電之原始軌跡。相較於對照,構建體 #100 顯著抑制離體 TLE 海馬迴在過度興奮條件下的自發性癲癇發作。圖 10B 顯示來自另一名 TLE 患者的器官型海馬切片之神經元興奮性;此等切片是在生理條件下記錄的,以記錄在使用 RNA 無效對照及構建體 #100 轉導後的自發性癲癇發作活動。相較於對照,構建體 #100 顯著抑制離體 TLE 海馬迴在生理緩衝條件下的自發性癲癇發作。 圖 11A 至 11C為描繪毛果芸香鹼小鼠模型中癲癇相關表型之行為評估的圖。慢性癲癇小鼠用 RNA 無效對照載體 (Ctrl) 或構建體 #100 (SEQ ID NO: 256)、構建體 #101 (SEQ ID NO: 257)、僅含有包含 GI 序列 (SEQ ID NO: 252) 的單構建體以及僅含有 MW 序列 (SEQ ID NO: 253) 的單構建體治療 (n=5),全部以 1E+9 GC/大腦施加。*p<0.05,**p<0.01,Mann-Whitney 檢驗。多聯體載體,亦即構建體 #100 及構建體 #101,可在活體內有效改善毛果芸香鹼模型中的癲癇相關表型。圖 11A 顯示慢性癲癇小鼠在開闊場地箱中探索 10 分鐘期間覆蓋的總距離。相對於非癲癇小鼠,癲癇小鼠過度活躍且行進大約兩倍之距離。據此,用多聯體載體治療的小鼠表現得更像非癲癇小鼠,並且在治療後行進的距離更短。圖 11B 顯示用 RNA 無效對照、第一多聯體構建體 #100 或第二多聯體構建體 #101 治療的慢性癲癇小鼠的平均每日癲癇發作次數。圖 11C 顯示基於五種動物行為 (築巢、搖晃、梳毛、處理及運動) 的行為評分。Y 軸表示五種行為的評分之和。對照代表用對照載體治療的癲癇小鼠。用構建體 #100 治療的小鼠表現出與正常之非癲癇小鼠相似的行為。 圖 12A及 12B為用以下治療的毛果芸香鹼小鼠之行進距離或癲癇發作活動的圖:RNA 無效對照載體 (Ctrl) 或頭件套 #100 (SEQ ID NO: 256) 中重建。在 1E+10 GC/腦的測試劑量下,構建體 #100 在活體內在毛果芸香鹼小鼠模型中有效降低過度運動表型及癲癇發作活動。圖 12A 顯示慢性癲癇小鼠在開闊場地箱中探索 10 分鐘期間覆蓋的總距離。用以 1E+10 GC/大腦施加的對照載體或構建體 #100 治療慢性癲癇小鼠。****p<0.0001,Mann-Whitney 檢驗。圖 12B 顯示慢性癲癇小鼠在用對照載體或構建體 #100 治療後一個月的平均每日癲癇發作次數。**p<0.01,Mann-Whitney 檢驗。 圖 13A及 13B為描繪用構建體 #100 治療的毛果芸香鹼小鼠中過度運動表型及癲癇發作之劑量依賴性降低的圖。圖 13A 顯示在開闊場地箱中探索 10 分鐘期間覆蓋的總距離。用 RNA 無效對照載體 (Ctrl) 或構建體 #100 (1E+8/ 1E+9/ 1E+10 GC/大腦) 治療慢性癲癇小鼠。**p<0.01,Mann-Whitney 檢驗。野生型小鼠 (WT) 的歷史運動活動在單獨的實驗中進行評估,但在此顯示以供比較。圖13B 顯示慢性癲癇小鼠在用對照載體或構建體 #100 治療後的平均每日癲癇發作次數。 圖 14為載體圖譜之圖像,其包括構建體 #100 之抑制性多核苷酸序列。雖然構建體 #100 包括 lac 啟動子序列、胺苄青黴素抗性 (AmpR) 啟動子序列及康黴素抗性 (KanR) 序列,但可以包括其他啟動子及抗生素抗性序列 (例如,氯黴素抗性序列) 作為替代方案。 This patent or application file contains at least one drawing executed in color. Upon application and payment of the necessary fees, the Intellectual Property Office will provide a copy of this patent or patent application publication with a color drawing. Figures 1A to 1W are images of stem-loop structures containing the Grik2 mRNA-targeting antisense sequence GI (SEQ ID NO: 16) embedded in an endogenous (E)-miR-30 microRNA scaffold or its variations. The stem-loop structure contains: from 5' to 3, the guide strand, which contains the GI antisense sequence or a rationally designed variant thereof (SEQ ID NO: 17 to SEQ ID NO: 30, SEQ ID NO: 230 to SEQ ID NO : 233 and SEQ ID NO: 242 to SEQ ID NO: 245); E-miR-30 loop sequence; and follower sequence (SEQ ID NO: 31) or rationally designed variants thereof (SEQ ID NO: 32 to SEQ ID NO: 45, SEQ ID NO: 234 to SEQ ID NO: 237 and SEQ ID NO: 246 to SEQ ID NO: 249). The starting construct (Construct A) is shown in Figure 1A. Changes relative to the starting construct are shown in Figures 1B-1W respectively. The small black dots correspond to the UG swing pairs. The large black dots with numbers correspond to the design basis described in Example 1. *Drosha and Dicer cleavage sites are based on the most abundant species observed in small RNA sequencing data obtained from starting construct A that was delivered to induced potentiated stem cells (iPSC) for derivation of glutamatergic neurons (GlutaNeuron). Figures 2A through 2Q are images of stem-loop structures containing the Grik2 mRNA-targeting antisense sequence G9 (SEQ ID NO: 63) embedded in the endogenous E-miR-124-3 microRNA scaffold or its variations. The stem-loop structure contains: a guide strand, which contains the G9 antisense sequence or a rationally designed variant thereof (SEQ ID NO: 64 to SEQ ID NO: 79); the E-miR-124-3 loop sequence; and the follower sequence ( SEQ ID NO: 80) or rationally designed variants thereof (SEQ ID NO: 81 to SEQ ID NO: 96]. The starting construct (Construct B) is shown in Figure 2A. Relative to the starting construct The changes are shown in Figures 2B-2Q, respectively. The constructs shown in Figures 2A to 2I are characterized by a stem-loop structure containing: from 5' to 3', a follower strand, a loop sequence and a leader strand; and that shown in Figure 