Detailed Description
The present invention is described in further detail below with reference to specific embodiments, which are given for the purpose of illustration only and are not intended to limit the scope of the invention.
Example 1
Screening of dominant epitope of human cytomegalovirus
1. Bioinformatics was applied to the B cell, th cell and CTL cell epitopes prediction of 5 HCMV-encoded membrane proteins. The membrane protein sequence of HCMV was derived from the protein database of the National Center for Biotechnology Information, NCBI (http:// www.ncbi.nlm.nih.gov/http:// www.ncbi.nlm.nih.gov /). Selecting five proteins of PP65, PP150, IE1, gB and gH, and respectively using DNAstar, IEDB (score > 0.5) and TMHMM software to predict B cell epitopes; predicting Th cell epitopes of HCMV membrane protein by using SYFPEITHI (score > 20), IEDB (rank < 1), netMHCII pan and NetMHCII software; the HCMV membrane protein CTL cell epitope is predicted by using IEDB, SYFPEITHI and NetMHCI software.
1.1 screening of Th epitopes
Four kinds of software SYFPEITHI, IEDB, netMHCII pan and NetMHCII are used for screening and predicting 21 membrane proteins and the set Th epitopes of virus coding proteins such as IE1, IE2, PP65, PP150 and the like, and four kinds of software are used for simultaneous prediction and selecting an overlapping result from the Th epitopes. Selecting 6 HLA alleles, including HLA-DRB1 x 01, HLA-DRB1 x 03, HLA-DRB1 x 04, HLA-DRB1 x 07, HLA-DRB1 x 01, HLA-DRB1 x 11. The screening criteria were set to SYFPEITHI scores >20, IEDB rank < -1.00, netMHC II pan rank < -10, netMHC II rank < -10. The length of the ligand was set at 15, and the other settings were defaults. 27 membrane proteins and other virus coding proteins Th epitope are screened out.
1.2 screening of epitopes for B antigens
B-cell epitope software for predicting HCMV recombinant vaccines: the software TMHMM, ABCPred, IEDB, and DNAstar were used. Given that the extramembranous protein is the precursor condition for B-cell epitopes, the TMHMM software was used to predict the non-transmembrane region of the 17 HCMV virus-encoded membrane glycoproteins as segments of the screening epitope. ABCpred as a second HCMV virus encoding B cell epitope prediction software with parameters set to: the length of the peptide segment is 16 amino acids, the threshold value is selected to be more than or equal to 0.8 min, the obtained peptide segment is used as the result predicted by the software, and the peptide segment which is not overlapped with the predicted result of other software is excluded by taking the result as the reference and integrating other software to carry out screening. Predicting by a Bepipred method in the on-line software IEDB, wherein the parameters are default parameters, comparing the obtained result with the result predicted by the ABCPred software, and reserving peptide sections with the same prediction results of the two softwares. The method comprises the steps of predicting by using a Protean module in DNAstar, selecting parameters including beta-turn and random coil in a secondary structure, hydrophilicity, flexibility, surface accessibility and antigen index, selecting peptide fragments simultaneously meeting the four parameters which are more than or equal to the four parameters, using the peptide fragments as a prediction result of software, comparing the result with the results obtained by the three kinds of software, further excluding the epitope which is not overlapped with the software, obtaining a final prediction screening epitope, and regarding the epitope as the HCMV encoding B cell dominant antigen epitope. 21 HCMV-encoded B cell dominant epitopes of the membrane protein are screened out.
2. Further screening the overlapping parts of B cell epitope, th cell epitope and CTL cell epitope of five proteins of PP65, PP150, IE1, gB and gH.
The epitope which can be simultaneously recognized by B cells, T cells and Th cells in the five proteins of PP150, PP65, IE1, gH and gB is used as the dominant epitope. The overlapping dominant antigen epitope sequence is shown in SEQ ID NO.1, SEQ ID NO.2 and SEQ ID NO. 3.
3. The overlapping parts of the B cell epitope, the Th cell epitope and the CTL cell epitope aiming at the PP65 and IE1 proteins are connected in series with the whole sequence of the PP150 protein, and the serial sequence is shown as SEQ ID NO. 4.
