IN2015DN02987A - - Google Patents
Info
- Publication number
- IN2015DN02987A IN2015DN02987A IN2987DEN2015A IN2015DN02987A IN 2015DN02987 A IN2015DN02987 A IN 2015DN02987A IN 2987DEN2015 A IN2987DEN2015 A IN 2987DEN2015A IN 2015DN02987 A IN2015DN02987 A IN 2015DN02987A
- Authority
- IN
- India
- Prior art keywords
- experiment
- user
- dpcr
- determining
- optimization type
- Prior art date
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
- G16B25/20—Polymerase chain reaction [PCR]; Primer or probe design; Probe optimisation
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/686—Polymerase chain reaction [PCR]
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
- G16B40/10—Signal processing, e.g. from mass spectrometry [MS] or from PCR
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Physics & Mathematics (AREA)
- Engineering & Computer Science (AREA)
- Chemical & Material Sciences (AREA)
- Medical Informatics (AREA)
- General Health & Medical Sciences (AREA)
- Biophysics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biotechnology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Evolutionary Biology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Theoretical Computer Science (AREA)
- Molecular Biology (AREA)
- Genetics & Genomics (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Wood Science & Technology (AREA)
- Artificial Intelligence (AREA)
- Computer Vision & Pattern Recognition (AREA)
- Data Mining & Analysis (AREA)
- Databases & Information Systems (AREA)
- Epidemiology (AREA)
- Evolutionary Computation (AREA)
- Public Health (AREA)
- Software Systems (AREA)
- Bioethics (AREA)
- Immunology (AREA)
- Microbiology (AREA)
- Analytical Chemistry (AREA)
- Biochemistry (AREA)
- General Engineering & Computer Science (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
- Management, Administration, Business Operations System, And Electronic Commerce (AREA)
- Testing, Inspecting, Measuring Of Stereoscopic Televisions And Televisions (AREA)
- Automatic Analysis And Handling Materials Therefor (AREA)
Abstract
A computer- implemented method for designing a digital PCR (dPCR) experiment is provided. The method includes receiving , from a user , a selection of optimization type. The optimization type may be maximizing the dynamic range , minimizing the number of substrates including reaction sites needed for the experiment , determining a dilution factor , or determining the lower limit of detection , for example. The method further includes receiving , from the user , a precision measure for an experiment , and a minimum concentration of a target in a reaction site for the experiment. The method also includes determining a set of dPCR experiment design factors for the experiment based on the optimization type. The set of dPCR experiment design factors is then displayed to the user.
Applications Claiming Priority (6)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US201261701380P | 2012-09-14 | 2012-09-14 | |
US201261714137P | 2012-10-15 | 2012-10-15 | |
US201361758216P | 2013-01-29 | 2013-01-29 | |
US201361788272P | 2013-03-15 | 2013-03-15 | |
US201361830507P | 2013-06-03 | 2013-06-03 | |
PCT/US2013/059815 WO2014043581A1 (en) | 2012-09-14 | 2013-09-13 | Methods and systems for a digital pcr experiment designer |
Publications (1)
Publication Number | Publication Date |
---|---|
IN2015DN02987A true IN2015DN02987A (en) | 2015-09-18 |
Family
ID=49305105
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
IN2987DEN2015 IN2015DN02987A (en) | 2012-09-14 | 2013-09-13 |
Country Status (11)
Country | Link |
---|---|
US (2) | US10984888B2 (en) |
EP (2) | EP2895978A1 (en) |
JP (1) | JP2016500856A (en) |
KR (1) | KR20150083992A (en) |
CN (2) | CN104937600B (en) |
AU (1) | AU2013315167A1 (en) |
BR (1) | BR112015005702A2 (en) |
IN (1) | IN2015DN02987A (en) |
RU (1) | RU2015113523A (en) |
SG (1) | SG11201502797PA (en) |
WO (1) | WO2014043581A1 (en) |
Families Citing this family (8)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US8572506B2 (en) | 2010-04-09 | 2013-10-29 | Life Technologies Corporation | Visualization tool for qPCR genotyping data |
US10612080B2 (en) | 2014-09-22 | 2020-04-07 | Roche Molecular Systems, Inc. | Digital PCR for non-invasive prenatal testing |
WO2017205796A2 (en) * | 2016-05-27 | 2017-11-30 | Life Technologies Corporation | Methods and systems for graphical user interfaces for biological data |
CN106906295B (en) * | 2017-03-31 | 2020-12-08 | 天津诺禾致源生物信息科技有限公司 | Method and device for detecting gene point mutation by digital PCR |
