JP7571347B2 - CLEC12a結合性ポリペプチド及びその使用 - Google Patents
CLEC12a結合性ポリペプチド及びその使用 Download PDFInfo
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- JP7571347B2 JP7571347B2 JP2021564747A JP2021564747A JP7571347B2 JP 7571347 B2 JP7571347 B2 JP 7571347B2 JP 2021564747 A JP2021564747 A JP 2021564747A JP 2021564747 A JP2021564747 A JP 2021564747A JP 7571347 B2 JP7571347 B2 JP 7571347B2
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Description
本願は、2019年5月4日付で出願された米国仮出願第62/843,411号及び2019年5月7日付で出願された米国仮出願第62/844,426号の優先権の利益を主張し、それぞれの全体があらゆる目的で引用することにより本明細書の一部をなす。
実施の形態2. 少なくとも1つのVHHドメインは、配列番号47又は配列番号23のアミノ酸配列を含むCDR1と、配列番号48又は配列番号24のアミノ酸配列を含むCDR2と、配列番号49又は配列番号25のアミノ酸配列を含むCDR3とを含む、実施の形態1のポリペプチド。
実施の形態3. 少なくとも1つのVHHドメインは、配列番号32又は配列番号3のアミノ酸配列を含むCDR1と、配列番号33又は配列番号4のアミノ酸配列を含むCDR2と、配列番号34又は配列番号5のアミノ酸配列を含むCDR3とを含む、実施の形態1又は実施の形態2のポリペプチド。
実施の形態4. 少なくとも1つのVHHドメインは、配列番号7又は配列番号35のアミノ酸配列を含むCDR1と、配列番号8又は配列番号36のアミノ酸配列を含むCDR2と、配列番号9又は配列番号37のアミノ酸配列を含むCDR3とを含む、実施の形態1~3のいずれか1つのポリペプチド。
実施の形態5. 少なくとも1つのVHHドメインは、配列番号11又は配列番号38のアミノ酸配列を含むCDR1と、配列番号12又は配列番号39のアミノ酸配列を含むCDR2と、配列番号13又は配列番号40のアミノ酸配列を含むCDR3とを含む、実施の形態1~4のいずれか1つのポリペプチド。
実施の形態6. 少なくとも1つのVHHドメインは、配列番号15又は配列番号41のアミノ酸配列を含むCDR1と、配列番号16又は配列番号42のアミノ酸配列を含むCDR2と、配列番号17又は配列番号43のアミノ酸配列を含むCDR3とを含む、実施の形態1~5のいずれか1つのポリペプチド。
実施の形態7. 少なくとも1つのVHHドメインは、配列番号19又は配列番号44のアミノ酸配列を含むCDR1と、配列番号20又は配列番号45のアミノ酸配列を含むCDR2と、配列番号21又は配列番号46のアミノ酸配列を含むCDR3とを含む、実施の形態1~6のいずれか1つのポリペプチド。
実施の形態8. 少なくとも1つのVHHドメインは、それぞれ配列番号32、配列番号33、及び配列番号34;配列番号47、配列番号48、及び配列番号49;配列番号3、配列番号4、及び配列番号5;配列番号7、配列番号8、及び配列番号9;配列番号11、配列番号12、及び配列番号13;配列番号15、配列番号16、及び配列番号17;配列番号19、配列番号20、及び配列番号21;配列番号23、配列番号24、及び配列番号25;配列番号35、配列番号36、及び配列番号37;配列番号38、配列番号39、及び配列番号40;配列番号41、配列番号42、及び配列番号43;配列番号44、配列番号45、及び配列番号46のアミノ酸配列を含むCDR1、CDR2、及びCDR3を含む、実施の形態1~7のいずれか1つのポリペプチド。
実施の形態9. 少なくとも1つのVHHドメインは、ヒト化されている、実施の形態1~8のいずれか1つのポリペプチド。
