CN104878095B - Nucleic acid sequence and its detection method for detecting herbicide tolerant corn plant DBN9858 - Google Patents
Nucleic acid sequence and its detection method for detecting herbicide tolerant corn plant DBN9858 Download PDFInfo
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Abstract
本发明涉及一种用于检测除草剂耐受性玉米植物DBN9858的核酸序列及其检测方法,所述玉米植物的核酸序列包括SEQ ID NO:1或其互补序列、或者SEQ ID NO:2或其互补序列。本发明转基因玉米事件DBN9858对草甘膦除草剂和草铵膦除草剂具有较好的耐受性,对产量无影响,且检测方法可以准确快速的鉴定生物样品中是否包含转基因玉米事件DBN9858的DNA分子。
The present invention relates to a nucleic acid sequence for detecting herbicide-tolerant corn plant DBN9858 and a detection method thereof, wherein the nucleic acid sequence of the corn plant comprises SEQ ID NO: 1 or its complementary sequence, or SEQ ID NO: 2 or its complementary sequence. The transgenic corn event DBN9858 of the present invention has good tolerance to glyphosate herbicides and glufosinate-ammonium herbicides, has no effect on yield, and the detection method can accurately and quickly identify whether the biological sample contains the DNA of the transgenic corn event DBN9858 molecular.
Description
技术领域technical field
本发明涉及一种用于检测除草剂耐受性玉米植物DBN9858的核酸序列及其检测方法,特别是涉及一种耐受草甘膦和草铵膦的玉米植物DBN9858和检测生物样品中是否包含特定转基因玉米事件DBN9858的DNA分子的方法。The present invention relates to a nucleic acid sequence for detecting herbicide-tolerant corn plant DBN9858 and a detection method thereof, in particular to a kind of corn plant DBN9858 tolerant to glyphosate and glufosinate and detecting whether specific Methods for DNA Molecules of Transgenic Maize Event DBN9858.
背景技术Background technique
N-膦酰甲基甘氨酸,也称为草甘膦,是一种内吸传导型慢性广谱灭生性除草剂。草甘膦是5-烯醇丙酮酰莽草酸-3-磷酸合酶(EPSPS)的合成底物磷酸烯醇式丙酮酸(PEP)的竞争性抑制剂,可抑制PEP和3-磷酸莽草酸这两种底物在EPSPS催化下向5-烯醇丙酮酰莽草酸-3-磷酸莽草酸的转化,从而阻断芳香族氨基酸合成前体-莽草酸的合成途径,使蛋白质的合成受到干扰导致植物和细菌死亡。N-phosphonomethylglycine, also known as glyphosate, is a systemic, chronic broad-spectrum herbicide. Glyphosate is a competitive inhibitor of phosphoenolpyruvate (PEP), the synthetic substrate of 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS), and can inhibit the synthesis of PEP and 3-phosphoshikimate. The conversion of the two substrates to 5-enolpyruvylshikimic acid-3-phosphoshikimic acid under the catalysis of EPSPS blocks the synthetic pathway of shikimic acid, the precursor of aromatic amino acid synthesis, and interferes with the synthesis of proteins leading to plant and bacteria die.
草甘膦耐受性可以通过表达修饰的EPSPS来实现。修饰的EPSPS对草甘膦具有更低的亲和性,因而在草甘膦存在的情况下,EPSPS保持了它们的催化活性,即获得了草甘膦耐受性。Glyphosate tolerance can be achieved by expressing modified EPSPS. The modified EPSPSs have lower affinity to glyphosate, so EPSPSs maintain their catalytic activity in the presence of glyphosate, that is, glyphosate tolerance is obtained.
玉米(Zea mays L.)在世界上很多地区都是主要的粮食作物。在玉米生产中除草剂耐受性是一项重要的农艺性状,特别是对草甘膦除草剂的耐受性。玉米对草甘膦除草剂的耐受性可以通过转基因的方法使草甘膦除草剂耐受型基因(EPSPS,CP4)在玉米植物中表达而获得,例如玉米事件NK603、玉米事件MON88017等。Maize (Zea mays L.) is a major food crop in many parts of the world. Herbicide tolerance is an important agronomic trait in maize production, especially tolerance to glyphosate herbicide. The tolerance of maize to glyphosate herbicides can be obtained by expressing glyphosate herbicide tolerance genes (EPSPS, CP4) in maize plants by transgenic methods, such as maize event NK603, maize event MON88017 and the like.
草甘膦耐受性耕种系统的普遍采用和草甘膦使用的日益增加已经导致近年来草甘膦抗性杂草的流行。在种植者面对草甘膦抗性杂草或向更难以控制的杂草物种转变的地区,种植者可以通过与能够控制遗漏杂草的其他除草剂混合或交替使用来补偿草甘膦的弱点。The widespread adoption of glyphosate-tolerant farming systems and the increasing use of glyphosate have led to the prevalence of glyphosate-resistant weeds in recent years. In areas where growers are faced with glyphosate-resistant weeds or are transitioning to more difficult-to-control weed species, growers can compensate for glyphosate's weakness by mixing or alternating applications with other herbicides capable of controlling missed weeds .
草铵膦是膦丝菌素类除草剂中的一种非系统性、非选择性除草剂。主要用于一年生或多年生阔叶杂草的出土后控制,是通过L-膦丝菌素(草铵膦中的活性成分)对谷氨酰胺合酶(一种对于植物中的氨解毒必需的酶)的不可逆抑制来控制杂草的。与草甘膦杀根不同,草铵膦先杀叶,通过植物蒸腾作用可以在植物木质部进行传导,其速效性间于百草枯和草甘膦之间。Glufosinate-ammonium is a non-systemic and non-selective herbicide among the phosphinothricin herbicides. It is mainly used for the post-emergence control of annual or perennial broadleaf weeds by L-phosphinothricin (the active ingredient in glufosinate-ammonium) on glutamine synthase (an enzyme necessary for the detoxification of ammonia in plants) ) to control weeds by irreversible inhibition. Unlike glyphosate that kills roots, glufosinate kills leaves first, and can conduct transpiration in plant xylem through plant transpiration, and its quick-acting effect is between paraquat and glyphosate.
从链霉菌分离的酶膦丝菌素N-乙酰基转移酶(PAT)通过乙酰化催化L-膦丝菌素转化为其无活性形式。表达PAT的植物优化形式的基因已经在大豆中使 用以赋予大豆对草铵膦除草剂的耐受性,例如大豆事件A5547-127。因此与草铵膦耐受性性状组合使用草铵膦除草剂可以作为一种有效管理草甘膦抗性杂草的非选择性手段。The enzyme phosphinothricin N-acetyltransferase (PAT) isolated from Streptomyces catalyzes the conversion of L-phosphinothricin to its inactive form by acetylation. Genes expressing plant-optimized versions of PAT have been used in soybeans to confer tolerance to soybeans to glufosinate-ammonium herbicides, such as soybean event A5547-127. Therefore, the use of glufosinate-ammonium herbicides in combination with glufosinate-ammonium tolerance traits can be an effective non-selective means of managing glyphosate-resistant weeds.
同时,随着转基因抗虫玉米大面积种植,少量存活下来的昆虫/害虫经过几代繁殖后,可能产生抗性。抗除草剂转基因玉米作为非抗虫转基因玉米,与转基因抗虫玉米以一定比例一并种植,可以延缓昆虫/害虫产生抗药性。At the same time, with the large-scale planting of transgenic insect-resistant corn, a small number of surviving insects/pests may develop resistance after several generations of reproduction. Herbicide-resistant transgenic corn, as non-insect-resistant transgenic corn, is planted together with transgenic insect-resistant corn in a certain proportion, which can delay insects/pests from developing resistance.
已知外源基因在植物体内的表达受到它们的染色体位置的影响,可能是由于染色质结构(如异染色质)或转录调节元件(如增强子)接近整合位点。为此,通常需要筛选大量的事件才有可能鉴定出可以商业化的事件(即导入的目标基因得到最优表达的事件)。例如,在植物和其他生物体中已经观察到导入基因的表达量在事件间可能有很大差异;在表达的空间或时间模式上可能也存在差异,如在不同植物组织之间转基因的相对表达存在差异,这种差异表现在实际的表达模式可能与根据导入的基因构建体中的转录调节元件所预期的表达模式不一致。因此,通常需要产生成百上千个不同的事件并从这些事件中筛选出具有以商业化为目的所预期的转基因表达量和表达模式的单一事件。具有预期的转基因表达量和表达模式的事件可用于采用常规育种方法通过有性异型杂交将转基因渗入到其他遗传背景中。通过这种杂交方式产生的后代保持了原始转化体的转基因表达特征。应用这种策略模式可以确保在许多品种中具有可靠的基因表达,而这些品种能很好的适应当地的生长条件。The expression of exogenous genes in plants is known to be influenced by their chromosomal location, possibly due to the proximity of chromatin structure (such as heterochromatin) or transcriptional regulatory elements (such as enhancers) to the integration site. For this reason, it is usually necessary to screen a large number of events before it is possible to identify commercially viable events (ie, events in which the introduced target gene is optimally expressed). For example, it has been observed in plants and other organisms that the amount of expression of an introduced gene can vary considerably between events; there may also be differences in the spatial or temporal pattern of expression, such as the relative expression of the transgene between different plant tissues There are differences in which the actual expression pattern may not correspond to that expected based on the transcriptional regulatory elements in the introduced gene construct. Therefore, it is often necessary to generate hundreds to thousands of different events and to screen these events for a single event with the expected amount and pattern of transgene expression for commercialization purposes. Events with the expected amount and pattern of transgene expression can be used to introgress the transgene into other genetic backgrounds by sexual outcrossing using conventional breeding methods. The progeny produced by this crossing method maintained the transgene expression characteristics of the original transformant. Applying this pattern of strategies can ensure reliable gene expression in many varieties that are well adapted to local growing conditions.
能够检测特定事件的存在以确定有性杂交的后代是否包含目的基因将是有益的。此外,检测特定事件的方法还将有助于遵守相关法规,例如来源于重组农作物的食物在投入市场前需要获得正式批准和进行标记。通过任何熟知的多核苷酸检测方法来检测转基因的存在都是可能的,例如聚合酶链式反应(PCR)或利用多核苷酸探针的DNA杂交。这些检测方法通常集中于常用的遗传元件,例如启动子、终止子、标记基因等。因此,除非与插入的转基因DNA相邻的染色体DNA(“侧翼DNA”)的序列是己知的,上述这种方法就不能够用于区别不同的事件,特别是那些用相同的DNA构建体产生的事件。所以,目前常利用跨越了插入的转基因和侧翼DNA的接合部位的一对引物通过PCR来鉴定转基因特定事件,具体地说是包含侧翼序列的第一引物和包含插入序列的第二引物。It would be beneficial to be able to detect the presence of a particular event to determine whether the progeny of a sexual cross contain the gene of interest. In addition, methods to detect specific events would help to comply with regulations, such as the need for formal approval and labeling of food derived from recombinant crops before being placed on the market. Detection of the presence of the transgene is possible by any of the well-known polynucleotide detection methods, such as polymerase chain reaction (PCR) or DNA hybridization using polynucleotide probes. These assays usually focus on commonly used genetic elements such as promoters, terminators, marker genes, etc. Therefore, unless the sequence of the chromosomal DNA adjacent to the inserted transgenic DNA ("flanking DNA") is known, this approach cannot be used to distinguish between different events, especially those produced with the same DNA construct. event. Therefore, transgene-specific events are now commonly identified by PCR using a pair of primers spanning the junction of the inserted transgene and flanking DNA, specifically a first primer containing the flanking sequence and a second primer containing the inserted sequence.
发明内容Contents of the invention
本发明的目的是提供一种用于检测除草剂耐受性玉米植物DBN9858的核酸序列及其检测方法,转基因玉米事件DBN9858对草甘膦除草剂和草铵膦除草剂具有较好的耐受性,且检测方法可以准确快速的鉴定生物样品中是否包含特定转基因玉米事件DBN9858的DNA分子。The object of the present invention is to provide a nucleic acid sequence and detection method for detecting herbicide-tolerant corn plant DBN9858, and the transgenic corn event DBN9858 has better tolerance to glyphosate herbicide and glufosinate-ammonium herbicide , and the detection method can accurately and quickly identify whether the biological sample contains the DNA molecule of the specific transgenic maize event DBN9858.
为实现上述目的,本发明提供了一种核酸序列,包括SEQ ID NO:3或其互补序列中至少11个连续的核苷酸、和/或SEQ ID NO:4或其互补序列中至少11个连续的核苷酸。To achieve the above object, the present invention provides a nucleic acid sequence, comprising at least 11 consecutive nucleotides in SEQ ID NO:3 or its complementary sequence, and/or at least 11 consecutive nucleotides in SEQ ID NO:4 or its complementary sequence consecutive nucleotides.
优选地,所述核酸序列包括SEQ ID NO:1或其互补序列、和/或SEQ ID NO:2或其互补序列。Preferably, the nucleic acid sequence comprises SEQ ID NO: 1 or its complement, and/or SEQ ID NO: 2 or its complement.
进一步地,所述核酸序列包括SEQ ID NO:3或其互补序列、和/或SEQ ID NO:4或其互补序列。Further, the nucleic acid sequence includes SEQ ID NO: 3 or its complementary sequence, and/or SEQ ID NO: 4 or its complementary sequence.
更进一步地,所述核酸序列包括SEQ ID NO:5或其互补序列。Furthermore, the nucleic acid sequence includes SEQ ID NO: 5 or its complementary sequence.
所述SEQ ID NO:1或其互补序列为转基因玉米事件DBN9858中在插入序列的5’末端位于插入接合部位附近的一个长度为22个核苷酸的序列,所述SEQ ID NO:1或其互补序列跨越了玉米插入位点的侧翼基因组DNA序列和插入序列的5’末端的DNA序列,包含所述SEQ ID NO:1或其互补序列即可鉴定为转基因玉米事件DBN9858的存在。所述SEQ ID NO:2或其互补序列为转基因玉米事件DBN9858中在插入序列的3’末端位于插入接合部位附近的一个长度为22个核苷酸的序列,所述SEQ ID NO:2或其互补序列跨越了插入序列的3’末端的DNA序列和玉米插入位点的侧翼基因组DNA序列,包含所述SEQ ID NO:2或其互补序列即可鉴定为转基因玉米事件DBN9858的存在。The SEQ ID NO: 1 or its complementary sequence is a sequence of 22 nucleotides in length near the insertion junction at the 5' end of the insertion sequence in the transgenic maize event DBN9858, the SEQ ID NO: 1 or its The complementary sequence spans the flanking genomic DNA sequence of the maize insertion site and the DNA sequence at the 5' end of the insertion sequence, and the presence of the transgenic maize event DBN9858 can be identified by including said SEQ ID NO: 1 or its complementary sequence. Said SEQ ID NO: 2 or its complementary sequence is a sequence of 22 nucleotides in length near the insertion junction at the 3' end of the inserted sequence in the transgenic maize event DBN9858, said SEQ ID NO: 2 or its complementary sequence Complementary sequences spanning the DNA sequence at the 3' end of the insertion sequence and the flanking genomic DNA sequence of the maize insertion site, comprising said SEQ ID NO: 2 or its complement can be identified as the presence of transgenic maize event DBN9858.
本发明中,所述核酸序列可以为所述SEQ ID NO:3或其互补序列中转基因插入序列的任何部分的至少11个或更多个连续多核苷酸(第一核酸序列),或者为所述SEQ ID NO:3或其互补序列中5’侧翼玉米基因组DNA区域的任何部分的至少11个或更多个连续多核苷酸(第二核酸序列)。所述核酸序列进一步可以为同源于或互补于包含完整的所述SEQ IDNO:1的所述SEQ ID NO:3的一部分。当第一核酸序列和第二核酸序列一起使用时,这些核酸序列在产生扩增产物的DNA扩增方法中包括DNA引物组。使用DNA引物对在DNA扩增方法中产生的扩增产物是包括SEQ ID NO:1的扩增产物时,可以诊断转基因玉米事件DBN9858或其后代的存在。本领域技术人员熟知的,第一和第二核酸序列不必仅仅由DNA组成,也可包括RNA、DNA和RNA的混合物,或者DNA、RNA或其他不作为一种或多种聚合酶模板的核苷酸或其类似物的组合。此外,本发明中所述探针或引物应该是至少大约11、12、13、14、15、16、17、18、19、20、21或22个连续核苷酸的长度,其可以选自SEQ ID NO:1、SEQ ID NO:2、SEQ IDNO:3、SEQ ID NO:4和SEQ ID NO:5中所述的核苷酸。当选自SEQ ID NO:3、SEQ ID NO:4和SEQ ID NO:5所示的核苷酸时,所述探针和引物可以为长度是至少大约21个到大约50个或更多的连续核苷酸。所述SEQ ID NO:3或其互补序列为转基因玉米事件DBN9858中在插入序列的5’末端位于插入接合部位附近的一个长度为1301个核苷酸的序列,所述SEQ ID NO:3或其互补序列由1067个核苷酸的玉米侧翼基因组DNA序列(SEQ ID NO:3的核苷酸1-1067)、89个核苷酸的DBN10006构建体 DNA序列(SEQ ID NO:3的核苷酸1068-1156)和145个核苷酸的pr35S启动子序列的5’末端DNA序列(SEQ ID NO:3的核苷酸1157-1301)组成,包含所述SEQ ID NO:3或其互补序列即可鉴定为转基因玉米事件DBN9858的存在。In the present invention, the nucleic acid sequence may be at least 11 or more contiguous polynucleotides (first nucleic acid sequence) of any part of the transgene insertion sequence in the SEQ ID NO: 3 or its complementary sequence, or the At least 11 or more contiguous polynucleotides (second nucleic acid sequences) of any part of the 5' flanking maize genomic DNA region in said SEQ ID NO: 3 or its complementary sequence. Said nucleic acid sequence may further be homologous or complementary to a portion of said SEQ ID NO:3 comprising the entirety of said SEQ ID NO:1. When a first nucleic acid sequence and a second nucleic acid sequence are used together, these nucleic acid sequences comprise a set of DNA primers in a DNA amplification method that produces an amplification product. The presence of transgenic maize event DBN9858 or progeny thereof can be diagnosed when the amplification product generated in the DNA amplification method using the DNA primer pair is an amplification product comprising SEQ ID NO:1. As is well known to those skilled in the art, the first and second nucleic acid sequences need not consist solely of DNA, but may also include RNA, a mixture of DNA and RNA, or DNA, RNA or other nucleosides that do not serve as templates for one or more polymerases Combinations of acids or their analogs. In addition, the probes or primers of the present invention should be at least about 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 or 22 consecutive nucleotides in length, which can be selected from Nucleotides described in SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4 and SEQ ID NO:5. When selected from the nucleotides shown in SEQ ID NO:3, SEQ ID NO:4, and SEQ ID NO:5, the probes and primers may be at least about 21 to about 50 or more contiguous Nucleotides. Said SEQ ID NO: 3 or its complementary sequence is a sequence of 1301 nucleotides in length near the insertion junction at the 5' end of the inserted sequence in the transgenic maize event DBN9858, said SEQ ID NO: 3 or its complementary sequence Complementary sequence consists of the corn flank genomic DNA sequence (nucleotide 1-1067 of SEQ ID NO:3) of 1067 nucleotides, the DBN10006 construct DNA sequence of 89 nucleotides (nucleotide of 3 1068-1156) and the 5' end DNA sequence (nucleotide 1157-1301 of SEQ ID NO:3) of the pr35S promoter sequence of 145 nucleotides, comprising said SEQ ID NO:3 or its complementary sequence namely The presence of transgenic maize event DBN9858 can be identified.
所述核酸序列可以为所述SEQ ID NO:4或其互补序列中转基因插入序列的任何部分的至少11个或更多个连续多核苷酸(第三核酸序列),或者为所述SEQ ID NO:4或其互补序列中3’侧翼玉米基因组DNA区域的任何部分的至少11个或更多个连续多核苷酸(第四核酸序列)。所述核酸序列进一步可以为同源于或互补于包含完整的所述SEQ ID NO:2的所述SEQ ID NO:4的一部分。当第三核酸序列和第四核酸序列一起使用时,这些核酸序列在产生扩增产物的DNA扩增方法中包括DNA引物组。使用DNA引物对在DNA扩增方法中产生的扩增产物是包括SEQ ID NO:2的扩增产物时,可以诊断转基因玉米事件DBN9858或其后代的存在。所述SEQ ID NO:4或其互补序列为转基因玉米事件DBN9858中在插入序列的3’末端位于插入接合部位附近的一个长度为1310个核苷酸的序列,所述SEQ ID NO:4或其互补序列由164个核苷酸的tNos终止子序列(SEQ ID NO:4的核苷酸1-164)、84个核苷酸的DBN10006构建体DNA序列(SEQ ID NO:4的核苷酸165-248)和1062个核苷酸的玉米整合位点侧翼基因组DNA序列(SEQ ID NO:4的249-1310)组成,包含所述SEQ ID NO:4或其互补序列即可鉴定为转基因玉米事件DBN9858的存在。The nucleic acid sequence can be at least 11 or more continuous polynucleotides (the third nucleic acid sequence) of any part of the transgene insertion sequence in the SEQ ID NO: 4 or its complementary sequence, or the SEQ ID NO At least 11 or more continuous polynucleotides (the fourth nucleic acid sequence) of any part of the 3' flanking maize genomic DNA region in 4 or its complementary sequence. Said nucleic acid sequence may further be homologous or complementary to a portion of said SEQ ID NO:4 comprising the entirety of said SEQ ID NO:2. When a third nucleic acid sequence and a fourth nucleic acid sequence are used together, these nucleic acid sequences comprise a set of DNA primers in a DNA amplification method that produces an amplified product. The presence of transgenic maize event DBN9858 or progeny thereof can be diagnosed when the amplification product generated in the DNA amplification method using the DNA primer pair is an amplification product comprising SEQ ID NO:2. Said SEQ ID NO: 4 or its complementary sequence is a sequence of 1310 nucleotides in length near the insertion junction at the 3' end of the inserted sequence in the transgenic maize event DBN9858, said SEQ ID NO: 4 or its complementary sequence Complementary sequence consists of the tNos terminator sequence (nucleotide 1-164 of SEQ ID NO:4) of 164 nucleotides, the DBN10006 construct DNA sequence (nucleotide 165 of SEQ ID NO:4) of 84 nucleotides -248) and 1062 nucleotides of maize integration site flanking genomic DNA sequence (249-1310 of SEQ ID NO:4), comprising said SEQ ID NO:4 or its complementary sequence can be identified as a transgenic maize event The presence of DBN9858.
