CN1274008A - Exoteric expression of hay bacillus cecropi and its method - Google Patents
Exoteric expression of hay bacillus cecropi and its method Download PDFInfo
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- CN1274008A CN1274008A CN 00102740 CN00102740A CN1274008A CN 1274008 A CN1274008 A CN 1274008A CN 00102740 CN00102740 CN 00102740 CN 00102740 A CN00102740 A CN 00102740A CN 1274008 A CN1274008 A CN 1274008A
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Abstract
利用生物技术的方法,根据杀菌肽LCI的氨基酸序列使用植物体偏爱的密码子人工合成了LCI的DNA基因片段。构建的质粒pBVAB16在大肠杆菌DH5α中高效表达LCI,占大肠杆菌总蛋白量的8.7%。大肠杆菌经离心、超声破碎、加热沉淀,以及离子交换和疏水作用液相色谱可以得到纯化的LCI。LCI能专门杀死水稻白叶枯病菌菌株G,最低有效浓度为2.5μg/ml。初步推断LCI是进入细菌体内,抑制了RNA的转录而引起细菌死亡。该基因可望用于植物抗病育种及特效菌肥的生产。Using the method of biotechnology, according to the amino acid sequence of cecropin LCI, the DNA gene fragment of LCI was artificially synthesized using the codons favored by plants. The constructed plasmid pBVAB16 highly expressed LCI in Escherichia coli DH5α, accounting for 8.7% of the total protein content of Escherichia coli. Escherichia coli can be purified LCI by centrifugation, ultrasonic disruption, heating precipitation, ion exchange and hydrophobic interaction liquid chromatography. LCI can specifically kill Xanthomonas oryzae strain G, and the minimum effective concentration is 2.5μg/ml. It is preliminarily deduced that LCI enters the bacteria, inhibits the transcription of RNA and causes the death of bacteria. The gene is expected to be used in plant disease resistance breeding and production of special bacterial fertilizer.
Description
本发明枯草芽孢杆菌杀菌肽的体外表达及其方法属于现代生物技术领域。The in vitro expression of bacillus subtilis cecropin and the method thereof belong to the field of modern biotechnology.
现有技术:current technology:
早在1960年以前,人们就对微生物的拮抗作用进行了广泛的生理生化研究,对各类拮抗物质进行了分门别类,对医药学的发展作出很大贡献。近年来人们对从乳酸杆菌中分离得到的肽类抗生素的作用机制和分子遗传学研究扩展的非常广泛和深入(综述文章有Klaenhammer,T.R.(1993).Genetics of bacteriocins producedby lactic acid bacteria.FEMS Microbiol Rev 12,39-86.和Jack,R.W.,Tagg,J.R.& Ray,B.(1995).Bacteriocins of gram-positive bacteria.Microbiol Rev 59,171-200.)。因为它们同其它的抗生素不同之处在于它们几乎不会引起微生物的抗药性,比如乳酸链球菌肽(nisin)作为食品的防腐剂已有五十年的历史,但是并没发现有腐败菌产生抗性的现象。因此肽类抗生素将在今后的食品业和医药业拥有巨大应用前景(Breukink,E.,Wiedemann,I.,van Kraaij,C.,Kuipers,O.P.,Sahl,H.G.& de Kruijff,B.(1999).Use ofthe Cell Wall Precursor Lipid II by a Pore-Forming Peptide Antibiotic.Science 287,2361-2364.)。As early as 1960, people conducted extensive physiological and biochemical research on the antagonism of microorganisms, classified various antagonistic substances, and made great contributions to the development of medicine. In recent years, people have expanded the mechanism of action and molecular genetics of peptide antibiotics isolated from Lactobacillus very extensively and deeply (review articles include Klaenhammer, T.R. (1993). Genetics of bacteriaocins produced by lactic acid bacteria. FEMS Microbiol Rev 12, 39-86. and Jack, R.W., Tagg, J.R. & Ray, B. (1995). Bacteriocins of gram-positive bacteria. Microbiol Rev 59, 171-200.). Because they are different from other antibiotics in that they hardly cause microbial resistance, such as nisin (nisin) has been used as a food preservative for fifty years, but no spoilage bacteria have been found to produce resistance. sexual phenomenon. Therefore peptide antibiotics will have huge application prospect (Breukink, E., Wiedemann, I., van Kraaij, C., Kuipers, O.P., Sahl, H.G.& de Kruijff, B. (1999) .Use of the Cell Wall Precursor Lipid II by a Pore-Forming Peptide Antibiotic. Science 287, 2361-2364.).