実施の形態10. 少なくとも1つのVHHドメインは、配列番号26、配列番号94、配列番号31、配列番号99、配列番号27、配列番号28、配列番号29、配列番号30、配列番号95、配列番号96、配列番号97、又は配列番号98のアミノ酸配列と少なくとも85%、少なくとも90%、少なくとも95%、又は少なくとも99%同一であるアミノ酸配列を含む、実施の形態1~9のいずれか1つのポリペプチド。
実施の形態11. 少なくとも1つのVHHドメインは、配列番号26、配列番号94、配列番号31、配列番号99、配列番号27、配列番号28、配列番号29、配列番号30、配列番号95、配列番号96、配列番号97、又は配列番号98のアミノ酸配列を含む、実施の形態1~9のいずれか1つのポリペプチド。
実施の形態12. 少なくとも1つのVHHドメインは、配列番号2、配列番号6、配列番号10、配列番号14、配列番号18、配列番号22、配列番号88、配列番号89、配列番号90、配列番号91、配列番号92、又は配列番号93のアミノ酸配列と少なくとも85%、少なくとも90%、少なくとも95%、又は少なくとも99%同一であるアミノ酸配列を含む、実施の形態1~8のいずれか1つのポリペプチド。
実施の形態13. 少なくとも1つのVHHドメインは、配列番号2、配列番号6、配列番号10、配列番号14、配列番号18、配列番号22、配列番号88、配列番号89、配列番号90、配列番号91、配列番号92、又は配列番号93のアミノ酸配列を含む、実施の形態1~8のいずれか1つのポリペプチド。
実施の形態14. 2つのVHHドメインを含む、実施の形態1~13のいずれか1つのポリペプチド。
実施の形態15. 3つのVHHドメインを含む、実施の形態1~13のいずれか1つのポリペプチド。
実施の形態16. ポリペプチドは、CLEC12a以外の抗原に結合する少なくとも1つの結合ドメインを含む、実施の形態1~15のいずれか1つのポリペプチド。
実施の形態17. ポリペプチドは、CD3、T細胞受容体(TCR)α、TCRβ、CD28、CD16、CD32A、CD64、CD89、NKp46、又はNKG2Dに結合する少なくとも1つの結合ドメインを含む、実施の形態16のポリペプチド。
実施の形態18. 各VHHドメインは、CLEC12aに結合する、実施の形態14又は15のポリペプチド。
実施の形態19. 各VHHドメインは、同じCDR1、CDR2、及びCDR3のアミノ酸配列を含む、実施の形態18のポリペプチド。
実施の形態20. 各VHHドメインは、同じVHH配列を含む、実施の形態18のポリペプチド。
実施の形態21. 1つのVHHドメインを含む、実施の形態1~13のいずれか1つのポリペプチド。
実施の形態22. ポリペプチドは、Fc領域を含む、実施の形態1~21のいずれか1つのポリペプチド。
実施の形態23. Fc領域は、配列番号50~配列番号85から選択されるアミノ酸配列を含む、実施の形態22のポリペプチド。
実施の形態24. 生理学的条件下で二量体を形成する、実施の形態22又は実施の形態23のポリペプチド。
実施の形態25. CLEC12aは、ヒトCLEC12aである、実施の形態1~24のいずれか1つのポリペプチド。
実施の形態26. ヒトCLEC12aは、配列番号1の配列を含む、実施の形態25のポリペプチド。
実施の形態27. 実施の形態1~26のいずれか1つのポリペプチドと、細胞傷害性作用物質とを含む免疫複合体。
実施の形態28. 細胞傷害性作用物質は、カリケアマイシン、アウリスタチン、ドラスタチン、チューブリシン、メイタンシノイド、クリプトフィシン、デュオカルマイシン、エスペラマイシン、ピロロベンゾジアゼピン、及びエンジイン抗生物質から選択される、実施の形態27の免疫複合体。
実施の形態29. 実施の形態1~26のいずれか1つのポリペプチド又は実施の形態27若しくは実施の形態28の免疫複合体と、薬学的に許容可能な担体とを含む医薬組成物。
実施の形態30. 実施の形態1~26のいずれか1つのポリペプチドをコードする単離された核酸。
実施の形態31. 実施の形態30の核酸を含むベクター。
実施の形態32. 実施の形態34の核酸又は実施の形態31のベクターを含む宿主細胞。