所述SEQ ID NO:5或其互补序列为表征转基因玉米事件DBN9858的长度为6890个核苷酸的序列,其具体包含的基因组和遗传元件如表1所示。包含所述SEQ ID NO:5或其互补序列即可鉴定为转基因玉米事件DBN9858的存在。The SEQ ID NO:5 or its complementary sequence is a sequence of 6890 nucleotides in length characterizing the transgenic maize event DBN9858, and its specific genome and genetic elements are shown in Table 1. The presence of the transgenic maize event DBN9858 can be identified by the inclusion of said SEQ ID NO: 5 or its complementary sequence.
表1、SEQ ID NO:5包含的基因组及遗传元件Table 1, the genome and genetic elements contained in SEQ ID NO:5
所述核酸序列或其互补序列可用于DNA扩增法中以产生扩增子,所述扩增子的检测诊断生物样品中转基因玉米事件DBN9858或其后代的存在;所述核酸序列或其互补序列可用于核苷酸检测法中,以检测生物样品中转基因玉米事件DBN9858或其后代的存在。The nucleic acid sequence or its complement can be used in DNA amplification methods to produce amplicons, the detection of which is diagnostic of the presence of transgenic maize event DBN9858 or its progeny in a biological sample; the nucleic acid sequence or its complement Can be used in nucleotide assays to detect the presence of transgenic maize event DBN9858 or its progeny in biological samples.
为实现上述目的,本发明还提供了一种检测样品中转基因玉米事件DBN9858的DNA存在的方法,包括:To achieve the above object, the present invention also provides a method for detecting the presence of DNA of the transgenic corn event DBN9858 in a sample, comprising:
使待检测样品与至少两种引物在核酸扩增反应中接触;contacting the sample to be tested with at least two primers in a nucleic acid amplification reaction;
进行核酸扩增反应;Perform nucleic acid amplification reactions;
检测扩增产物的存在;detecting the presence of the amplification product;
所述扩增产物包括SEQ ID NO:3或其互补序列中至少11个连续的核苷酸、或者SEQID NO:4或其互补序列中至少11个连续的核苷酸。The amplification product includes at least 11 consecutive nucleotides in SEQ ID NO: 3 or its complementary sequence, or at least 11 consecutive nucleotides in SEQ ID NO: 4 or its complementary sequence.
进一步地,所述扩增产物包括SEQ ID NO:1或其互补序列中第1-11位或第12-22位连续核苷酸、或者SEQ ID NO:2或其互补序列中第1-11位或第12-22位连续核苷酸。Further, the amplified product includes consecutive nucleotides at positions 1-11 or 12-22 in SEQ ID NO: 1 or its complementary sequence, or 1-11 in SEQ ID NO: 2 or its complementary sequence or the 12th-22nd consecutive nucleotides.
更进一步地,所述扩增产物包括SEQ ID NO:1或其互补序列、SEQ ID NO:2或其互补序列、SEQ ID NO:6或其互补序列、或者SEQ ID NO:7或其互补序列。Further, the amplified product comprises SEQ ID NO:1 or its complementary sequence, SEQ ID NO:2 or its complementary sequence, SEQ ID NO:6 or its complementary sequence, or SEQ ID NO:7 or its complementary sequence .
在上述技术方案中,所述引物包括至少一种所述核酸序列。In the above technical solution, the primer includes at least one nucleic acid sequence.
具体地,所述引物包括第一引物和第二引物,所述第一引物选自SEQ ID NO:8和SEQ ID NO:10;所述第二引物选自SEQ ID NO:9和SEQ ID NO:11。Specifically, the primers include a first primer and a second primer, the first primer is selected from SEQ ID NO:8 and SEQ ID NO:10; the second primer is selected from SEQ ID NO:9 and SEQ ID NO :11.
为实现上述目的,本发明还提供了一种检测样品中转基因玉米事件DBN9858的DNA存在的方法,包括:To achieve the above object, the present invention also provides a method for detecting the presence of DNA of the transgenic corn event DBN9858 in a sample, comprising:
使待检测样品与探针接触,所述探针包括SEQ ID NO:3或其互补序列中至少11个连续的核苷酸、或者SEQ ID NO:4或其互补序列中至少11个连续的核苷酸;Contacting the sample to be detected with a probe comprising at least 11 consecutive nucleotides of SEQ ID NO: 3 or its complement, or at least 11 consecutive cores of SEQ ID NO: 4 or its complement nucleotide;
使所述待检测样品和所述探针在严格杂交条件下杂交;hybridize the sample to be detected and the probe under stringent hybridization conditions;
检测所述待检测样品和所述探针的杂交情况。Detecting the hybridization between the sample to be detected and the probe.
所述严格条件可为在6×SSC(柠檬酸钠)、0.5%SDS(十二烷基硫酸钠)溶液中,在65℃下杂交,然后用2×SSC、0.1%SDS和1×SSC、0.1%SDS各洗膜1次。The stringent conditions can be hybridized at 65° C. in 6×SSC (sodium citrate), 0.5% SDS (sodium dodecyl sulfate) solution, and then mixed with 2×SSC, 0.1% SDS and 1×SSC, Wash each membrane once with 0.1% SDS.
进一步地,所述探针包括SEQ ID NO:1或其互补序列中第1-11位或第12-22位连续核苷酸、或者SEQ ID NO:2或其互补序列中第1-11位或第12-22位连续核苷酸。Further, the probe includes consecutive nucleotides at positions 1-11 or 12-22 in SEQ ID NO: 1 or its complementary sequence, or at positions 1-11 in SEQ ID NO: 2 or its complementary sequence Or the 12th-22nd consecutive nucleotides.
更进一步地,所述探针具有SEQ ID NO:1或其互补序列、SEQ ID NO:2或其互补序列、SEQ ID NO:6或其互补序列、或者SEQ ID NO:7或其互补序列。Furthermore, the probe has SEQ ID NO: 1 or its complementary sequence, SEQ ID NO: 2 or its complementary sequence, SEQ ID NO: 6 or its complementary sequence, or SEQ ID NO: 7 or its complementary sequence.
为实现上述目的,本发明还提供了一种检测样品中转基因玉米事件DBN9858的DNA存在的方法,包括:To achieve the above object, the present invention also provides a method for detecting the presence of DNA of the transgenic corn event DBN9858 in a sample, comprising:
使待检测样品与标记物核酸分子接触,所述标记物核酸分子包括SEQ ID NO:3或其互补序列中至少11个连续的核苷酸、或者SEQ ID NO:4或其互补序列中至少11个连续的核苷酸;Contacting the sample to be detected with a marker nucleic acid molecule comprising at least 11 consecutive nucleotides of SEQ ID NO: 3 or its complement, or at least 11 of SEQ ID NO: 4 or its complement consecutive nucleotides;
使所述待检测样品和所述标记物核酸分子在严格杂交条件下杂交;Hybridizing the sample to be detected and the marker nucleic acid molecule under stringent hybridization conditions;
检测所述待检测样品和所述标记物核酸分子的杂交情况,进而通过标记物辅助育种分析以确定草甘膦耐受性和/或草铵膦耐受性与标记物核酸分子在遗传学上是连锁的。Detecting the hybridization between the sample to be detected and the marker nucleic acid molecule, and then analyzing the marker-assisted breeding to determine the genetic relationship between glyphosate tolerance and/or glufosinate tolerance and the marker nucleic acid molecule are chained.
进一步地,所述标记物核酸分子包括SEQ ID NO:1或其互补序列中第1-11位或第12-22位连续核苷酸、或者SEQ ID NO:2或其互补序列中第1-11位或第12-22位连续核苷酸。Further, the marker nucleic acid molecule includes the 1-11 or 12-22 consecutive nucleotides in SEQ ID NO: 1 or its complementary sequence, or the 1-1 in SEQ ID NO: 2 or its complementary sequence. The 11th or 12th-22nd consecutive nucleotides.
更进一步地,所述标记物核酸分子具有SEQ ID NO:1或其互补序列、SEQ ID NO:2或其互补序列、SEQ ID NO:6或其互补序列、或者SEQ ID NO:7或其互补序列。Further, the marker nucleic acid molecule has SEQ ID NO: 1 or its complementary sequence, SEQ ID NO: 2 or its complementary sequence, SEQ ID NO: 6 or its complementary sequence, or SEQ ID NO: 7 or its complementary sequence sequence.
可选择地,至少一个所述探针用至少一种荧光基团标记。Optionally, at least one of said probes is labeled with at least one fluorophore.
为实现上述目的,本发明还提供了一种DNA检测试剂盒,包括至少一个DNA分子,所述DNA分子包括SEQ ID NO:3的同源序列或其互补序列中至少11个连续的核苷酸、或者SEQID NO:4的同源序列或其互补序列中至少11个连续的核苷酸,其可以作为对于转基因玉米事件DBN9858或其后代具有特异性的DNA引物或探针。To achieve the above object, the present invention also provides a DNA detection kit, comprising at least one DNA molecule, said DNA molecule comprising at least 11 consecutive nucleotides in the homologous sequence of SEQ ID NO:3 or its complementary sequence , or at least 11 consecutive nucleotides in the homologous sequence of SEQ ID NO: 4 or its complementary sequence, which can be used as a DNA primer or probe specific for the transgenic maize event DBN9858 or its progeny.
进一步地,所述DNA分子包括SEQ ID NO:1或其互补序列中第1-11位或第12-22位连续核苷酸、或者SEQ ID NO:2或其互补序列中第1-11位或第12-22位连续核苷酸。Further, the DNA molecule includes consecutive nucleotides at positions 1-11 or 12-22 in SEQ ID NO: 1 or its complementary sequence, or at positions 1-11 in SEQ ID NO: 2 or its complementary sequence Or the 12th-22nd consecutive nucleotides.
更进一步地,所述DNA分子具有SEQ ID NO:1的同源序列或其互补序列、SEQ IDNO:2的同源序列或其互补序列、SEQ ID NO:6的同源序列或其互补序列、或者SEQ ID NO:7的同源序列或其互补序列。Further, the DNA molecule has a homologous sequence of SEQ ID NO:1 or its complement, a homologous sequence of SEQ ID NO:2 or its complement, a homologous sequence of SEQ ID NO:6 or its complement, Or a homologous sequence of SEQ ID NO: 7 or its complement.
为实现上述目的,本发明还提供了一种植物细胞,包含编码草甘膦耐受性EPSPS蛋白的核酸序列、编码草铵膦耐受性PAT蛋白的核酸序列和特定区域的核酸序列,所述特定区域的核酸序列包括SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:6或SEQ ID NO:7所示的序列。To achieve the above object, the present invention also provides a plant cell, comprising a nucleic acid sequence encoding a glyphosate-tolerant EPSPS protein, a nucleic acid sequence encoding a glufosinate-ammonium-tolerant PAT protein, and a nucleic acid sequence in a specific region, said The nucleic acid sequence of the specific region includes the sequence shown in SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:6 or SEQ ID NO:7.
为实现上述目的,本发明还提供了一种产生对草甘膦除草剂具有耐受性的玉米植株的方法,包括向所述玉米植株的基因组中引入编码草甘膦耐受性EPSPS蛋白的核酸序列和特定区域的核酸序列,所述特定区域的核酸序列选自SEQ ID NO:1、SEQ ID NO:2、SEQ IDNO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列。To achieve the above object, the present invention also provides a method for producing a corn plant tolerant to glyphosate herbicides, comprising introducing a nucleic acid encoding a glyphosate-tolerant EPSPS protein into the genome of the corn plant Sequence and the nucleic acid sequence of specific region, the nucleic acid sequence of described specific region is selected from SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO: 6 and at least one nucleic acid sequence in the sequence shown in SEQ ID NO:7.
具体地,所述产生对草甘膦除草剂具有耐受性的玉米植株的方法包括:Specifically, the method for producing a corn plant tolerant to glyphosate herbicides comprises:
将对草甘膦除草剂具有耐受性的转基因玉米事件DBN9858第一亲本玉米 植株与缺少草甘膦耐受性的第二亲本玉米植株有性杂交,从而产生大量子代植株;sexually crossing a transgenic corn event DBN9858 first parent corn plant tolerant to glyphosate herbicides with a second parent corn plant lacking glyphosate tolerance to produce a large number of progeny plants;
用草甘膦除草剂处理所述子代植株;Treating the progeny plants with glyphosate herbicide;
选择耐受草甘膦的所述子代植株。The progeny plants are selected for tolerance to glyphosate.
为实现上述目的,本发明还提供了一种产生对草铵膦除草剂具有耐受性的玉米植株的方法,包括向所述玉米植株的基因组中引入编码草铵膦耐受性PAT蛋白的核酸序列和特定区域的核酸序列,所述特定区域的核酸序列选自SEQ ID NO:1、SEQ ID NO:2、SEQ IDNO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列。To achieve the above object, the present invention also provides a method for producing a corn plant tolerant to glufosinate-ammonium herbicides, comprising introducing a nucleic acid encoding a glufosinate-ammonium-tolerant PAT protein into the genome of the corn plant Sequence and the nucleic acid sequence of specific region, the nucleic acid sequence of described specific region is selected from SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO: 6 and at least one nucleic acid sequence in the sequence shown in SEQ ID NO:7.
具体地,所述产生对草铵膦除草剂具有耐受性的玉米植株的方法包括:Specifically, the method for producing corn plants tolerant to glufosinate-ammonium herbicides comprises:
将对草铵膦除草剂具有耐受性的转基因玉米事件DBN9858第一亲本玉米植株与缺少草铵膦耐受性的第二亲本玉米植株有性杂交,从而产生大量子代植株;sexually crossing a first parent corn plant of transgenic corn Event DBN9858 tolerant to glufosinate-ammonium herbicide with a second parent corn plant lacking glufosinate-ammonium tolerance to produce a large number of progeny plants;
用草铵膦除草剂处理所述子代植株;Treat the progeny plants with glufosinate-ammonium herbicide;
选择耐受草甘膦的所述子代植株。The progeny plants are selected for tolerance to glyphosate.
为实现上述目的,本发明还提供了一种产生对草甘膦除草剂和草铵膦除草剂具有耐受性的玉米植株的方法,包括向所述玉米植株的基因组中引入编码草甘膦耐受性EPSPS蛋白的核酸序列、编码草铵膦耐受性PAT蛋白的核酸序列和特定区域的核酸序列,所述特定区域的核酸序列选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列。To achieve the above object, the present invention also provides a method for producing a corn plant tolerant to glyphosate herbicides and glufosinate-ammonium herbicides, comprising introducing a glyphosate-resistant gene into the genome of the corn plant The nucleotide sequence of the tolerant EPSPS protein, the nucleotide sequence of the coding glufosinate-ammonium tolerant PAT protein and the nucleotide sequence of the specific region, the nucleotide sequence of the specific region is selected from SEQ ID NO:1, SEQ ID NO:2, SEQ ID At least one nucleic acid sequence in the sequences shown in NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6 and SEQ ID NO:7.
具体地,所述产生对草甘膦除草剂和草铵膦除草剂具有耐受性的玉米植株的方法包括:Specifically, the method for producing corn plants tolerant to glyphosate herbicides and glufosinate-ammonium herbicides includes:
将对草甘膦除草剂和草铵膦除草剂具有耐受性的转基因玉米事件DBN9858第一亲本玉米植株与缺少草甘膦和/或草铵膦耐受性的第二亲本玉米植株有性杂交,从而产生大量子代植株;Transgenic corn event DBN9858 first parent corn plants tolerant to glyphosate and glufosinate herbicides were sexually crossed with second parent corn plants lacking glyphosate and/or glufosinate tolerance , resulting in a large number of progeny plants;
用草甘膦除草剂和草铵膦除草剂处理所述子代植株;Treating the progeny plants with glyphosate herbicide and glufosinate-ammonium herbicide;
选择耐受草甘膦和草铵膦的所述子代植株。The progeny plants are selected for tolerance to glyphosate and glufosinate.
为实现上述目的,本发明还提供了一种培养对草甘膦除草剂具有耐受性的玉米植物的方法,包括:To achieve the above object, the present invention also provides a method of cultivating a corn plant tolerant to glyphosate herbicides, comprising:
种植至少一粒玉米种子,所述玉米种子的基因组中包括编码草甘膦耐受性EPSPS的核酸序列和特定区域的核酸序列;Planting at least one corn seed, the genome of the corn seed includes a nucleic acid sequence encoding a glyphosate-tolerant EPSPS and a nucleic acid sequence in a specific region;
使所述玉米种子长成玉米植株;growing the corn seeds into corn plants;
用有效剂量草甘膦除草剂喷洒所述玉米植株,收获与其他不具有特定区域的核酸序列的植株相比具有减弱的植物损伤的植株;Spraying the corn plants with an effective dose of glyphosate herbicide, harvesting plants with reduced plant damage compared with other plants that do not have the nucleic acid sequence of the specific region;
所述特定区域的核酸序列选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、 SEQ IDNO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列。The nucleic acid sequence of the specific region is selected from the group consisting of SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6 and SEQ ID NO:7 At least one nucleic acid sequence in the sequence shown.
为实现上述目的,本发明还提供了一种培养对草铵膦除草剂具有耐受性的玉米植物的方法,包括:To achieve the above object, the present invention also provides a method of cultivating a corn plant tolerant to glufosinate-ammonium herbicide, comprising:
种植至少一粒玉米种子,所述玉米种子的基因组中包括编码草铵膦耐受性PAT蛋白的核酸序列和特定区域的核酸序列;Planting at least one corn seed, the genome of the corn seed includes a nucleic acid sequence encoding a glufosinate-ammonium-tolerant PAT protein and a nucleic acid sequence in a specific region;
使所述玉米种子长成玉米植株;growing the corn seeds into corn plants;
用有效剂量草铵膦除草剂喷洒所述玉米植株,收获与其他不具有特定区域的核酸序列的植株相比具有减弱的植物损伤的植株;Spraying the corn plants with an effective dose of glufosinate-ammonium herbicide, and harvesting plants with reduced plant damage compared with other plants that do not have the nucleic acid sequence of the specific region;
所述特定区域的核酸序列选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ IDNO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列。The nucleic acid sequence of the specific region is selected from the group consisting of SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6 and SEQ ID NO:7 At least one nucleic acid sequence in the sequence shown.
为实现上述目的,本发明还提供了一种培养对草甘膦除草剂和草铵膦除草剂具有耐受性的玉米植物的方法,包括:To achieve the above object, the present invention also provides a method of cultivating a corn plant tolerant to glyphosate herbicides and glufosinate-ammonium herbicides, comprising:
种植至少一粒玉米种子,所述玉米种子的基因组中包括编码草甘膦耐受性EPSPS蛋白的核酸序列、编码草铵膦耐受性PAT蛋白的核酸序列和特定区域的核酸序列;Planting at least one corn seed, the genome of the corn seed includes a nucleic acid sequence encoding a glyphosate-tolerant EPSPS protein, a nucleic acid sequence encoding a glufosinate-ammonium-tolerant PAT protein, and a nucleic acid sequence in a specific region;
使所述玉米种子长成玉米植株;growing the corn seeds into corn plants;
用有效剂量草甘膦除草剂和草铵膦除草剂喷洒所述玉米植株,收获与其他不具有特定区域的核酸序列的植株相比具有减弱的植物损伤的植株;Spraying the corn plants with an effective dose of glyphosate herbicide and glufosinate-ammonium herbicide, and harvesting plants with reduced plant damage compared with other plants that do not have the nucleic acid sequence of the specific region;
所述特定区域的核酸序列选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ IDNO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列。The nucleic acid sequence of the specific region is selected from the group consisting of SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6 and SEQ ID NO:7 At least one nucleic acid sequence in the sequence shown.
为实现上述目的,本发明还提供了一种保护植物免受由除草剂引起的损伤的方法,包括将含有有效剂量草甘膦和/或草铵膦的除草剂施加到种植至少一种转基因玉米植物的大田中,所述转基因玉米植物在其基因组中包含选自SEQ ID NO:1、SEQ ID NO:2、SEQID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列,所述转基因玉米植物具有对草甘膦除草剂和/或草铵膦除草剂的耐受性。To achieve the above object, the present invention also provides a method for protecting plants from damage caused by herbicides, comprising applying herbicides containing effective doses of glyphosate and/or glufosinate to planting at least one transgenic corn In the field of plants, the transgenic maize plant comprises in its genome a gene selected from the group consisting of SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO: 6 and at least one nucleic acid sequence in the sequence shown in SEQ ID NO: 7, the transgenic corn plant has tolerance to glyphosate herbicide and/or glufosinate-ammonium herbicide.