杀菌肽LCI是我们实验室从枯草芽孢杆菌AO14的培养液中分离出的碱性多肽,分子量为5.4 kDa。它对水稻白叶枯病菌(Xanthomonas oryzae pv.oryzaestrain G.)水稻条斑病菌(Xanthomonas campestris pv.oryzea S2)马铃薯青枯病菌(Pseudomonas solanacearum POl)烟草青枯病菌(Pseudomonassolanacearum T62,T64)和辣椒青枯病菌(Pseudomonas solanacearum PE1)有明显的抑制作用。其全部氨基酸序列为:Cecropin LCI is a basic polypeptide isolated from the culture solution of Bacillus subtilis AO14 in our laboratory, with a molecular weight of 5.4 kDa. It is effective against Xanthomonas oryzae pv.oryzaestrain G., Xanthomonas campestris pv.oryzea S2, Pseudomonas solanacearum POl, Pseudomonassolanacearum T62, T64 and pepper solanacearum blight bacteria (Pseudomonas solanacearum PE1) has obvious inhibitory effect. Its full amino acid sequence is:
AIKLVQSPNG NFAASFVLDG TKWIFKSKYY DSSKGYWVGI YEVWDRKAIKLVQSPNG NFAASFVLDG TKWIFKSKYY DSSKGYWVGI YEVWDRK
通过对国际基因及蛋白质数据库(Genbank和Swiss-port)的检索,没有发现与此杀菌肽序列结构相似的蛋白或基因。该结果已发表(刘进元,陈章良,抗菌多肽LCI的一级结构,自然科学进展,1994,4(3):365-367)。By searching the international gene and protein databases (Genbank and Swiss-port), no protein or gene similar in structure to the cecropin sequence was found. The results have been published (Liu Jinyuan, Chen Zhangliang, Primary Structure of Antibacterial Peptide LCI, Advances in Natural Science, 1994, 4(3): 365-367).
枯草芽孢杆菌拮抗性广,拮抗物质变化多样。我们国内近些年来对枯草芽孢杆菌的抗菌蛋白的研究也时有报道,在分子生物学方面的研究尚不深入(比如辛玉成,秦淑莲,金静,张迎春,徐坤,苹果霉心病生防菌株抗菌蛋白的提纯与部分性质初报,莱阳农学院学报,1999,16(1)。孙建,枯草芽孢杆菌B-903菌株抗生物质对植物病原真菌的抑制作用,植物病理学报,1995,25(1):69~72)。Bacillus subtilis has a wide range of antagonistic properties, and the antagonistic substances are varied. In our country in recent years, the research on the antibacterial protein of Bacillus subtilis has also been reported from time to time, but the research on molecular biology is not yet in-depth (such as Xin Yucheng, Qin Shulian, Jin Jing, Zhang Yingchun, Xu Kun, apple moldy heart disease biocontrol strains Preliminary report on the purification and partial properties of antibacterial proteins, Journal of Laiyang Agricultural College, 1999, 16 (1). Sun Jian, The inhibitory effect of Bacillus subtilis B-903 strain antibiotics on plant pathogenic fungi, Acta Phytopathology, 1995, 25( 1): 69~72).
发明的目的purpose of the invention
在广泛的研究利用植物、动物和昆虫来源的抗植物病原菌和病虫害基因进行农作物抗病育种,并取得许多成果的同时,研究来源于拮抗微生物的抗病基因并应用于植物基因工程目前还比较少。While extensive research has been conducted on the use of plant, animal and insect-derived anti-plant pathogenic bacteria and disease and insect pest genes for crop disease-resistant breeding, and many achievements have been made, there are still relatively few studies on disease-resistant genes derived from antagonistic microorganisms and applied to plant genetic engineering. .
本实验室在1990年以来就已从大田中分离出数种拮抗能力强的枯草芽孢杆菌(Bacillus subtilis),并分离纯化出数种对植物病原真菌和病原细菌的体外生长有抑制作用的多肽和蛋白质。进一步克隆出这些抗病基因,利用它们不同的作用机理而产生的可能的协同作用,将其同时导入植物,有希望使转基因植物即获得广谱抗菌能力又对单一病原菌的抗性增强。具有广谱抗菌,对人畜无毒的肽类抗生素同样可以用于基于生物基因工程的食品与医药产业。Since 1990, our laboratory has isolated several Bacillus subtilis with strong antagonistic ability from the field, and isolated and purified several polypeptides and protein. These disease-resistant genes are further cloned, and the possible synergistic effect produced by their different mechanisms of action is used to introduce them into plants at the same time. It is hoped that the transgenic plants will not only obtain broad-spectrum antibacterial ability but also enhance resistance to single pathogens. Peptide antibiotics with broad-spectrum antibacterial and non-toxic to humans and animals can also be used in the food and pharmaceutical industries based on biogenetic engineering.
分离和纯化特异的抗菌类多肽,对它们进行生理生化特性以及结构和功能的研究分析,主要是拮抗机理的阐明,这在植物基因工程和植物病理学领域具有重要的理论和应用价值。阐明多肽的结构与功能在很大程度上要依赖于该多肽基因的克隆和体外的表达,从而为克隆出该多肽的其它相关基因、研究基因的表达与调控提供分子生物学基础,同时为获得转基因抗菌农作物打下了物质基础。Separation and purification of specific antibacterial peptides, research and analysis of their physiological and biochemical characteristics, structure and function, mainly elucidation of the antagonistic mechanism, which has important theoretical and application value in the fields of plant genetic engineering and plant pathology. Clarification of the structure and function of the polypeptide depends to a large extent on the cloning and in vitro expression of the polypeptide gene, thereby providing a molecular biological basis for cloning other related genes of the polypeptide, studying gene expression and regulation, and at the same time providing a basis for obtaining Transgenic antibacterial crops have laid a material foundation.