Example 2
Preparation of the human cytomegalovirus recombinant vector of the present invention
1. Vector construction and in vitro identification and expression of target protein
1.1. Vector construction
The maps of shuttle plasmid vectors PSE5256, PSE5257, PSE5258 and PSE5259 which are shown in FIGS. 1A-1D and sequentially contain dominant antigen epitope genes of the human cytomegalovirus protein and are shown in SEQ ID NO.1 (NO. 1), SEQ ID NO.2 (NO. 2), SEQ ID NO.3 (NO. 3) and SEQ ID NO.4 (NO. 4) are constructed.
1.1.1. Enzyme digestion
The tool vector was digested with BamHI-HF, the map of the tool vector is shown in FIG. 1E, and the 5275bp vector fragment was recovered, and the map of the digestion is shown in FIG. 2.
1.1.2. Amplification of target Gene
1.1.2.1 primer design Synthesis:
1)Primer 1(+)
CTGCAGGTCGACTCTAGAGCCACCATGGGAAGCGCCTTTAGCAG
description of the primers: SEQ ID NO.5, sequence of the gene NO.1 for PCR fishing, PCR fragment mark a
2)Primer 2(-)AGGGAGAGGGGCGGATCCTTAGGTGAACTTCTCCTCGGTC
Description of the primers: SEQ ID NO.6, sequence of the gene NO.1 for PCR fishing, PCR fragment mark a
3)Primer ID(+)GGTATAAGAGGCGCGACCAG
Description of the primers: SEQ ID NO.7, used for colony PCR to identify transformants.
4)Primer ID(-)CCTCACATTGCCAAAAGACG
Description of the primers: SEQ ID NO.8, used for colony PCR to identify transformants.
1.1.2.2PCR amplification of target Gene fragments
TABLE 1 PCR reaction System
Note: the steps 2-4 are repeated for 30 times.
1.1.2.3 agarose gel electrophoresis pattern of PCR product, as shown in FIG. 3: SEQ ID NO.1 (FIG. 3A), SEQ ID NO.2 (FIG. 3B), SEQ ID NO.3 (FIG. 3C) and SEQ ID NO.4 (FIG. 3D).
Primer 1+2: size of PCR product a: 507bp
Dl2,000dna marker: 2kb,1.5kb,1Kb,750bp,500bp,250bp,100bp
1.1.3 homologous recombination of target Gene into expression vector
The DNA fragment of interest and the linearized vector are added to a test tube in a molar ratio of 2.
TABLE 2
Reagent
|
Positive control (μ l)
|
Self-contained control (μ l)
|
Connecting group (mu l)
|
Target gene fragment after glue recovery
|
4
|
4
|
4
|
Linearized expression vector
|
1
|
1
|
1
|
Seamless cloning reaction solution
|
15
|
0
|
15
|
dd H 2 O
|
To 20
|
To 20
|
To 20 |
After mixing, incubation was carried out at 42 ℃ for 30 minutes and then transferred to ice. After standing for 2-3 minutes, 10ul of the reaction liquid was transferred to competent cells.
Description of the drawings: the positive control and the self-ligation control, the added vector and the ligation group are identical, but the gene fragment added in the positive control is the target gene (with the same homologous recombination exchange arm).
1.1.4 transformation
One competent cell (100. Mu.l per tube, stored at-80 ℃) was placed on ice, 10. Mu.l of the ligation solution was added after lysis, the contents were mixed by gentle rotation, and placed on ice for 30 minutes.
The tube was placed in a thermostatted water bath kettle pre-warmed to 42 ℃ and heat-shocked for 90 seconds.
The tubes were quickly transferred to an ice bath and the cells were allowed to cool for 2-3 minutes.
900. Mu.l of LB medium was added to each tube, and then the tubes were transferred to a 37 ℃ shaker and incubated for 1 hour to resuscitate the bacteria.
The right amount of the transformant was spread on LB agar plates (containing antibiotics corresponding to the expression vectors).
The plate was inverted and incubated at 37 ℃ for 16 hours in a constant temperature incubator.
1.1.5 Positive clone identification
Transformants grown on the plate were picked and resuspended in 10. Mu.l of LB medium, and 1. Mu.l of the medium was used as a template for colony PCR identification. The schematic diagram of colony PCR identification is shown in FIG. 4, in which linear vector represents: and (3) linearizing the carrier.