为实现上述目的,本发明还提供了一种控制田间杂草的方法,包括将含有有效剂量草甘膦和/或草铵膦的除草剂施加到种植至少一种转基因玉米植物的大田中,所述转基因玉米植物在其基因组中包含选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列,所述转基因玉米植物具有对草甘膦除草剂和/或草铵膦除草剂的耐受性。To achieve the above object, the present invention also provides a method for controlling field weeds, comprising applying herbicides containing effective doses of glyphosate and/or glufosinate-ammonium to a field where at least one transgenic corn plant is planted, so The transgenic maize plant comprises in its genome a gene selected from the group consisting of SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6 and SEQ ID NO At least one nucleic acid sequence in the sequence shown in 7, the transgenic corn plant has tolerance to glyphosate herbicide and/or glufosinate-ammonium herbicide.
为实现上述目的,本发明还提供了一种控制草甘膦耐受性植物的大田中草 甘膦抗性杂草的方法,包括将含有有效剂量草铵膦的除草剂施加到种植至少一种草甘膦耐受性的转基因玉米植物的大田中,所述草甘膦耐受性的转基因玉米植物在其基因组中包含选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQID NO:7所示序列中至少一种核酸序列,所述草甘膦耐受性的转基因玉米植物同时具有对草铵膦除草剂的耐受性。To achieve the above object, the present invention also provides a method for controlling glyphosate-resistant weeds in the field of glyphosate-tolerant plants, comprising applying a herbicide containing an effective dose of glufosinate to planting at least one In a field of a glyphosate-tolerant transgenic maize plant comprising in its genome a gene selected from the group consisting of SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3 , SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO: 6 and at least one nucleic acid sequence in the sequences shown in SEQ ID NO: 7, the glyphosate-tolerant transgenic corn plant also has paraglutamic acid ammonium Phosphate herbicide tolerance.
为实现上述目的,本发明还提供了一种延缓昆虫抗性的方法,包括在种植抗虫玉米植物的大田中种植至少一种具有草甘膦和/或草铵膦耐受性的转基因玉米植物,所述草甘膦耐受性的转基因玉米植物在其基因组中包含选自SEQ ID NO:1、SEQ ID NO:2、SEQ IDNO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列。To achieve the above object, the present invention also provides a method for delaying insect resistance, comprising planting at least one transgenic corn plant tolerant to glyphosate and/or glufosinate in a field where insect-resistant corn plants are planted , the glyphosate-tolerant transgenic maize plant comprises in its genome a gene selected from the group consisting of SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO: At least one nucleic acid sequence in the sequences shown in ID NO:6 and SEQ ID NO:7.
为实现上述目的,本发明还提供了一种包含SEQ ID NO:1或SEQ ID NO:2的多核苷酸的农产品或商品,所述农产品或商品为玉米粉、玉米面、玉米油、玉米淀粉、玉米面筋、玉米饼、化妆品或填充剂。To achieve the above object, the present invention also provides an agricultural product or commodity comprising a polynucleotide of SEQ ID NO:1 or SEQ ID NO:2, wherein the agricultural product or commodity is corn flour, cornmeal, corn oil, cornstarch, Corn gluten, tortillas, cosmetics or fillers.
在本发明用于检测抗除草剂玉米植物的核酸序列及其检测方法中,以下定义和方法可以更好地定义本发明和指导本领域的普通技术人员实施本发明,除非另作说明,根据本领域普通技术人员的常规的用法来理解术语。In the nucleic acid sequence of the present invention for detecting herbicide-resistant corn plants and its detection method, the following definitions and methods can better define the present invention and guide those of ordinary skill in the art to implement the present invention, unless otherwise specified, according to the present invention Conventional usage by those of ordinary skill in the art is to understand the terms.
所述“玉米”是指玉蜀黍(Zea mays),并且包括可以与玉米交配的所有植物品种,包括野生玉米种。The term "maize" refers to Zea mays and includes all plant species that can be crossed with maize, including wild maize species.
术语“包含”是指“包括但不限于”。The term "comprising" means "including but not limited to".
术语“植物”包括整株植物、植物细胞、植物器官、植物原生质体、植物可以从中再生的植物细胞组织培养物、植物愈伤组织、植物丛(plant clumps)和植物或植物部分中完整的植物细胞,所述植物部分例如胚、花粉、胚珠、种子、叶、花、枝、果实、茎秆、根、根尖、花药等。应理解为本发明范围内的转基因植物的部分包括但不限于植物细胞、原生质体、组织、愈伤组织、胚以及花、茎、果实、叶和根,以上植物部分源自事先用本发明的DNA分子转化的并因此至少部分地由转基因细胞组成的转基因植物或其子代。The term "plant" includes whole plants, plant cells, plant organs, plant protoplasts, plant cell tissue cultures from which plants can be regenerated, plant calli, plant clumps and whole plants in plants or plant parts Cells, said plant parts such as embryos, pollen, ovules, seeds, leaves, flowers, branches, fruits, stalks, roots, root tips, anthers, and the like. Parts of transgenic plants that are understood to be within the scope of the present invention include, but are not limited to, plant cells, protoplasts, tissues, callus, embryos, as well as flowers, stems, fruits, leaves and roots, the above plant parts being derived from the A transgenic plant transformed with a DNA molecule and thus consisting at least in part of a transgenic cell, or its progeny.
术语“基因”是指表达特定蛋白的核酸片段,包括编码序列前的调节序列(5’非编码序列)和编码序列后的调节序列(3’非编码序列)。“天然基因”是指天然发现具有其自身调节序列的基因。“嵌合基因”是指不是天然基因的任何基因,其包含非天然发现的调节和编码序列。“内源基因”是指天然基因,所述天然基因位于生物体基因组中它的天然位置。“外源基因”是现存在于生物的基因组中且原来不存在的外来基因,也指经转基因步骤导入受体细胞的基因。外源基因可以包含插入非天然生物体的天然基因或嵌合基因。“转基因”是通过转化程序已经被引入基因组的基因。植物基因组中重组DNA已被插入的位点可以称为“插入位点”或“靶位点”。The term "gene" refers to a nucleic acid fragment that expresses a specific protein, including regulatory sequences before the coding sequence (5' non-coding sequence) and regulatory sequences after the coding sequence (3' non-coding sequence). "Native gene" refers to a gene that is found in nature with its own regulatory sequences. "Chimeric gene" refers to any gene that is not a native gene, comprising regulatory and coding sequences not found in nature. "Endogenous gene" refers to a native gene in its natural location in the genome of an organism. "Exogenous gene" is a foreign gene that exists in the genome of an organism and does not exist before, and also refers to a gene that is introduced into a recipient cell through a transgenic procedure. Foreign genes may comprise native or chimeric genes inserted into a non-native organism. A "transgene" is a gene that has been introduced into the genome by a transformation procedure. The site in the plant genome where the recombinant DNA has been inserted may be referred to as the "insertion site" or "target site".
“侧翼DNA”可以包含天然存在于例如植物的生物体中的基因组或通过 转化过程引入的外源(异源)DNA,例如与转化事件相关的片段。因此,侧翼DNA可以包括天然和外源DNA的组合。在本发明中,“侧翼区”或“侧翼序列”或“基因组边界区”或“基因组边界序列”是指至少3、5、10、11、15、20、50、100、200、300、400、1000、1500、2000、2500或5000碱基对或更长的序列,其位于最初外源插入DNA分子的直接上游或下游并且与最初外源插入DNA分子相邻。当该侧翼区位于下游时,其也可以称为“左边界侧翼”或“3’侧翼”或“3’基因组边界区”或“基因组3’边界序列”等。当该侧翼区位于上游时,其也可以称为“右边界侧翼”或“5’侧翼”或“5’基因组边界区”或“基因组5’边界序列”等。"Flanking DNA" may comprise the genome naturally present in an organism such as a plant or exogenous (heterologous) DNA introduced by a transformation process, such as a fragment associated with a transformation event. Thus, flanking DNA can include a combination of native and foreign DNA. In the present invention, "flanking region" or "flanking sequence" or "genome border region" or "genome border sequence" means at least 3, 5, 10, 11, 15, 20, 50, 100, 200, 300, 400 , 1000, 1500, 2000, 2500, or 5000 base pairs or longer of sequence that is located immediately upstream or downstream of and adjacent to the original exogenously inserted DNA molecule. When the flanking region is located downstream, it may also be referred to as "left border flank" or "3' flank" or "3' genomic border region" or "genomic 3' border sequence" and the like. When the flanking region is located upstream, it may also be referred to as "right border flank" or "5' flank" or "5' genomic border region" or "genomic 5' border sequence" and the like.
引起外源DNA的随机整合的转化程序会导致含有不同侧翼区的转化体,所述不同侧翼区是每个转化体所特异性含有的。当重组DNA通过传统杂交被引入植物时,其侧翼区通常不会改变。转化体也会含有异源插入物DNA和基因组DNA的段之间或两段基因组DNA之间或两段异源DNA之间的独特的接合。“接合”是两个具体的DNA片段连接的点。例如,接合存在于插入物DNA连接侧翼DNA的位置。接合点还存在于转化的生物体中,其中两个DNA片段以修饰自天然生物体中发现的方式的连接在一起。“接合DNA”是指包含接合点的DNA。Transformation procedures that result in random integration of exogenous DNA will result in transformants containing different flanking regions that are specific to each transformant. When recombinant DNA is introduced into plants by conventional crossing, its flanking regions are usually not altered. Transformants will also contain unique junctions between the heterologous insert DNA and the segment of genomic DNA or between two segments of genomic DNA or between two segments of heterologous DNA. A "junction" is the point at which two specific DNA segments join. For example, junctions exist where insert DNA joins flanking DNA. Junctions also exist in transformed organisms where two segments of DNA join together in a manner modified from that found in natural organisms. "Junction DNA" refers to DNA comprising a junction.
本发明提供了称为DBN9858的转基因玉米事件及其后代,所述转基因玉米事件DBN9858即为玉米植物DBN9858,其包括转基因玉米事件DBN9858的植物和种子及其植物细胞或其可再生部分,所述转基因玉米事件DBN9858的植物部分,包括但不限于细胞、花粉、胚珠、花、芽、根、茎、穗丝、花序、耳穗、叶和来自玉米植物DBN9858的产物,例如玉米粉、玉米面、玉米油、玉米浆、玉米穗丝、玉米淀粉和留在玉米作物田间的生物量。The present invention provides a transgenic maize event designated DBN9858, which is a maize plant DBN9858, including plants and seeds of transgenic maize event DBN9858 and plant cells or regenerable parts thereof, and progeny thereof, said transgenic maize event DBN9858 Plant parts of corn event DBN9858, including but not limited to cells, pollen, ovules, flowers, buds, roots, stems, tassels, inflorescences, ears, leaves, and products from corn plant DBN9858, such as corn flour, cornmeal, corn oil , corn steep liquor, corn silk, cornstarch and biomass left in corn crop fields.
本发明转基因玉米事件DBN9858包含了一个DNA构建体,当其在植物细胞内表达时,所述转基因玉米事件DBN9858获得对草甘膦除草剂和草铵膦除草剂的耐受性。所述DNA构建体包含两个串联的表达盒,第一个表达盒包含用于在植物中表达的适合的启动子和适合的多聚腺苷酸化信号序列,所述启动子可操作地连接编码5-烯醇丙酮酰莽草酸-3-磷酸合酶(EPSPS)的基因,所述EPSPS对草甘膦除草剂具有耐受性。第二个表达盒包含用于在植物中表达的适合的启动子和适合的多聚腺苷酸化信号序列,所述启动子可操作地连接编码膦丝菌素N-乙酰基转移酶(PAT)的基因,所述PAT蛋白的核酸序列对草铵膦除草剂具有耐受性。进一步地,所述启动子可以为从植物分离的适合启动子,包括组成型、诱导型和/或组织特异性启动子,所述适合启动子包括但不限于,花椰菜花叶病毒(CaMV)35S启动子、玄参花叶病毒(FMV)35S启动子、Tsf1启动子、泛素蛋白(Ubiquitin)启动子、肌动蛋白(Actin)启动子、土壤农杆菌(Agrobacterium tumefaciens)胭脂碱合成酶(NOS)启动子、章鱼碱合成酶(OCS) 启动子、夜香树属(Cestrum)黄叶卷曲病毒启动子、马铃薯块茎储藏蛋白(Patatin)启动子、核酮糖-1,5-二磷酸羧化酶/加氧酶(RuBisCO)启动子、谷胱甘肽硫转移酶(GST)启动子、E9启动子、GOS启动子、alcA/alcR启动子、毛根农杆菌(Agrobacterium rhizogenes)RolD启动子和拟南芥属(Arabidopsis)Suc2启动子。所述多聚腺苷酸化信号序列可以为在植物中起作用的适合多聚腺苷酸化信号序列,所述适合多聚腺苷酸化信号序列包括但不限于,来源于土壤农杆菌(Agrobacterium tumefaciens)胭脂碱合成酶(NOS)基因的多聚腺苷酸化信号序列、来源于花椰菜花叶病毒(CaMV)35S终止子、来源于豌豆核酮糖-1,5-二磷酸羧化酶/加氧酶E9终止子、来源于蛋白酶抑制剂Ⅱ(PINⅡ)基因的多聚腺苷酸化信号序列和来源于α-微管蛋白(α-tubulin)基因的多聚腺苷酸化信号序列。The transgenic maize event DBN9858 of the present invention comprises a DNA construct that, when expressed in plant cells, acquires tolerance to glyphosate herbicides and glufosinate-ammonium herbicides. The DNA construct comprises two expression cassettes in tandem, the first expression cassette comprising a suitable promoter for expression in plants and a suitable polyadenylation signal sequence, said promoter being operably linked to the Gene for 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS), which confers tolerance to the glyphosate herbicide. The second expression cassette comprises a suitable promoter for expression in plants operably linked to an enzyme encoding phosphinothricin N-acetyltransferase (PAT) and a suitable polyadenylation signal sequence The gene, the nucleic acid sequence of the PAT protein has tolerance to glufosinate-ammonium herbicide. Further, the promoter may be a suitable promoter isolated from a plant, including a constitutive, inducible and/or tissue-specific promoter, and the suitable promoter includes, but is not limited to, cauliflower mosaic virus (CaMV) 35S Promoter, Scrophulariaceae mosaic virus (FMV) 35S promoter, Tsf1 promoter, Ubiquitin promoter, Actin promoter, Agrobacterium tumefaciens nopaline synthase (NOS ) promoter, octopine synthase (OCS) promoter, Cestrum yellow leaf curl virus promoter, potato tuber storage protein (Patatin) promoter, ribulose-1,5-bisphosphate carboxylase /oxygenase (RuBisCO) promoter, glutathione sulfur transferase (GST) promoter, E9 promoter, GOS promoter, alcA/alcR promoter, Agrobacterium rhizogenes (Agrobacterium rhizogenes) RolD promoter and Arabidopsis Arabidopsis Suc2 promoter. The polyadenylation signal sequence may be a suitable polyadenylation signal sequence that functions in plants, and the suitable polyadenylation signal sequence includes, but is not limited to, derived from Agrobacterium tumefaciens Polyadenylation signal sequence of nopaline synthase (NOS) gene, derived from cauliflower mosaic virus (CaMV) 35S terminator, derived from pea ribulose-1,5-bisphosphate carboxylase/oxygenase E9 terminator, polyadenylation signal sequence derived from protease inhibitor II (PINII) gene and polyadenylation signal sequence derived from α-tubulin gene.
此外,所述表达盒还可以包括其他的遗传元件,所述遗传元件包括但不限于,增强子和信号肽/转运肽。所述增强子可以增强基因的表达水平,所述增强子包括但不限于,烟草蚀刻病毒(TEV)翻译激活因子、CaMV35S增强子和FMV35S增强子。所述信号肽/转运肽可以引导EPSPS蛋白和/或PAT蛋白转运到细胞外或者细胞内特定的细胞器或区室,例如,利用编码叶绿体转运肽序列靶向叶绿体,或者利用‘KDEL’保留序列靶向内质网。In addition, the expression cassette may also include other genetic elements including, but not limited to, enhancers and signal/transit peptides. The enhancer can enhance the expression level of the gene, and the enhancer includes, but is not limited to, tobacco etch virus (TEV) translation activator, CaMV35S enhancer and FMV35S enhancer. The signal peptide/transit peptide can guide the EPSPS protein and/or PAT protein to be transported to a specific organelle or compartment outside the cell or within the cell, for example, using the sequence encoding the chloroplast transit peptide to target the chloroplast, or using the 'KDEL' retained sequence target To the endoplasmic reticulum.
所述5-烯醇丙酮酰莽草酸-3-磷酸合酶(EPSPS)基因可以是从土壤农杆菌(Agrobacterium tumefaciens sp.)CP4菌株中分离得到的,且可以通过优化密码子或者以其他方式改变编码EPSPS的多核苷酸,以达到增加转化细胞中转录物的稳定性和可利用性的目的。所述5-烯醇丙酮酰莽草酸-3-磷酸合酶(EPSPS)基因也可以作为选择性标记基因。The 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) gene can be isolated from the Agrobacterium tumefaciens sp. CP4 strain, and can be changed by optimizing codons or in other ways Polynucleotides encoding EPSPS for the purpose of increasing the stability and availability of transcripts in transformed cells. The 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) gene can also serve as a selectable marker gene.
所述“草甘膦”是指N-膦酰甲基甘氨酸和它的盐,用“草甘膦除草剂”处理是指使用任何一种含有草甘膦的除草剂制剂进行处理。为了达到有效生物学剂量而对某种草甘膦制剂使用率的选择不超过普通农艺技术人员的技能。使用任何一种含有草甘膦的除草剂制剂处理包含了来源于抗除草剂玉米植物DBN9858的植物材料的田地,将控制所述田地中的杂草生长,并且不影响来源于除草剂耐受性玉米植物DBN9858的植物材料的生长或产量。The "glyphosate" refers to N-phosphonomethylglycine and its salts, and the treatment with "glyphosate herbicide" refers to the use of any herbicide formulation containing glyphosate. The selection of the application rate of a glyphosate formulation to achieve a biologically effective dose is within the skill of the ordinary agronomist. Treatment of a field containing plant material derived from herbicide resistant corn plant DBN9858 with any of the herbicide formulations containing glyphosate will control the growth of weeds in said field without affecting tolerance to the derived herbicide Growth or yield of plant material from maize plant DBN9858.
从链霉菌(Streptomyces viridochromogenes)分离的酶膦丝菌素N-乙酰基转移酶(phosphinothricin N-acetyltransferase,PAT)基因通过乙酰化催化L-膦丝菌素转化为其无活性形式,以赋予植物对草铵膦除草剂的耐受性。Phosphinothricin(PTC,2-氨基-4-甲膦酰丁酸)是谷氨酰胺合成酶的抑制剂。PTC是抗生素2-氨基-4-甲膦酰-丙氨酰-丙氨酸的结构单位,此三肽(PTT)具有抗革兰氏阳性和革兰氏阴性细菌以及抗真菌灰葡萄孢(Botrytis cinerea)的活性。膦丝菌素N-乙酰基转移酶(PAT)基因也可以作为选择性标记基因。The enzyme phosphinothricin N-acetyltransferase (PAT) gene isolated from Streptomyces viridochromogenes catalyzes the conversion of L-phosphinothricin to its inactive form through acetylation to endow plants with Tolerance to glufosinate-ammonium herbicide. Phosphinothricin (PTC, 2-amino-4-methylphosphonobutyric acid) is an inhibitor of glutamine synthetase. PTC is the structural unit of the antibiotic 2-amino-4-methylphosphonyl-alanyl-alanine. This tripeptide (PTT) has anti-gram-positive and gram-negative bacteria and anti-fungal Botrytis cinerea (Botrytis cinerea). cinerea) activity. The phosphinothricin N-acetyltransferase (PAT) gene can also serve as a selectable marker gene.
所述“草铵膦”又名草丁膦,是指2-氨基-4-[羟基(甲基)膦酰基]丁酸铵,用 “草铵膦除草剂”处理是指使用任何一种含有草铵膦的除草剂制剂进行处理。为了达到有效生物学剂量而对某种草铵膦制剂使用率的选择不超过普通农艺技术人员的技能。使用任何一种含有草铵膦的除草剂制剂处理包含了来源于除草剂耐受性玉米植物DBN9858的植物材料的田地,将控制所述田地中的杂草生长,并且不影响来源于除草剂耐受性玉米植物DBN9858的植物材料的生长或产量。The "glufosinate-ammonium", also known as glufosinate, refers to 2-amino-4-[hydroxyl (methyl) phosphono] ammonium butyrate, and the treatment with "glufosinate-ammonium herbicide" refers to the use of any one containing Glufosinate-ammonium herbicide formulations. The selection of the application rate of a glufosinate-ammonium formulation to achieve a biologically effective dose is within the skill of the average agronomist. Treatment of a field containing plant material derived from herbicide-tolerant maize plant DBN9858 with any of the herbicide formulations containing glufosinate will control the growth of weeds in said field without affecting the Growth or yield of plant material from a receptive maize plant DBN9858.
所述DNA构建体采用转化方法被引入到植物中,所述转化方法包括但不限于,农杆菌(Agrobacterium)介导转化法、基因枪转化法和花粉管通道转化法。The DNA construct is introduced into the plant using a transformation method including, but not limited to, Agrobacterium-mediated transformation, biolistic transformation, and pollen tube passage transformation.
所述农杆菌介导转化法是植物转化的常用方法。将要引入到植物中的外源DNA克隆到载体的左和右边界共有序列之间,即T-DNA区。所述载体被转化到农杆菌细胞中,随后,所述农杆菌细胞用于感染植物组织,包含外源DNA的载体的所述T-DNA区被插入到植物基因组中。The Agrobacterium-mediated transformation method is a common method for plant transformation. The foreign DNA to be introduced into the plant is cloned between the left and right border consensus sequences of the vector, ie the T-DNA region. The vector is transformed into Agrobacterium cells, which are then used to infect plant tissues, and the T-DNA region of the vector containing foreign DNA is inserted into the plant genome.