发明的内容及方案The content and scheme of the invention
1.按照已有的LCI氨基酸序列合成其基因。1. Synthesize its gene according to the existing LCI amino acid sequence.
2.将LCI基因克隆到中间载体pBC7。2. Cloning the LCI gene into the intermediate vector pBC7.
3.将LCI基因克隆到表达载体pBVAB16。3. Cloning the LCI gene into the expression vector pBVAB16.
4.LCI杀菌肽在大肠杆菌中的诱导表达。4. Induced expression of LCI cecropin in Escherichia coli.
5.表达的LCI的分离纯化。5. Separation and purification of expressed LCI.
6.表达的LCI的杀菌活性检测。6. Detection of the bactericidal activity of the expressed LCI.
7.表达的LCI对体外转录的抑制作用。7. Inhibitory effect of expressed LCI on transcription in vitro.
优点及效果Advantages and effects
将重组表达载体pBV AB16转入大肠杆菌DH5α中,经42℃高温诱导,在5小时时LCI的表达量达到最高,经对电泳凝胶的扫描分析,LCI的表达量占大肠杆菌的总蛋白含量8.7%。The recombinant expression vector pBV AB16 was transferred into Escherichia coli DH5α, induced by high temperature at 42°C, and the expression level of LCI reached the highest in 5 hours, and the expression level of LCI accounted for the total protein content of Escherichia coli by scanning analysis of the electrophoresis gel. 8.7%.
杀菌肽LCI是胞外释放的质粒编码的核糖体合成的肽链,具有低分子量、带正电荷和热稳定性。Cecropin LCI is a ribosome-synthesized peptide chain encoded by a plasmid released extracellularly, with low molecular weight, positive charge and thermal stability.
纯化的LCI能专门杀死水稻白叶枯病菌(Xanthomonas oryzae pv.oryzae)菌株G,LCI最低有效浓度为2.5μg/ml,该菌的在0.13mg/ml的LCI处理下存活率为10-3。Purified LCI can specifically kill rice bacterial blight (Xanthomonas oryzae pv.oryzae) strain G, the minimum effective concentration of LCI is 2.5μg/ml, and the survival rate of the bacteria is 10 -3 under the treatment of 0.13mg/ml LCI .
LCI含有同其它细菌素相似的保守的序列结构,它们主要是乳酸菌的第二类细菌素。根据推测的LCI的二级结构以及LCI的体外转录抑制活性,可以初步推断LCI是进入细菌体内,抑制了RNA的转录活动而引起细菌死亡。不同于其它细菌素只能杀死革兰氏阳性菌,LCI能杀死革兰氏阴性菌的这个特征将大大有利于核糖体合成的细菌素在基因工程抗病育种的应用,该基因可望首先应用于植物抗病育种及特效菌肥的生产。LCI contains a conserved sequence structure similar to other bacteriocins, which are mainly the second class of bacteriocins of lactic acid bacteria. According to the presumed secondary structure of LCI and the in vitro transcription inhibitory activity of LCI, it can be preliminarily inferred that LCI enters the bacteria and inhibits the transcription activity of RNA to cause the death of bacteria. Unlike other bacteriocins that can only kill Gram-positive bacteria, the feature that LCI can kill Gram-negative bacteria will greatly facilitate the application of ribosome-synthesized bacteriocins in genetic engineering disease-resistant breeding. Firstly, it is used in plant disease resistance breeding and production of special bacterial fertilizer.
附图说明Description of drawings
图1.LCI基因序列及其对应的氨基酸序列。A:丙氨酸,I:异亮氨酸,K:赖氨酸,L:亮氨酸,V:缬氨酸,Q:谷氨酰胺,S:丝氨酸,P:脯氨酸,N:天冬酰胺,G:甘氨酸,F:苯丙氨酸,D:天冬氨酸,T:苏氨酸,W:色氨酸,Y:酪氨酸,E:谷氨酸,R:精氨酸。下划线的区域为化学合成的片段。Figure 1. LCI gene sequence and its corresponding amino acid sequence. A: Alanine, I: Isoleucine, K: Lysine, L: Leucine, V: Valine, Q: Glutamine, S: Serine, P: Proline, N: Day Paragine, G: Glycine, F: Phenylalanine, D: Aspartic Acid, T: Threonine, W: Tryptophan, Y: Tyrosine, E: Glutamic Acid, R: Arginine . The underlined regions are chemically synthesized fragments.
图2.LCI在不同浓度下对水稻白叶枯病菌(Xanthomonas oryzaepv.oryzae)菌株G生长的抑制作用。LCI的浓度为0μg/ml(●);0.6μg/ml(O);2.5μg/ml(△);4.9μg/ml(▲);9.8μg/ml(■)。Figure 2. The inhibitory effect of LCI on the growth of rice bacterial blight (Xanthomonas oryzaepv.oryzae) strain G at different concentrations. The concentration of LCI was 0 μg/ml (●); 0.6 μg/ml (O); 2.5 μg/ml (Δ); 4.9 μg/ml (▲); 9.8 μg/ml (■).