2J The construct in 2Q is characterized by a stem-loop structure, which contains: from 5' to 3', the leader strand, the loop sequence and the follower strand. The small black dots correspond to the UG swing pairs. The large black dots with numbers correspond to Design baseline described in Example 1. *Drosha and Dicer cleavage sites were based on the most abundant species observed in small RNA sequencing data obtained from starting construct A, which was delivered to GlutaNeuron Center. Figures 3A to 3L are images of stem-loop structures containing the Grik2 mRNA-targeting antisense sequence MW (SEQ ID NO: 109) embedded in the endogenous E-miR-124-3 microRNA scaffold. ) or a variant thereof. The stem-loop structure contains: from 5' to 3', the following sequence (SEQ ID NO: 121) or its rationally designed variant (SEQ ID NO: 122 to SEQ ID NO: 132); E -miR-124-3 loop sequence; and a guide strand containing the MW antisense sequence or a rationally designed variant thereof (SEQ ID NO: 110-120). The starting construct (Construct C) is shown in Figure 3A Center. Changes relative to the starting construct are shown in Figures 3B-3L, respectively. Small black dots correspond to UG swing pairs. Large black dots with numbers correspond to the design baseline described in Example 1. *Drosha and Dicer cutting sites Points are based on the most abundant species observed in small RNA sequencing data obtained from starting construct A, which was delivered into GlutaNeuron. Figures 4A to 4F are images of stem-loop structures. The stem-loop structures contain the Grik2 mRNA-targeting antisense sequence MW (SEQ ID NO: 139) or a variant thereof embedded in an endogenous (E)-miR-218-1 microRNA scaffold. The stem-loop structures contain: from 5' to 3, guide strand, which contains the MW antisense sequence or a rationally designed variant thereof (SEQ ID NO: 140 to SEQ ID NO: 144); the E-miR-218-1 loop sequence; and the follower sequence ( SEQ ID NO: 145) or rationally designed variants thereof (SEQ ID NO: 146-150). The starting construct (Construct D) is shown in Figure 4A. Changes relative to the starting construct are shown in Figures 4B-4F respectively. The small black dots correspond to the UG swing pairs. The large black dots with numbers correspond to the design basis described in Example 1. *Drosha and Dicer cleavage sites are based on the most abundant species observed in small RNA sequencing data obtained from starting construct A, which was delivered into GlutaNeuron. Figures 5A to 5E are images of AAV expression constructs containing single microRNA constructs of the present disclosure. The general construct architecture is characterized by: from 5' to 3', the AAV 5'ITR; the hSyn1 promoter sequence; the stem-loop sequence, which contains: from 5' to 3', the 5' microRNA flanking sequence, containing the guide strand or 5' stem-loop arm of the follower strand sequence, microRNA (E-miR) loop sequence, 3' stem-loop arm containing the follower strand or leader strand sequence, and 3' flanking sequence; polyadenylation sequence (RGB polyA); and the AAV 3′ ITR (Fig. 5A ). Figure 5B shows an AAV vector, construct #102, reconstituted with the stem-loop sequence of construct #3 (SEQ ID NO: 4). Figure 5C shows an AAV vector, construct #103, reconstituted with the stem-loop sequence of construct #51 (SEQ ID NO: 135). Figure 5D shows an AAV vector containing a reconstruction of the stem-loop sequence of construct #39 (SEQ ID NO: 98). Figure 5E shows an AAV vector reconstructed from the stem-loop sequence of construct #40 (SEQ ID NO: 99). Figures 6A and 6B are images of AAV expression constructs containing concatemer constructs of the present disclosure. Figure 6A shows a dual microRNA AAV vector, construct #100, which contains the stem-loop sequence of construct #3 (SEQ ID NO: 