所述基因枪转化法即为用包含外源DNA的载体轰击植物细胞(粒子介导的生物弹击转化)。The gene bombardment transformation method is bombarding plant cells with a vector containing foreign DNA (particle-mediated biolistic transformation).
所述花粉管通道转化法是利用植物授粉后所形成的天然的花粉管通道(又名花粉管引导组织),经珠心通道,将外源DNA携带入胚囊。The pollen tube channel transformation method utilizes the natural pollen tube channel (also known as pollen tube guiding tissue) formed after plant pollination to carry exogenous DNA into the embryo sac through the nucellus channel.
转化后,必须从转化的植物组织再生转基因植物,并且利用适合的标记选择具有外源DNA的后代。Following transformation, transgenic plants must be regenerated from the transformed plant tissue, and appropriate markers used to select for progeny bearing the foreign DNA.
DNA构建体是DNA分子互相连接起来的组合,该组合提供了一个或多个表达盒。DNA构建体优选地是能够在细菌细胞内自我复制,而且含有不同的限制性内切酶位点的质粒,所含的限制性内切酶位点用于导入提供功能性基因元件,即启动子、内含子、前导序列、编码序列、3’终止子区域和其他序列的DNA分子。DNA构建体中所含有的表达盒包括提供信使RNA的转录所必需的基因元件,所述表达盒可以设计为在原核细胞或真核细胞中表达。本发明的表达盒被设计为最优选地在植物细胞内表达。A DNA construct is an interconnected assembly of DNA molecules that provides one or more expression cassettes. The DNA construct is preferably a plasmid capable of self-replicating in bacterial cells and containing various restriction endonuclease sites for introduction to provide a functional genetic element, i.e. a promoter , introns, leader sequences, coding sequences, 3' terminator regions and other sequences of DNA molecules. The expression cassette contained in the DNA construct includes the genetic elements necessary to provide transcription of the messenger RNA and can be designed for expression in prokaryotic or eukaryotic cells. The expression cassettes of the invention are designed for expression most preferably in plant cells.
转基因“事件”是通过用异源DNA构建体转化植物细胞而得到的,即包括一个含有目标基因的核酸表达盒,通过转基因的方法插入到植物基因组中以产生的植物群体,再生所述植物群体,和选择具有插入特定基因组位点特征的特定植株。术语“事件”指包括异源DNA的原始转化体和该转化体的后代。术语“事件”还指转化体和含有异源DNA的其他品种个体之间进行有性杂交而得到的后代,即使在与回交亲本进行反复回交后,来自于转化体亲本的插入DNA和侧翼基因组DNA也存在于杂交后代中的同一染色体位置。术语“事件”还指来自原始转化体的DNA序列,该DNA序列包含插入DNA和与插入DNA紧密相邻的侧翼基因组序列,该DNA序列被预期转移到子代中,该子代由含有插入DNA的亲本系(例如原始转化体和其自交产生的子代)与不含有插入DNA的亲本系进行有性杂交而产生,且该子代接受了包含目标基因的插入DNA。A transgenic "event" is obtained by transforming a plant cell with a heterologous DNA construct, i.e., comprising a nucleic acid expression cassette containing the gene of interest, inserted transgenically into the plant genome to produce a plant population, regenerating said plant population , and select specific plants with features inserted into specific genomic loci. The term "event" refers to the original transformant comprising heterologous DNA and the progeny of that transformant. The term "event" also refers to the progeny of a sexual cross between a transformant and an individual of another breed containing heterologous DNA, even after repeated backcrosses with the backcross parent, the insert DNA and flanking Genomic DNA is also present at the same chromosomal location in hybrid offspring. The term "event" also refers to a DNA sequence from an original transformant comprising the insert DNA and flanking genomic sequences in close proximity to the insert DNA, which DNA sequence is expected to be transferred to progeny derived from cells containing the insert DNA The parental line (such as the original transformant and its progeny produced by selfing) is sexually crossed with a parental line that does not contain the inserted DNA, and the progeny receive the inserted DNA containing the gene of interest.
本发明中“重组”是指通常不能在自然界中发现并且因此通过人工干预产 生的DNA和/或蛋白和/或生物体的形式。这种人工干预可产生重组DNA分子和/或重组植物。所述“重组DNA分子”是通过人工组合两种在其他情况下是分离的序列区段而获得的,例如通过化学合成或通过遗传工程技术操作分离的核酸区段。进行核酸操作的技术是众所周知的。"Recombinant" in the present invention refers to a form of DNA and/or protein and/or organism that is not normally found in nature and thus produced by human intervention. Such human intervention can produce recombinant DNA molecules and/or recombinant plants. Said "recombinant DNA molecule" is obtained by the artificial combination of two otherwise separate sequence segments, such as by chemical synthesis or by manipulation of separate nucleic acid segments by genetic engineering techniques. The techniques for performing nucleic acid manipulations are well known.
术语“转基因”包括任何细胞、细胞系、愈伤组织、组织、植物部分或植物,以上的基因型由于异源核酸的存在而改变,所述“转基因”包括最初被这样改变的转基因体以及由最初的转基因体通过有性杂交或无性繁殖生成的子代个体。在本发明中,术语“转基因”不包括通过常规植物育种方法或天然发生事件的基因组的(染色体的或染色体外的)改变,所述天然发生事件例如随机异体受精、非重组病毒感染、非重组细菌转化、非重组转座或自发突变。The term "transgenic" includes any cell, cell line, callus, tissue, plant part or plant, the genotype of which is altered by the presence of heterologous nucleic acid, said "transgenic" including transgenics originally so altered as well as those derived from The offspring individuals produced by the original transgenic body through sexual crossing or asexual reproduction. In the present invention, the term "transgenic" does not include alterations of the genome (chromosomal or extrachromosomal) by conventional plant breeding methods or naturally occurring events such as random heterozygous fertilization, non-recombinant viral infection, non-recombinant Bacterial transformation, non-recombinant transposition, or spontaneous mutation.
本发明中“异源的”是指自然界中第一分子通常不被发现与第二分子组合。例如,分子可以源自第一物种并插入到第二物种的基因组中。因此这种分子对于宿主是异源的并被人工引入宿主细胞的基因组中。"Heterologous" in the context of the present invention means that a first molecule is not normally found in combination with a second molecule in nature. For example, a molecule can be derived from a first species and inserted into the genome of a second species. This molecule is thus heterologous to the host and is artificially introduced into the genome of the host cell.
培养对草甘膦除草剂和草铵膦除草剂具有耐受性的转基因玉米事件DBN9858,通过以下步骤:首先使第一亲本玉米植物与第二亲本玉米植物有性杂交,从而产生了多样的第一代子代植株,所述第一亲本玉米植物由培育自转基因玉米事件DBN9858及其后代的玉米植物组成,该转基因玉米事件DBN9858及其后代是通过利用本发明的对草甘膦除草剂和草铵膦除草剂具有耐受性的表达盒进行转化而得到的,第二亲本玉米植物缺乏对草甘膦除草剂和/或草铵膦除草剂的耐受性;然后选择对草甘膦除草剂和/或草铵膦除草剂的施用具有耐受性的子代植株,可以培育出对草甘膦除草剂和草铵膦除草剂具有耐受性的玉米植物。这些步骤可以进一步包括使对草甘膦除草剂和/或草铵膦除草剂的施用具有耐受性的子代植株与第二亲本玉米植物或第三亲本玉米植物进行回交,然后通过施用草甘膦除草剂、草铵膦除草剂或通过与性状相关的分子标记物(如包含转基因玉米事件DBN9858中插入序列的5’端和3’端鉴定出的接合位点的DNA分子)的鉴定来选择子代,从而产生对草甘膦除草剂和草铵膦除草剂具有耐受性的玉米植物。Transgenic maize event DBN9858, tolerant to glyphosate herbicide and glufosinate herbicide, was developed by first sexually crossing a first parent maize plant with a second parent maize plant, resulting in diverse second A generation of progeny plants, the first parent corn plant consisting of corn plants bred from transgenic corn event DBN9858 and its progeny by utilizing the herbicides against glyphosate and grasses of the present invention transformed with an expression cassette for tolerance to the ammonium phosphonate herbicide, the second parent maize plant lacking tolerance to the glyphosate herbicide and/or the glufosinate-ammonium herbicide; And/or progeny plants that are tolerant to the application of glufosinate-ammonium herbicide can breed corn plants that are tolerant to glyphosate-ammonium herbicide and glufosinate-ammonium herbicide. These steps may further comprise backcrossing progeny plants tolerant to the application of glyphosate herbicides and/or glufosinate-ammonium herbicides to the second parent corn plant or the third parent corn plant, followed by application of grass Glyphosate herbicides, glufosinate-ammonium herbicides, or by identification of trait-associated molecular markers such as DNA molecules containing the junction sites identified at the 5' and 3' ends of the insert sequence in transgenic maize event DBN9858 Progeny are selected to produce corn plants tolerant to glyphosate and glufosinate herbicides.
还应理解的是,两种不同的转基因植物也可以杂交以产生含有两个独立的、分离式添加的外源基因的后代。适当后代的自交可以得到对两个添加的外源基因来说都是纯合子的后代植株。如前所述的对亲本植株的回交和与非转基因植物的异型杂交也是可以预期的,无性繁殖也是同样的。It should also be understood that two different transgenic plants can also be crossed to produce progeny that contain two independent, segregated additions of the exogenous gene. Selfing of suitable progeny can result in progeny plants that are homozygous for both added exogenous genes. Backcrossing to parental plants and outcrossing to non-transgenic plants are also contemplated as previously described, as is vegetative propagation.
转Bt基因的玉米能杀死例如鳞翅目和鞘翅目的昆虫/害虫,但也存在少量存活下来的昆虫/害虫,经过几代繁殖后,可能产生抗Bt蛋白的抗性昆虫/害虫。为了解决昆虫/害虫产生抗性这个问题,美国环境保护局针对转基因作物的使用给出了如下指导,需提供一定比例的庇护所玉米(关于庇护所玉米要求根据产品不同有5%、10%、20%等。并且可以是非抗虫转基因玉米(如除草剂耐受性 转基因玉米),或抗非目标害虫的玉米,并非一定是非转基因玉米)。当绝大部分的昆虫/害虫在相应的转基因抗虫玉米上被杀死后,还有一部分昆虫/害虫在庇护所玉米上没有死,保证了没有抗性的昆虫/害虫群体占统治数量。这样即使有少量存活的抗性昆虫/害虫,与占统治数量的非抗性昆虫/害虫交配后抗性基因也被显著的稀释了。Bt gene-transformed corn can kill insects/pests such as Lepidoptera and Coleoptera, but there are also a small number of surviving insects/pests. After several generations of reproduction, resistant insects/pests against Bt protein may be produced. In order to solve the problem of insect/pest resistance, the U.S. Environmental Protection Agency has given the following guidelines for the use of genetically modified crops, and a certain proportion of shelter corn is required (the requirements for shelter corn vary from 5%, 10%, and 10% depending on the product. 20%, etc. and can be non-insect resistant GM corn (such as herbicide tolerant GM corn), or corn resistant to non-target pests, not necessarily non-GM corn). When most of the insects/pests are killed on the corresponding transgenic insect-resistant corn, some insects/pests are not dead on the shelter corn, which ensures that the insects/pest groups without resistance account for the dominant number. In this way, even if there are a small number of surviving resistant insects/pests, the resistance genes are significantly diluted after mating with the dominant number of non-resistant insects/pests.
术语“探针”是一段分离的核酸分子,其上面结合有常规的可检测标记或报告分子,例如,放射性同位素、配体、化学发光剂或酶类。这种探针与目标核酸的一条链是互补的,在本发明中,探针与来自转基因玉米事件DBN9858基因组的一条DNA链互补,不论该基因组DNA是来自转基因玉米事件DBN9858或种子还是来源于转基因玉米事件DBN9858的植物或种子或提取物。本发明的探针不仅包括脱氧核糖核酸或核糖核酸,还包括特异性地与目标DNA序列结合并可用于检测该目标DNA序列的存在的聚酰胺及其他探针材料。The term "probe" is an isolated nucleic acid molecule to which is bound a conventional detectable label or reporter molecule, eg, a radioisotope, ligand, chemiluminescent agent or enzyme. Such probes are complementary to one strand of the target nucleic acid, and in the present invention, the probe is complementary to one strand of DNA from the genome of transgenic maize event DBN9858, whether the genomic DNA is from transgenic maize event DBN9858 or the seed or derived from the transgene Plant or seed or extract of maize event DBN9858. The probes of the present invention include not only deoxyribonucleic acid or ribonucleic acid, but also polyamides and other probe materials that specifically bind to a target DNA sequence and can be used to detect the presence of the target DNA sequence.
术语“引物”是一段分离的核酸分子,其通过核酸杂交,退火结合到互补的目标DNA链上,在引物和目标DNA链之间形成杂合体,然后在聚合酶(例如DNA聚合酶)的作用下,沿目标DNA链延伸。本发明的引物对涉及其在目标核酸序列扩增中的应用,例如,通过聚合酶链式反应(PCR)或其他常规的核酸扩增方法。The term "primer" is an isolated nucleic acid molecule that, by nucleic acid hybridization, anneals to a complementary target DNA strand, forms a hybrid between the primer and target DNA strand, and then reacts with a polymerase (eg, DNA polymerase) Bottom, stretches along the target DNA strand. The primer pairs of the present invention relate to their use in the amplification of target nucleic acid sequences, for example, by polymerase chain reaction (PCR) or other conventional nucleic acid amplification methods.
探针和引物的长度一般是11个多核苷酸或更多,优选的是18个多核苷酸或更多,更优选的是24个多核苷酸或更多,最优选的是30个多核苷酸或更多。这种探针和引物在高度严格杂交条件下与目标序列特异性地杂交。尽管不同于目标DNA序列且对目标DNA序列保持杂交能力的探针是可以通过常规方法设计出来的,但是,优选的,本发明中的探针和引物与目标序列的连续核酸具有完全的DNA序列同一性。Probes and primers are generally 11 polynucleotides or more in length, preferably 18 polynucleotides or more, more preferably 24 polynucleotides or more, most preferably 30 polynucleotides in length sour or more. Such probes and primers hybridize specifically to the target sequence under highly stringent hybridization conditions. Although probes that are different from the target DNA sequence and maintain the ability to hybridize to the target DNA sequence can be designed by conventional methods, preferably, the probes and primers in the present invention have complete DNA sequences with the continuous nucleic acid of the target sequence identity.
基于本发明的侧翼基因组DNA和插入序列的引物和探针可以通过常规方法确定,例如,通过从来源于转基因玉米事件DBN9858的植物材料中分离相应的DNA分子,并确定该DNA分子的核酸序列。所述DNA分子包含转基因插入序列和玉米基因组侧翼区域,所述DNA分子的片段可以用作引物或探针。The primers and probes based on the flanking genomic DNA and the insert sequence of the present invention can be determined by conventional methods, for example, by isolating the corresponding DNA molecule from the plant material derived from the transgenic maize event DBN9858, and determining the nucleic acid sequence of the DNA molecule. The DNA molecule contains the transgene insertion sequence and the maize genome flanking region, and the fragments of the DNA molecule can be used as primers or probes.
本发明的核酸探针和引物在严格条件下与目标DNA序列杂交。任何常规的核酸杂交或扩增方法都可以用于鉴定样品中来源于转基因玉米事件DBN9858的DNA的存在。核酸分子或其片段在一定情况下能够与其他核酸分子进行特异性杂交。如本发明使用的,如果两个核酸分子能形成反平行的双链核酸结构,就可以说这两个核酸分子彼此间能够进行特异性杂交。如果两个核酸分子显示出完全的互补性,则称其中一个核酸分子是另一个核酸分子的“互补物”。如本发明使用的,当一个核酸分子的每一个核苷酸都与另一个核酸分子的对应核苷酸互补时,则称这两个核酸分子显示出“完全互补性”。如果两个核酸分子能够以足够的稳定性相互杂交从而使它们在至少常规的“低度严格”条件下退火 且彼此结合,则称这两个核酸分子为“最低程度互补”。类似地,如果两个核酸分子能够以足够的稳定性相互杂交从而使它们在常规的“高度严格”条件下退火且彼此结合,则称这两个核酸分子具有“互补性”。从完全互补性中偏离是可以允许的,只要这种偏离不完全阻止两个分子形成双链结构。为了使一个核酸分子能够作为引物或探针,仅需保证其在序列上具有充分的互补性,以使得在所采用的特定溶剂和盐浓度下能形成稳定的双链结构。The nucleic acid probes and primers of the invention hybridize to target DNA sequences under stringent conditions. Any conventional nucleic acid hybridization or amplification method can be used to identify the presence of DNA derived from transgenic maize event DBN9858 in a sample. Nucleic acid molecules or fragments thereof are capable of specifically hybridizing to other nucleic acid molecules under certain circumstances. As used herein, two nucleic acid molecules are said to be capable of specifically hybridizing to each other if the two nucleic acid molecules are capable of forming an antiparallel double-stranded nucleic acid structure. A nucleic acid molecule is said to be the "complement" of another nucleic acid molecule if two nucleic acid molecules exhibit perfect complementarity. As used herein, two nucleic acid molecules are said to exhibit "perfect complementarity" when every nucleotide of one nucleic acid molecule is complementary to the corresponding nucleotide of the other nucleic acid molecule. Two nucleic acid molecules are said to be "minimally complementary" if they are capable of hybridizing to each other with sufficient stability such that they anneal and bind to each other under at least conventional "low stringency" conditions. Similarly, two nucleic acid molecules are said to be "complementary" if they are capable of hybridizing to each other with sufficient stability such that they anneal and bind to each other under conventional "high stringency" conditions. Deviations from perfect complementarity are permissible as long as the deviation does not completely prevent the two molecules from forming a double-stranded structure. In order for a nucleic acid molecule to serve as a primer or probe, it only needs to be sufficiently complementary in sequence to form a stable double-stranded structure under the particular solvent and salt concentration employed.
如本发明使用的,基本同源的序列是一段核酸分子,该核酸分子在高度严格条件下能够和相匹配的另一段核酸分子的互补链发生特异性杂交。促进DNA杂交的适合的严格条件,例如,大约在45℃条件下用6.0×氯化钠/柠檬酸钠(SSC)处理,然后在50℃条件下用2.0×SSC洗涤,这些条件对本领域技术人员是公知的。例如,在洗涤步骤中的盐浓度可以选自低度严格条件的约2.0×SSC、50℃到高度严格条件的约0.2×SSC、50℃。此外,洗涤步骤中的温度条件可以从低度严格条件的室温约22℃,升高到高度严格条件的约65℃。温度条件和盐浓度可以都发生改变,也可以其中一个保持不变而另一个变量发生改变。优选地,本发明的一个核酸分子可以在中度严格条件下,例如在约2.0×SSC和约65℃下与SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7中一个或多个核酸分子或其互补序列,或者上述序列的任一片段发生特异性杂交。更优选地,本发明的一个核酸分子在高度严格条件下与SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7中一个或多个核酸分子或其互补序列,或者上述序列的任一片段发生特异性杂交。本发明中,优选的标记物核酸分子具有SEQ IDNO:1、SEQ ID NO:2、SEQ ID NO:6或SEQ ID NO:7或其互补序列,或者上述序列的任一片段。本发明另一优选的标记物核酸分子与SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:6或SEQ IDNO:7或其互补序列,或者上述序列的任一片段具有80%到100%或90%到100%的序列同一性。SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:6和SEQ ID NO:7可以用作植物育种方法中的标记物以鉴定遗传杂交的后代。探针与目标DNA分子的杂交可以通过任何一种为本领域技术人员所熟知的方法进行检测,这些方法包括但不限于,荧光标记、放射性标记、抗体类标记和化学发光标记。As used herein, a substantially homologous sequence is a nucleic acid molecule that is capable of specifically hybridizing to a matching complementary strand of another nucleic acid molecule under highly stringent conditions. Suitable stringent conditions to promote DNA hybridization, for example, treatment with 6.0× sodium chloride/sodium citrate (SSC) at about 45° C., followed by washing with 2.0× SSC at 50° C., are known to those skilled in the art. is well known. For example, the salt concentration in the washing step can be selected from about 2.0×SSC, 50°C for low stringency conditions to about 0.2×SSC, 50°C for high stringency conditions. In addition, the temperature conditions in the washing step can be increased from about 22°C at room temperature for low stringency conditions to about 65°C for high stringency conditions. Both the temperature condition and the salt concentration can be changed, or one can be kept constant while the other variable is changed. Preferably, a nucleic acid molecule of the present invention can be combined with SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO: 4. One or more nucleic acid molecules in SEQ ID NO: 5, SEQ ID NO: 6 and SEQ ID NO: 7 or their complementary sequences, or any fragment of the above sequences specifically hybridize. More preferably, a nucleic acid molecule of the present invention is combined with SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6 under highly stringent conditions Specific hybridization occurs with one or more nucleic acid molecules in SEQ ID NO: 7 or its complementary sequence, or any fragment of the above sequence. In the present invention, the preferred marker nucleic acid molecule has SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 6 or SEQ ID NO: 7 or its complementary sequence, or any fragment of the above sequence. Another preferred marker nucleic acid molecule of the present invention has 80% to 100% to SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 6 or SEQ ID NO: 7 or its complementary sequence, or any fragment of the above sequence % or 90% to 100% sequence identity. SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:6 and SEQ ID NO:7 can be used as markers in plant breeding methods to identify progeny of genetic crosses. The hybridization of the probe to the target DNA molecule can be detected by any method known to those skilled in the art, including but not limited to fluorescent labeling, radioactive labeling, antibody-based labeling and chemiluminescent labeling.
