Background
The new coronavirus COVID-19 has devastating effects and is an effective method for preventing virus infection. The application screens and optimizes the dominant antigen epitope fragment which can be used for preparing the novel coronavirus COVID-19 vaccine by analyzing the sequence characteristics of the novel coronavirus COVID-19, and fuses the protein fragment and the human Fc fragment to prepare the novel virus vaccine.
Disclosure of Invention
According to a first aspect of the present invention, the present invention provides a dominant epitope fragment of a novel coronavirus covi-19 vaccine, wherein the epitope fragment comprises an amino acid sequence shown in SEQ ID No.1 or a sequence derivative thereof.
According to a second aspect of the invention, there is also provided a nucleic acid molecule encoding an epitope fragment as hereinbefore described.
Further, the nucleic acid molecule comprises the polynucleotide sequence shown in SEQ ID NO.2 or a degenerate sequence thereof.
According to a third aspect of the invention, there is also provided a vector comprising a nucleic acid molecule as hereinbefore described.
According to a fourth aspect of the invention, there is also provided a cell comprising a nucleic acid molecule as hereinbefore described or a vector as hereinbefore described.
According to a fifth aspect of the present invention, there is provided a method of producing an epitope fragment as defined above, said method comprising culturing a cell as defined above under suitable conditions.
According to a sixth aspect of the present invention there is provided a vaccine comprising an epitope fragment as hereinbefore described, a nucleic acid molecule as hereinbefore described or a vector as hereinbefore described.
According to a seventh aspect of the present invention, there is provided a pharmaceutical composition comprising the epitope fragment, the nucleic acid molecule, the vector, the cell, or the vaccine, and a pharmaceutically acceptable carrier.
According to an eighth aspect of the invention there is provided a fusion protein comprising an epitope fragment as hereinbefore described.
Further, the fusion protein further comprises an immunoglobulin Fc fragment.
Further, the source of the immunoglobulin Fc fragment includes other animals such as human, mouse, rabbit, cow, goat, pig, mouse, rabbit, hamster, rat, and guinea pig.
The immunoglobulin Fc fragment may be an Fc fragment from IgG, IgA, IgD, IgE, and IgM, or an Fc fragment prepared by a combination or hybrid thereof; preferably from IgG or IgA.
Further, the immunoglobulin Fc fragment is a human IgG Fc fragment.
Further, the human IgG Fc fragment is selected from any one of Fc fragments of human IgG1, IgG2, IgG3, IgG 4.
In a particular embodiment of the invention, the human IgG Fc fragment comprises the amino acid sequence shown in SEQ ID NO.3 or a sequence derivative thereof.
In a particular embodiment of the invention, the fusion protein comprises the amino acid sequence shown in SEQ ID No.4 or a sequence derivative thereof.
According to a ninth aspect of the invention, there is provided a nucleic acid molecule encoding a fusion protein as hereinbefore described.
Further, the nucleic acid molecule comprises the polynucleotide sequence shown in SEQ ID NO.5 or a degenerate sequence thereof.
According to a tenth aspect of the present invention there is provided a vector comprising a nucleic acid molecule according to the ninth aspect.
According to an eleventh aspect of the invention, there is provided a cell comprising the nucleic acid molecule of the ninth aspect or the vector of the tenth aspect.
According to a twelfth aspect of the present invention, there is provided a method of producing a fusion protein as described above, the method comprising culturing a cell of the eleventh aspect under suitable conditions.
According to a thirteenth aspect of the present invention, there is provided a vaccine comprising the fusion protein of the preceding aspect, the nucleic acid molecule of the ninth aspect, or the vector of the tenth aspect.
According to a fourteenth aspect of the present invention, there is provided a pharmaceutical composition comprising the fusion protein of the preceding aspect, the nucleic acid molecule of the ninth aspect, the vector of the tenth aspect, the cell of the eleventh aspect, or the vaccine of the thirteenth aspect, and a pharmaceutically acceptable carrier.
According to a fifteenth aspect of the present invention there is provided a method for inducing antibodies to the novel coronavirus covi-19 in a subject, the method comprising administering to the subject a vaccine as described hereinbefore, an epitope fragment as described hereinbefore, a fusion protein as described hereinbefore, a nucleic acid molecule as described hereinbefore, a vector as described hereinbefore, a cell as described hereinbefore or a pharmaceutical composition as described hereinbefore.
