CN112924689B - Diabetes diagnosis kit based on quantitative determination of polypeptide combined marker and method thereof - Google Patents
Diabetes diagnosis kit based on quantitative determination of polypeptide combined marker and method thereof Download PDFInfo
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Abstract
本发明涉及医学生物检测领域,具体为多肽组合标志物在制备糖尿病诊断试剂或试剂盒中的新用途。本发明提供了一种利用液相色谱‑质谱多反应监测(multiple reaction monitoring,MRM)定量检测血清中内源多肽的方法及试剂盒,通过本发明中的试剂及方法,可以定量测定人血清中内源4个多肽标志物的含量,进而基于二元逻辑回归方程计算所述组合标志物变量以及确定的截点值,用于糖尿病的预警和/或诊断。本发明的试剂盒和检测方法稳定性好,特异性高,具有临床推广的潜力。
The invention relates to the field of medical biological detection, in particular to a novel use of a polypeptide combination marker in the preparation of a diabetes diagnostic reagent or kit. The present invention provides a method and kit for quantitatively detecting endogenous polypeptides in serum by using liquid chromatography-mass spectrometry multiple reaction monitoring (MRM). The content of the four endogenous polypeptide markers is then calculated based on the binary logistic regression equation, and the combined marker variable and the determined cut-off value are used for early warning and/or diagnosis of diabetes. The kit and the detection method of the invention have good stability and high specificity, and have the potential of clinical promotion.
Description
技术领域technical field
本发明涉及医学生物检测技术及代谢性疾病的诊断、预防和治疗领域,具体地说,是基于定量测定人血浆内源多肽的方法及多肽组合标志物在制备糖尿病早期预警和/或诊断的试剂盒和方法。The present invention relates to medical biological detection technology and the fields of diagnosis, prevention and treatment of metabolic diseases, in particular, to the preparation of reagents for early warning and/or diagnosis of diabetes based on a method for quantitative determination of endogenous polypeptides in human plasma and a combination marker of polypeptides Box and method.
背景技术Background technique
据2017年国际糖尿病联盟数据显示,全球糖尿病患者已有4.15亿,其中2型糖尿病(type 2 diabetes,T2DM)占95%以上。预计到2030年,全球糖尿病患病人数将增至5.52亿。糖尿病是继心血管疾病和肿瘤后危害人类健康的第3大疾病。目前,虽然2型糖尿病的诊断标准已明确,具有口服葡萄糖耐量试验(OGTT)等金标准,但因其糖尿病初期无明显症状且潜伏期长,至症状出现或临床确诊后再干预治疗,病情往往已不可逆转,错失去了最佳干预时期,寻找用于早期预警及诊断的生物标志物对于研究糖尿病的病理、分类、早期诊断、延缓及预防糖尿病的发生具有重要意义。According to data from the International Diabetes Federation in 2017, there are 415 million people with diabetes worldwide, of which
采用多组学技术发现新的诊断标志物是当前研究的热点。多肽在糖尿病的发病过程及干预治疗中具有重要地位,如诸多的多肽药物如胰高血糖素样肽-1(glucagon-likepeptide 1,GLP-1)类似物、度拉鲁肽(dulaglutide)、脑钠肽(brain natriureticpeptide,BNP)等肽类制剂。多肽可以体现不同生理病理条件下蛋白的合成、加工和降解过程,同时,对基因的表达、物质代谢等过程又有调节作用,因此,采用多肽组学技术发现新型多肽生物标志物用于糖尿病的早期预警/诊断具有巨大潜力。The use of multi-omics technology to discover new diagnostic markers is a current research hotspot. Polypeptides play an important role in the pathogenesis and intervention of diabetes, such as many peptide drugs such as glucagon-like peptide 1 (GLP-1) analogs, dulaglutide, brain Natriuretic peptide (brain natriureticpeptide, BNP) and other peptide preparations. Peptides can reflect the synthesis, processing and degradation of proteins under different physiological and pathological conditions, and at the same time, they have regulatory effects on gene expression, material metabolism and other processes. Early warning/diagnosis has great potential.