关于使用特定的扩增引物对目标核酸序列进行的扩增(例如,通过PCR),“严格条件”指的是在DNA热扩增反应中仅允许引物对目标核酸序列发生杂交的条件,具有与目标核酸序列相应的野生型序列(或其互补序列)的引物,能够与所述目标核酸序列结合,并且优选产生唯一的扩增产物,扩增产物即扩增子。With respect to the amplification of a target nucleic acid sequence using specific amplification primers (for example, by PCR), "stringent conditions" refer to conditions that allow only the primers to hybridize to the target nucleic acid sequence in a DNA thermal amplification reaction, with the same The primer corresponding to the wild-type sequence (or its complementary sequence) of the target nucleic acid sequence is capable of binding to the target nucleic acid sequence, and preferably produces a unique amplification product, the amplification product being an amplicon.
术语“特异性结合(目标序列)”是指在严格杂交条件下探针或引物仅与包含目标序列的样品中的目标序列发生杂交。The term "specifically binds (to a target sequence)" means that under stringent hybridization conditions a probe or primer hybridizes only to a target sequence in a sample containing the target sequence.
如本发明使用的,“经过扩增的DNA”或“扩增子”是指作为核酸模板一部分的目标核酸序列的核酸扩增产物。例如,为了确定玉米植物是否由含有本发明转基因玉米事件DBN9858通过有性杂交方式产生,或采集自田地的玉米样品是否包含转基因玉米事件DBN9858,或玉米提取物,例如粗粉、粉或油是否包含转基因玉米事件DBN9858,从玉米植物组织样品或提取物提取的DNA可以通过使用引物对的核酸扩增方法以产生对于转基因玉米事件DBN9858的DNA的存在是诊断性的扩增子。所述引物对包括一个来源于植物基因组中与插入的外源DNA插入位点相邻的侧翼序列的第一引物,和来源于插入的外源DNA的第二引物。扩增子具有一定长度和序列,所述序列对所述转基因玉米事件DBN9858也是诊断性的。扩增子的长度范围可以是引物对的结合长度加上一个核苷酸碱基对,优选加上约五十个核苷酸碱基对,更优选加上约两百五十个核苷酸碱基对,最优选加上约四百五十个核苷酸碱基对或更多。As used herein, "amplified DNA" or "amplicon" refers to the product of nucleic acid amplification of a target nucleic acid sequence that is part of a nucleic acid template. For example, in order to determine whether corn plants were produced by sexual crossing containing the transgenic corn event DBN9858 of the present invention, or whether a corn sample collected from a field contained the transgenic corn event DBN9858, or whether a corn extract, such as meal, meal or oil contained For transgenic maize event DBN9858, DNA extracted from maize plant tissue samples or extracts can be subjected to nucleic acid amplification methods using primer pairs to generate amplicons that are diagnostic for the presence of DNA from transgenic maize event DBN9858. The pair of primers includes a first primer derived from a flanking sequence adjacent to the insertion site of the inserted foreign DNA in the plant genome, and a second primer derived from the inserted foreign DNA. The amplicon has a length and sequence that is also diagnostic for the transgenic maize event DBN9858. The length of the amplicon may range from the combined length of the primer pair plus one nucleotide base pair, preferably plus about fifty nucleotide base pairs, more preferably plus about two hundred and fifty nucleotides base pairs, most preferably plus about four hundred and fifty nucleotide base pairs or more.
可选的,引物对可以来源于插入DNA两侧的侧翼基因组序列,以产生包括整个插入核苷酸序列的扩增子。来源于植物基因组序列的引物对中的一个可以位于距插入DNA序列一定距离处,该距离的范围可以为一个核苷酸碱基对到约两万个核苷酸碱基对。术语“扩增子”的使用特别排除了在DNA热扩增反应中形成的引物二聚体。Alternatively, primer pairs can be derived from flanking genomic sequences flanking the insert DNA to generate amplicons that include the entire insert nucleotide sequence. One of the primer pairs derived from the plant genomic sequence can be located at a distance from the insert DNA sequence, which distance can range from one nucleotide base pair to about twenty thousand nucleotide base pairs. The use of the term "amplicon" specifically excludes primer-dimers formed in DNA thermal amplification reactions.
核酸扩增反应可以通过本领域已知的任何一种核酸扩增反应方法实现,包括聚合酶链式反应(PCR)。各种核酸扩增方法已是本领域技术人员所熟知的。PCR扩增方法已经发展到可扩增多达22kb的基因组DNA和多达42kb的噬菌体DNA。这些方法以及本领域的其他DNA扩增方法可以用于本发明。插入的外源DNA序列和来自转基因玉米事件DBN9858的侧翼DNA序列可以通过利用所提供的引物序列对转基因玉米事件DBN9858的基因组进行扩增,扩增后对PCR扩增子或克隆的DNA进行标准的DNA测序。Nucleic acid amplification reaction can be achieved by any nucleic acid amplification reaction method known in the art, including polymerase chain reaction (PCR). Various nucleic acid amplification methods are well known to those skilled in the art. PCR amplification methods have been developed to amplify up to 22 kb of genomic DNA and up to 42 kb of phage DNA. These methods, as well as other DNA amplification methods known in the art, can be used in the present invention. The inserted exogenous DNA sequence and the flanking DNA sequence from the transgenic maize event DBN9858 can be amplified from the genome of the transgenic maize event DBN9858 using the primer sequences provided, followed by standard analysis of PCR amplicons or cloned DNA. DNA sequencing.
基于DNA扩增方法的DNA检测试剂盒含有DNA引物分子,它们在适当的反应条件下特异性杂交到目标DNA上并扩增诊断性扩增子。试剂盒可提供基于琼脂糖凝胶的检测方法或者现有技术已知的检测诊断性扩增子的许多方法。含有与SEQ ID NO:3或SEQ ID NO:4的玉米基因组区的任何部分同源或互补的、以及与SEQ ID NO:5的转基因插入区的任何部分同源或互补的DNA引物的试剂盒是本发明所提供的。特别地鉴别在DNA扩增方法中有用的引物对是SEQ ID NO:8和SEQ ID NO:9,其扩增与转基因玉米事件DBN9858的5’转基因/基因组区的一部分同源的诊断性扩增子,其中扩增子包括SEQ ID NO:1。用作DNA引物的其他DNA分子可选自SEQ ID NO:5。DNA detection kits based on DNA amplification methods contain DNA primer molecules that, under appropriate reaction conditions, specifically hybridize to target DNA and amplify diagnostic amplicons. Kits may provide agarose gel-based detection methods or a number of methods known in the art to detect diagnostic amplicons. A kit containing DNA primers that are homologous or complementary to any part of the maize genomic region of SEQ ID NO:3 or SEQ ID NO:4, and to any part of the transgene insertion region of SEQ ID NO:5 provided by the present invention. A primer pair specifically identified as useful in DNA amplification methods is SEQ ID NO: 8 and SEQ ID NO: 9, which amplifies diagnostic amplification of homology to a portion of the 5' transgene/genomic region of transgenic maize event DBN9858 sub, wherein the amplicon comprises SEQ ID NO: 1. Other DNA molecules used as DNA primers may be selected from SEQ ID NO:5.
这些方法所产生的扩增子可以通过多种技术进行检测。其中一个方法是GeneticBit Analysis,该方法设计了一个跨越插入DNA序列和相邻的侧翼基因组DNA序列的DNA寡核苷酸链。将该寡核苷酸链固定在一个微孔板的微孔内, 在对目标区域进行PCR扩增后(在插入序列内和相邻的侧翼基因组序列中各使用一个引物),单链PCR产物可与固定的寡核苷酸链进行杂交,并且作为单碱基延伸反应的模板,该延伸反应使用了DNA聚合酶和为下一个预期的碱基特定标记的ddNTPs。可以通过荧光或ELISA类方法得到结果。信号代表了插入/侧翼序列的存在,其说明扩增、杂交和单碱基延伸反应是成功的。Amplicons generated by these methods can be detected by a variety of techniques. One such method is GeneticBit Analysis, which designs a DNA oligonucleotide strand spanning the insert DNA sequence and the adjacent flanking genomic DNA sequence. The oligonucleotide strands are immobilized in the microwells of a microplate, and after PCR amplification of the region of interest (using one primer each within the insert sequence and adjacent flanking genomic sequences), the single-stranded PCR product Can hybridize to immobilized oligonucleotide strands and serve as templates for single-base extension reactions using a DNA polymerase and ddNTPs specifically labeled for the next expected base. Results can be obtained by fluorescent or ELISA-like methods. The signal represents the presence of the insertion/flanking sequence, which indicates that the amplification, hybridization and single base extension reactions were successful.
另一种方法是Pyrosequencing(焦磷酸测序)技术。该方法设计了一个跨越插入DNA序列和相邻的基因组DNA结合部位的寡核苷酸链。将该寡核苷酸链和目标区域的单链PCR产物(在插入序列内和相邻的侧翼基因组序列中各使用一个引物)进行杂交,然后和DNA聚合酶、ATP、硫酰基酶、荧光素酶、三磷酸腺苷双磷酸酶、腺苷-5’-磷硫酸盐和萤光素一起进行温育。分别加入dNTPs,测量产生的光信号。光信号代表了插入/侧翼序列的存在,其说明扩增、杂交、和单碱基或多碱基延伸反应是成功的。Another method is Pyrosequencing (pyrosequencing) technology. This method designs an oligonucleotide strand that spans the insert DNA sequence and the adjacent genomic DNA binding site. This oligonucleotide strand is hybridized to a single-stranded PCR product of the region of interest (using one primer each within the insert and adjacent flanking genomic sequences), followed by DNA polymerase, ATP, sulfurylase, luciferin The enzyme, apyrase, adenosine-5'-phosphosulfate and luciferin are incubated together. Add dNTPs respectively, and measure the light signal generated. The light signal represents the presence of the insertion/flanking sequence, which indicates that the amplification, hybridization, and single-base or multi-base extension reactions were successful.
Chen等(基因组研究(Genome Res.)9:492-498,1999)描述的荧光偏振现象也是可以用于检测本发明扩增子的一种方法。使用这种方法需要设计一个跨越插入DNA序列和相邻的基因组DNA结合部位的寡核苷酸链。将该寡核苷酸链和目标区域的单链PCR产物(在插入序列内和相邻的侧翼基因组序列中各使用一个引物)进行杂交,然后和DNA聚合酶以及一种荧光标记的ddNTP一起进行温育。单碱基延伸会导致插入ddNTP。这种插入可以利用荧光仪测量其偏振的改变。偏振的改变代表了插入/侧翼序列的存在,其说明扩增、杂交和单碱基延伸反应是成功的。The fluorescence polarization phenomenon described by Chen et al. (Genome Res. 9:492-498, 1999) is also a method that can be used to detect amplicons of the invention. Using this method requires the design of an oligonucleotide strand that spans the insert DNA sequence and the adjacent genomic DNA binding site. The oligonucleotide strand is hybridized to a single-stranded PCR product of the region of interest (using one primer each within the insert and adjacent flanking genomic sequence) with DNA polymerase and a fluorescently labeled ddNTP Incubation. Single base extensions result in the insertion of ddNTPs. This insertion can be measured as a change in polarization using a fluorometer. A change in polarization represents the presence of insertion/flanking sequences, which indicates that the amplification, hybridization and single base extension reactions were successful.
Taqman被描述为一种检测和定量分析DNA序列存在的方法,该方法在制造商所提供的使用说明中有详细介绍。现简要举例说明如下,设计一个跨越插入DNA序列和相邻的基因组侧翼结合部位的FRET寡核苷酸探针。该FRET探针和PCR引物(在插入序列内和相邻的侧翼基因组序列中各使用一个引物)在热稳定聚合酶和dNTPs存在下进行循环反应。FRET探针的杂交导致FRET探针上荧光部分和淬灭部分的分裂以及荧光部分的释放。荧光信号的产生代表了插入/侧翼序列的存在,其说明扩增和杂交是成功的。Taqman is described as a method for the detection and quantification of the presence of DNA sequences, which is described in detail in the instructions for use provided by the manufacturer. As a brief example, design a FRET oligonucleotide probe spanning the insertion DNA sequence and the adjacent genomic flanking junction site as follows. The FRET probe and PCR primers (one each within the insert and adjacent flanking genomic sequences) are cycled in the presence of a thermostable polymerase and dNTPs. Hybridization of the FRET probe results in cleavage of the fluorescent and quencher moieties on the FRET probe and release of the fluorescent moiety. The generation of a fluorescent signal represents the presence of the insertion/flanking sequence, which indicates that the amplification and hybridization were successful.
基于杂交原理,用于检测来源于除草剂耐受性转基因玉米事件DBN9858的植物材料的适合技术还可以包括Southern印迹杂交、Northern印迹杂交和原位杂交。特别地,所述适合技术包括温育探针和样品,洗涤以移除未结合的探针和检测探针是否已经杂交。所述的检测方法取决于探针所附标记的类型,例如,通过X光片曝光和显影可以检测放射性标记的探针,或通过底物转化实现颜色变化可以检测酶标记的探针。Suitable techniques for detecting plant material derived from herbicide tolerant transgenic maize event DBN9858 may also include Southern blot hybridization, Northern blot hybridization, and in situ hybridization based on hybridization principles. In particular, such suitable techniques include incubating the probe and sample, washing to remove unbound probe and detecting whether the probe has hybridized. The detection method depends on the type of label attached to the probe, for example, radiolabeled probes can be detected by X-ray film exposure and visualization, or enzyme-labeled probes can be detected by substrate conversion to achieve a color change.
Tyangi等(自然生物技术(Nat.Biotech.)14:303-308,1996)介绍了分子标记在序列检测中的应用。简要说明如下,设计一个跨越插入DNA序列和相邻的基因组侧翼结合部位的FRET寡核苷酸探针。该FRET探针的独特结构导致其 含有二级结构,该二级结构能够在近距离内保持荧光部分和淬灭部分。该FRET探针和PCR引物(在插入序列内和相邻的侧翼基因组序列中各使用一个引物)在热稳定聚合酶和dNTPs存在下进行循环反应。经过成功的PCR扩增,FRET探针和目标序列的杂交导致探针二级结构的丧失,从而使荧光部分和淬灭部分在空间上发生分离,产生荧光信号。荧光信号的产生代表了插入/侧翼序列的存在,其说明扩增和杂交是成功的。Tyangi et al. (Nat. Biotech. 14:303-308, 1996) describe the use of molecular markers in sequence detection. Briefly described below, a FRET oligonucleotide probe is designed to span the insertion DNA sequence and the adjacent genomic flanking junction site. The unique structure of this FRET probe results in it containing a secondary structure that is capable of maintaining a fluorescent moiety and a quencher moiety in close proximity. The FRET probe and PCR primers (one each within the insert and adjacent flanking genomic sequences) are cycled in the presence of a thermostable polymerase and dNTPs. After successful PCR amplification, the hybridization of the FRET probe to the target sequence leads to the loss of the secondary structure of the probe, thereby spatially separating the fluorescent part and the quencher part, resulting in a fluorescent signal. The generation of a fluorescent signal represents the presence of the insertion/flanking sequence, which indicates that the amplification and hybridization were successful.
其他描述的方法,例如微流体(microfluidics)提供了分离和扩增DNA样品的方法和设备。光染料用于检测和测定特定的DNA分子。包含用于检测DNA分子的电子传感器或结合特定DNA分子的纳珠并因而可被检测的纳试管(nanotube)设备对于检测本发明的DNA分子是有用的。Other described methods such as microfluidics provide methods and devices for isolating and amplifying DNA samples. Optical dyes are used to detect and measure specific DNA molecules. Nanotube devices comprising electronic sensors for the detection of DNA molecules or nanobeads which bind specific DNA molecules and thus can be detected are useful for the detection of the DNA molecules of the present invention.
可以使用本发明所述的组合物和DNA检测领域描述的或已知的方法来开发DNA检测试剂盒。所述试剂盒有利于鉴定样品中是否存在转基因玉米事件DBN9858的DNA,还可以用于培育含有转基因玉米事件DBN9858的DNA的玉米植物。所述试剂盒可以含有DNA引物或探针,其同源于或互补于SEQ ID NO:1、2、3、4或5的至少一部分,或含有其他DNA引物或探针,其同源于或互补于DNA的转基因遗传元件中所含的DNA,这些DNA序列可以用于DNA扩增反应,或作为DNA杂交方法中的探针。在玉米基因组中含有的以及在图1和表1中说明的转基因插入序列与玉米基因组结合部位的DNA结构包含:位于转基因插入序列5’末端的玉米植物DBN9858侧翼基因组区域,来自农杆菌的左侧边界区域(LB)的一部分插入序列,第一个表达盒由含有增强子区域的串联重复的花椰菜花叶病毒35S启动子(pr35S),可操作地连接到链霉菌的草铵膦耐受性的膦丝菌素N-乙酰基转移酶(cPAT)上,并可操作地连接到花椰菜花叶病毒35S终止子(t35S)上而组成,第二个表达盒由由水稻肌动蛋白1启动子(prOsAct1),可操作连接到拟南芥EPSPS叶绿体转运肽的编码序列(spAtCTP2)上,可操作连接到土壤杆菌属CP4菌株的草甘膦耐受性的5-烯醇-丙酮酰莽草酸-3-磷酸合酶(cEPSPS)上,可操作连接到胭脂碱合酶的转录终止子(tNos)上而组成,来自农杆菌的右侧边界区域(RB)的一部分插入序列,以及位于转基因插入序列3’末端的玉米植物DBN9858侧翼基因组区域(SEQ IDNO:5)。在DNA扩增方法中,作为引物的DNA分子可以是来源于玉米植物DBN9858中转基因插入序列的任何部分,也可以是来源于转基因玉米事件DBN9858中侧翼玉米基因组的DNA区域的任何部分。DNA detection kits can be developed using the compositions described herein and methods described or known in the field of DNA detection. The kit facilitates the identification of the presence of DNA from transgenic maize event DBN9858 in a sample, and can also be used to breed maize plants containing DNA from transgenic maize event DBN9858. The kit may contain DNA primers or probes homologous to or complementary to at least a portion of SEQ ID NO: 1, 2, 3, 4 or 5, or other DNA primers or probes homologous to or complementary to at least a portion of SEQ ID NO: 1, 2, 3, 4 or 5 The DNA contained in the transgenic genetic element is complementary to the DNA, which DNA sequences can be used in DNA amplification reactions, or as probes in DNA hybridization methods. The DNA structure of the junction of the transgene insert sequence and the maize genome contained in the maize genome and illustrated in Figure 1 and Table 1 contains: the flanking genomic region of maize plant DBN9858 located at the 5' end of the transgene insert sequence, from the left side of Agrobacterium Part of the insert sequence in the border region (LB), the first expression cassette consists of a tandem repeat of the cauliflower mosaic virus 35S promoter (pr35S) containing an enhancer region, operably linked to the glufosinate-resistant Streptomyces phosphinothricin N-acetyltransferase (cPAT) and is operably linked to the cauliflower mosaic virus 35S terminator (t35S), the second expression cassette consists of the rice actin 1 promoter ( prOsAct1), operably linked to the coding sequence for the Arabidopsis EPSPS chloroplast transit peptide (spAtCTP2), operably linked to the glyphosate-tolerant 5-enol-pyruvylshikimate-3 of the Agrobacterium CP4 strain - Phosphate synthase (cEPSPS), consisting of operably linked to the transcription terminator (tNos) of nopaline synthase, a part of the insert sequence from the right border region (RB) of Agrobacterium, and the insert sequence located at transgene insert 3 Maize plant DBN9858 flanking genomic region at the ' end (SEQ ID NO:5). In the DNA amplification method, the DNA molecules used as primers can be any part of the transgene insert sequence derived from the maize plant DBN9858, or any part of the DNA region flanking the maize genome in the transgenic maize event DBN9858.
转基因玉米事件DBN9858可以与其他转基因玉米品种组合,例如除草剂耐受性(如2,4-D、麦草畏等)的玉米,或携带其他抗虫基因(如Cry1Ab、Vip3A等)的转基因玉米品种。所有这些不同转基因事件的各种组合,与本发明的转基因玉米事件DBN9858一起育种,可以提供抗多种虫害并耐受多种除草剂的改良杂种转基因玉米品种。这些品种相比于非转基因品种和单性状的转基因品种 可以表现出产量提升等更优异的特征。GM maize event DBN9858 can be combined with other GM maize varieties, such as herbicide tolerant (such as 2,4-D, dicamba, etc.), or GM maize varieties carrying other insect resistance genes (such as Cry1Ab, Vip3A, etc.) . Various combinations of all these different transgenic events, bred together with the transgenic maize event DBN9858 of the present invention, can provide improved hybrid transgenic maize varieties resistant to various insect pests and tolerant to various herbicides. Compared with non-transgenic varieties and single-trait transgenic varieties, these varieties can show more excellent characteristics such as yield improvement.