実施の形態33. 実施の形態1~26のいずれか1つのポリペプチドを発現する宿主細胞。
実施の形態34. 実施の形態1~26のいずれか1つのポリペプチドを生産する方法であって、ポリペプチドの発現に適した条件下で実施の形態32又は実施の形態33の宿主細胞をインキュベートすることを含む、方法。
実施の形態35. ポリペプチドを単離することを更に含む、実施の形態34の方法。
実施の形態36. 癌を治療する方法であって、癌を伴う被験体に実施の形態1~26のいずれか1つのポリペプチド、実施の形態27若しくは実施の形態28の免疫複合体、又は実施の形態29の医薬組成物を薬学的有効量、投与することを含む、方法。
実施の形態37. 癌は、リンパ腫、ホジキンリンパ腫、非ホジキンリンパ腫、B細胞リンパ腫、低悪性度/濾胞性非ホジキンリンパ腫(NHL)、小リンパ球(SL)NHL、中悪性度/濾胞性NHL、中悪性度びまん性NHL、高悪性度免疫芽球性NHL、高悪性度リンパ芽球性NHL、高悪性度小型非分割細胞NHL、巨大病変NHL、マントル細胞リンパ腫、AIDS関連リンパ腫、ワルデンストレームマクログロブリン血症、慢性リンパ球性白血病(CLL)、急性リンパ芽球性白血病(ALL)、急性骨髄性白血病(AML)、有毛細胞白血病、及び慢性骨髄芽球性白血病から選択される、実施の形態36の方法。
実施の形態38. 癌は、急性骨髄性白血病(AML)である、実施の形態36又は37の方法。
実施の形態39. 追加の療法剤を投与することを更に含む、実施の形態36~38のいずれか1つの方法。
実施の形態40. 追加の療法剤は、抗癌剤である、実施の形態39の方法。
実施の形態41. 抗癌剤は、化学療法剤、抗癌生物製剤、放射線療法、CAR-T療法薬、及び腫瘍溶解性ウイルスから選択される、実施の形態40の方法。
実施の形態42. 癌は、CLEC12aを発現する癌である、実施の形態36~39のいずれか1つの方法。
本明細書に使用されるセクションの見出しは編成のみを目的とし、記載される主題を限定すると解釈されるものではない。
(1)疎水性:ノルロイシン、Met、Ala、Val、Leu、Ile、
(2)中性親水性:Cys、Ser、Thr、Asn、Gln、
(3)酸性:Asp、Glu、
(4)塩基性:His、Lys、Arg、
(5)鎖の配向に影響する残基:Gly、Pro、
(6)芳香族:Trp、Tyr、Phe。
本明細書において、CLEC12a結合性ポリペプチドが提供される。様々な実施形態において、CLEC12a結合性ポリペプチドは、CLEC12aに結合する少なくとも1つのVHHドメインを含む。幾つかの実施形態において、CLEC12aはヒトCLEC12aである。幾つかの実施形態において、CLEC12a結合性ポリペプチドは、リガンドへのCLEC12aの結合を遮断する。幾つかの実施形態において、本明細書で提供されるCLEC12a結合性ポリペプチドは、CLEC12aに結合する1つ、2つ、3つ、4つ、5つ、6つ、7つ、又は8つのVHHドメインを含む。幾つかの実施形態において、本明細書で提供されるCLEC12a結合性ポリペプチドは、CLEC12aに結合する1つ、2つ、3つ、又は4つのVHHドメインを含む。CLEC12a結合性ポリペプチドは、CLEC12a以外の1つ以上の標的タンパク質に結合する1つ以上のVHHドメインを含み得る。そのようなポリペプチドは、「多重特異性」ポリペプチドと呼称され得る。
様々な実施形態において、CLEC12aに結合するVHHドメインは、配列番号3、配列番号7、配列番号11、配列番号15、配列番号19、配列番号23、配列番号32、配列番号35、配列番号38、配列番号41、配列番号44、及び配列番号47から選択されるCDR1配列と、配列番号4、配列番号8、配列番号12、配列番号16、配列番号20、配列番号24、配列番号33、配列番号36、配列番号39、配列番号42、配列番号45、及び配列番号48から選択されるCDR2配列と、配列番号5、配列番号9、配列番号13、配列番号17、配列番号21、配列番号25、配列番号34、配列番号37、配列番号40、配列番号43、配列番号46、及び配列番号49から選択されるCDR3配列とを含む。