According to a sixteenth aspect of the invention there is provided an antibody prepared according to the method described hereinbefore.
According to a seventeenth aspect of the present invention, there is provided a vaccine comprising an antibody or functional part thereof as described hereinbefore.
According to an eighteenth aspect of the invention, there is provided a pharmaceutical composition comprising an antibody as hereinbefore described or a vaccine as described in the seventeenth aspect.
According to a nineteenth aspect of the present invention, there is provided a method of inhibiting infection by a novel coronavirus covi-19, said method comprising administering to said subject a vaccine as described hereinbefore, an epitope fragment as described hereinbefore, a fusion protein as described hereinbefore, a nucleic acid molecule as described hereinbefore, a vector as described hereinbefore, a cell as described hereinbefore, a pharmaceutical composition as described hereinbefore or an antibody as described hereinbefore.
According to a twentieth aspect of the present invention, there is provided a method of increasing the immunogenicity of an epitope fragment as hereinbefore described, said method comprising linking said epitope fragment to an immunoglobulin Fc fragment.
The immunoglobulin Fc fragment is as described above.
According to a twenty-first aspect of the present invention, there is provided a method of preparing a fusion protein as hereinbefore described, the method comprising linking an epitope fragment as hereinbefore described to an immunoglobulin Fc fragment.
The immunoglobulin Fc fragment is as described above.
According to a twenty-second aspect of the present invention, there is provided the use of an epitope fragment as hereinbefore described for the preparation of a fusion protein as hereinbefore described, a vaccine as hereinbefore described, a pharmaceutical composition as hereinbefore described or an antibody as hereinbefore described.
According to a twenty-second aspect of the invention, there is provided the use of a fusion protein as hereinbefore described in the manufacture of a vaccine as hereinbefore described in the thirteenth or seventeenth aspect, or a pharmaceutical composition as hereinbefore described in the fourteenth or eighteenth aspect, or an antibody as hereinbefore described.
Use of a nucleic acid molecule of the second or third aspect, a vector of the fourth aspect, in the preparation of a vaccine as described above, a pharmaceutical composition as described above, or an antibody as described above.
Use of a cell according to the fifth aspect for the preparation of a pharmaceutical composition as described above, or an antibody as described above.
Use of a nucleic acid molecule according to the ninth aspect, a vector according to the tenth aspect, in the preparation of a vaccine according to the thirteenth or seventeenth aspect, a pharmaceutical composition according to the fourteenth or eighteenth aspect, or an antibody as described above.
Use of a cell of the eleventh aspect in the manufacture of a pharmaceutical composition of the fourteenth or eighteenth aspect, or an antibody as hereinbefore described.
Use of a vaccine according to the sixth aspect in the manufacture of a pharmaceutical composition as hereinbefore described, or an antibody as hereinbefore described.
Use of a vaccine according to the thirteenth aspect in the manufacture of a pharmaceutical composition according to the fourteenth or eighteenth aspect, or an antibody as hereinbefore described.
Use of a vaccine according to the seventeenth aspect in the manufacture of a pharmaceutical composition according to the eighteenth aspect, or an antibody as hereinbefore described.
Use of an epitope fragment as defined above, a fusion protein as defined above, a vaccine as defined above, a nucleic acid molecule as defined above, a vector as defined above, a cell as defined above or a pharmaceutical composition as defined above for the preparation of an antibody against the novel coronavirus COVID-19.
Use of an epitope fragment as defined above, a fusion protein as defined above, a vaccine as defined above, a nucleic acid molecule as defined above, a vector as defined above, a cell as defined above, or a pharmaceutical composition as defined above for the manufacture of a medicament for combating infection by a novel coronavirus covi-19.
The amino acid sequence derivative of the present invention is a sequence which is different from a natural amino acid sequence due to deletion, insertion, non-conservative or conservative substitution of one or more amino acid residues or a combination thereof, and is a derivative having the same biological activity as a natural amino acid sequence of fish or having improved structural stability (e.g., heat resistance, pH resistance, etc.).
The amino acid sequence derivatives of the invention have at least 30%, 40%, 50%, 60%, 70%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% sequence identity to the native amino acid sequence.