本发明提供了一种用于检测除草剂耐受性玉米植物DBN9858的核酸序列及其检测方法,转基因玉米事件DBN9858耐受含草甘膦和/或草铵膦的农业除草剂的植物毒性作用。该双重性状的玉米植株表达土壤杆菌属菌株CP4的草甘膦抗性的5-烯醇丙酮酰莽草酸-3-磷酸合酶(EPSPS)蛋白,其赋予植物对草甘膦的耐受性,并表达链霉菌的草铵膦抗性的膦丝菌素N-乙酰基转移酶(PAT)蛋白,其赋予植物对草铵膦的耐受性。双重性状玉米具有如下优点:1)施加含草甘膦的农业除草剂给玉米作物用于广谱杂草控制的能力;2)草铵膦耐受性性状组合使用草铵膦除草剂(与草甘膦除草剂混合或交替使用)可以作为一种有效管理草甘膦抗性杂草的非选择性手段;3)除草剂耐受性转基因玉米作为非抗虫转基因玉米,与转基因抗虫玉米以一定比例一并种植,可以延缓昆虫/害虫产生抗性;4)玉米产量没有降低。此外,编码草甘膦耐受性和草铵膦耐受性性状的基因连锁在同一DNA区段上,并且存在于转基因玉米事件DBN9858基因组的单一基因座上,这一点提供了增强的育种效率并使得能够用分子标记来追踪繁殖群体及其子代中的转基因插入片段。同时本发明检测方法中SEQ IDNO:1或其互补序列、SEQ ID NO:2或其互补序列、SEQ ID NO:6或其互补序列、或者SEQ IDNO:7或其互补序列可以作为DNA引物或探针以产生诊断为转基因玉米事件DBN9858或其后代的扩增产物,且可以快速、准确、稳定的鉴定出来源于转基因玉米事件DBN9858的植物材料的存在。The invention provides a nucleic acid sequence for detecting herbicide-tolerant corn plant DBN9858 and a detection method thereof. The transgenic corn event DBN9858 is tolerant to the phytotoxic effect of agricultural herbicides containing glyphosate and/or glufosinate-ammonium. The dual-trait maize plants express the glyphosate-resistant 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) protein of Agrobacterium strain CP4, which confers tolerance to glyphosate in plants, And express the Streptomyces glufosinate-resistant phosphinothricin N-acetyltransferase (PAT) protein, which confers plant tolerance to glufosinate. Dual-trait corn has the following advantages: 1) the ability to apply glyphosate-containing agricultural herbicides to corn crops for broad-spectrum weed control; 2) the use of glufosinate-ammonium herbicides in combination with Glyphosate herbicide mixed or alternate use) can be used as a non-selective means to effectively manage glyphosate-resistant weeds; 3) herbicide-tolerant transgenic corn as non-insect-resistant transgenic corn, and transgenic insect-resistant corn and other Planting together in a certain proportion can delay the resistance of insects/pests; 4) The yield of corn is not reduced. In addition, genes encoding glyphosate tolerance and glufosinate-ammonium tolerance traits are linked on the same DNA segment and present at a single locus in the genome of transgenic maize event DBN9858, which provides enhanced breeding efficiency and Enables molecular markers to track transgene insertions in breeding populations and their progeny. Meanwhile, in the detection method of the present invention, SEQ ID NO: 1 or its complementary sequence, SEQ ID NO: 2 or its complementary sequence, SEQ ID NO: 6 or its complementary sequence, or SEQ ID NO: 7 or its complementary sequence can be used as DNA primer or probe The aim is to produce an amplification product that is diagnosed as the transgenic maize event DBN9858 or its progeny, and can quickly, accurately and stably identify the existence of the plant material derived from the transgenic maize event DBN9858.
序列简述sequence description
SEQ ID NO:1转基因玉米事件DBN9858中5’转基因片段的插入位点和玉米基因组DNA的每一侧的11个核苷酸;Insertion site of the 5' transgene fragment in SEQ ID NO: 1 transgenic maize event DBN9858 and 11 nucleotides on each side of maize genomic DNA;
SEQ ID NO:2转基因玉米事件DBN9858中3’转基因片段的插入位点和玉米基因组DNA的每一侧的11个核苷酸;Insertion site of the 3' transgene fragment in SEQ ID NO: 2 transgenic maize event DBN9858 and 11 nucleotides on each side of maize genomic DNA;
SEQ ID NO:3转基因玉米事件DBN9858中在插入序列的5’末端位于插入接合部位附近的一个长度为1301个核苷酸的序列;A sequence of 1301 nucleotides in length near the insertion junction at the 5' end of the insertion sequence in SEQ ID NO: 3 transgenic maize event DBN9858;
SEQ ID NO:4转基因玉米事件DBN9858中在插入序列的3’末端位于插入接合部位附近的一个长度为1310个核苷酸的序列;A sequence of 1310 nucleotides in length near the insertion junction at the 3' end of the insertion sequence in SEQ ID NO: 4 transgenic maize event DBN9858;
SEQ ID NO:5整个T-DNA序列、5’和3’的侧翼玉米基因组序列;SEQ ID NO:5 whole T-DNA sequence, 5' and 3' flanking maize genome sequence;
SEQ ID NO:6位于SEQ ID NO:3内部的序列,跨越了DBN10006构建体DNA序列和pr35S启动子序列;SEQ ID NO:6 is located at the sequence within SEQ ID NO:3, spanning the DBN10006 construct DNA sequence and the pr35S promoter sequence;
SEQ ID NO:7位于SEQ ID NO:4内部的序列,跨越了tNos终止子序列和DBN10006构建体DNA序列;SEQ ID NO:7 is located at the sequence within SEQ ID NO:4, spanning the tNos terminator sequence and the DBN10006 construct DNA sequence;
SEQ ID NO:8扩增SEQ ID NO:3的第一引物;SEQ ID NO:8 amplifies the first primer of SEQ ID NO:3;
SEQ ID NO:9扩增SEQ ID NO:3的第二引物;SEQ ID NO:9 amplifies the second primer of SEQ ID NO:3;
SEQ ID NO:10扩增SEQ ID NO:4的第一引物;SEQ ID NO:10 amplifies the first primer of SEQ ID NO:4;
SEQ ID NO:11扩增SEQ ID NO:4的第二引物;SEQ ID NO:11 amplifies the second primer of SEQ ID NO:4;
SEQ ID NO:125’侧翼基因组序列上的引物;Primer on SEQ ID NO:12 5' flanking genomic sequence;
SEQ ID NO:13与SEQ ID NO:12配对的位于T-DNA上的引物;Primers on T-DNA paired with SEQ ID NO:13 and SEQ ID NO:12;
SEQ ID NO:143’侧翼基因组序列上的引物,其与SEQ ID NO:12配对可以检测转基因是纯合子或是杂合子;The primer on the genomic sequence of SEQ ID NO:14 3' flanks, and its pairing with SEQ ID NO:12 can detect whether the transgene is homozygous or heterozygous;
SEQ ID NO:15与SEQ ID NO:14配对的位于T-DNA上的引物;Primers on T-DNA paired with SEQ ID NO:15 and SEQ ID NO:14;
SEQ ID NO:16Taqman检测EPSPS的引物1;SEQ ID NO:16 Taqman detects primer 1 for EPSPS;
SEQ ID NO:17Taqman检测EPSPS的引物2;SEQ ID NO:17 Taqman detects the primer 2 of EPSPS;
SEQ ID NO:18Taqman检测EPSPS的探针1;SEQ ID NO:18 Taqman probe 1 for detecting EPSPS;
SEQ ID NO:19Taqman检测PAT的引物3;SEQ ID NO:19 Taqman detects primer 3 of PAT;
SEQ ID NO:20Taqman检测PAT的引物4;SEQ ID NO:20 Taqman detects primer 4 of PAT;
SEQ ID NO:21Taqman检测PAT的探针2;SEQ ID NO:21 Taqman detects probe 2 of PAT;
SEQ ID NO:22玉米内源基因Ubiquitin的第一引物;SEQ ID NO:22 The first primer of endogenous gene Ubiquitin in maize;
SEQ ID NO:23玉米内源基因Ubiquitin的第二引物;The second primer of SEQ ID NO:23 maize endogenous gene Ubiquitin;
SEQ ID NO:24Southern杂交检测中PAT的探针;The probe of PAT in SEQ ID NO:24 Southern hybridization detection;
SEQ ID NO:25Southern杂交检测中EPSPS的探针;The probe of EPSPS in SEQ ID NO:25 Southern hybridization detection;
SEQ ID NO:26位于T-DNA上的引物,与SEQ ID NO:13方向一致;The primer of SEQ ID NO:26 located on the T-DNA is consistent with the direction of SEQ ID NO:13;
SEQ ID NO:27位于T-DNA上的引物,与SEQ ID NO:13方向相反,用作获得侧翼序列;The primer of SEQ ID NO:27 located on the T-DNA is opposite to the direction of SEQ ID NO:13, and is used to obtain flanking sequences;
SEQ ID NO:28位于T-DNA上的引物,与SEQ ID NO:13方向相反,用作获得侧翼序列;The primer of SEQ ID NO:28 located on the T-DNA is opposite to the direction of SEQ ID NO:13, and is used to obtain flanking sequences;
SEQ ID NO:29位于T-DNA上的引物,与SEQ ID NO:15方向一致;The primer of SEQ ID NO: 29 located on the T-DNA is consistent with the direction of SEQ ID NO: 15;
SEQ ID NO:30位于T-DNA上的引物,与SEQ ID NO:15方向相反,用作获得侧翼序列;The primer of SEQ ID NO:30 located on the T-DNA is opposite to the direction of SEQ ID NO:15, and is used to obtain flanking sequences;
SEQ ID NO:31位于T-DNA上的引物,与SEQ ID NO:15方向相反,用作获得侧翼序列。The primer of SEQ ID NO: 31 located on the T-DNA, in the opposite direction to that of SEQ ID NO: 15, was used to obtain flanking sequences.
下面通过附图和实施例,对本发明的技术方案做进一步的详细描述。The technical solutions of the present invention will be described in further detail below with reference to the accompanying drawings and embodiments.
附图说明Description of drawings
图1为本发明用于检测除草剂耐受性玉米植物DBN9858的核酸序列及其检测方法的转基因插入序列与玉米基因组结合部位的结构示意图;Fig. 1 is a schematic diagram of the structure of the transgene insertion sequence and the corn genome binding site used to detect the nucleic acid sequence of the herbicide-tolerant corn plant DBN9858 and the detection method of the present invention;
图2为本发明用于检测除草剂耐受性玉米植物DBN9858的核酸序列及其检测方法的重组表达载体DBN10006的结构示意图。Fig. 2 is a schematic structural diagram of the recombinant expression vector DBN10006 used for detecting the nucleic acid sequence of the herbicide-tolerant corn plant DBN9858 and the detection method of the present invention.
具体实施方式Detailed ways
下面通过具体实施例进一步说明本发明用于检测除草剂耐受性玉米植物DBN9858的核酸序列及其检测方法的技术方案。The technical scheme for detecting the nucleic acid sequence of the herbicide-tolerant corn plant DBN9858 and the detection method thereof of the present invention is further illustrated by specific examples below.
第一实施例、克隆与转化The first embodiment, cloning and transformation
1.1、载体克隆1.1. Vector cloning
使用标准的基因克隆技术构建重组表达载体DBN10006(如图2所示)。所述载体DBN10006包含两个串联的转基因表达盒,第一个表达盒由含有增强子区域的串联重复的花椰菜花叶病毒35S启动子(pr35S),可操作地连接到链霉菌的草铵膦耐受性的膦丝菌素N-乙酰基转移酶(cPAT)上,并可操作地连接到花椰菜花叶病毒35S终止子(t35S)上而组成;第二个表达盒由水稻肌动蛋白1启动子(prOsAct1),可操作连接到拟南芥EPSPS叶绿体转运肽的编码序列(spAtCTP2)上,可操作连接到土壤杆菌属CP4菌株的草甘膦耐受性的5-烯醇-丙酮酰莽草酸-3-磷酸合酶(cEPSPS)上,可操作连接到胭脂碱合酶的转录终止子(tNos)上而组成。The recombinant expression vector DBN10006 (as shown in Figure 2) was constructed using standard gene cloning techniques. The vector DBN10006 contains two tandem transgene expression cassettes, the first of which consists of a tandem repeat of the cauliflower mosaic virus 35S promoter (pr35S) containing an enhancer region, operably linked to the glufosinate-resistant gene of Streptomyces. Competent phosphinothricin N-acetyltransferase (cPAT) and operably linked to the cauliflower mosaic virus 35S terminator (t35S); the second expression cassette is initiated by rice actin 1 (prOsAct1), operably linked to the coding sequence of the Arabidopsis EPSPS chloroplast transit peptide (spAtCTP2), operably linked to the glyphosate-tolerant 5-enol-pyruvylshikimic acid of the Agrobacterium sp. CP4 strain -3-phosphate synthase (cEPSPS), which is operably linked to the transcription terminator (tNos) of nopaline synthase.
将所述载体DBN10006用液氮法转化到农杆菌LBA4404(Invitrgen,Chicago,USA;Cat.No:18313-015)中,并且以5-烯醇丙酮酰莽草酸-3-磷酸合酶(EPSPS)为选择标记对转化细胞进行筛选。The vector DBN10006 was transformed into Agrobacterium LBA4404 (Invitrgen, Chicago, USA; Cat.No: 18313-015) with liquid nitrogen method, and 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) Transformed cells are screened for a selectable marker.
1.2、植物转化1.2. Plant transformation
采用常规的农杆菌侵染法进行转化,将无菌培养的玉米幼胚与本实施例1.1中所述的农杆菌共培养,以将构建的重组表达载体DBN10006中的T-DNA转入到玉米染色体组中,以产生转基因玉米事件DBN9858。The conventional Agrobacterium infection method was used for transformation, and the aseptically cultured corn immature embryos were co-cultured with the Agrobacterium described in Example 1.1 to transfer the T-DNA in the constructed recombinant expression vector DBN10006 into the corn genome to generate transgenic maize event DBN9858.
对于农杆菌介导的玉米转化,简要地,从玉米中分离未成熟的幼胚,用农杆菌悬浮液接触幼胚,其中农杆菌能够将EPSPS基因的核苷酸序列和PAT基因的核苷酸序列传递至幼胚之一的至少一个细胞(步骤1:侵染步骤),在此步骤中,幼胚优选地浸入农杆菌悬浮液(OD660=0.4-0.6,侵染培养基(MS盐4.3g/L、MS维他命、干酪素300mg/L、蔗糖68.5g/L、葡萄糖36g/L、乙酰丁香酮(AS)40mg/L、2,4-二氯苯氧乙酸(2,4-D)1mg/L,pH 5.3))中以启动接种。幼胚与农杆菌共培养一段时期(3天)(步骤2:共培养步骤)。优选地,幼胚在侵染步骤后在固体培养基(MS盐4.3g/L、MS维他命、干酪素300mg/L、蔗糖20g/L、葡萄糖10g/L、乙酰丁香酮(AS)100mg/L、2,4-二氯苯氧乙酸(2,4-D)1mg/L、琼脂8g/L,pH 5.8)上培养。在此共培养阶段后,可以有一个选择性的“恢复”步骤。在“恢复”步骤中,恢复培养基(MS盐4.3g/L、MS维他命、干酪素300mg/L、蔗糖30g/L、2,4-二氯苯氧乙酸(2,4-D)1mg/L、植物凝胶3g/L,pH5.8)中至少存在一种己知抑制农杆菌生长的抗生素(头孢霉素),不添加植物转化体的选择剂(步骤3:恢复步骤)。优选地,幼胚在有抗生素但没有选择剂的固体培养基上培养,以消除农杆菌并为侵染细胞提供恢复期。接着,接种的幼胚在含选择剂(草甘膦)的培养基上培养并选择生长着的转化愈伤组织(步骤4:选择步骤)。优选地,幼胚在有选择剂的筛选固体培养基(MS盐 4.3g/L、MS维他命、干酪素300mg/L、蔗糖30g/L、N-(膦羧甲基)甘氨酸0.25mol/L、2,4-二氯苯氧乙酸(2,4-D)1mg/L、植物凝胶3g/L,pH 5.8)上培养,导致转化的细胞选择性生长。然后,愈伤组织再生成植物(步骤5:再生步骤),优选地,在含选择剂的培养基上生长的愈伤组织在固体培养基(MS分化培养基和MS生根培养基)上培养以再生植物。For Agrobacterium-mediated transformation of maize, briefly, immature immature embryos are isolated from maize and contacted with a suspension of Agrobacterium capable of converting the nucleotide sequence of the EPSPS gene and the nucleotide sequence of the PAT gene The sequence is transferred to at least one cell of one of the immature embryos (step 1: infection step), during which the immature embryos are preferably immersed in an Agrobacterium suspension (OD660=0.4-0.6, infection medium (MS salts 4.3 g /L, MS vitamins, casein 300mg/L, sucrose 68.5g/L, glucose 36g/L, acetosyringone (AS) 40mg/L, 2,4-dichlorophenoxyacetic acid (2,4-D) 1mg /L, pH 5.3)) to initiate inoculation. The immature embryos were co-cultured with Agrobacterium for a period of time (3 days) (step 2: co-cultivation step). Preferably, immature embryos are cultured on solid medium (MS salts 4.3g/L, MS vitamins, casein 300mg/L, sucrose 20g/L, glucose 10g/L, acetosyringone (AS) 100mg/L after the infection step. , 2,4-dichlorophenoxyacetic acid (2,4-D) 1mg/L, agar 8g/L, pH 5.8). After this co-cultivation phase, there can be an optional "recovery" step. In the "recovery" step, recovery medium (MS salts 4.3g/L, MS vitamins, casein 300mg/L, sucrose 30g/L, 2,4-dichlorophenoxyacetic acid (2,4-D) 1mg/ L. At least one antibiotic (cephalosporin) known to inhibit the growth of Agrobacterium exists in the plant gel (3 g/L, pH 5.8), and no selection agent for plant transformants is added (step 3: recovery step). Preferably, immature embryos are cultured on solid medium with antibiotics but no selection agent to eliminate Agrobacterium and provide a recovery period for infected cells. Next, the inoculated immature embryos are cultured on a medium containing a selection agent (glyphosate) and the growing transformed calli are selected (step 4: selection step). Preferably, the immature embryos are cultured on a selective solid medium (MS salt 4.3g/L, MS vitamin, casein 300mg/L, sucrose 30g/L, N-(phosphonomethyl)glycine 0.25mol/L, 2,4-dichlorophenoxyacetic acid (2,4-D) 1mg/L, phytogel 3g/L, pH 5.8), resulting in selective growth of transformed cells. Then, the callus regenerates into plants (step 5: regeneration step), preferably, the callus grown on the medium containing the selection agent is cultured on solid medium (MS differentiation medium and MS rooting medium) to regenerated plants.
筛选得到的抗性愈伤组织转移到所述MS分化培养基(MS盐4.3g/L、MS维他命、干酪素300mg/L、蔗糖30g/L、6-苄基腺嘌呤2mg/L、N-(膦羧甲基)甘氨酸0.125mol/L、植物凝胶3g/L,pH 5.8)上,25℃下培养分化。分化出来的小苗转移到所述MS生根培养基(MS盐2.15g/L、MS维他命、干酪素300mg/L、蔗糖30g/L、吲哚-3-乙酸1mg/L、琼脂8g/L,pH 5.8)上,25℃下培养至约10cm高,移至温室培养至结实。在温室中,每天于28℃下培养16小时,再于20℃下培养8小时。The resistant callus obtained by screening was transferred to the MS differentiation medium (MS salt 4.3g/L, MS vitamin, casein 300mg/L, sucrose 30g/L, 6-benzyl adenine 2mg/L, N- (phosphonomethyl)glycine 0.125mol/L, phytogel 3g/L, pH 5.8), cultured and differentiated at 25°C. Differentiated seedlings were transferred to the MS rooting medium (MS salt 2.15g/L, MS vitamins, casein 300mg/L, sucrose 30g/L, indole-3-acetic acid 1mg/L, agar 8g/L, pH 5.8) above, cultivate at 25°C to a height of about 10cm, and move to the greenhouse to cultivate until firm. In the greenhouse, culture was carried out at 28°C for 16 hours and at 20°C for 8 hours every day.
1.3、转基因事件的鉴定和筛选1.3. Identification and screening of transgenic events
一共产生了332个独立转基因T0植株。A total of 332 independent transgenic T0 plants were generated.
通过TaqManTM分析(参见第二实施例)检测再生的转基因玉米植株是否存在EPSPS和PAT基因,并表征耐受草甘膦和草铵膦品系的拷贝数。通过筛选,选定了事件DBN9858是优异的,其具有单拷贝转基因、良好的草甘膦除草剂耐受性、草铵膦除草剂耐受性和农艺性状的表现(参见第五实施例)。Regenerated transgenic maize plants were tested for the presence of EPSPS and PAT genes by TaqManTM analysis (see second example), and the copy number of glyphosate and glufosinate-tolerant lines was characterized. Through screening, event DBN9858 was selected to be superior with a single copy transgene, good glyphosate herbicide tolerance, glufosinate herbicide tolerance and performance of agronomic traits (see fifth example).
第二实施例、用TaqMan进行转基因玉米事件DBN9858检测The second embodiment, detection of transgenic corn event DBN9858 with TaqMan
取转基因玉米事件DBN9858的叶片约100mg作为样品,用Qiagen的DNeasy PlantMaxi Kit提取其基因组DNA,通过Taqman探针荧光定量PCR方法检测EPSPS基因和PAT基因的拷贝数。同时以野生型玉米植株作为对照,按照上述方法进行检测分析。实验设3次重复,取平均值。About 100 mg of leaves of transgenic maize event DBN9858 were taken as a sample, and its genomic DNA was extracted with Qiagen's DNeasy PlantMaxi Kit, and the copy numbers of EPSPS gene and PAT gene were detected by Taqman probe fluorescence quantitative PCR method. At the same time, wild-type maize plants were used as a control, and detection and analysis were carried out according to the above method. The experiment was repeated 3 times, and the average value was taken.