4) and construct #51 (SEQ ID NO: 135), where construct #3 Positioned at 5' relative to construct #51. Figure 6B shows a concatemer AAV vector containing the stem-loop sequence of construct #3 (SEQ ID NO: 4) and construct #51 (SEQ ID NO: 135), where construct #3 is positioned relative to construct Body #51 of 3'. Figure 7 is a graph depicting the relative expression levels of human Grik2 mRNA in SH-SY5Y cells transfected as shown in Example 3, as quantified by RT-qPCR. n = 4 for all cohorts. One-way analysis of variance, Dunnett's multiple comparison test (relative to siNegative). **p <0.001; error bars: standard deviation. Search table: RNAiMAX = transfection reagent only; siNegative = siRNA negative control; siPositive = siRNA positive control; A, C, D = constructs A, C, and D respectively; #1, #2, #3, #4, #39, #40, #50 and #51 = Constructs #1, #2, #3, #4, #39, #40, #50 and #51 respectively. Figures 8A and 8B are graphs respectively showing the expression of miRNA GI and MW and GLUK2 protein levels in mouse cortical neurons (MCN) after transduction with AAV vectors. Figure 8A shows GI and MW quantification by stem-loop RT-qPCR. The y-axis represents the number of GI or MW miRNA molecules per 10 pg of total RNA expressed in cells transduced with AAV vectors: from left to right, RNA null vector (Ctrl); double-miRNA concatemer; construct #100 ( Seq ID: 256), which contains the stem-loop sequence of construct #3 (SEQ ID NO: 4), which is located 5' relative to construct #51 (SEQ ID NO: 135); dual-miRNA poly Conjoint; Construct #101 (SEQ ID: 257), which contains the stem-loop sequence of Construct #51, which is positioned 5' relative to Construct #3; Single construct, which contains only the GI sequence (SEQ ID NO: 252); and a single construct containing only the MW sequence (SEQ ID NO: 253). Figure 8B shows GLUK2 protein levels quantified by immunoblotting. Control wells were treated with AAV9.hSyn.GFP, RNA null control vector or untreated. The graph shows the fold change in GLUK2/GLUK3 performance normalized to β-actin compared to the AAV9.hSyn.GFP control under each condition. **P<0.01. Figure 9 is a graph showing Grik2 mRNA expression quantified by RNA sequencing in iPSC-derived GlutaNeuron cells after transduction with an RNA null vector (Ctrl) or an AAV encoding a dual-miRNA concatemer. That is, construct #100 (SEQ ID NO: 256), which contains the stem-loop sequence of construct #3 (SEQ ID NO: 4) positioned relative to construct #51 (SEQ ID NO: 135 ) is rebuilt. TPM, transcripts per million. **FDR (P adj) < 0.01. Figures 10A and 10B are graphs showing epileptiform activity in adjacent human brain slices from two patients with temporal lobe epilepsy (TLE). Brain slices from one patient were recorded under hyperexcitable conditions and from another patient under physiological conditions. Figure 10A shows adjacent organotypic hippocampal slices from a TLE patient recorded in the presence of 4-AP/gabazine. The left side of the figure shows the original trace of seizure events recorded after transduction with a control vector (AAV9.hSyn.GFP). The right side of the figure shows the original trajectory depicting epileptiform discharges after transduction with Construct #100 (AAV9.hSyn. Construct #3/Construct #51; SEQ ID NO: 256). Construct #100 significantly inhibited spontaneous seizures in isolated TLE hippocampal gyrus under hyperexcitable conditions compared to control. Figure 10B shows neuronal excitability in organotypic hippocampal slices from another TLE patient; these slices were recorded under physiological conditions to document spontaneous epilepsy after transduction with RNA null control and construct #100 Paroxysmal activity. Construct #100 significantly inhibited spontaneous seizures in isolated TLE hippocampus under physiological buffer conditions