The vaccine also comprises an adjuvant, wherein the adjuvant comprises one or more of an alumina Gel adjuvant, saponin, a water-in-oil emulsion, an oil-in-water emulsion, a water-in-oil-in-water emulsion, a polymer of acrylic acid or methacrylic acid, a copolymer of maleic anhydride and alkenyl (alkenyl) derivatives, a RIBI adjuvant system, a Block co-polymer, SAF-M, monophosphoryl lipid A, Avridine lipid-amine adjuvant, escherichia coli heat-labile enterotoxin, cholera toxin, 1314, muramyl dipeptide or Gel adjuvant.
Detailed Description
Example 1 screening of dominant antigen (RBD) epitopes of a novel coronavirus COVID-19 vaccine
The dominant antigen (RBD) epitope of the novel coronavirus COVID-19 vaccine is obtained by screening, the amino acid sequence is shown as SEQ ID NO.1, and the optimized coding nucleic acid sequence is shown as SEQ ID NO. 1.
Example 2 fusion, expression and identification of the dominant epitope and Fc protein (RBD-Fc) of the novel coronavirus COVID-19 vaccine
The amino acid sequence of the adopted immunoglobulin Fc fragment is shown as SEQ ID NO.3, and the coding nucleic acid sequence is shown as SEQ ID NO. 6. The RBD-Fc amino acid sequence is shown as SEQ ID NO.4, the RBD-Fc amino acid sequence is determined and then optimized and synthesized, and the RBD-Fc coding nucleic acid sequence is shown as SEQ ID NO. 5. In order to facilitate the smooth operation of the test, a tool vector used in the plasmid construction process is a ZY-CDMO vector (which is independently designed and synthesized by Beijing Sho-derivative technology Limited company and applied for a patent, and the application number is 201910738072.9) to exchange the positions of a PmeI restriction site and a HindIII restriction site, the 5 'end of a synthesized RBD-Fc sequence is provided with an EcoRI restriction site, the 3' end is provided with a HindIII restriction site, and the synthesized RBD-Fc sequence is inserted between EcoRI and HindIII of the vector to construct and obtain the eukaryotic expression novel coronavirus COVID-19 vaccine vector plasmid.
Inoculating 30ml of cell culture shake flask with density of 0.5X 106cells/ml HEK293 cells grown to 3X 10 cell density6cell/ml, and cell survival rate of 95% or more. Inoculating cells into a shake flask at a concentration of 1-2 × 107vc/ml for later use, uniformly mixing a transfection buffer solution and plasmids, uniformly mixing the transfection buffer solution and a transfection reagent in a certain proportion, adding the transfection reagent mixed solution into the plasmid mixed solution, uniformly mixing, standing at room temperature for 10min, finally dropwise adding a transfection compound into the shake flask containing a cell suspension, and carrying out a reaction at 37 ℃ and 5% CO treatment2Culturing for 5-7 days in a shaking table with the rotation speed of 125rpm, and collecting and purifying culture solution supernatant. The RBD-Fc protein was isolated and purified by AKTA (GE corporation). Firstly, collecting eluate with pH of 3.4-3.6 (monitored at 280 nm) of Protein A affinity chromatography column (Mabselect Sure), adjusting pH to 7.0, loading onto molecular sieve chromatography column (SUPERDEX 200), monitoring and collecting sample at 280nm, ultrafiltering and concentrating to obtain RBD-FC Protein.
The SEC purity of the obtained protein was 97.04%, as shown in FIG. 1.
The SDS-PAGE of the resulting protein is shown in FIG. 2, in which lane 1 is a protein Marker and lane 2 is RBD-Fc.
Example 3 biological Activity of binding of recombinant RBD-Fc protein to hACE2 receptor
The biological activity of the recombinant RBD-Fc protein for binding to hACE2 receptor is identified by the method of flow cytometry.
The experimental steps are as follows:
1. diluted test serum was added to 96 well cell culture plates at 25. mu.l per well. Serum first dilution 1:5, four serial equal dilution were performed. Then 2019-nCoV RBD-Fc protein is added, the concentration of the RBD-Fc protein is 1 mu g/ml, and each well is 25 mu l. Shaking at room temperature for 30min, and standing at 37 deg.C for 10 min.