様々な実施形態において、CLEC12aに結合するVHHドメインは、配列番号3、配列番号4、及び配列番号5;配列番号7、配列番号8、及び配列番号9;配列番号11、配列番号12、及び配列番号13;配列番号15、配列番号16、及び配列番号17;配列番号19、配列番号20、及び配列番号21;配列番号23、配列番号24、及び配列番号25;配列番号32、配列番号33、及び配列番号34;配列番号35、配列番号36、及び配列番号37;配列番号38、配列番号39、及び配列番号40;配列番号41、配列番号42、及び配列番号43;配列番号44、配列番号45、及び配列番号46;並びに配列番号47、配列番号48、及び配列番号49から選択されるCDR1配列、CDR2配列、及びCDR3配列を含む。様々な実施形態において、VHHドメインはヒト化されている。
本明細書において、本明細書で提供される1つ以上のCLEC12a結合性VHHドメインを含む細胞外ドメインを有するキメラ抗原受容体(CAR)が提供される。本明細書で提供されるCARコンストラクトは、1つ以上のCLEC12a結合性VHHドメインを含む細胞外ドメインと、膜貫通ドメインと、細胞内シグナル伝達領域とを含む。CARの抗原結合ユニットを形成する1つ以上のCLEC12a結合性VHHドメインは、このCARがCLEC12a結合を発現する細胞又は組織の標的化における治療に有用であるのに十分な親和性でCLEC12a結合に結合する又は結合することができる、すなわちこれを標的とする。
CLEC12a結合性ポリペプチドをコードするポリヌクレオチドを含む核酸分子が提供される。幾つかの実施形態において、核酸分子はまた、CLEC12a結合性ポリペプチドの分泌を指示するリーダー配列もコードすることができ、そのリーダー配列は、典型的には、これが分泌されたポリペプチド中に存在しないように切断される。リーダー配列は、天然の重鎖(又はVHH)リーダー配列であり得る、又は別の異種リーダー配列であり得る。
幾つかの実施形態において、CLEC12a結合性ポリペプチド又はCLEC12a結合性ポリペプチドを発現する細胞を投与することを含む、個体における疾患を治療する方法が提供される。幾つかの実施形態において、個体における癌を治療する方法が提供される。幾つかの実施形態において、個体におけるCLEC12aを発現する癌又はCLEC12a陽性の癌を治療する方法が提供される。該方法は、本明細書で提供されるCLEC12a結合性ポリペプチド又はCLEC12a結合性ポリペプチドを発現する細胞を有効量、個体に投与することを含む。幾つかの実施形態において、CLEC12a結合性ポリペプチドを使用して、CLEC12aを発現する細胞に細胞傷害性作用物質が導入される。幾つかのそのような実施形態において、CLEC12a結合性ポリペプチドは、細胞傷害性T細胞又はNK細胞に結合する結合ドメインを含む。幾つかのそのような実施形態において、結合ドメインは、CD3、T細胞受容体(TCR)α、TCRβ、CD28、CD16、CD32A、CD64、CD89、NKp46、又はNKG2Dに結合する。結合ドメインは、幾つかの実施形態において、VHHドメイン、又はVH/VL、scFv、Fabフラグメント等の重鎖可変領域及び軽鎖可変領域を含む抗体結合ドメインであり得る。
幾つかの実施形態において、CLEC12a結合性ポリペプチドを含む組成物は、多種多様な薬学的に許容可能な担体を含む製剤で提供される(例えば、Gennaro, Remington: The Science and Practice of Pharmacy with Facts and Comparisons: Drugfacts Plus, 20th ed. (2003)、Ansel et al., Pharmaceutical Dosage Forms and Drug Delivery Systems, 7th ed., Lippencott Williams and Wilkins (2004)、Kibbe et al., Handbook of Pharmaceutical Excipients, 3rd ed., Pharmaceutical Press (2000)を参照)。賦形剤、アジュバント、及び希釈剤を含む様々な薬学的に許容可能な担体が利用可能である。さらに、pH調整剤及び緩衝剤、張性調整剤、安定剤、湿潤剤等の様々な薬学的に許容可能な補助物質も利用可能である。非限定的な例示的な担体には、生理食塩水、緩衝生理食塩水、デキストロース、水、グリセロール、エタノール、及びそれらの組み合わせが含まれる。