The positive clone obtains a 693bp fragment, and the negative clone obtains a 0bp fragment.
TABLE 3PCR reaction System
Note: the steps 2-5 are repeated for 30 times.
The colony PCR identification map is shown in FIGS. 5A-D: SEQ ID NO.1 (FIG. 5A), SEQ ID NO.2 (FIG. 5B), SEQ ID NO.3 (FIG. 5C) and SEQ ID NO.4 (FIG. 5D), 1 to 4 were selected 4 transformants.
Dl2,000dna marker: 2kb,1.5kb,1Kb,750bp,500bp,250bp,100bp
Positive clones were inoculated, stored and 100ul was dispensed for sequencing. The positive clone sequencing result shows that the sequence is basically consistent with the expected target gene sequence, which indicates that the vector is successfully constructed.
2. Recombinant adenovirus packaging, preparation and identification
2.1. Recombinant adenovirus packaging
The constructed vectors rd5-p1 (NO. 1), rd5-p2 (NO. 2), rd5-p3 (NO. 3) and rd5-p4 (NO. 4) AdMax adenovirus system framework plasmids pBHGlox _ E1 and 3Cre co-transfect HEK293 cells for packaging recombinant adenovirus. The process is as follows:
a) One day prior to transfection, HEK293 cells were seeded in six-well plates at 8 × 10 per well 5 Cells in a medium MEM +10% FBS, at 37 ℃ with 5% CO 2 The cells were cultured in a cell incubator overnight.
b) The day of transfection, the medium was changed and the culture was continued in fresh 10% FBS-containing MEM medium. When the cells grew to 80-90% of the basal area, the backbone plasmid (pBHGlox _ E1,3 Cre) and shuttle plasmid were taken and transfected with TurboFect transfection reagent (Thermo scientific, REF, R0531) according to the instructions attached thereto. The method comprises the following specific steps:
(1) Taking 3.2 mu g of skeleton plasmid and 0.8 mu g of shuttle plasmid from each transfection hole, and mixing uniformly; the plasmid was diluted with 400. Mu.L of Opti-MEM medium.
(2) mu.L of TurboFect transfection reagent was added to the plasmid diluted in Opti-MEM medium and mixed gently.
(3) The transfection reagent and plasmid mixture was left at room temperature for 20min and then added to the cells.
c) The day after transfection, confluent cells were passaged at 25cm 2 Culturing in a cell culture flask in MEM medium containing 5% FBS, observing every day, and transferring 75cm when the bottom of the flask is full of cells 2 In the cell culture flasks, the cells were observed daily for signs of toxicity. The appearance of the virus is that the cells become bigger and round, become grape-shaped, and begin to appear obvious plaques. The cells are detoxified when most of them are diseased and fall off from the bottom.
d) The detoxified cells were resuspended, centrifuged at 500g for 10 minutes, the supernatant was discarded, the cells were resuspended in 2mL of PBS, and then placed in a refrigerator at-70 ℃ and a water bath at 37 ℃ for three repeated freeze thawing. The supernatant containing the virus was collected by centrifugation at 12000g for 10 minutes, and the pellet was discarded.
2.2 identification of recombinant adenovirus
2.2.1 recombinant adenovirus culture
The day before transfection, cells were seeded into 10cm cell culture vessels, and the density of cells at transfection was controlled to 70-90%.
Taking out the cell culture vessel one hour before transfection, removing the original cell culture medium, adding 10ml of Opti-MEM culture medium, and returning the cells to the incubator;
preparation of complexes of transfection reagents and plasmids:
a. taking one 1.5ml Ep tube, adding a virus vector plasmid to be transfected, supplementing the virus vector plasmid to 500 mu l by using an Opti-MEM culture medium, and gently mixing the mixture;
b. taking one 1.5ml Ep tube, adding the Trans-EZ solution, supplementing the solution to 500 mu l by using an Opti-MEM culture medium, and gently mixing the solution;
c. the Trans-EZ dilution was added dropwise to the plasmid dilution, gently mixed together, and then allowed to stand at room temperature for 20 minutes to allow the DNA and Trans-EZ to bind well to form a stable transfection complex.