2. Cells were digested with pancreatin and digestion was stopped with 10ml of complete medium. Then centrifuged horizontally (1600rpm, 4 ℃, 6 min).
3. The cells were resuspended in 10ml FPBS and then centrifuged horizontally (1600rpm, 4 ℃, 6 min).
4. The cells were resuspended in 10ml FPBS, counted, and the total number was estimated, and then centrifuged horizontally (1600rpm, 4 ℃, 6 min).
5. Based on the total cell count estimation, an appropriate amount of FPBS was added to a concentration of 5X 106One per ml. Cells were added to 96-well plates at 50. mu.l/well. Shaking at room temperature for 10min, and standing at 37 deg.C for 30 min.
6. A corresponding number of flow tubes were prepared, labeled and 1ml of FPBS was added. And (4) lightly blowing and sucking the mixture in the 96-well plate, uniformly mixing, transferring to a corresponding flow tube, and lightly shaking and uniformly mixing. Horizontal centrifugation (1600rpm, 4 ℃, 6 min).
7. The supernatant was discarded and the flow tube was inverted onto absorbent paper and then immediately set upright on the flow tube stand. Beating the side wall of the tube frame to loosen the cells.
8. This was followed by two more washes.
9. FPBS-diluted secondary antibody was added to the flow tube at 100. mu.l/tube and the flow tube was covered with tinfoil. Shaking at room temperature for 10min, and standing at 37 deg.C for 30 min.
10. Washed three times as before.
11. Adding 200 mul FPBS, gently blowing and sucking, mixing, transferring 200 mul to 96-well plate, and detecting on machine.
The experimental results are as follows:
as shown in FIG. 3, the results indicate that the RBD-Fc protein efficiently binds to HeLa-hACE2 cells highly expressing hACE2 molecule, but not to normal HeLa. Thus, the recombinant RBD-Fc protein is confirmed to have the biological activity of binding to hACE 2.
Example 4 immunization of a novel coronavirus COVID-19 vaccine (RBD-Fc) in mice and identification of antibody Titers
ELISA identification of RBD-Fc protein immune mouse serum
After mice are immunized by 2019-nCoV RBD-m/hFc protein, the serum of the mice is subjected to antibody titer detection.
The experimental steps are as follows:
1. and (3) taking a 96-well enzyme label plate, respectively coating corresponding antigen protein, wherein the coating concentration is 1 mu g/ml, and each well is 50 mu l. The mixture was allowed to stand at 4 ℃ overnight.
2. And washing the ELISA plate once by using a plate washing machine, and patting the ELISA plate dry.
3. Add 3% BSA blocking solution 100. mu.l per well. Standing at 37 ℃ for 1 h.
4. And washing the ELISA plate once by using a plate washing machine, and patting the ELISA plate dry.
5. Another 96-well ELISA plate was used to perform serial equal-ratio dilution of mouse serum.
6. The diluted serum was added to the three microplate wells in step 1, 50. mu.l per well. Standing at 37 deg.C for 45 min.
7. The microplate was washed three times using a plate washer and patted dry.
8. Diluted goat anti-mouse antibody (dilution 1: 5000) was added at 50. mu.l per well. Standing at 37 deg.C for 30 min.
9. The microplate was washed three times using a plate washer and patted dry.
10. Color developing solution was added to each well in an amount of 50. mu.l. The color development is about 1 min.
11. Stop solution was added in 50. mu.l per well.
12. The absorbance at OD450 was read using a microplate reader.
The experimental results are as follows:
the serum ELISA results of the RBD-hFc protein immunized mice are shown in Table 1 and FIG. 4. The result shows that the recombinant RBD-hFc protein has good immunogenicity, can effectively induce and generate specific antibodies aiming at the virus Spike protein RBD, and can be used for preventing or treating the infection of the novel coronavirus COVID-19.
TABLE 1 statistics of ELISA results for RBD-hFc protein immunized mice
(401 to 405 as an aluminum adjuvant)
Sequence listing
<110> institute of microbial epidemic disease of military medical institute of military science institute of China national academy of people's liberation military
Academy of military medicine, Academy of Military Sciences, PLA
Beijing zhaoderivative Technology Co.,Ltd.
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