本開示のCLEC12a結合性ポリペプチド又は操作された細胞は、単独で又は他の抗癌剤等の他の治療方式と組み合わせて投与され得る。CLEC12a結合性ポリペプチド又は操作された細胞は、他の治療方式の前、実質的にそれと同時に、又はその後に供給され得る(すなわち、同時に又は順次に)。幾つかの実施形態において、本明細書に記載される治療方法は、放射線療法、化学療法、ワクチン接種、標的腫瘍療法、CAR-T療法、腫瘍溶解性ウイルス療法、癌免疫療法、サイトカイン療法、外科的切除、クロマチン修飾、切除、冷却療法、腫瘍標的に対するアンチセンス剤、腫瘍標的に対するsiRNA剤、腫瘍標的に対するマイクロRNA剤若しくは抗癌剤/抗腫瘍剤、又は抗体、サイトカイン若しくは受容体細胞外ドメイン-Fc融合物等の生物製剤を施すことを更に含み得る。
幾つかの実施形態において、本明細書に記載される方法は、被験体及び/又は被験体(例えば、癌患者)からの検体を評価するのに有用である。幾つかの実施形態において、評価は、診断、予後診断、及び/又は治療への奏効のうちの1つ以上である。
本明細書に記載されるCLEC12a結合性ポリペプチドのいずれか及び適切な包装を含む製造品及びキットも提供される。幾つかの実施形態において、本発明は、(i)CLEC12a結合性ポリペプチドと、(ii)該キットを使用してCLEC12a結合性ポリペプチドを個体に投与するための使用説明書とを含むキットを含む。
ヒトCLEC12aを標的とするシングルドメイン抗体を、ヒトCLEC12a細胞外ドメインの組換え型によるラマ及びアルパカの免疫化を介して作製した。
ヒトCLEC12aへのsdAbの結合をフローサイトメトリーによって評価した。各sdAbは、以下の表4に示されるVHHドメインと、EUナンバリングによるアミノ酸Glu233、Leu234、及びLeu235が欠失されたヒトIgG1 xELLのFc領域とを含んでいた(配列番号51)。HEK293細胞を、CLEC12a(UniProtアクセッション番号Q5QGZ9.3;配列番号1)をコードするプラスミドで一過性にトランスフェクションし、陽性細胞系統として使用し、トランスフェクションされていないHEK293細胞をCLEC12a陰性細胞として使用した。各細胞型を、96ウェル丸底プレートにおいてFACSバッファー(PBS 1%BSA、0.1%NaN3 pH7.4)中で30000個の細胞/ウェルにて播種した。sdAbをFACSバッファー中で3倍の11点段階希釈において希釈した。播種した細胞にsdAb希釈物を加え、アッセイプレートを4℃で30分間インキュベートした。150μLのFACSバッファー中で2回洗浄した後に、各ウェル中の細胞を、Alexa Fluor 647結合された二次抗ヒトIgGのFACSバッファー中での1:2000希釈物100μL中に再懸濁し、4℃で30分間インキュベートした。細胞を更に2回洗浄した後に、結合された抗体をフローサイトメトリーによって検出した。
Claims (33)
- CLEC12aに結合する少なくとも1つのVHHドメインを含むポリペプチドであり、
少なくとも1つのVHHドメインは、それぞれ配列番号32、配列番号33、及び配列番号34のアミノ酸配列を含むCDR1、CDR2、及びCDR3を含む、ポリペプチド。 - 少なくとも1つのVHHドメインは、ヒト化されている、請求項1に記載のポリペプチド。
- 少なくとも1つのVHHドメインは、配列番号26、又は配列番号94のアミノ酸配列と少なくとも85%同一であるアミノ酸配列を含む、請求項1又は2に記載のポリペプチド。
- 少なくとも1つのVHHドメインは、配列番号26、又は配列番号94のアミノ酸配列を含む、請求項1~3のいずれか一項に記載のポリペプチド。
- 2つのVHHドメインを含む、請求項1~4のいずれか一項に記載のポリペプチド。