标志物验证:目前已发现的2型糖尿病潜在生物标志物包括基因变异、RNA转录子、多肽、蛋白质、脂质和小分子代谢产物(支链氨基酸/芳香氨基酸)等,但多为来自并发症样本,如糖尿病肾病,糖尿病伴高血压及高血糖样本,妊娠糖尿病等(中国专利CN106645757A;医学综述,2019,(20),4080-4086;Mol Cell Proteomics,2010,9(10),2099-2108;中华实用诊断与治疗杂志,2018,32(01),1-4),一般出现并发症,糖尿病已处于确诊且不可逆转的后期阶段,缺少针对糖尿病本身及用于早期诊断的生物标志物;此外,采用多组学技术筛选出差异标志物后缺少进一步的临床样本验证工作,因此导致临床应用价值有限;或采用ELISA或Western blot验证,实验成本高且通量不足(中国专利CN108957011;色谱,2019,37(8):853-862;中国全科医学,2014,(21),2524-2527)。Marker verification: The potential biomarkers of
基于以上研究中存在的问题,本发明采用非靶向多肽组学和靶向定量多肽组学结合的方法,该方法具有通量高、数据重复性好、灵敏度高的特点。采用从发现到验证的策略筛选潜在的诊断标志物,从糖尿病前期临床样本(无并发症)中成功筛选并验证人血清中内源多肽的组合标志物,可用于糖尿病的早期预警及/或诊断,该组合标志物的诊断灵敏度和特异性均良好,并制备了一种可用于定量测定目标多肽含量及用于糖尿病早期预警和/或诊断的试剂盒,该试剂盒目前还未见报道。Based on the problems existing in the above research, the present invention adopts a method combining non-targeted peptidomics and targeted quantitative peptidomics, which has the characteristics of high throughput, good data repeatability and high sensitivity. Using a discovery-to-validation strategy to screen potential diagnostic markers, successfully screen and validate combined markers of endogenous polypeptides in human serum from pre-diabetic clinical samples (without complications), which can be used for early warning and/or diagnosis of diabetes , the diagnostic sensitivity and specificity of the combined marker are good, and a kit for quantitative determination of target polypeptide content and for early warning and/or diagnosis of diabetes has been prepared, which has not yet been reported.
发明内容SUMMARY OF THE INVENTION
本发明的目的是针对糖尿病早期预警诊断标志物匮乏及灵敏度低、特异性低等问题,采用非靶向多肽组学发现差异多肽及靶向多肽组学验证的策略,提供一种组合多肽标志物在糖尿病早期预警/诊断中的应用及试剂盒,同时提供了可用于上述组合多肽标志物定量分析检测的方法。The purpose of the present invention is to solve the problems of lack of early warning diagnostic markers for diabetes, low sensitivity and low specificity, and to provide a combination of peptide markers by using non-targeted peptidomics to discover differential peptides and targeted peptidomics to verify. The application and kit in early warning/diagnosis of diabetes also provide a method for quantitative analysis and detection of the above-mentioned combined polypeptide markers.
为实现上述目的,本发明采用的技术方案如下:For achieving the above object, the technical scheme adopted in the present invention is as follows:
(1)采用非靶向多肽组学的方法,对正常人、糖尿病初期患者、糖尿病患者(无高血压、高血脂等并发症)血清内源多肽进行非靶向分析,用无标定量的方法对差异多肽进行筛选,筛选条件包括P值、可信的置信区间等,保留满足条件的差异多肽。(1) Non-targeted analysis of serum endogenous polypeptides in normal people, patients with early stage diabetes, and diabetic patients (without complications such as hypertension and hyperlipidemia) using non-targeted peptide omics methods, using standard-free quantitative methods Screen the differential polypeptides, and the screening conditions include P value, credible confidence interval, etc., and retain the differential polypeptides that meet the conditions.
(2)对(1)中差异多肽,通过合成标肽及二甲基标记,采用靶向多肽组学的方法,在另批次健康人/糖尿病患者(无高血压、高血脂等并发症)临床样本中,对上述差异多肽进行验证。并考察多肽的稳定性,初步评估用于制备开发糖尿病早期预警/诊断试剂盒的潜力。(2) For the differential peptides in (1), by synthesizing standard peptides and dimethyl labeling, using the method of targeted peptide omics, in another batch of healthy people/diabetic patients (without complications such as hypertension and hyperlipidemia) In clinical samples, the above differential peptides were verified. The stability of the peptide was also investigated, and the potential for the preparation and development of early warning/diagnosis kits for diabetes was preliminarily evaluated.
(3)采用SPSS统计软件,通过二元逻辑回归分析,回归为组合标志物变量,采用ROC(receiver operating characteristic)曲线来评价组合标志物的灵敏性和特异性。(3) Using SPSS statistical software, through binary logistic regression analysis, the regression was used as a combined marker variable, and the ROC (receiver operating characteristic) curve was used to evaluate the sensitivity and specificity of the combined marker.
(4)组合标志物的使用:在糖尿病患者中,多肽GVLSSRQLGLPGPPDVPDHAAYHPF(245),GVLSSRQLGLPGPPDVPDHAA(244),GLPGPPDVPDHAAYHPF(251),GSEMVVAGKLQ(261)的含量发生明显变化。4条多肽回归为组合标志物变量X,二元逻辑回归方程为:(4) Use of combined markers: In diabetic patients, the contents of polypeptides GVLSSRQLGLPGPPDVPDHAAYHPF(245), GVLSSRQLGLPGPPDVPDHAA(244), GLPGPPDVPDHAAYHPF(251) and GSEMVVAGKLQ(261) changed significantly. The four polypeptides are regressed as the combined marker variable X, and the binary logistic regression equation is:
X=1.630+5.279×C(245)+8.971×C(244)-4.232×C(251)-14.175×C(261)X=1.630+5.279×C(245)+8.971×C(244)-4.232×C(251)-14.175×C(261)
Prob(糖尿病)=1/[1+e-X]Prob(diabetes)=1/[1+e -X ]
其中C表示血浆多肽的浓度;e为欧拉数,自然对数函数的底数;Prob为组合标志物变量值,当P值大于等于0.55时,诊断为糖尿病患者,否则为无糖尿病人群。Among them, C represents the concentration of plasma polypeptide; e is the Euler number, the base of the natural logarithmic function; Prob is the variable value of the combined marker. When the P value is greater than or equal to 0.55, a diabetic patient is diagnosed, otherwise it is a non-diabetic population.