图3.LCI对水稻白叶枯病菌(Xanthomonas oryzae pv.oryzae)菌株G杀死能力的测定。LCI的两个浓度为0.13mg/ml(●)和0.066mg/ml(■)。Figure 3. Determination of LCI's ability to kill Xanthomonas oryzae pv. oryzae strain G. The two concentrations of LCI were 0.13 mg/ml (•) and 0.066 mg/ml (■).
图4.LCI不同浓度对对体外转录的影响。LCI的浓度:第1道为不加LCI的对照,第2道0.11mg/ml,第3道0.22mg/ml,第4道0.39mg/ml。Figure 4. Effects of different concentrations of LCI on in vitro transcription. The concentration of LCI: the first lane is the control without LCI, the second lane is 0.11 mg/ml, the third lane is 0.22 mg/ml, and the fourth lane is 0.39 mg/ml.
图5.LCI的二级结构以及与其它细菌素多肽序列的比较。图中的方框、下划线、阴影和黑体都代表保守区域。CF:Chou-Fasman;GOR:Garnier-Osguthorpe-Robson。Figure 5. Secondary structure of LCI and comparison with other bacteriocin polypeptide sequences. Boxes, underlines, shading, and boldface in the figure all represent conserved regions. CF: Chou-Fasman; GOR: Garnier-Osguthorpe-Robson.
实施例Example
1、LCI基因的化学合成及其克隆1. Chemical synthesis and cloning of LCI gene
杀菌肽LCI产生于枯草芽孢杆菌(Bacillus subtilis)A014的培养液。它总共由47个氨基酸组成,含有6个赖氨酸、1个精氨酸和3个色氨酸。根据LCI的氨基酸序列,使用植物体偏爱的密码子,加上起始和终止密码子以及ClaI和Hind III两个酶切位点,人工合成了的LCI的DNA基因片段(见图1.)。四个加下划线的核酸片段是用DNA合成仪ABI381A(LKB)以固相亚磷酰胺法合成的:Cecropin LCI is produced in the culture fluid of Bacillus subtilis A014. It consists of 47 amino acids in total, containing 6 lysines, 1 arginine and 3 tryptophans. According to the amino acid sequence of LCI, the DNA gene fragment of LCI was artificially synthesized by using the codons favored by plants, plus the start and stop codons and the two restriction sites of ClaI and Hind III (see Figure 1.). The four underlined nucleic acid fragments were synthesized by the solid-phase phosphoramidite method using a DNA synthesizer ABI381A (LKB):
1. 5′atatcgatggctatcaagctggtgcagtccccaaacggcaacttcgccgct 3′1. 5′atatcgatggctatcaagctggtgcagtccccaaacggcaacttcgccgct 3′
2. 5′acttgaagatccacttagtaccgtccagcacgaaggaagcggcgaagttgc 3′2. 5′acttgaagatccacttagtaccgtccagcacgaaggaagcggcgaagttgc 3′
3. 5′taagtggatcttcaagtccaaatactatgactccagcaagggctactgggt 3′3. 5′taagtggatcttcaagtccaaatactatgactccagcaagggctactgggt 3′
4. 5′cgaagcttacttgcggtcccacacctcgtagatgccgacccagtagccctt 3′4. 5′cgaagcttacttgcggtccccaacacctcgtagatgccgacccagtagccctt 3′
每个片断含有51个核苷酸残基。它们是用含有8M尿素的16%的丙烯酰胺凝胶电泳纯化的。含有DNA片断的胶段浸入0.5M NaCl溶液中过夜,而后上清液经DEAE-Sepharose进一步纯化,脱盐、冷冻干燥。每个DNA片断以200pmol等量混合后在水浴中85℃加热5分钟,而后渐渐冷却到室温。再加入dNTP和T4DNA多聚酶,在37℃进行填平反应。Each fragment contains 51 nucleotide residues. They were purified by electrophoresis on a 16% acrylamide gel containing 8M urea. The gel segment containing DNA fragments was immersed in 0.5M NaCl solution overnight, and then the supernatant was further purified by DEAE-Sepharose, desalted, and freeze-dried. Each DNA fragment was mixed in equal amounts of 200 pmol, heated in a water bath at 85°C for 5 minutes, and then gradually cooled to room temperature. Then add dNTP and T4 DNA polymerase, and carry out the filling reaction at 37°C.
2、LCI表达载体的构建2. Construction of LCI expression vector
合成的LCI基因片段经Cla I和Hind III双酶切,用T4 DNA连接酶将它连接到经同样的这两种酶处理过的pBluescript II KS质粒上,经过转化大肠杆菌DH5α和筛选,得到含有LCI基因的克隆质粒pBC7。该质粒经序列分析证实含有正确的LCI基因。The synthesized LCI gene fragment was double digested with Cla I and Hind III, connected to the pBluescript II KS plasmid treated with the same two enzymes with T4 DNA ligase, and transformed into Escherichia coli DH5α and screened to obtain The cloning plasmid pBC7 of the LCI gene. This plasmid was confirmed by sequence analysis to contain the correct LCI gene.