Taking out the cell culture plate, adding the DNA-Trans-EZ complex obtained above into a cell culture vessel, marking, and putting back into an incubator;
after 6h, absorbing the culture medium, washing with PBS once, adding 10mL of fresh growth culture medium for culture, if a large number of cells float up, not removing supernatant, adding 6mL of complete culture medium, culturing overnight at 37 ℃, and changing the culture solution the next day;
changing once every three days, generating virus plaques about 7-15 days, and waiting for purification after pathological changes.
2.2.2 recombinant adenovirus packaging identification
FIGS. 6A-E are graphs showing the packaging and identification of recombinant adenovirus of this example, wherein FIG. 6A is a graph showing the packaging and identification of rAd5-p1 (pSE 5256); FIG. 6B is a graph of packaging and identification of rAd5-p2 (pSE 5257); FIG. 6C is a graph of packaging and identification of rAd5-p3 (pSE 5258); FIG. 6D is a graph of packaging and identification of rAd5-p4 (pSE 5259); FIG. 6E is a diagram of packaging and virus identification of Ad5 (pSB 126). As can be seen from FIGS. 6A-E, when 293T cells infected with rAd5-p1, rAd5-p2, rAd5-p3 and rAd5-p4 are observed under an inverted fluorescence microscope, the green fluorescence is obvious, and the virus packaging is proved to be successful.
2.2.3 harvesting of recombinant adenovirus
After most cells have typical lesions and 50% of the cells are detached from the wall, the cells are collected, frozen and thawed repeatedly at minus 80 ℃ and 37 ℃ for 3 times, and virus supernatant is collected and stored at minus 80 ℃.
2.2.4 amplification of Virus in Small quantities
When the cultured HEK293 cells reach 80-90% confluence, removing the culture solution, and leaving a little to cover the cell surface; adding 10 μ l of the above virus solution into 10cm by using a pipette 2 Mixing in a petri dish, adding at 37 deg.C, 5% 2 An incubator; after 2h, adding 10mL of culture solution, and putting into an incubator for culture; after 4-5 days, HEK293 to be cultured becomes round, becomes detached, some cells float, and the color of the cells changes from orange to yellow, which indicates that the cells are diseased, and the cells can be collected by a pipette and stored at-70 ℃ for later use.
2.3 Mass amplification and gradient centrifugation purification of recombinant adenovirus
Preparing cells:
for a 30 × 150mm dish: when all infected cells were rounded and partially floating, the plates were scraped and the cells and supernatant were transferred to 50ml centrifuge tubes, 750g, and centrifuged for 10 min. Resuspend with 15ml of 0.1M Tris (hydroxymethyl) aminomethane-HCl (pH 8.0). Storing at-80 deg.C.
The sample was dissolved, 1.5ml of 5% sodium deoxycholate was added per 15ml of cell lysate, mixed well and incubated at room temperature for 30 minutes. The result is a relatively clear, high viscosity suspension.
150ul of magnesium chloride and 75ul of DNase I solution were added to each 15ml of cell lysate, mixed well, incubated at 37 ℃ for 30-60 minutes, and mixed well every 10 minutes. The viscosity should be reduced to be only slightly more viscous than water.
A high speed bench top centrifuge was used, 4 degrees, high speed centrifugation for 15 minutes.
Simultaneously, a cesium chloride gradient (ultrapure tubes with SW41 rotor, for 5ml of sample) was prepared: 0.5ml of a 1.5g/cc solution of cesium chloride was added to each tube, 3ml of a 1.35g/cc solution of cesium chloride was gently layered thereon, and a 3ml layer of a 1.25g/cc solution of cesium chloride was gently layered thereon. The gradient may not be disturbed after addition.
5ml of the supernatant obtained in step 4 was added to each gradient tube.
Centrifugation with SW41 rotor at 4 degrees, 35000rpm, 1 hour (acceleration and deceleration setting 1)
Viral bands were collected (should be between 1.25g/cc and 1.35 g/cc).
The resulting viral bands were transferred to sterile tubes with SW50.1 rotor, the tubes were filled with 1.35g/cc of solution), and mixed well. Centrifuge for 16-20 hours with SW50.1 rotor, 4 degree, 35000 rpm. (alternatively with SW41 rotor, 10 degrees, 35000rpm, centrifugation 16-24 hours)
The virus (usually 0.5-1 ml) is collected in as small a volume as possible and transferred to a dialysis bag for dialysis at 4 degrees, 500 volumes (or more) against 10Mm Tris-HCl, PH8.0, for at least 24 hours, with two-three solution changes between.