CN107312850A (en) * | 2017-07-19 | 2017-11-03 | 华东医药(杭州)基因科技有限公司 | A kind of detection method of the invalid amplifications of PCR |
CN107784197B (en) * | 2017-10-27 | 2021-01-19 | 领航基因科技(杭州)有限公司 | PCR experiment optimization method |
JP7098096B2 (en) * | 2017-11-07 | 2022-07-11 | 株式会社リコー | Detection accuracy identification method, detection accuracy identification device, and detection accuracy identification program |
US11198130B2 (en) * | 2018-06-21 | 2021-12-14 | Sharp Life Science (Eu) Limited | EWOD system and methods to increase dynamic range for digital nucleic acid amplification |
Family Cites Families (15)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US6604092B1 (en) * | 1999-02-26 | 2003-08-05 | Lisa E. Stewart | Expert system utilizing a knowledge base and design of experiment (DOE) techniques |
US20020037507A1 (en) * | 1999-12-16 | 2002-03-28 | Walkerpeach Cindy R. | Compositions, methods and kits for allele discrimination |
WO2003040404A1 (en) * | 2001-11-09 | 2003-05-15 | Source Precision Medicine, Inc. | Identification, monitoring and treatment of disease and characterization of biological condition using gene expression profiles |
DE102005054671A1 (en) * | 2005-11-14 | 2007-05-16 | Deutsche Telekom Ag | Method and architecture for the application of electronic forms in the medical field |
CN101052041A (en) * | 2007-05-10 | 2007-10-10 | 浙江大学 | Integrating engine of medical information |
US9487822B2 (en) | 2008-03-19 | 2016-11-08 | Fluidigm Corporation | Method and apparatus for determining copy number variation using digital PCR |
JP5667049B2 (en) * | 2008-06-25 | 2015-02-12 | ライフ テクノロジーズ コーポレーション | Method and apparatus for measuring analytes using large-scale FET arrays |
ES2902894T3 (en) | 2008-08-12 | 2022-03-30 | Stokes Bio Ltd | Methods for digital PCR |
US8285734B2 (en) * | 2008-10-29 | 2012-10-09 | International Business Machines Corporation | Comparison of documents based on similarity measures |
CN101452503A (en) * | 2008-11-28 | 2009-06-10 | 上海生物信息技术研究中心 | Isomerization clinical medical information shared system and method |
CN102191314A (en) * | 2010-03-12 | 2011-09-21 | 孙朝辉 | Low-cost, simple and high-efficient detection method of SNP based on PCR |
CN101880719B (en) * | 2010-07-16 | 2012-09-05 | 中国水产科学研究院黄海水产研究所 | Microsatellite multi-PCR (Polymerase Chain Reaction) method for turbot paternity test |
CN102140541B (en) * | 2011-02-15 | 2012-11-21 | 北京林业大学 | Method for synchronously detecting four viruses of carnation |
CN102654891B (en) * | 2011-03-03 | 2015-08-12 | 深圳市智慧健康产业发展有限公司 | A kind ofly cover the health management system arranged of community and family |
CN102321624A (en) * | 2011-08-30 | 2012-01-18 | 天津农学院 | Primer sequence for internal reference gene amplification in quantitative PCR (polymerase chain reaction) analysis of gene expression of growth hormone of Clarias leather |
-
2013
- 2013-09-13 IN IN2987DEN2015 patent/IN2015DN02987A/en unknown
- 2013-09-13 SG SG11201502797PA patent/SG11201502797PA/en unknown
- 2013-09-13 CN CN201380052860.3A patent/CN104937600B/en active Active
- 2013-09-13 EP EP13773921.5A patent/EP2895978A1/en not_active Ceased
- 2013-09-13 WO PCT/US2013/059815 patent/WO2014043581A1/en active Application Filing
- 2013-09-13 KR KR1020157009139A patent/KR20150083992A/en not_active Application Discontinuation
- 2013-09-13 RU RU2015113523A patent/RU2015113523A/en not_active Application Discontinuation
- 2013-09-13 EP EP22152064.6A patent/EP4044188A1/en not_active Withdrawn
- 2013-09-13 US US14/428,312 patent/US10984888B2/en active Active
- 2013-09-13 JP JP2015532109A patent/JP2016500856A/en not_active Withdrawn
- 2013-09-13 BR BR112015005702A patent/BR112015005702A2/en not_active Application Discontinuation
- 2013-09-13 AU AU2013315167A patent/AU2013315167A1/en not_active Abandoned
- 2013-09-13 CN CN201711318728.9A patent/CN108229104B/en active Active
-
2021
- 2021-03-19 US US17/207,488 patent/US20210313010A1/en active Pending
Also Published As
Publication number | Publication date |
---|---|
WO2014043581A1 (en) | 2014-03-20 |
CN108229104B (en) | 2022-06-10 |
US10984888B2 (en) | 2021-04-20 |
EP2895978A1 (en) | 2015-07-22 |
CN104937600B (en) | 2018-01-16 |
JP2016500856A (en) | 2016-01-14 |
KR20150083992A (en) | 2015-07-21 |
SG11201502797PA (en) | 2015-05-28 |
CN108229104A (en) | 2018-06-29 |
US20150278437A1 (en) | 2015-10-01 |
RU2015113523A (en) | 2016-11-10 |
US20210313010A1 (en) | 2021-10-07 |
CN104937600A (en) | 2015-09-23 |
BR112015005702A2 (en) | 2017-07-04 |
EP4044188A1 (en) | 2022-08-17 |
AU2013315167A1 (en) | 2015-04-30 |
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