(5)诊断系统所包括的装置:色谱柱,检测仪器为液相色谱-质谱联用仪。(5) Devices included in the diagnostic system: a chromatographic column, and the detection instrument is a liquid chromatography-mass spectrometer.
(6)确定试剂盒组成,共包括A,B,C,D,E,F,G七种试剂或溶液,具体为:(6) Determine the composition of the kit, including seven reagents or solutions of A, B, C, D, E, F, and G, specifically:
二甲基标记试剂:A,PBS缓冲液(PH=8.0~8.4);B,体积浓度4%甲醛(轻标处理试剂)和/或体积浓度4%氘代甲醛(中标处理试剂);C,0.6M氰基硼氢化钠(NaBH3CN);D,质量浓度1%氨水;E,体积浓度5%甲酸溶液;Dimethyl labeling reagent: A, PBS buffer (PH=8.0~8.4); B, 4% formaldehyde by volume (light standard treatment reagent) and/or 4% deuterated formaldehyde by volume (successful standard treatment reagent); C, 0.6M sodium cyanoborohydride (NaBH3CN); D, 1% ammonia water by mass; E, 5% formic acid solution by volume;
标准品溶液F:多肽(245,244,251,261)经二甲基轻标试剂处理得到的轻标溶液,经干燥、除盐、再次干燥后,溶于体积浓度0.1%-1%的甲酸,多肽的终浓度分别为10-40μg/mL;Standard solution F: The light standard solution obtained by the treatment of polypeptide (245, 244, 251, 261) with dimethyl light standard reagent, after drying, desalting and drying again, dissolved in 0.1%-1% formic acid by volume , and the final concentrations of the peptides were 10-40 μg/mL;
含稳定同位素的内标溶液G:多肽(245,244,251,261)经二甲基标记中标试剂处理得到的中标溶液,经干燥、除盐、再次干燥后,溶于体积浓度0.1%-1%的甲酸,多肽的终浓度分别为0.3-10μg/mL。Internal standard solution G containing stable isotopes: The winning standard solution obtained by treating polypeptide (245, 244, 251, 261) with dimethyl-labeled winning standard reagent, after drying, desalting, and drying again, dissolved in a volume concentration of 0.1%-1 % formic acid, and the final concentrations of the peptides were 0.3-10 μg/mL, respectively.
具体步骤为:The specific steps are:
1)超滤:取10-50μL血浆样品,10K Da超滤管离心提取内源多肽;干燥即得内源多肽样品;1) Ultrafiltration: take 10-50 μL plasma sample, centrifuge the endogenous polypeptide in a 10K Da ultrafiltration tube; dry to obtain the endogenous polypeptide sample;
2)轻标标记:将内源多肽样品采用上述二甲基标记轻标试剂A、B、C、D、E依次处理,得内源多肽二甲基标记样品(轻标),干燥;2) Light labeling: the endogenous polypeptide samples are sequentially treated with the above-mentioned dimethyl labeling light labeling reagents A, B, C, D, and E to obtain an endogenous polypeptide dimethyl labeling sample (light labeling), which is dried;
3)除盐:采用C18填料的TIP头或固相萃取小柱除盐,干燥;-80℃冰箱冷藏备用;3) Desalting: use a C18 filler TIP head or solid phase extraction cartridge for desalting and drying; refrigerate at -80°C for later use;
4)供试品溶液制备:将内源多肽轻标标记样品用10-50μL0.1%-1%的甲酸溶液反溶,20000g离心5-8分钟,取上清液10-40μL,加入10-40μL内标溶液G即得待测供试品溶液;4) Preparation of the test solution: reversely dissolve the endogenous polypeptide light-labeled sample with 10-50μL of 0.1%-1% formic acid solution, centrifuge at 20,000g for 5-8 minutes, take 10-40μL of the supernatant, add 10- 40 μL of internal standard solution G is the solution to be tested;
5)标准曲线的制备:标准品溶液F用0.1%-1%的甲酸溶液稀释为系列标准品溶液,取1-10μL标准品溶液,加入10-40μL空白血浆样品及10-40μL内标溶液G即可得系列标准曲线样品,其终浓度范围为5ng/mL-1000ng/mL;其中空白血浆样品为经超滤提取的内源多肽,依次用A、D、E处理并进行除盐、干燥后溶于0.1%-1%的甲酸溶液而得;采用液相色谱-质谱多反应监测(LC-MS/MRM)测定多肽的轻标及中标离子峰的强度,以二者峰面积之比对样品浓度拟合标准曲线;5) Preparation of standard curve: standard solution F is diluted with 0.1%-1% formic acid solution into a series of standard solution, take 1-10 μL standard solution, add 10-40 μL blank plasma sample and 10-40 μL internal standard solution G A series of standard curve samples can be obtained, with a final concentration range of 5ng/mL-1000ng/mL; the blank plasma sample is the endogenous polypeptide extracted by ultrafiltration, treated with A, D, E in turn, desalted and dried. Dissolved in 0.1%-1% formic acid solution; liquid chromatography-mass spectrometry multiple reaction monitoring (LC-MS/MRM) was used to measure the intensities of the light and middle standard ion peaks of the peptide, and the samples were compared with the ratio of the peak areas of the two. Concentration fitting standard curve;
6)多肽含量测定:将制备的标准曲线样品、临床样本供试品溶液分别采用LC-MS/MRM分析,以外标法计算目标多肽的含量。6) Determination of polypeptide content: The prepared standard curve sample and the clinical sample test solution were analyzed by LC-MS/MRM respectively, and the content of the target polypeptide was calculated by the external standard method.