After dialysis, the purified virus was aliquoted into small portions-80 for storage.
The instrument comprises the following steps: beckman's SW41 rotor, SW50.1 rotor, each rotor corresponds to a sterile high-speed centrifuge tube.
Description of the solution:
1. 0.1M Tris-HCl (pH 8.0), pH 8.0:1.2g of Tris was dissolved in 80ml of deionized water. The pH is adjusted to 8.0 with hydrochloric acid, dissolved in 100ml and autoclaved.
2. 5% sodium deoxycholate: 5g sodium deoxycholate was dissolved in 100ml deionized water.
3. 2M magnesium chloride: 40.6g of anhydrous magnesium chloride are dissolved in 100ml of deionized water and filter sterilized.
4. DNase I solution: 100mg of DNase I was dissolved in 10ml of 20mM Tris-HCl, pH7.4, 50mM NaCl, 1mM dithiothreitol, 0.1mg/ml bovine serum albumin, and 50% glycerol was added. Subpackaging into small portions at-20 ℃ for storage.
5. Cesium chloride solution:
tris (hydroxymethyl) aminomethane (10 mM) was added to the specified amount of cesium chloride and dissolved with stirring, and the density was verified by weighing 1ml of each solution. Filtering, sterilizing, and storing at room temperature.
6. Dialyzate: tris (hydroxymethyl) aminomethane 10mM, pH8.0,4 ℃ was used.
2.4 titer determination of recombinant adenovirus
2.4.1 Experimental procedures
(1) HEK293 cells in good condition were selected and suspended to 5.0X 10 cells by using complete culture medium 5 Cell suspension of individual/ml, 1ml of cells were seeded into each well of 24-well plate, 37 ℃,5% CO 2 And (5) culturing.
(2) Preparing 10-fold gradient diluted virus samples [ 7 sterile Ep tubes were prepared, 990. Mu.l of complete medium was added to the first Ep tube, and 900. Mu.l of complete medium was added to each of the remaining 6 tubes; diluting virus liquid to be tested: mu.l of adenovirus stock was added to 990. Mu.l of Ep tube for 1 -2 ) (ii) a Starting from this, 100. Mu.l of the dilution was then added to 900. Mu.l of Ep tube for 1 -3 ) Until it is diluted to 10 -7 Then sequentially mix 10 -4 To 10 -7 The diluted virus solution was added to 24-well plates in 100. Mu.l per well, one well per dilution.
(3)37℃、5%CO 2 Infection was carried out for 48 hours.
(4) The medium was gently removed and 0.5ml of pre-cooled methanol was slowly added along the side wall of the 24-well plate and fixed at-20 ℃ for 20min (the tip did not touch the cells).
(5) Cells were gently washed 3 times 5min each with PBS.
(6) Add 0.2ml1% BSA for 1 h at 37 ℃.
(7) 0.2ml of primary antibody solution was added to each well and incubated at 37 ℃ for 1 hour.
(8) Cells were gently washed 3 times 5min each with PBS.
(9) 0.2ml of secondary antibody was added to each well and incubated at 37 ℃ for 1 hour.
(10) Cells were gently washed 3 times 5min each with PBS.
(11) Add 0.2ml of company's working solution to each well and incubate at room temperature for 5-10min (incubation time does not exceed 10 min).
(12) Discard the working solution, wash 2 times with PBS, and add 1ml PBS per well.
(13) The number of positive cells was counted using an optical microscope at 10 × objective lens with 5 fields randomly selected per well.
(14) The average number of positive cells per well and the virus titer were calculated.
2.4.2 results calculation
(1) The average number of positive cells in the field under the microscope was calculated. A gradient was selected with 5-50 positive cells in the field, and at least 5 regions were randomly selected for counting.
(2) The number of fields per well in the 24-well plate was calculated. For most microscopes, the diameter of the field of view observed by a standard 10 × eyepiece with a 10 × objective is 1.8mm, so the area of each field of view =3.14 × (D/2) 2 =3.14x 0.92=2.54mm 2 For a standard 24-well plate, the culture area was 2.0cm 2 Thus, the number of fields per well =2.0cm 2 /2.54mm 2 =2.0cm 2 /2.54x 10 -2 cm 2 =79, if the diameter of the field of view observed by the objective lens cannot be determined or if a 10 × objective lens is used, the diameter of the field of view can be determined using a hemocytometer.