pBC7质粒经Cla I酶消化后用DNA多聚酶I Klenow大片断进行补平,而后用BamH I消化,用2%的琼脂糖回收LCI基因片段。质粒pBV220经EcoRI消化后用DNA多聚酶I Klenow大片断进行补平,而后用BamH I消化。将LCI基因片段连接到pBV220质粒中后,经过转化大肠杆菌DH5α和筛选,制成质粒pBVAB16。After the pBC7 plasmid was digested with Cla I enzyme, it was filled with DNA polymerase I Klenow large fragment, then digested with BamH I, and the LCI gene fragment was recovered with 2% agarose. Plasmid pBV220 was digested with EcoRI and filled in with the large fragment of DNA polymerase I Klenow, then digested with BamH I. After linking the LCI gene fragment into the pBV220 plasmid, it was transformed into Escherichia coli DH5α and screened to make the plasmid pBVAB16.
3.超表达的LCI的提取和纯化3. Extraction and Purification of Overexpressed LCI
含有质粒pBVAB16的大肠杆菌DH5α,在LB液体培养基中活化,其中氨苄青霉素含量为50mg/l,按1%的接种量接入新鲜的同种培养基中,30℃培养2.5小时,而后42℃诱导培养5小时,转速均为200rpm。Escherichia coli DH5α containing the plasmid pBVAB16 was activated in LB liquid medium, in which the content of ampicillin was 50 mg/l, inserted into fresh same medium at 1% inoculum size, cultured at 30°C for 2.5 hours, and then cultured at 42°C The induction culture was carried out for 5 hours, and the rotational speed was 200 rpm.
诱导表达的大肠杆菌经离心4000rpm 10分钟回收后,用50mM Tris-HCl,pH7.8缓冲液洗两遍,冰浴中超声破碎400W 30次,每次15秒,间隔10秒,60℃加热20分钟,10000rpm离心20分钟,去掉沉淀。而后经离子交换液相色谱CM-Sepharose Fast Flow C26/20以0~0.6M NaCl线性梯度洗脱。得到的活性色谱峰加入4M硫酸铵调成2M,加入0.5M,pH6.5的磷酸二氢钾调成50mM,微虑后用疏水作用液相色谱Phenyl-Superose HR5/5以1.7~0M硫酸铵进行线性洗脱,得到的主峰即为纯化的LCI。此LCI样品经PD-10Sephadex G-25M(Pharmacia)脱盐后冻干,保存于-20℃备用。用Tris-tricine SDS-PAGE电泳确定LCI的纯度。LCI的浓度由280nm紫外吸收法和Lowry法测定。LCI的表达量由薄层扫描仪对考马斯亮蓝染色的SDS-PAGE凝胶分析确定。The induced expression of Escherichia coli was recovered by centrifugation at 4000rpm for 10 minutes, washed twice with 50mM Tris-HCl, pH7.8 buffer solution, ultrasonically broken at 400W for 30 times in an ice bath, each time for 15 seconds, with an interval of 10 seconds, and heated at 60°C for 20 Minutes, centrifuged at 10000rpm for 20 minutes to remove the precipitate. Then it was eluted by ion exchange liquid chromatography CM-Sepharose Fast Flow C26/20 with a linear gradient of 0-0.6M NaCl. Add 4M ammonium sulfate to the obtained active chromatographic peak to adjust to 2M, add 0.5M, pH6.5 potassium dihydrogen phosphate to adjust to 50mM, and use hydrophobic interaction liquid chromatography Phenyl-Superose HR5/5 to adjust to 1.7~0M ammonium sulfate Perform linear elution, and the main peak obtained is the purified LCI. The LCI sample was desalted with PD-10Sephadex G-25M (Pharmacia), freeze-dried, and stored at -20°C for future use. The purity of LCI was determined by Tris-tricine SDS-PAGE electrophoresis. The concentration of LCI was determined by 280nm ultraviolet absorption method and Lowry method. The expression level of LCI was determined by SDS-PAGE gel analysis stained with Coomassie brilliant blue by TLC scanner.
由于pBV AB16质粒有以下特点,使LCI在大肠杆菌中得到了高效的表达:1、质粒中含有SD序列,其后紧接多克隆位点,若位于起始密码子AUG上游3~11个核苷酸处,与16s rRNA的3’端序列互补,能促进蛋白质的高效翻译;2、PR和PL两个启动子串联,而且PL受CI蛋白抑制,可通过温度的变化来诱导它的表达,从而增强了表达的稳定性和强度;3、来自大肠杆菌的rrB核糖体基因的转录终止信号具有强的终止作用,能够避免密码子的通读,有利于质粒—宿主系统的稳定。Because the pBV AB16 plasmid has the following characteristics, LCI can be expressed efficiently in E. coli: 1. The plasmid contains SD sequence, followed by the multiple cloning site, if it is located 3 to 11 nuclei upstream of the start codon AUG It is complementary to the 3' end sequence of 16s rRNA, which can promote efficient translation of proteins; 2. The two promoters of PR and PL are connected in series, and PL is inhibited by CI protein, which can be induced by temperature changes 3. The transcription termination signal of the rrB ribosomal gene from Escherichia coli has a strong termination effect, can avoid codon read-through, and is conducive to the stability of the plasmid-host system.