(7)仪器分析条件(7) Instrument analysis conditions
所述液相色谱操作条件:Waters UPLC液相色谱仪,色谱柱,Acquity UPLC@HSS,T3,1.8μm;流动相,乙腈-0.1%甲酸(A),0.1%甲酸水溶液(B)。梯度条件如下:The liquid chromatography operating conditions: Waters UPLC liquid chromatograph, chromatographic column, Acquity UPLC@HSS, T3, 1.8 μm; mobile phase, acetonitrile-0.1% formic acid (A), 0.1% formic acid aqueous solution (B). The gradient conditions are as follows:
表1液相色谱条件Table 1 Liquid chromatography conditions
所述的质谱条件,Qtrap 5500质谱仪,质谱多反应监测(multiple reactionmonitoring,MRM),目标4个多肽的MRM定量离子对及质谱参数如表2所示,质谱图如图1所示。The mass spectrometry conditions, Qtrap 5500 mass spectrometer, mass spectrometry multiple reaction monitoring (MRM), MRM quantitative transitions and mass spectrometry parameters of the
表2目标多肽的定量离子对Table 2 Quantitative transitions of target peptides
(7)采用血清样本测试本发明的应用效果。使用组合标志物正常人与糖尿病患者可得到良好的区分,如图2所示,其AUC值为0.864,灵敏度为0.78,特异性为0.78。最佳临界点(cut-off)为0.55。大于等于该临界点值诊断为糖尿病。(7) Using serum samples to test the application effect of the present invention. Using the combined marker, normal subjects and diabetic subjects were well differentiated, as shown in Figure 2, with an AUC value of 0.864, a sensitivity of 0.78, and a specificity of 0.78. The optimal cut-off is 0.55. Diabetes mellitus is diagnosed if the value is greater than or equal to the cut-off point.
(8)多肽标志物的稳定性考察:本专利涉及的4条多肽在4℃冰箱中可保存2月,无论轻标样品还是中标样品,均未出现明显降解,说明本试剂盒稳定性较好。(8) Study on the stability of polypeptide markers: The four polypeptides involved in this patent can be stored in a refrigerator at 4°C for 2 months, and no significant degradation has occurred in either the light-labeled samples or the winning-labeled samples, indicating that the kit has good stability. .
本发明的优点在于:The advantages of the present invention are:
1)本发明生物标志物的发现过程包括采用非靶向代谢组学方法筛选差异多肽,进而通过多肽合成确证结构,以及采用质谱多反应监测(multiple reaction monitoring,MRM)的靶向定量多肽组学方法对不同批次的临床样本进行验证三个过程,其临床参考价值和可信度较高。1) The discovery process of the biomarkers of the present invention includes using non-targeted metabolomics to screen differential polypeptides, and then confirming the structure through polypeptide synthesis, and using mass spectrometry multiple reaction monitoring (multiple reaction monitoring, MRM) targeted quantitative peptidomics Methods Different batches of clinical samples were verified in three processes, and their clinical reference value and reliability were high.
2)本发明提供了一种早期预警/诊断糖尿病的试剂盒,通过应用该试剂盒,可方便实现对待检临床样本中目标多肽的精确定量测定,进而应用基于二元逻辑回归方程计算所述组合标志物变量Prob以及判断截点值(cut-off),对待检样本罹患糖尿病的风险及诊断作出初步判断。所述试剂盒具有稳定性好、诊断特异性高和灵敏度高的特点,应用于辅助早起诊断,具有较高的开发应用的价值。2) The present invention provides a kit for early warning/diagnosis of diabetes. By applying the kit, accurate quantitative determination of target polypeptides in clinical samples to be tested can be conveniently achieved, and then the combination based on binary logistic regression equation can be calculated. The marker variable Prob and the cut-off value (cut-off) are used to make a preliminary judgment on the risk and diagnosis of diabetes in the sample to be tested. The kit has the characteristics of good stability, high diagnostic specificity and high sensitivity, is applied to assist early diagnosis, and has high development and application value.