compared to control. Figures 11A - 11C are graphs depicting behavioral assessment of epilepsy-related phenotypes in a pilocarpine mouse model. Chronic epilepsy mice with RNA null control vector (Ctrl) or construct #100 (SEQ ID NO: 256), construct #101 (SEQ ID NO: 257), containing only the GI sequence (SEQ ID NO: 252) Single construct and single construct treatments (n=5) containing only the MW sequence (SEQ ID NO: 253), all administered at 1E+9 GC/brain. *p<0.05, **p<0.01, Mann-Whitney test. The concatemer vectors, construct #100 and construct #101, effectively ameliorated epilepsy-related phenotypes in the pilocarpine model in vivo. Figure 11A shows the total distance covered by chronic epileptic mice during 10 min of exploration in the open field box. Relative to non-epileptic mice, epileptic mice were hyperactive and traveled approximately twice as far. According to this, mice treated with the concatemer vector behaved more like non-epileptic mice and traveled shorter distances after treatment. Figure 11B shows the average number of daily seizures in chronic epileptic mice treated with RNA null control, first concatemer construct #100, or second concatemer construct #101. Figure 11C shows behavioral scores based on five animal behaviors (nesting, rocking, grooming, handling, and locomotion). The Y-axis represents the sum of the ratings for the five behaviors. Controls represent epileptic mice treated with control vehicle. Mice treated with Construct #100 exhibited behaviors similar to normal, non-epileptic mice. Figures 12A and 12B are graphs of distance traveled or seizure activity in pilocarpine mice treated with: RNA null control vector (Ctrl) or reconstruction in Headset #100 (SEQ ID NO: 256). At doses tested at 1E+10 GC/brain, Construct #100 effectively reduced the hyperlocomotion phenotype and seizure activity in the pilocarpine mouse model in vivo. Figure 12A shows the total distance covered by chronic epileptic mice during 10 min of exploration in the open field box. Chronic epileptic mice were treated with control vector or construct #100 administered at 1E+10 GC/brain. ****p<0.0001, Mann-Whitney test. Figure 12B shows the average number of daily seizures in chronic epileptic mice one month after treatment with control vehicle or construct #100. **p<0.01, Mann-Whitney test. Figures 13A and 13B are graphs depicting dose-dependent reductions in hyperlocomotion phenotype and seizures in pilocarpine mice treated with Construct #100. Figure 13A shows the total distance covered during 10 minutes of exploration in the open field box. Chronic epileptic mice were treated with RNA null control vector (Ctrl) or construct #100 (1E+8/ 1E+9/ 1E+10 GC/brain). **p<0.01, Mann-Whitney test. Historical locomotor activity of wild-type mice (WT) was assessed in separate experiments but is shown here for comparison. Figure 13B shows the average number of seizures per day in chronic epileptic mice after treatment with control vehicle or Construct #100. Figure 14 is an image of a vector map including the inhibitory polynucleotide sequence of construct #100. Although construct #100 includes the lac promoter sequence, the ampicillin resistance (AmpR) promoter sequence, and the konmycin resistance (KanR) sequence, other promoters and antibiotic resistance sequences may be included (e.g., chloramphenicol resistance sequences) as an alternative.
TW202346585A_112100490_SEQL.xmlTW202346585A_112100490_SEQL.xml
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Application Number | Priority Date | Filing Date | Title |
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WOPCT/US22/29452 | 2022-05-16 | ||
PCT/US2022/029452 WO2022245734A2 (en) | 2021-05-17 | 2022-05-16 | Methods and compositions for treating epilepsy |
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