具体方法如下:The specific method is as follows:
步骤11、取转基因玉米事件DBN9858的叶片100mg,在研钵中用液氮研成匀浆,每个样品取3个重复;Step 11, take 100 mg of leaves of the transgenic corn event DBN9858, grind it into a homogenate with liquid nitrogen in a mortar, and take 3 replicates for each sample;
步骤12、使用Qiagen的DNeasy Plant Mini Kit提取上述样品的基因组DNA,具体方法参考其产品说明书;Step 12, using the DNeasy Plant Mini Kit of Qiagen to extract the genomic DNA of the above sample, the specific method refers to its product manual;
步骤13、用NanoDrop 2000(Thermo Scientific)测定上述样品的基因组DNA浓度;Step 13, measure the genomic DNA concentration of above-mentioned sample with NanoDrop 2000 (Thermo Scientific);
步骤14、调整上述样品的基因组DNA浓度至同一浓度值,所述浓度值的范围为80-100ng/μl;Step 14, adjusting the genomic DNA concentration of the above samples to the same concentration value, the concentration value ranges from 80-100ng/μl;
步骤15、采用Taqman探针荧光定量PCR方法鉴定样品的拷贝数,以经过鉴定已知拷贝数的样品作为标准品,以野生型玉米植株的样品作为对照,每个样品3个重复,取其平均值;荧光定量PCR引物和探针序列分别是:Step 15, using the Taqman probe fluorescent quantitative PCR method to identify the copy number of the sample, using the sample with known copy number after identification as a standard, and using the sample of the wild-type corn plant as a control, each sample was repeated 3 times, and the average Value; Fluorescence quantitative PCR primer and probe sequences are respectively:
以下引物和探针用来检测EPSPS基因序列:The following primers and probes were used to detect the EPSPS gene sequence:
引物1:CTGGAAGGCGAGGACGTCATCAATA如序列表中SEQ ID NO:16所示;Primer 1: CTGGAAGGCGAGGACGTCATCAATA as shown in SEQ ID NO: 16 in the sequence listing;
引物2:TGGCGGCATTGCCGAAATCGAG如序列表中SEQ ID NO:17所示;Primer 2: TGGCGGCATTGCCGAAATCGAG as shown in SEQ ID NO: 17 in the sequence listing;
探针1:ATGCAGGCGATGGGCGCCCGCATCCGTA如序列表中SEQ ID NO:18所示;Probe 1: ATGCAGGCGATGGGCGCCCGCATCCGTA as shown in SEQ ID NO: 18 in the sequence listing;
以下引物和探针用来检测PAT基因序列:The following primers and probes were used to detect the PAT gene sequence:
引物3:CAGTTGAGATTAGGCCAGCTACAG如序列表中SEQ ID NO:19所示;Primer 3: CAGTTGAGATTAGGCCAGCTACAG as shown in SEQ ID NO: 19 in the sequence listing;
引物4:TTCACTGTAGACGTCTCAATGTAATGG如序列表中SEQ ID NO:20所示;Primer 4: TTCACTGTAGACGTCTCAATGTAATGG as shown in SEQ ID NO: 20 in the sequence listing;
探针2:CAGCTGATATGGCCGCGGTTTGTG如序列表中SEQ ID NO:21所示;Probe 2: CAGCTGATATGGCCGCGGTTTGTG as shown in SEQ ID NO: 21 in the sequence listing;
PCR反应体系为:The PCR reaction system is:
所述50×引物/探针混合物包含1mM浓度的每种引物各45μL,100μM浓度的探针50μL和860μlL1×TE缓冲液,并且在4℃,贮藏在琥珀试管中。The 50X primer/probe mix contained 45 μL of each primer at a concentration of 1 mM, 50 μL of a probe at a concentration of 100 μM, and 860 μL of 1×TE buffer, and was stored at 4° C. in amber tubes.
PCR反应条件为:The PCR reaction conditions are:
利用SDS2.3软件(Applied Biosystems)分析数据,获得单拷贝的转基因玉米事件DBN9858。The data was analyzed using SDS2.3 software (Applied Biosystems), and a single copy of the transgenic maize event DBN9858 was obtained.
第三实施例、转基因玉米事件DBN9858检测The third embodiment, detection of transgenic corn event DBN9858
3.1、基因组DNA提取3.1. Genomic DNA extraction
DNA提取按照常规采用的CTAB(十六烷基三甲基溴化铵)法:取2克幼嫩的转基因玉米事件DBN9858的叶片在液氮中研磨成粉后,加入0.5mL于温度65℃预热的DNA提取CTABBuffer(20g/L CTAB,1.4M NaCl,100mM Tris-HCl,20mM EDTA(乙二胺四乙酸),用NaOH调pH至8.0),充分混匀后,于温度65℃抽提90分钟;加入0.5倍体积苯酚,0.5倍体积氯仿,颠倒混匀;12000rpm(每分钟转数)转速下离心10分钟;吸取上清液,加入2倍体积无水乙醇,轻柔晃动离心管,于温度4℃静置30分钟;12000rpm转速下再 离心10分钟;收集DNA到管底;弃上清液,用1mL质量浓度为70%的乙醇,洗涤沉淀;12000rpm转速下离心5分钟;真空抽干或在超净台吹干;DNA沉淀溶解于适量的TE缓冲液(10mM Tris-HCl,1mM EDTA,pH 8.0)中,保存在温度-20℃条件下。The DNA was extracted according to the conventional CTAB (cetyltrimethylammonium bromide) method: take 2 grams of tender leaves of the transgenic corn event DBN9858 and grind them into powder in liquid nitrogen, add 0.5mL and pre-cook at 65°C. Hot DNA extraction CTABBuffer (20g/L CTAB, 1.4M NaCl, 100mM Tris-HCl, 20mM EDTA (ethylenediaminetetraacetic acid), adjust the pH to 8.0 with NaOH), mix thoroughly, and extract at 65°C for 90 minutes; add 0.5 times the volume of phenol, 0.5 times the volume of chloroform, mix upside down; centrifuge at 12000rpm (revolutions per minute) for 10 minutes; absorb the supernatant, add 2 times the volume of absolute ethanol, gently shake the centrifuge tube, Let stand at 4°C for 30 minutes; centrifuge at 12,000 rpm for 10 minutes; collect DNA to the bottom of the tube; discard the supernatant and wash the precipitate with 1 mL of 70% ethanol; centrifuge at 12,000 rpm for 5 minutes; vacuum dry or Blow dry in ultra-clean bench; DNA precipitate was dissolved in appropriate amount of TE buffer (10mM Tris-HCl, 1mM EDTA, pH 8.0) and stored at -20°C.
3.2、侧翼DNA序列的分析3.2. Analysis of flanking DNA sequences
对上述提取的DNA样品进行浓度测定,使待测样品的浓度位于80-100ng/μL之间。用选择出的限制性内切酶BamH I、Xma I、Kpn I、Sac II(5’端分析)和Spe I、Pst I、Eco57I(3’端分析)分别酶切基因组DNA。每个酶切体系中加入26.5μL基因组DNA、0.5μL上述选择出的限制性内切酶、Concentration determination is performed on the extracted DNA sample, so that the concentration of the sample to be tested is between 80-100 ng/μL. Genomic DNA was digested with the selected restriction enzymes BamH I, Xma I, Kpn I, Sac II (5' end analysis) and Spe I, Pst I, Eco57I (3' end analysis). Add 26.5 μL of genomic DNA, 0.5 μL of the restriction enzymes selected above, and
以及3μL酶切缓冲液,酶切1小时。待酶切结束后,向酶切体系中加入70μL无水乙醇,冰浴30分钟,转速12000rpm离心7分钟,弃上清,吹干,之后加入8.5μL双蒸水(dd H2O)、1μL 10X T4Buffer以及0.5μL T4连接酶在温度4℃连接过夜。用一系列嵌套引物进行PCR扩增分离5’和3’转基因/基因组DNA。具体的,分离5’转基因/基因组DNA引物组合包括SEQ IDNO:13、SEQ ID NO:26作为第一引物,SEQ ID NO:27、SEQ ID NO:28作为第二引物,SEQ IDNO:13作为测序引物。分离3’转基因/基因组DNA引物组合包括SEQ ID NO:15、SEQ ID NO:29作为第一引物,SEQ ID NO:30、SEQ ID NO:31作为第二引物,SEQ ID NO:15作为测序引物,PCR反应条件如表3所示。And 3 μL enzyme digestion buffer, enzyme digestion for 1 hour. After enzyme digestion, add 70 μL of absolute ethanol to the enzyme digestion system, ice bath for 30 minutes, centrifuge at 12000 rpm for 7 minutes, discard the supernatant, blow dry, then add 8.5 μL double distilled water (dd H2O), 1 μL 10X T4Buffer And 0.5 μL T4 ligase was ligated overnight at a temperature of 4°C. PCR amplification using a series of nested primers isolates 5' and 3' transgene/genomic DNA. Specifically, the primer combination for separating 5' transgene/genome DNA includes SEQ ID NO: 13, SEQ ID NO: 26 as the first primer, SEQ ID NO: 27, SEQ ID NO: 28 as the second primer, and SEQ ID NO: 13 as the sequencing primers. Isolation 3' transgene/genomic DNA primer set includes SEQ ID NO:15, SEQ ID NO:29 as first primer, SEQ ID NO:30, SEQ ID NO:31 as second primer, SEQ ID NO:15 as sequencing primer , PCR reaction conditions are shown in Table 3.
所获得的扩增子在2.0%琼脂糖凝胶上电泳以分离PCR反应物,随后使用QIAquickGel提取试剂盒(目录#_28704,Qiagen Inc.,Valencia,CA)从琼脂糖基质分离目的片段。然后对纯化的PCR产物测序(例如,ABI PrismTM 377,PE Biosystems,Foster City,CA)并分析(例如,DNASTAR序列分析软件,DNASTAR Inc.,Madison,WI)。The obtained amplicons were electrophoresed on a 2.0% agarose gel to separate the PCR reactions, and then the fragments of interest were isolated from the agarose matrix using the QIAquickGel extraction kit (catalog #_28704, Qiagen Inc., Valencia, CA). Purified PCR products are then sequenced (eg, ABI Prism™ 377, PE Biosystems, Foster City, CA) and analyzed (eg, DNASTAR Sequence Analysis Software, DNASTAR Inc., Madison, WI).
使用标准PCR方法确认5’和3’侧翼序列和接点序列。5’侧翼序列和接点序列可使用SEQ ID NO:8或SEQ ID NO:12,组合SEQ ID NO:9、SEQ ID NO:13或SEQ ID NO:26来确认。3’侧翼序列和接点序列可使用SEQ ID NO:11或SEQ ID NO:14,组合SEQ ID NO:10、SEQ IDNO:15或SEQ ID NO:29来确认。PCR反应体系和扩增条件如表2和表3所示。本领域技术人员将理解,其他引物序列也可用于确认侧翼序列和接点序列。The 5' and 3' flanking and junction sequences were confirmed using standard PCR methods. The 5' flanking and junction sequences can be identified using SEQ ID NO:8 or SEQ ID NO:12 in combination with SEQ ID NO:9, SEQ ID NO:13 or SEQ ID NO:26. The 3' flanking and junction sequences can be identified using SEQ ID NO:11 or SEQ ID NO:14, in combination with SEQ ID NO:10, SEQ ID NO:15 or SEQ ID NO:29. The PCR reaction system and amplification conditions are shown in Table 2 and Table 3. Those skilled in the art will understand that other primer sequences can also be used to confirm flanking and junction sequences.
PCR产物的DNA测序提供了可以用于设计其他DNA分子的DNA,所述其他DNA分子作为引物和探针用于来源于转基因玉米事件DBN9858的玉米植物或种子的鉴定。DNA sequencing of the PCR products provided DNA that could be used to design additional DNA molecules as primers and probes for the identification of maize plants or seeds derived from transgenic maize event DBN9858.
发现在SEQ ID NO:5的核苷酸1-1067位显示的为玉米基因组序列在转基因玉米事件DBN9858插入序列的右边界侧翼(5’侧翼序列),在SEQ ID NO:5的核苷酸5829-6890位显示的为玉米基因组序列在转基因玉米事件DBN9858插入序列的左边界侧翼(3’侧翼序列)。5’接合序列在SEQ ID NO:1中列出, 3’接合序列在SEQ ID NO:2中列出。It was found that the maize genome sequence shown at nucleotides 1-1067 of SEQ ID NO:5 is flanking the right border (5' flanking sequence) of the transgenic maize event DBN9858 insert sequence, at nucleotide 5829 of SEQ ID NO:5 Position -6890 shows the maize genome sequence flanking the left border of the transgenic maize event DBN9858 insert (3' flanking sequence). The 5' junction sequence is set forth in SEQ ID NO:1 and the 3' junction sequence is set forth in SEQ ID NO:2.
3.3、PCR接合性测定3.3. PCR zygosity determination
接合序列是相对短的多核苷酸分子,其是新的DNA序列,当在多核酸检测分析中检测到时对于转基因玉米事件DBN9858的DNA是诊断性的。SEQ ID NO:1和SEQ ID NO:2中的接合序列为转基因玉米事件DBN9858中转基因片段的插入位点和玉米基因组DNA的每一侧的11个多核苷酸。更长或更短的多核苷酸接合序列可以从SEQ ID NO:3或SEQ ID NO:4中选择。接合序列(5’连接区域SEQ ID NO:1,和3’连接区域SEQ ID NO:2)作为DNA探针或作为DNA引物分子在DNA检测方法中是有用的。接合序列SEQ ID NO:6和SEQ ID NO:7也是转基因玉米事件DBN9858中新的DNA序列,其也可以作为DNA探针或作为DNA引物分子检测转基因玉米事件DBN9858DNA的存在。所述SEQ ID NO:6(SEQ ID NO:3的核苷酸第1068-1301位)跨越了DBN10006构建体DNA序列和pr35S启动子序列,所述SEQ ID NO:7(SEQ ID NO:4的核苷酸第1-248位)跨越了tNos终止子序列和DBN10006构建体DNA序列。Junction sequences are relatively short polynucleotide molecules that are novel DNA sequences that are diagnostic for the DNA of transgenic maize event DBN9858 when detected in a polynucleotide detection assay. The junction sequences in SEQ ID NO: 1 and SEQ ID NO: 2 are the insertion site of the transgene fragment in transgenic maize event DBN9858 and 11 polynucleotides on each side of the maize genomic DNA. Longer or shorter polynucleotide junction sequences can be selected from SEQ ID NO:3 or SEQ ID NO:4. Junction sequences (5' junction region SEQ ID NO: 1, and 3' junction region SEQ ID NO: 2) are useful in DNA detection methods as DNA probes or as DNA primer molecules. Junction sequences SEQ ID NO: 6 and SEQ ID NO: 7 are also novel DNA sequences in transgenic maize event DBN9858, which can also be used as DNA probes or as DNA primer molecules to detect the presence of transgenic maize event DBN9858 DNA. Said SEQ ID NO: 6 (the 1068-1301 nucleotides of SEQ ID NO: 3) spanned the DBN10006 construct DNA sequence and the pr35S promoter sequence, and said SEQ ID NO: 7 (the nucleotide of SEQ ID NO: 4) Nucleotides 1-248) span the tNos terminator sequence and the DBN10006 construct DNA sequence.
此外,通过使用来自SEQ ID NO:3或SEQ ID NO:4的至少一个引物来产生扩增子,所述引物用于PCR方法中时产生转基因玉米事件DBN9858的诊断性扩增子。In addition, an amplicon is generated by using at least one primer from SEQ ID NO:3 or SEQ ID NO:4, which when used in a PCR method generates a diagnostic amplicon of transgenic maize event DBN9858.
具体地,从转基因插入序列的5’未端产生PCR产物,该PCR产物为包含来源于转基因玉米事件DBN9858的植物材料的基因组中侧翼于T-DNA插入序列的5’末端的基因组DNA的一部分。这个PCR产物包含SEQ ID NO:3。为了进行PCR扩增,设计与侧翼于转基因插入序列的5’末端的基因组DNA序列杂交的引物5(SEQ ID NO:8),和与之配对的位于转基因tNos转录终止序列的引物6(SEQ ID NO:9)。Specifically, a PCR product was generated from the 5' end of the transgene insert, which was a portion of the genomic DNA flanking the 5' end of the T-DNA insert in the genome comprising plant material derived from transgenic maize event DBN9858. This PCR product comprises SEQ ID NO:3. For PCR amplification, primer 5 (SEQ ID NO: 8) was designed to hybridize to the genomic DNA sequence flanking the 5' end of the transgene insert sequence (SEQ ID NO: 8), and its paired primer 6 (SEQ ID NO: 8) located at the transcription termination sequence of the transgene tNos NO:9).
从转基因插入序列的3’未端产生PCR产物,该PCR产物包含来源于转基因玉米事件DBN9858的植物材料的基因组中侧翼于T-DNA插入序列的3’末端的基因组DNA的一部分。这个PCR产物包含SEQ ID NO:4。为了进行PCR扩增,设计与侧翼于转基因插入序列的3’末端的基因组DNA序列杂交的引物8(SEQ ID NO:11),和与之配对的位于插入物的3’未端的pr35S启动子序列的引物7(SEQ IDNO:10)。A PCR product comprising a portion of the genomic DNA flanking the 3' end of the T-DNA insert in the genome of plant material derived from transgenic maize Event DBN9858 was generated from the 3' end of the transgene insert. This PCR product comprises SEQ ID NO:4. For PCR amplification, primer 8 (SEQ ID NO:11) was designed to hybridize to the genomic DNA sequence flanking the 3' end of the transgene insert sequence, and paired with the pr35S promoter sequence located at the 3' end of the insert Primer 7 (SEQ ID NO: 10).
表2和表3中说明的DNA扩增条件可以用于上述PCR接合性试验以产生转基因玉米事件DBN9858的诊断性扩增子。扩增子的检测可以通过使用如表3所示的StratageneRobocycler、MJ Engine、Perkin-Elmer 9700或Eppendorf Mastercycler Gradien热循环仪等进行,或通过本领域技术人员已知的方法和设备进行。The DNA amplification conditions described in Tables 2 and 3 can be used in the PCR zygosity assay described above to generate diagnostic amplicons for transgenic maize event DBN9858. The detection of the amplicon can be performed by using Stratagene Robocycler, MJ Engine, Perkin-Elmer 9700 or Eppendorf Mastercycler Gradien thermal cycler as shown in Table 3, or by methods and equipment known to those skilled in the art.
表2、用于转基因玉米事件DBN9858的5’转基因插入物/基因组接合区域鉴定的PCR步骤和反应混合物条件Table 2. PCR steps and reaction mixture conditions for identification of the 5' transgene insert/genome junction region of transgenic maize event DBN9858
表3、Perkin-Elmer9700热循环仪条件Table 3. Perkin-Elmer9700 thermal cycler conditions
轻轻地混合,如果热循环仪上没有保温帽,可以在每个反应液上方添加1-2滴矿物油。使用以下循环参数(表3)在Stratagene Robocycler(Stratagene,La Jolla,CA)、MJEngine(MJ R-Biorad,Hercules,CA)、Perkin-Elmer 9700(Perkin Elmer,Boston,MA)或Eppendorf Mastercycler Gradient(Eppendorf,Hamburg, Germany)热循环仪上进行PCR。MJ Engine或Eppendorf Mastercycler Gradient热循环仪应当在计算的模式下运行。Perkin-Elmer 9700热循环仪运行时要将变温速率(ramp speed)设定为最大值。Mix gently and add 1-2 drops of mineral oil on top of each reaction if there is no thermal cap on the thermal cycler. Using the following cycling parameters (Table 3) in Stratagene Robocycler (Stratagene, La Jolla, CA), MJEngine (MJ R-Biorad, Hercules, CA), Perkin-Elmer 9700 (Perkin Elmer, Boston, MA) or Eppendorf Mastercycler Gradient (Eppendorf , Hamburg, Germany) thermal cycler for PCR. The MJ Engine or Eppendorf Mastercycler Gradient thermal cycler should be run in calculation mode. The Perkin-Elmer 9700 Thermal Cycler was run with the ramp speed set to the maximum value.
实验结果表明:引物5和6(SEQ ID NO:8和9),当其用在转基因玉米事件DBN9858基因组DNA的PCR反应中时,产生1301bp片段的扩增产物,当其用在未转化玉米基因组DNA和非DBN9858玉米基因组DNA的PCR反应中时,没有片段被扩增;引物7和8(SEQ ID NO:10和11),当其用在转基因玉米事件DBN9858基因组DNA的PCR反应中时,产生1310bp片段的扩增产物,当其用在未转化玉米基因组DNA和非DBN9858玉米基因组DNA的PCR反应中时,没有片段被扩增。The experimental results show that: primers 5 and 6 (SEQ ID NO: 8 and 9), when used in the PCR reaction of the transgenic corn event DBN9858 genomic DNA, produce an amplification product of 1301bp fragment, when used in the non-transformed corn genome DNA and non-DBN9858 maize genomic DNA in a PCR reaction, no fragment was amplified; primers 7 and 8 (SEQ ID NO: 10 and 11), when used in a PCR reaction of transgenic maize event DBN9858 genomic DNA, produced The amplified product of the 1310 bp fragment, when it was used in a PCR reaction of non-transformed maize genomic DNA and non-DBN9858 maize genomic DNA, no fragment was amplified.
PCR接合性测定还可用于鉴定来源于转基因玉米事件DBN9858的材料是纯合子或是杂合子。将引物9(SEQ ID NO:12)、引物10(SEQ ID NO:13)和引物11(SEQ ID NO:14)用于扩增反应以产生转基因玉米事件DBN9858的诊断性扩增子。表4和表5中说明的DNA扩增条件可以用于上述接合性试验以产生转基因玉米事件DBN9858的诊断性扩增子。PCR zygosity assays can also be used to identify whether material derived from transgenic maize event DBN9858 is homozygous or heterozygous. Primer 9 (SEQ ID NO: 12), Primer 10 (SEQ ID NO: 13) and Primer 11 (SEQ ID NO: 14) were used in amplification reactions to generate diagnostic amplicons for transgenic maize event DBN9858. The DNA amplification conditions described in Tables 4 and 5 can be used in the zygosity assay described above to generate diagnostic amplicons for transgenic maize event DBN9858.