附图说明Description of drawings
图1多肽的MRM检测图谱Figure 1 MRM detection map of peptides
图2 ROC诊断模型;图注:AUC曲线下面积;sensitivity灵敏度,specificity特异性,criterion(cut-off值)界值Figure 2 ROC diagnostic model; legend: area under the AUC curve; sensitivity, specificity, criterion (cut-off value) threshold
具体实施方式Detailed ways
下面结合实施例对本发明提供的具体实施方式作详细说明。但这些实施例仅是范例性的,并不对本发明的范围构成任何限制。在不偏离本发明的精神和范围下可以对本发明的技术方案的细节和形式进行修改或替换,但这些修改和替换均落入本发明的保护范围内。The specific embodiments provided by the present invention will be described in detail below with reference to the examples. However, these examples are only exemplary and do not constitute any limitation to the scope of the present invention. The details and forms of the technical solutions of the present invention may be modified or replaced without departing from the spirit and scope of the present invention, but these modifications and replacements all fall within the protection scope of the present invention.
实施例1:无标定量法筛选差异多肽Example 1: Screening of differential polypeptides by standard-free quantitative method
临床样本:23例人血清样品(包括7例健康者血清样本,7例糖尿病前期患者血清样本和9例2型糖尿病患者血清样本)来自上海第六人民医院。糖尿病前期患者和2型糖尿病患者由专家确诊或排除,三组受试人群的年龄、体重指数(BMI)、血糖等指标均相匹配。血液样品获得当地医院伦理委员会的批准,所有受试者都签署知情同意书。血液样品采集后保存于-80℃冰箱。Clinical samples: 23 human serum samples (including 7 healthy people, 7 prediabetic patients, and 9
血清内源性多肽的提取:采用超滤离心法。具体操作流程:从-80℃冰箱中取出血样并在冰浴中解冻,涡旋混匀,20000g离心5min弃脂质。每例血清样本取25μL,加入125μL去离子水并煮沸变性5min。冷却至室温后,加入150μL体积浓度40%乙腈-0.1%甲酸的水溶液,涡旋混匀并于冰浴中静置40min。然后将样品转移到截留分子量为10kDa超滤管中,在6000g,4℃条件下离心20min,并用300μL体积浓度20%乙腈-0.1%甲酸的水溶液清洗滤饼两次。收集滤液,冷冻干燥,经除盐后,储存在-80℃冰箱中备用。进样分析前,样品复溶到25μL体积浓度0.1%FA溶液中,涡旋混匀2min,20000g,4℃离心5min,取上清液用于nano-LC-MS/MS分析。Extraction of serum endogenous polypeptides: Ultrafiltration centrifugation was used. Specific operation process: Take the blood sample from the -80°C refrigerator and thaw it in an ice bath, vortex to mix, and centrifuge at 20,000g for 5min to discard the lipid. Take 25 μL of each serum sample, add 125 μL of deionized water, and boil for 5 min for denaturation. After cooling to room temperature, 150 μL of an aqueous solution of 40% acetonitrile-0.1% formic acid by volume was added, mixed by vortex and left in an ice bath for 40 min. The sample was then transferred to an ultrafiltration tube with a molecular weight cut-off of 10 kDa, centrifuged at 6000 g for 20 min at 4°C, and the filter cake was washed twice with 300 μL of an aqueous solution of 20% acetonitrile-0.1% formic acid by volume. The filtrate was collected, freeze-dried, and stored in a -80°C refrigerator for later use after desalting. Before injection and analysis, the samples were redissolved in 25 μL of 0.1% FA solution, vortexed for 2 min, centrifuged at 20,000 g for 5 min at 4°C, and the supernatant was taken for nano-LC-MS/MS analysis.