利用LCI热稳定的特性,在E.coli中超表达的LCI可以从超声波破碎的细胞悬液中抽提出来,并且用热水浴的办法使大部分蛋白质受热变形沉淀下来,从而很容易地用CM-Sepharose Fast Flow及Phenyl-Superose HR5/5或者MonoS液相色谱纯化得到电泳纯的LCI。通过薄层扫描测定LCI的表达量为大肠杆菌总蛋白量的8.7%。表达的LCI电泳表观分子量为3.5kDa。Utilizing the heat-stable properties of LCI, the overexpressed LCI in E.coli can be extracted from the cell suspension sonicated, and most of the proteins are thermally deformed and precipitated by means of a hot water bath, so that it is easy to use CM -Sepharose Fast Flow and Phenyl-Superose HR5/5 or MonoS liquid chromatography purification to obtain electrophoretic pure LCI. The expression level of LCI was determined by TLC scanning to be 8.7% of the total protein content of Escherichia coli. The apparent molecular weight of the expressed LCI electrophoresis is 3.5kDa.
应该指出的是,经离心去除的细胞碎片和60℃热处理产生的沉淀中都有抑菌活性,也就是说,有相当一部分LCI没有被回收到。若这些沉淀用缓冲液再冲洗两次,合并洗涤液,有希望提高得率。It should be noted that both the cell debris removed by centrifugation and the precipitate produced by heat treatment at 60°C had antibacterial activity, that is to say, a considerable part of LCI was not recovered. If these precipitates were washed two more times with buffer and the washes were combined, it is hoped that the yield could be improved.
4.LCI的抗菌活性检测4. Detection of antibacterial activity of LCI
1、96孔板浊度比色法确定LCI的抑菌比活:1. Determine the antibacterial specific activity of LCI by 96-well plate turbidity colorimetry:
用水稻白叶枯病菌(Xanthomonas oryzae pv.oryzea strain G)为指示菌,将它用LB液体培养基过夜活化(200rpm,28℃)后,取20μl,加入100μl新鲜的LB培养基,20μl不同浓度的LCI水溶液(从1.1mg/ml LCI开始,以二倍法稀释八次),加入96孔板,重复两次。无抑制对照为将20μl LCI液换成20μl无离子水,空白对照为120μl LB培养基和20μl无离子水。96孔板于培养箱中28℃培养。每隔一小时,在微量分光光度计(Microplate AutoreaderEL310,BIO-TEK INSTRUMENTS)上,于540nm的光线下测量每个样品孔的光密度。Use Xanthomonas oryzae pv.oryzea strain G as indicator bacteria, activate it with LB liquid medium overnight (200rpm, 28℃), take 20μl, add 100μl fresh LB medium, 20μl different concentrations LCI aqueous solution (starting from 1.1mg/ml LCI, diluted eight times by two-fold method), added to a 96-well plate, and repeated twice. The no-inhibition control was 20 μl LCI solution replaced with 20 μl deionized water, and the blank control was 120 μl LB medium and 20 μl deionized water. The 96-well plate was cultured at 28°C in an incubator. Every hour, the optical density of each sample well was measured under the light of 540 nm on a micro-volume spectrophotometer (Microplate Autoreader EL310, BIO-TEK INSTRUMENTS).
由病原细菌Xanthomonas oryzae pv.oryzae G不同的生长曲线可以确定LCI的抑菌的最低浓度为2.5μg/ml(见图2.)。From the different growth curves of the pathogenic bacteria Xanthomonas oryzae pv.oryzae G, it can be determined that the minimum concentration of LCI is 2.5 μg/ml (see Figure 2.).
2、平板扩散法分析LCI的抑菌谱:2. Analyze the antibacterial spectrum of LCI by plate diffusion method:
在LB培养基平板上,倒入1ml活化的被测菌(包括Xanthomonas oryzaepv.oryzea strain G)培养悬浊液,涂平,3分钟后移去多余的液体,晾干。在平板的不同位置上分别滴加5μl LCI溶液,5μl相应的缓冲液为对照,于28℃过夜培养,观测抑菌圈大小。另外一种方法是将5μl LCI溶液,5μl相应的缓冲液为对照先分别滴加在平板的同一条线上,待液滴消失后,用接种环蘸取活化好的菌液沿着两个液滴的位置划一直线。一个平板可以同时测定数种不同的细菌。28℃过夜培养,观测抑菌圈。实验发现LCI对Xanthomonas oryzae pv.oryzae G有特殊的抑制作用。On the LB medium plate, pour 1ml of activated test bacteria (including Xanthomonas oryzaepv.oryzea strain G) culture suspension, spread evenly, remove excess liquid after 3 minutes, and dry in the air. Add 5 μl of LCI solution dropwise on different positions of the plate, and 5 μl of the corresponding buffer as a control, incubate overnight at 28°C, and observe the size of the inhibition zone. Another method is to drop 5μl LCI solution and 5μl corresponding buffer solution on the same line of the plate as a control. After the droplet disappears, use an inoculation loop to dip the activated bacterial solution along the two liquid Draw a straight line at the location of the drop. One plate can measure several different bacteria at the same time. Incubate overnight at 28°C and observe the inhibition zone. Experiments found that LCI has a special inhibitory effect on Xanthomonas oryzae pv.oryzae G.