- 3つのVHHドメインを含む、請求項1~4のいずれか一項に記載のポリペプチド。
- 前記ポリペプチドは、CLEC12a以外の抗原に結合する少なくとも1つの結合ドメインを含む、請求項1~6のいずれか一項に記載のポリペプチド。
- 前記ポリペプチドは、CD3、T細胞受容体(TCR)α、TCRβ、CD28、CD16、CD32A、CD64、CD89、NKp46、又はNKG2Dに結合する少なくとも1つの結合ドメインを含む、請求項7に記載のポリペプチド。
- 各VHHドメインは、CLEC12aに結合する、請求項5又は6に記載のポリペプチド。
- 各VHHドメインは、同じCDR1、CDR2、及びCDR3のアミノ酸配列を含む、請求項9に記載のポリペプチド。
- 各VHHドメインは、同じVHH配列を含む、請求項9に記載のポリペプチド。
- 1つのVHHドメインを含む、請求項1~4のいずれか一項に記載のポリペプチド。
- 前記ポリペプチドは、Fc領域を含む、請求項1~12のいずれか一項に記載のポリペプチド。
- 前記Fc領域は、配列番号50~配列番号85から選択されるアミノ酸配列を含む、請求項13に記載のポリペプチド。
- 生理学的条件下で二量体を形成する、請求項13又は14に記載のポリペプチド。
- 前記CLEC12aは、ヒトCLEC12aである、請求項1~15のいずれか一項に記載のポリペプチド。
- 前記ヒトCLEC12aは、配列番号1の配列を含む、請求項16に記載のポリペプチド。
- 請求項1~17のいずれか一項に記載のポリペプチドと、細胞傷害性作用物質とを含む免疫複合体。
- 前記細胞傷害性作用物質は、カリケアマイシン、アウリスタチン、ドラスタチン、チューブリシン、メイタンシノイド、クリプトフィシン、デュオカルマイシン、エスペラマイシン、ピロロベンゾジアゼピン、及びエンジイン抗生物質から選択される、請求項18に記載の免疫複合体。
- 請求項1~17のいずれか一項に記載のポリペプチド又は請求項18若しくは19に記載の免疫複合体と、薬学的に許容可能な担体とを含む医薬組成物。
- 請求項1~17のいずれか一項に記載のポリペプチドをコードする単離された核酸。
- 請求項21に記載の核酸を含むベクター。
- 請求項21に記載の核酸又は請求項22に記載のベクターを含む宿主細胞。
- 請求項1~17のいずれか一項に記載のポリペプチドを発現する宿主細胞。
- 請求項1~17のいずれか一項に記載のポリペプチドを生産する方法であって、前記ポリペプチドの発現に適した条件下で請求項23又は24に記載の宿主細胞をインキュベートすることを含む、方法。
- 前記ポリペプチドを単離することを更に含む、請求項25に記載の方法。
- 請求項1~17のいずれか一項に記載のポリペプチド、又は請求項18若しくは19に記載の免疫複合体を含む、癌を治療するための医薬組成物。
- 前記癌は、リンパ腫、ホジキンリンパ腫、非ホジキンリンパ腫、B細胞リンパ腫、低悪性度/濾胞性非ホジキンリンパ腫(NHL)、小リンパ球(SL)NHL、中悪性度/濾胞性NHL、中悪性度びまん性NHL、高悪性度免疫芽球性NHL、高悪性度リンパ芽球性NHL、高悪性度小型非分割細胞NHL、巨大病変NHL、マントル細胞リンパ腫、AIDS関連リンパ腫、ワルデンストレームマクログロブリン血症、慢性リンパ球性白血病(CLL)、急性リンパ芽球性白血病(ALL)、急性骨髄性白血病(AML)、有毛細胞白血病、及び慢性骨髄芽球性白血病から選択される、請求項27に記載の医薬組成物。
- 前記癌は、急性骨髄性白血病(AML)である、請求項27又は28に記載の医薬組成物。
- 追加の療法剤と組み合わせて用いるための、請求項27~29のいずれか一項に記載の医薬組成物。
- 前記追加の療法剤は、抗癌剤である、請求項30に記載の医薬組成物。
- 前記抗癌剤は、化学療法剤、抗癌生物製剤、放射線療法、CAR-T療法薬、及び腫瘍溶解性ウイルスから選択される、請求項31に記載の医薬組成物。
- 前記癌は、CLEC12aを発現する癌である、請求項27~32のいずれか一項に記載の医薬組成物。
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