LC-MS/MS数据采集:Nano-RPLC-MS/MS系统,包括含四元梯度泵的高效液相色谱(Ultimate 3000)、自动进样器和线性离子阱-静态轨道阱(LTQ-Orbitrap Elite),trap柱(3cm×200μm,C18);分析柱(12cm×150μm,C18)。流动相组成:A相为0.1%的甲酸水溶液,B相为80%乙腈含0.1%甲酸溶液。分离梯度设为:0-2%B,10min;2-5%B,3min;5-28%B,60min;28-45%B,15min;45-95%B,1min;95%B,5min。流速为0.5μL/min。质谱条件:LTQ离子传输管的温度设为275℃,电喷雾电压设为2.7kV。所有的数据采集模式均为数据依赖模式(data-dependent mode,DDA),质谱全扫描在Orbitrap中采集,扫描范围为200-2000Da,分辨率设为12000。二级质谱扫描在LTQ中采集,采用碰撞诱导解离(CID)碎裂方式。利用Xcalibur软件(2.1版本,Thermo公司)进行系统控制和数据收集。LC-MS/MS data acquisition: Nano-RPLC-MS/MS system including high performance liquid chromatography with quaternary gradient pump (Ultimate 3000), autosampler and linear ion trap-static orbitrap (LTQ-Orbitrap Elite) ), trap column (3cm×200μm, C18); analytical column (12cm×150μm, C18). Mobile phase composition: A phase is 0.1% formic acid aqueous solution, B phase is 80% acetonitrile containing 0.1% formic acid solution. The separation gradient was set to: 0-2%B, 10min; 2-5%B, 3min; 5-28%B, 60min; 28-45%B, 15min; 45-95%B, 1min; 95%B, 5min . The flow rate was 0.5 μL/min. Mass spectrometry conditions: the temperature of the LTQ ion transfer tube was set to 275°C, and the electrospray voltage was set to 2.7 kV. All data acquisition modes were data-dependent mode (DDA), and the full scan of mass spectrometry was acquired in Orbitrap with a scan range of 200-2000 Da and a resolution of 12,000. MS scans were acquired in the LTQ using collision-induced dissociation (CID) fragmentation. System control and data collection were performed using Xcalibur software (version 2.1, Thermo Corporation).
质谱数据检索分析:质谱数据利用Mascot软件进行数据检索,检索数据库为人源库(UniProt,约17万蛋白)。检索参数设为:甲硫氨酸残基(+15.9949Da)为可变修饰,无酶切,母离子质量误差为20ppm,二级碎片离子误差为0.8Da。多肽筛选门槛设定为,得分值高于20,假阳性率(FDR)小于1%。多肽定量采用MaxQuant软件进行数据分析。假阳性率(falsediscovery rate,FDR)为0.01。Mass spectrometry data retrieval and analysis: Mass spectrometry data were retrieved using Mascot software, and the retrieval database was a human library (UniProt, about 170,000 proteins). The search parameters were set as follows: the methionine residue (+15.9949Da) was a variable modification, without enzyme digestion, the mass error of the parent ion was 20ppm, and the error of the secondary fragment ion was 0.8Da. Peptide screening thresholds were set to score values above 20 with a false positive rate (FDR) of less than 1%. Peptide quantification was performed using MaxQuant software for data analysis. The false positive rate (false discovery rate, FDR) was 0.01.
差异多肽筛选:共筛选到163条差异多肽。进一步选择其中差异倍数变化较大的21条用于进一步临床样本验证,差异多肽信息如表3所示:Differential peptide screening: A total of 163 differential peptides were screened. The 21 samples with large differential fold changes were further selected for further clinical sample verification. The differential peptide information is shown in Table 3:
表3拟进一步验证的差异多肽信息Table 3 Differential peptide information to be further verified
注:上调,下调的含义为,PRE组(初期糖尿病组)或T2D组(糖尿病组)多肽的含量与对照组相应多肽含量的比值,大于1则为上调;小于1则为下调。Note: Up-regulation and down-regulation mean the ratio of the content of polypeptides in the PRE group (initial diabetes group) or T2D group (diabetes group) to the corresponding polypeptide content in the control group. Greater than 1 means up-regulation; less than 1 means down-regulation.
实施例2:二甲基标记多肽及靶向MRM验证Example 2: Dimethyl-labeled polypeptides and targeted MRM verification
临床样本:18例人血清样品(包括9例健康者血清样本,9例2型糖尿病患者血清样本)来自上海第六人民医院。2型糖尿病患者由专家确诊或排除,三组受试人群的年龄、体重指数(BMI)、血糖等指标均相匹配。糖尿病患者均无高血压、高血糖等并发症。血液样品获得当地医院伦理委员会的批准,所有受试者都签署知情同意书。血液样品采集后保存于-80℃冰箱。Clinical samples: 18 human serum samples (including 9 serum samples from healthy individuals and 9 serum samples from patients with
血清内源多肽的提取:参考实施例1。Extraction of Serum Endogenous Polypeptides: Reference Example 1.
多肽的合成:根据上述表3信息,合成标肽通过比较其MS图谱进行结构的再次确证。Synthesis of peptides: According to the information in Table 3 above, the structure of the synthetic target peptides was reconfirmed by comparing their MS spectra.