3、LCI的杀菌能力测试3. Bactericidal ability test of LCI
将过夜活化的X.oryzae pv.oryzae strain G用LB液体培养基稀释到0.035OD 600nm。经微虑除菌的LCI样品(0.53mg/ml)作一次二倍稀释后,分别以100μl的量与300μl的稀释菌液混合与微量离心管中,在室温下存放。每隔一定的时间,取出20μl于980μl的LB液体培养基中混匀,而后取出100μl涂于LB琼脂板上,28℃过夜培养。通过对在平板上形成的克隆数可以确定LCI的杀菌能力。从图3.可以看出LCI并不是立即杀死细菌,细菌的数目在加入LCI后大约半小时开始下降,下降过程持续到八个小时。水稻白叶枯病菌(X.oryzaepv.oryzae strain G)对LCI的两个浓度0.13mg/ml(●)和0.066mg/ml(■)都表现大概一致的敏感趋势,在高的LCI浓度下,该菌的存活率大约为10-3。The overnight activated X. oryzae pv. oryzae strain G was diluted to 0.035OD 600nm with LB liquid medium. The microfiltration-sterilized LCI sample (0.53 mg/ml) was diluted once twice, mixed with 100 μl of diluted bacterial solution and 300 μl of the diluted bacteria solution, and stored in a microcentrifuge tube at room temperature. At regular intervals, 20 μl was taken out and mixed in 980 μl LB liquid medium, and then 100 μl was taken out and spread on an LB agar plate, and cultivated overnight at 28°C. The bactericidal ability of LCI can be determined by the number of colonies formed on the plate. From Figure 3. It can be seen that LCI does not kill bacteria immediately. The number of bacteria begins to decline about half an hour after adding LCI, and the decline process lasts until eight hours. Rice bacterial blight (X.oryzaepv.oryzae strain G) showed roughly the same sensitivity trend to two concentrations of LCI, 0.13mg/ml (●) and 0.066mg/ml (■), at high LCI concentrations, The survival rate of the bacteria is about 10 -3 .
在大肠杆菌中表达的LCI可能没有转录后的修饰,但是天然的LCI则有可能,而且这种修饰往往会赋予杀菌肽更多的活性特征。另外现在还很难说明增加在N端的蛋氨酸是否会影响LCI的杀菌特性。LCI expressed in E. coli may not have post-transcriptional modifications, but native LCIs may, and such modifications tend to confer more active characteristics on cecropins. It is also difficult to say whether adding methionine at the N-terminus would affect the bactericidal properties of LCI.
水稻白叶枯病菌X.oryzae pv.oryzae G是革兰氏阴性菌,而在通常条件下革兰氏阳性菌产生的细菌素只对革兰氏阳性菌有作用。目前已知的植物病原细菌大都是革兰氏阴性菌,因此LCI能杀死革兰氏阴性菌的这个特征将大大有利于核糖体合成的细菌素在基因工程抗病育种的应用。X.oryzae pv.oryzae G is a gram-negative bacterium, and the bacteriocin produced by gram-positive bacteria only has an effect on gram-positive bacteria under normal conditions. Most of the currently known plant pathogenic bacteria are Gram-negative bacteria, so the feature that LCI can kill Gram-negative bacteria will greatly facilitate the application of ribosome-synthesized bacteriocins in genetically engineered disease-resistant breeding.
5.LCI对体外转录的抑制实验5. Inhibition experiment of LCI on in vitro transcription
用Riboprobe Combination System(Promega)和SP6多聚酶来测定LCI可能的转录抑制活性。体外转录分析在20μl的反应体系中含有:40mM Tris-HCl,pH7.5,6mM MgCl2,2mM亚精胺,10mM NaCl,10mM DTT,500μM each ATP,GTP,CTP and UTP,40 U Recombinant RNasin Ribonuclease inhibitor,0.5μg pGEMExpress Positive Control Template,20 U SP6多聚酶,在37℃反应80分钟。在不同的反应中加入不同量的LCI。反应产物经1%琼脂糖(含0.5μg/ml溴化乙锭)电泳后,于254nm的紫外光下观测RNA的合成量。如图4所示,LCI的三个不同浓度:第2道0.11mg/ml,第3道0.22mg/ml和第4道0.39mg/ml相对于不加LCI的对照(第1道)都表现出对RNA合成的影响,而且在0.39mg/ml浓度时,RNA的合成几乎全被抑制。The possible transcriptional repressive activity of LCI was determined using Riboprobe Combination System (Promega) and SP6 polymerase. In vitro transcription analysis contains: 40mM Tris-HCl, pH7.5, 6mM MgCl 2 , 2mM spermidine, 10mM NaCl, 10mM DTT, 500μM each ATP, GTP, CTP and UTP, 40 U Recombinant RNasin Ribonuclease in a 20μl reaction system Inhibitor, 0.5μg pGEMExpress Positive Control Template, 20 U SP6 polymerase, react at 37℃ for 80 minutes. Different amounts of LCI were added in different reactions. After the reaction product was subjected to electrophoresis on 1% agarose (containing 0.5 μg/ml ethidium bromide), the synthesis amount of RNA was observed under 254 nm ultraviolet light. As shown in Figure 4, the three different concentrations of LCI: 0.11 mg/ml in lane 2, 0.22 mg/ml in lane 3 and 0.39 mg/ml in lane 4 all exhibited relative to the control without LCI (lane 1). No effect on RNA synthesis, and at the concentration of 0.39mg/ml, the synthesis of RNA was almost completely inhibited.