(3) Calculating the titre
Viral titer (ifu/mL) = (mean number of positive cells in field × 79 × dilution factor)/(0.1 mL)
(3.1) pSE5256 Titer results
The average number of positive cells calculated in 5 fields under the microscope in the experiment is 5.4, and the virus in the hole is diluted by 10 8 Fold, titer =5.4 × 79 × 10 according to the above formula 8 =4.27×10 10 (ifu/ml)
(3.2) pSE5257 Titer results
The average number of positive cells in the experiment calculated in 5 visual fields under the microscope is 13, and the virus in the hole is diluted by 10 8 Fold, titer =13 × 79 × 10 according to the above formula 8 =1.03×10 11 (ifu/ml)
(3.3) pSE5258 Titer results
The average number of positive cells in the experiment calculated in 5 visual fields under the microscope is 21.1, and the virus in the hole is diluted by 10 8 Fold, titer =21.1 × 79 × 10 according to the above formula 9 =1.67×10 11 (ifu/ml)
(3.4) pSE5259 Titer results
The average number of positive cells calculated in 5 fields under the microscope in the experiment is 17.2, and the virus in the hole is diluted by 10 8 Fold, titer =17.2 × 79 × 10 according to the above formula 8 =1.36×10 11 (ifu/ml)
(3.5) pSB126 Titer results
The average number of positive cells in the experiment calculated in 5 visual fields under the microscope is 5.2, and the virus in the hole is diluted by 10 9 Fold, titer =5.2 × 79 × 10 according to the above formula 9 =4.12×10 11 (ifu/ml)
Example 3
Immunological evaluation of different constructed recombinant adenoviruses on mouse models
1. Vaccine safety assessment
1.1 mouse weight detection
After the mice were immunized, the change in body weight of the mice was monitored continuously for one week, and the body weight of the mice injected with the recombinant adenovirus did not significantly decrease compared to the negative control group, and the results are shown in FIG. 7.
1.2 mouse feeding assays
After immunizing mice, the mice were monitored for a week continuously for changes in food intake, and the food intake of the mice injected with the recombinant adenovirus did not significantly decrease compared to the negative control group, and the results are shown in fig. 8.
The weight gain percentage and the food intake monitoring of the mice can be preliminarily evaluated, and the recombinant adenovirus vaccine has no obvious toxicity to the mice and has better safety.
2. Vaccine cellular immune response detection
2.1 vaccine induces cellular immune response
With a titre of 1X 10 8 PFU recombinant adenovirus vaccine rAd5-P1. Injecting rAd5-P2, rAd5-P3 and rAd5-P4 into immunized mice, 14 days after the first immunization, taking spleens of the mice to separate lymphocytes, preparing single cell suspension, and detecting T lymphocyte immunoreaction by flow. The results are shown in FIGS. 9 and 10.
Experimental results show that the rAd5-p1, rAd5-p2, rAd5-p3 and rAd5-p4 can activate T lymphocytes and induce cytokine secretion to different degrees compared with PBS group and Ad5 vector control group.
2.2 vaccine-induced immune memory response
The titer of the solution is 1X 10 8 PFU recombinant adenovirus vaccines rAd5-P1, rAd5-P2, rAd5-P3 and rAd5-P4 are respectively injected into an immunized mouse through muscles, peripheral blood mononuclear cells and drainage lymph nodes of the mouse are taken 60 days after the first immunization, and the activation conditions of central memory T cells, effector memory T cells and tissue resident memory T cells are detected by flow. The results are shown in FIG. 11.
Experimental results show that after 60 days of first immunization, rAd5-p1, rAd5-p2, rAd5-p3 and rAd5-p4 can activate central memory T cells, effector memory T cells and tissue resident memory T cells to different degrees compared with PBS group and Ad5 vector control group.
The above description is only a preferred embodiment of the present invention and is not intended to limit the present invention, and various modifications and changes may be made by those skilled in the art. Any modification, equivalent replacement, or improvement made within the spirit and principle of the present invention should be included in the protection scope of the present invention.