二甲基标记:采用下述试剂盒,制备中标内标溶液及制备标准曲线样品和临床样本供试品溶液。试剂盒组成:Dimethyl labeling: Use the following kits to prepare the winning standard internal standard solution and prepare the standard curve sample and clinical sample test solution. Kit composition:
二甲基标记试剂:A,PBS缓冲液(PH=8.0);B,体积浓度4%甲醛(轻标处理试剂)和/或体积浓度4%氘代甲醛(中标处理试剂);C,0.6M氰基硼氢化钠(NaBH3CN);D,质量浓度1%氨水;E,体积浓度5%甲酸溶液;Dimethyl labeling reagent: A, PBS buffer (PH=8.0); B, 4% formaldehyde by volume (light standard treatment reagent) and/or 4% deuterated formaldehyde (successful standard treatment reagent) by volume; C, 0.6M Sodium cyanoborohydride (NaBH3CN); D, 1% ammonia water by mass; E, 5% formic acid solution by volume;
标准品溶液F:多肽(245,244,251,261)经二甲基轻标试剂处理得到的轻标溶液,经干燥、除盐、再次干燥后,溶于体积浓度1%的甲酸,多肽的终浓度分别为40μg/mL;Standard solution F: The light standard solution obtained by the treatment of polypeptides (245, 244, 251, 261) with dimethyl light standard reagent, after drying, desalting, and drying again, dissolved in formic acid with a volume concentration of 1%. The final concentrations were 40 μg/mL;
含稳定同位素的内标溶液G:多肽(245,244,251,261)经二甲基标记中标试剂处理得到的中标溶液,经干燥、除盐、再次干燥后,溶于体积浓度0.1%-1%的甲酸,多肽的终浓度分别为10μg/mL。Internal standard solution G containing stable isotopes: The winning standard solution obtained by treating polypeptide (245, 244, 251, 261) with dimethyl-labeled winning standard reagent, after drying, desalting, and drying again, dissolved in a volume concentration of 0.1%-1 % formic acid, and the final concentrations of the peptides were 10 μg/mL.
具体步骤为:The specific steps are:
1)超滤:取25μL血浆样品,10K Da超滤管离心提取内源多肽;干燥即得内源多肽样品;1) Ultrafiltration: take 25μL of plasma sample, centrifuge the endogenous polypeptide in a 10K Da ultrafiltration tube; dry to obtain the endogenous polypeptide sample;
2)轻标标记:将内源多肽样品采用上述二甲基标记轻标试剂A、B、C、D、E依次处理,得内源多肽二甲基标记样品(轻标),干燥;2) Light labeling: the endogenous polypeptide samples are sequentially treated with the above-mentioned dimethyl labeling light labeling reagents A, B, C, D, and E to obtain an endogenous polypeptide dimethyl labeling sample (light labeling), which is dried;
3)除盐:采用C18填料的TIP头或固相萃取小柱除盐,干燥;-80℃冰箱冷藏备用;3) Desalting: use a C18 filler TIP head or solid phase extraction cartridge for desalting and drying; refrigerate at -80°C for later use;
4)供试品溶液制备:将内源多肽轻标标记样品用30μL1%的甲酸溶液反溶,20000g离心8分钟,取上清液25μL,加入10μL内标溶液G即得待测供试品溶液;4) Preparation of test solution: reversely dissolve the endogenous polypeptide light-labeled sample with 30 μL of 1% formic acid solution, centrifuge at 20,000g for 8 minutes, take 25 μL of supernatant, and add 10 μL of internal standard solution G to obtain the test solution to be tested. ;
5)标准曲线的制备:标准品溶液F用1%的甲酸溶液稀释为系列标准品溶液,取5μL标准品溶液,加入40μL空白血浆样品及10μL内标溶液G即可得系列标准曲线样品,其终浓度范围为5ng/mL,10ng/mL,50ng/mL,100ng/mL,500ng/mL,1000ng/mL;其中空白血浆样品为经超滤提取的内源多肽,依次用A、D、E处理并进行除盐、干燥后溶于1%的甲酸溶液而得;采用液相色谱-质谱多反应监测(LC-MS/MRM)测定多肽的轻标及中标离子峰的强度,以二者峰面积之比对样品浓度拟合标准曲线;5) Preparation of standard curve: The standard solution F is diluted with 1% formic acid solution into a series of standard solutions, 5 μL of standard solution is taken, 40 μL of blank plasma sample and 10 μL of internal standard solution G are added to obtain a series of standard curve samples. The final concentration range is 5ng/mL, 10ng/mL, 50ng/mL, 100ng/mL, 500ng/mL, 1000ng/mL; the blank plasma sample is the endogenous polypeptide extracted by ultrafiltration, which is treated with A, D and E in turn After desalting and drying, it was dissolved in 1% formic acid solution; liquid chromatography-mass spectrometry multiple reaction monitoring (LC-MS/MRM) was used to determine the intensities of the light standard and medium standard ion peaks of the polypeptide, and the peak area of the two Fit the standard curve to the concentration of the sample;
6)多肽含量测定:将制备的标准曲线样品、临床样本供试品溶液分别采用LC-MS/MRM分析,以外标法计算目标多肽的含量。6) Determination of polypeptide content: The prepared standard curve sample and the clinical sample test solution were analyzed by LC-MS/MRM respectively, and the content of the target polypeptide was calculated by the external standard method.