6.LCI的序列分析6. Sequence analysis of LCI
对LCI的序列通过http://www.ncbi.nlm.nih.gov网点用BLAST软件在″nr″数据库里进行了搜索,结果没有发现相似的多肽或基因。LCI的二级结构通过GCG软件用Chou-Fasman(CF)和Garnier-Osguthorpe-Robson(GOR)两种方法分析确定。LCI的计算分子量为5595.12 Da它的计算等电点pI=10.25。如图5所示,根据预测的二级结构和与其它细菌素氨基酸序列的对比可以发现,在LCI的N端到第23位的色氨酸的肽段中可能含有一个βsheet的结构,而在此色氨酸之后到肽链的C端可能形成一个能够跨越质膜的双亲结构,有如细菌素piscicocins V1。细菌素中肽段结构的互补作用对于它的活性十分重要,就象lactococcin G,plantaricin A和plantaricin S的活性要求它的alpha与beta链协同作用一样。The sequence of LCI was searched in "nr" database through http://www.ncbi.nlm.nih.gov website with BLAST software, but no similar polypeptide or gene was found. The secondary structure of LCI was determined by GCG software using Chou-Fasman (CF) and Garnier-Osguthorpe-Robson (GOR) methods. The calculated molecular weight of LCI is 5595.12 Da and its calculated isoelectric point pI=10.25. As shown in Figure 5, according to the predicted secondary structure and comparison with the amino acid sequences of other bacteriocins, it can be found that the peptide segment of tryptophan from the N-terminus of LCI to the 23rd position may contain a βsheet structure, while in After this tryptophan, the C-terminus of the peptide chain may form an amphipathic structure that can cross the plasma membrane, such as bacteriocin piscicocins V1. The complementarity of the peptide structure in bacteriocin is very important for its activity, just as the activity of lactococcin G, plantaricin A and plantaricin S requires the cooperation of its alpha and beta chains.
杀菌肽LCI的一级结构与许多其它种类的细菌素有三处相同之处,其中还包括羊毛硫抗生素。第一、第二类细菌素的保守序列YGNGV在LCI中结构不全,在相同的位置它只有NG。参考肽链中色氨酸的位置,可以发现第十位的甘氨酸是十分保守的,如图5的方框所示。它在许多细菌素中都是如此,如lactacinF和lacticin 481等等。第二、细菌素中色氨酸的残基数含量从1个到4个不等,大多数含有2至3个,但是它们的分布却是规律性的,尽管并不是十分严谨。在细菌素divercin V41中的任何一个色氨酸经过N-溴琥珀酰胺化会使细菌素失去活性,因此推测LCI中的3个色氨酸对其杀菌活性同样起者重要的功能。第三、LCI肽链中的第28到30位的KYY结构在细菌素enterocin I(enterocin L50A)也存在,在细菌素enterocin L50B在则含有类似的结构KFY。KYY及其类似结构在其它一些细菌素中也有,只是不在肽链的中部,而是在N端区域,同时在此位置代替KYY结构的是异亮氨酸残基。The primary structure of cecropin LCI has three similarities with many other classes of bacteriocins, including lantibiotics. The conserved sequence YGNGV of the first and second bacteriocins is incomplete in LCI, and it only has NG at the same position. Referring to the position of tryptophan in the peptide chain, it can be found that the glycine at the tenth position is very conserved, as shown in the box in Figure 5 . It is true in many bacteriocins, such as lactacinF and
根据这些特征,推断LCI与乳酸菌中第二类细菌素的pediocin家族的细菌素最为相似,它们是curvacin A(sakacin A),divercin V41,enterocin I(L50A),enterocin L50B,pediocin PA-1(AcH)和sakacin P。According to these characteristics, it is inferred that LCI is most similar to the bacteriocins of the pediocin family of the second type of bacteriocins in lactic acid bacteria, which are curvacin A (sakacin A), divercin V41, enterocin I (L50A), enterocin L50B, pediocin PA-1 (AcH ) and sakacin P.
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CN105861522A (en) * | 2016-06-28 | 2016-08-17 | 江苏盐城源耀生物科技有限公司 | Antibacterial peptide Enterocin P and preparation method and application thereof |
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WO2006108215A1 (en) * | 2005-04-15 | 2006-10-19 | Charles Sturt University | Anti-fungal treatments |
CN105861522A (en) * | 2016-06-28 | 2016-08-17 | 江苏盐城源耀生物科技有限公司 | Antibacterial peptide Enterocin P and preparation method and application thereof |
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