仪器分析条件Instrument analysis conditions
所述液相色谱操作条件:Waters UPLC液相色谱仪,色谱柱,Acquity UPLC@HSS,T3,1.8μm;流动相,乙腈-0.1%甲酸(A),0.1%甲酸水溶液(B)。梯度条件如表1所示。The liquid chromatography operating conditions: Waters UPLC liquid chromatograph, chromatographic column, Acquity UPLC@HSS, T3, 1.8 μm; mobile phase, acetonitrile-0.1% formic acid (A), 0.1% formic acid aqueous solution (B). The gradient conditions are shown in Table 1.
所述的质谱条件,Qtrap 5500质谱仪,质谱多反应监测(multiple reactionmonitoring,MRM),目标21条多肽的MRM定性、定量离子对及质谱参数如表4所示。The mass spectrometry conditions, Qtrap 5500 mass spectrometer, mass spectrometry multiple reaction monitoring (MRM), MRM qualitative and quantitative transitions and mass spectrometry parameters of the target 21 polypeptides are shown in Table 4.
表4 21条多肽的定性、定量离子对Table 4 Qualitative and quantitative transitions of 21 polypeptides
注:L表示轻标,M表示中标。Note: L means light bid, M means successful bid.
靶向验证:定量结果表明,其中的4条多肽在正常人和糖尿病样本中出现明显差异,可用于变量回归诊断模型。从而进一步优化4条多肽的定量离子对,如表2所示。Targeted validation: Quantitative results show that 4 of the peptides are significantly different between normal and diabetic samples, which can be used for variable regression diagnostic models. Thus, the quantitative transitions of the four polypeptides were further optimized, as shown in Table 2.
稳定性评价:进一步评价了目标多肽的稳定性,结果表明4条多肽在4℃冰箱中放置2个月,未发现明显降解,具备用于诊断标志物的潜力。Stability evaluation: The stability of the target polypeptide was further evaluated. The results showed that the four polypeptides were placed in a refrigerator at 4°C for 2 months, and no obvious degradation was found, and they had the potential to be used as diagnostic markers.
实施例3:早期预警/诊断标志物的确定Example 3: Determination of Early Warning/Diagnostic Markers
由上述定量结果可知,在健康人和糖尿病患者两组样本中,多肽GVLSSRQLGLPGPPDVPDHAAYHPF(245),GVLSSRQLGLPGPPDVPDHAA(244),GLPGPPDVPDHAAYHPF(251),GSEMVVAGKLQ(261)的含量发生明显变化。From the above quantitative results, it can be seen that the contents of the polypeptides GVLSSRQLGLPGPPDVPDHAAYHPF(245), GVLSSRQLGLPGPPDVPDHAA(244), GLPGPPDVPDHAAYHPF(251) and GSEMVVAGKLQ(261) in the healthy and diabetic patients were significantly changed.
采用SPSS统计软件,通过二元逻辑回归分析,将4条多肽回归为组合标志物变量,采用ROC(receiver operating characteristic)曲线来评价组合标志物的灵敏性和特异性。以AUC大于0.8确定候选标志物。Using SPSS statistical software, through binary logistic regression analysis, the four peptides were regressed as combined marker variables, and the ROC (receiver operating characteristic) curve was used to evaluate the sensitivity and specificity of the combined markers. Candidate markers were identified with AUC greater than 0.8.
4条多肽回归为组合标志物变量X,二元逻辑回归方程为:The four polypeptides are regressed as the combined marker variable X, and the binary logistic regression equation is:
X=1.630+5.279×C(245)+8.971×C(244)-4.232×C(251)-14.175×C(261)X=1.630+5.279×C(245)+8.971×C(244)-4.232×C(251)-14.175×C(261)
Prob(糖尿病)=1/[1+e-X]Prob(diabetes)=1/[1+e -X ]
其中C表示血浆多肽的浓度;e为欧拉数,自然对数函数的底数;Prob为组合标志物变量值,当P值大于等于0.55时,诊断为糖尿病患者,否则为无糖尿病人群。Among them, C represents the concentration of plasma polypeptide; e is the Euler number, the base of the natural logarithmic function; Prob is the variable value of the combined marker. When the P value is greater than or equal to 0.55, a diabetic patient is diagnosed, otherwise it is a non-diabetic population.
截点值的确定依据为根据联合标志物变量P值作受试者工作特征曲线(ROC曲线),取灵敏度及特异度之和最大的P值作为最佳截点值。The cut-off value was determined based on the receiver operating characteristic curve (ROC curve) based on the P value of the combined marker variable, and the P value with the largest sum of sensitivity and specificity was taken as the best cut-off value.
采用血清样本测试本发明的应用效果。使用组合标志物正常人与糖尿病患者可得到良好的区分,如图2所示,其AUC值为0.864,灵敏度为0.78,特异性为0.78。说明本发明的诊断模型具有较好的临床应用效果。Serum samples were used to test the application effect of the present invention. Using the combined marker, normal subjects and diabetic subjects were well differentiated, as shown in Figure 2, with an AUC value of 0.864, a sensitivity of 0.78, and a specificity of 0.78. It shows that the diagnostic model of the present invention has better clinical application effect.
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