表4、接合性测定反应液Table 4. Reaction solution for zygosity determination
表5、接合性测定Perkin-Elmer9700热循环仪条件Table 5. Zygosity determination Perkin-Elmer9700 thermal cycler conditions
使用以下循环参数(表5)在Stratagene Robocycler(Stratagene,La Jolla,CA)、MJ Engine(MJ R-Biorad,Hercules,CA)、Perkin-Elmer 9700(Perkin Elmer,Boston,MA)或Eppendorf Mastercycler Gradient(Eppendorf,Hamburg,Germany)热循环仪上进行PCR。MJ Engine或Eppendorf Mastercycler Gradient热循环仪应当在计算的模式下运行。Perkin-Elmer 9700热循环仪运行时要将变温速率(ramp speed)设定为最大值。Cycling was performed on a Stratagene Robocycler (Stratagene, La Jolla, CA), MJ Engine (MJ R-Biorad, Hercules, CA), Perkin-Elmer 9700 (Perkin Elmer, Boston, MA) or Eppendorf Mastercycler Gradient ( Eppendorf, Hamburg, Germany) thermal cycler for PCR. The MJ Engine or Eppendorf Mastercycler Gradient thermal cycler should be run in calculation mode. The Perkin-Elmer 9700 Thermal Cycler was run with the ramp speed set to the maximum value.
在所述扩增反应中,含有模板DNA的生物样品含有诊断该样品中转基因玉米事件DBN9858的存在情况的DNA。或者反应将由含有来源于玉米基因组的DNA的生物样品产生两个不同的DNA扩增子,所述来源于玉米基因组的DNA相对于转基因玉米事件DBN9858中存在的插入DNA对应的等位基因是杂合的。这两个不同的扩增子将对应于来源于野生型玉米基因组基因座的第一扩增子和诊断转基因玉米事件DBN9858DNA的存在情况的第二扩增子。仅产生对应于针对杂合基因组描述的第二扩增子的单个扩增子的玉米DNA样品,可诊断确定该样品中转基因玉米事件DBN9858的存在,且该样品由相对于转基因玉米植物DBN9858中存在的插入DNA对应的等位基因为纯合的玉米种子所产生。In the amplification reaction, the biological sample containing template DNA contains DNA diagnostic for the presence of transgenic maize event DBN9858 in the sample. Or the reaction will yield two different DNA amplicons from a biological sample containing DNA derived from the maize genome that is heterozygous for the allele corresponding to the inserted DNA present in transgenic maize event DBN9858 of. These two distinct amplicons would correspond to the first amplicon derived from the wild-type maize genomic locus and the second amplicon diagnostic for the presence of transgenic maize event DBN9858 DNA. Generating only a single amplicon corresponding to the second amplicon described for the heterozygous genome, a maize DNA sample in which the presence of transgenic maize event DBN9858 can be diagnostically determined is generated relative to the presence in transgenic maize plants of DBN9858 The alleles corresponding to the inserted DNA are produced in maize seeds that are homozygous.
需要说明的是,转基因玉米事件DBN9858的引物对被用于产生对转基因玉米事件DBN9858基因组DNA为诊断性的扩增子。这些引物对包括但不限于,引物5和6(SEQ ID NO:8和9),和引物7和8(SEQ ID NO:10和11),用于所述的DNA扩增方法中。另外,用于扩增玉米内源基因的一个对照引物12和13(SEQ ID NO:22和23)被包括在内,作为反应条件的一个内在标准。对转基因玉米事件DBN9858的DNA抽提样品分析应该包括一个转基因玉米事件DBN9858的阳性组织DNA抽提物对照,一个来源于非转基因玉米事件DBN9858的阴性DNA抽提物对照和一个不含有模板玉米DNA抽提物的阴性对照。除了这些引物对之外,还可以使用来自SEQ ID NO:3或SEQ ID NO:4、或其互补序列的任何引物对,当它们被用于DNA扩增反应时分别产生对于来源于转基因事件玉米植物DBN9858的组织为诊断性的包含SEQ ID NO:1或SEQ ID NO:2的扩增子。表2-表5中说明的DNA扩增条件可以用于使用合适的引物对以产生转基因玉米事件DBN9858的诊断性扩增子。当在DNA扩增方法中测试时产生对转基因玉米事件DBN9858为诊断性的扩增子的、推定含有包含转基因玉米事件 DBN9858的玉米植物或种子DNA的提取物,或来源于转基因玉米事件DBN9858的产物,可以被用作扩增的模板,来确定是否存在转基因玉米事件DBN9858。It should be noted that the primer pair for transgenic maize event DBN9858 was used to generate amplicons that were diagnostic for the genomic DNA of transgenic maize event DBN9858. These primer pairs include, but are not limited to, primers 5 and 6 (SEQ ID NO: 8 and 9), and primers 7 and 8 (SEQ ID NO: 10 and 11), used in the DNA amplification method. Additionally, a control primer 12 and 13 (SEQ ID NO: 22 and 23) for amplifying endogenous maize genes was included as an internal standard for reaction conditions. Analysis of DNA extract samples from GM maize event DBN9858 should include a positive tissue DNA extract control from GM maize event DBN9858, a negative DNA extract control from non-GM maize event DBN9858 and a maize DNA extract containing no template. Extract negative control. In addition to these primer pairs, any primer pair from SEQ ID NO: 3 or SEQ ID NO: 4, or their complement, which when used in a DNA amplification reaction respectively produces Tissues from plant DBN9858 were diagnostic comprising the amplicon of SEQ ID NO:1 or SEQ ID NO:2. The DNA amplification conditions described in Tables 2-5 can be used to generate diagnostic amplicons for transgenic maize event DBN9858 using appropriate primer pairs. An extract putatively containing DNA from a maize plant or seed comprising transgenic maize event DBN9858, or a product derived from transgenic maize event DBN9858, that produces an amplicon that is diagnostic for transgenic maize event DBN9858 when tested in a DNA amplification method , can be used as a template for amplification to determine the presence or absence of transgenic maize event DBN9858.
第四实施例、通过Southern印迹杂交进行转基因玉米事件DBN9858检测The fourth embodiment, detection of transgenic maize event DBN9858 by Southern blot hybridization
4.1、用于Southern印迹杂交的DNA提取4.1. DNA extraction for Southern blot hybridization
利用T4、T5代纯合的转化事件进行Southern印迹分析。利用研钵和研杵,在液氮中研磨大约5到10g植物组织。在12.5mL提取缓冲液A(0.2M Tris pH8.0,50mM EDTA,0.25MNaCl,0.1%v/vβ-疏基乙醇,2.5%w/v聚乙烯-吡咯烷酮)中重悬浮植物组织,以4000rpm离心10分钟(2755g)。弃掉上清液后,在2.5mL提取缓冲液B(0.2M Tris pH 8.0,50mM EDTA,0.5M NaCl,1%v/vβ-疏基乙醇,2.5%w/v聚乙烯-吡咯烷酮,3%肌氨酰,20%乙醇)中重悬浮沉淀,并且在37℃温育30分钟。在温育期间,用无菌环混合样品一次。温育后,添加等体积的氯仿/异戊醇(24:1),通过倒置轻轻混合,以4000rpm离心20分钟。收集含水层,并且在添加0.54体积异丙醇后以4000rpm离心5分钟以沉淀DNA。弃掉上清液,并且在500μLTE中重悬浮DNA沉淀。为了降解任何存在的RNA,在37℃,将DNA和1μL 30mg/mlLRNAase A温育30分钟,以4000rpm离心5分钟,并且在0.5体积7.5M醋酸铵和0.54体积异丙醇存在的情况下,通过以14000rpm离心10分钟沉淀DNA。弃掉上清液后,用500μL质量分数为70%的乙醇洗沉淀,并且使其干燥后在100μL TE中重悬浮。Southern blot analysis was performed using homozygous transformation events in the T4 and T5 generations. Using a mortar and pestle, grind approximately 5 to 10 g of plant tissue in liquid nitrogen. Resuspend plant tissue in 12.5 mL of extraction buffer A (0.2M Tris pH 8.0, 50 mM EDTA, 0.25M NaCl, 0.1% v/v β-mercaptoethanol, 2.5% w/v polyvinyl-pyrrolidone) and centrifuge at 4000 rpm 10 minutes (2755g). After discarding the supernatant, in 2.5mL extraction buffer B (0.2M Tris pH 8.0, 50mM EDTA, 0.5M NaCl, 1% v/v β-mercaptoethanol, 2.5% w/v polyvinyl-pyrrolidone, 3% Sarkosyl, 20% ethanol) and incubated at 37°C for 30 minutes. During the incubation, the samples were mixed once with a sterile loop. After incubation, an equal volume of chloroform/isoamyl alcohol (24:1 ) was added, mixed gently by inversion, and centrifuged at 4000 rpm for 20 minutes. The aqueous layer was collected and centrifuged at 4000 rpm for 5 minutes after addition of 0.54 volumes of isopropanol to pellet the DNA. The supernatant was discarded, and the DNA pellet was resuspended in 500 μLTE. To degrade any RNA present, DNA was incubated with 1 μL of 30 mg/ml LRNAase A for 30 min at 37 °C, centrifuged at 4000 rpm for 5 min, and passed through in the presence of 0.5 volume of 7.5 M ammonium acetate and 0.54 volume of isopropanol. DNA was pelleted by centrifugation at 14000 rpm for 10 minutes. After discarding the supernatant, the pellet was washed with 500 μL of 70% ethanol, dried and resuspended in 100 μL of TE.
4.2、限制酶消化4.2. Restriction enzyme digestion
利用分光光度计或荧光计定量检测DNA浓度(利用1×TNE和Hoechst染料)。DNA concentration was quantified using a spectrophotometer or fluorometer (using 1X TNE and Hoechst dye).
在100μL反应体系中,每次消化5μg DNA。用限制性内切酶Sac I和Hind III分别消化基因组DNA,以T-DNA上EPSPS和PAT的部分序列作为探针。对于每种酶,在适当的温度下温育过夜消化物。利用真空离心蒸发浓缩器(speed vacuum)旋转样品以减少体积至30μL。In a 100 μL reaction system, digest 5 μg of DNA each time. Genomic DNA was digested with restriction endonucleases Sac I and Hind III respectively, and partial sequences of EPSPS and PAT on T-DNA were used as probes. For each enzyme, digests were incubated overnight at the appropriate temperature. The sample was spun down using a speed vacuum to reduce the volume to 30 [mu]L.
4.3、凝胶电泳4.3. Gel electrophoresis
向来源于本实施例4.2中的每个样品添加溴酚蓝加样染料,并且将每个样品加样到含有溴化乙锭的0.7%琼脂糖凝胶上,在TBE电泳缓冲液中电泳分离,在20伏特下电泳凝胶过夜。Add bromophenol blue loading dye to each sample derived from Example 4.2, and load each sample on a 0.7% agarose gel containing ethidium bromide, and separate by electrophoresis in TBE electrophoresis buffer , run the gel overnight at 20 volts.
在0.25M HCl中洗凝胶15分钟以使DNA脱嘌呤,然后用水洗。设定Southern印迹杂交如下:在盘中放置20张厚的干燥印迹纸,其上再放置4张薄的干燥印迹纸。在0.4M NaOH中预先湿润1张薄印迹纸,并且放置在该纸堆上,接着放置1张在0.4M NaOH中预先湿润的Hybond-N+转移膜(Amersham Pharmacia Biotech,#RPN303B)。凝胶置放在上部,确保在凝胶和膜之间没有气泡。3张另外预先浸泡的印迹纸被放置在凝胶上部,并且用0.4M NaOH填满 缓冲液盘。用预先浸泡在0.4M NaOH中的灯芯连接凝胶堆层和缓冲液盘,将DNA转移到膜上。在室温下进行大约4小时的DNA转移。转移后,在2×SSC中漂洗Hybond膜10秒,DNA通过UV交联与膜结合。The gel was washed in 0.25M HCl for 15 minutes to depurinate the DNA, followed by washing with water. The Southern blot hybridization was set up as follows: 20 thick sheets of dry blotting paper were placed in a dish and 4 thin sheets of dry blotting paper were placed on top of them. A sheet of thin blotting paper was pre-wetted in 0.4M NaOH and placed on top of the stack, followed by a sheet of Hybond-N+ transfer membrane (Amersham Pharmacia Biotech, #RPN303B) pre-wetted in 0.4M NaOH. The gel is placed on top, making sure there are no air bubbles between the gel and the membrane. 3 additional pre-soaked blotting papers were placed on top of the gel and the buffer tray was filled with 0.4M NaOH. The DNA was transferred to the membrane by connecting the gel stack and the buffer disc with a wick pre-soaked in 0.4 M NaOH. Perform DNA transfer for approximately 4 hours at room temperature. After transfer, the Hybond membrane was rinsed in 2×SSC for 10 seconds, and the DNA was bound to the membrane by UV crosslinking.
4.4、杂交4.4 Hybridization
用PCR扩增适合的DNA序列用于探针制备。所述DNA探针为SEQ ID NO:24和SEQ IDNO:25,或者与上述序列部分同源或互补。将25ng探针DNA在45μLTE中煮沸5分钟,在冰上放置7分钟,然后转移到RediprimeⅡ(Amersham Pharmacia Biotech,#RPN1633)试管中。向Rediprime试管添加5μl32P标记的dCTP后,在37℃温育探针15分钟。根据制造商的说明书,通过微离心G-50柱子(Amersham Pharmacia Biotech,#27-5330-01)离心,以移除未掺入的dNTPs,纯化该探针。利用闪烁计数仪测量探针活性。Appropriate DNA sequences were amplified by PCR for probe preparation. The DNA probes are SEQ ID NO: 24 and SEQ ID NO: 25, or are partially homologous or complementary to the above sequences. 25 ng of probe DNA was boiled in 45 μLTE for 5 minutes, placed on ice for 7 minutes, and then transferred to a Rediprime II (Amersham Pharmacia Biotech, #RPN1633) tube. After adding 5 μl of 32P-labeled dCTP to the Rediprime tube, the probe was incubated at 37° C. for 15 minutes. The probe was purified by centrifugation on a microcentrifuge G-50 column (Amersham Pharmacia Biotech, #27-5330-01 ) to remove unincorporated dNTPs according to the manufacturer's instructions. Probe activity was measured using a scintillation counter.
通过在65℃用20mL预加温的Church预杂交液(500mM Na3P04,1mM EDTA,7%SDS,1%BSA)湿润该Hybond膜30分钟,预杂交该Hybond膜。煮沸标记的探针5分钟,并且在冰上放置10分钟。向预杂交缓冲液添加适量探针(每1mL预杂交缓冲液1百万次计数),在65℃过夜进行杂交。第二天,弃掉杂交缓冲液,用20mLChurch冲洗溶液1(40mM Na3P04,1mM EDTA,5%SDS,0.5%BSA)漂洗后,在65℃下,在150mL Church冲洗溶液1中洗膜20分钟。用Church冲洗溶液2(40mM Na3P04,1mM EDTA,1%SDS)重复该过程2次。将该膜暴露于磷屏或X光片以检测探针结合的位置。The Hybond membrane was prehybridized by wetting the Hybond membrane with 20 mL of pre-warmed Church prehybridization solution (500 mM Na3P04, 1 mM EDTA, 7% SDS, 1% BSA) at 65°C for 30 minutes. The labeled probes were boiled for 5 minutes and placed on ice for 10 minutes. An appropriate amount of probe (1 million counts per 1 mL of prehybridization buffer) was added to the prehybridization buffer, and hybridization was performed overnight at 65°C. The next day, the hybridization buffer was discarded, and after rinsing with 20 mL of Church Washing Solution 1 (40 mM Na3P04, 1 mM EDTA, 5% SDS, 0.5% BSA), the membrane was washed in 150 mL of Church Washing Solution 1 at 65°C for 20 minutes. This process was repeated twice with Church rinse solution 2 (40 mM Na3P04, 1 mM EDTA, 1% SDS). The membrane is exposed to a phosphor screen or X-ray film to detect where the probe binds.
每个Southern上包括三种对照样品:(1)来自阴性(未转化的)的分离子的DNA,其用于鉴定任何可与元件-特异性探针杂交的内源玉米序列;(2)来自阴性分离子的DNA,其中引入了Hind III-消化的DBN10006,其量基于探针长度等价于一个拷贝数,以说明在检测玉米基因组内的单个基因拷贝时,该实验的灵敏度;和(3)基于探针长度等价于一个拷贝数的Hind III-消化的DBN10006质粒,其作为杂交的阳性对照并用于说明实验的灵敏度。Three control samples were included on each Southern: (1) DNA from negative (untransformed) segregants, which was used to identify any endogenous maize sequences that could hybridize with element-specific probes; (2) DNA from DNA from a negative segregant incorporating Hind III-digested DBN10006 in an amount equivalent to one copy number based on probe length to illustrate the sensitivity of the assay in detecting single gene copies within the maize genome; and (3 ) based on a probe length equivalent to one copy number of HindIII-digested DBN10006 plasmid, which served as a positive control for hybridization and was used to illustrate the sensitivity of the experiment.
杂交数据提供了确证的证据支持TaqManTMPCR分析,即玉米植物DBN9858含有EPSPS和PAT基因的单拷贝。利用该EPSPS探针,Sac I和Hind III酶解分别产生大小约4kb和11kb的单一条带;利用该PAT探针,Sac I和Hind III酶解分别产生大小约3.5kb和1.8kb的单一条带。这表明EPSPS和PAT各一个拷贝存在于玉米转化事件DBN9858中。Hybridization data provided corroborating evidence in support of TaqMan™ PCR analysis that maize plant DBN9858 contained single copies of the EPSPS and PAT genes. Using this EPSPS probe, Sac I and Hind III enzymatically digested to produce single bands of about 4kb and 11kb in size respectively; using this PAT probe, Sac I and Hind III enzymatically digested to produce single bands of about 3.5kb and 1.8kb in size respectively bring. This indicates that one copy each of EPSPS and PAT was present in maize transformation event DBN9858.
第五实施例、事件的除草剂耐受性检测The fifth embodiment, the herbicide tolerance detection of event
本试验选用农达除草剂(41%草甘膦异丙铵盐水剂)和保试达除草剂(有效成分18%的草铵膦)进行喷施。采用随机区组设计,3次重复。小区面积为15m2(5m×3m),行距60cm,株距25cm,常规栽培管理,小区之间有1m的宽隔离带。将转基因玉米事件DBN9858分别进行如下3种处理:1)不喷施;2)按1680g a.e./ha剂量在V3叶期喷洒农达除草剂,然后在V8期按相同剂量 再次喷洒农达除草剂;3)按800g a.i./ha剂量在V3叶期喷洒保试达(Basta)除草剂,然后在V8期按相同剂量再次喷洒保试达(Basta)除草剂。需要说明的是,不同含量和剂型的草甘膦除草剂换算成等量草甘膦酸的形式,以及不同浓度的草铵膦溶液换算成上述等量有效成分草铵膦均适用于以下结论。In this experiment, Roundup herbicide (41% glyphosate isopropyl ammonium salt solution) and Baoshida herbicide (18% glufosinate-ammonium active ingredient) were selected for spraying. A random block design was adopted with 3 repetitions. The area of the plot is 15m2 (5m×3m), the row spacing is 60cm, the plant spacing is 25cm, conventional cultivation and management, and there is a 1m wide isolation zone between the plots. The transgenic corn event DBN9858 was subjected to the following three treatments: 1) no spraying; 2) spraying Roundup herbicide at the V3 leaf stage at a dose of 1680 g a.e./ha, and then spraying Roundup herbicide again at the V8 stage at the same dose; 3) Spray Basta herbicide at V3 leaf stage according to 800g a.i./ha dose, and then spray Basta herbicide again at V8 stage with the same dosage. It should be noted that the conversion of glyphosate herbicides with different contents and formulations into the equivalent amount of glyphosate acid, and the conversion of different concentrations of glufosinate-ammonium solutions into the above-mentioned equivalent active ingredient glufosinate-ammonium are applicable to the following conclusions.
分别在用药后1周和2周调查药害症状,并在收获时测定小区的玉米产量。药害症状分级如表6所示。用除草剂受害率作为评价转化事件的除草剂耐受性的指标,具体地,除草剂受害率(%)=∑(同级受害株数×级别数)/(总株数×最高级别);其中除草剂受害率包括草甘膦受害率和草铵膦受害率,除草剂受害率是根据草甘膦或草铵膦处理后2周的药害调查结果而确定的。每个小区的玉米产量是称量各小区中间3行的玉米粒总产量(重量),不同处理间的产量差异以产量百分率的形式进行度量,产量百分率(%)=喷施产量/不喷施产量。转基因玉米事件DBN9858对除草剂耐受性的结果和玉米产量结果如表7所示。The symptoms of phytotoxicity were investigated 1 week and 2 weeks after the application, and the corn yield of the plot was measured at the time of harvest. The grading of phytotoxicity symptoms is shown in Table 6. The herbicide damage rate is used as an index to evaluate the herbicide tolerance of the transformation event, specifically, the herbicide damage rate (%)=∑(the number of injured plants of the same level×the number of levels)/(the total number of plants×the highest level); Herbicide damage rate includes glyphosate damage rate and glufosinate-ammonium damage rate, herbicide damage rate is determined according to the phytotoxicity investigation results 2 weeks after glyphosate or glufosinate-ammonium treatment. The corn yield of each plot is the total yield (weight) of corn kernels in the middle 3 rows of each plot, and the yield difference between different treatments is measured in the form of yield percentage, yield percentage (%)=sprayed yield/no spraying Yield. The results of herbicide tolerance and corn yield of transgenic corn event DBN9858 are shown in Table 7.
表6、除草剂对玉米药害程度的分级标准Table 6. Grading standards for the degree of herbicide damage to corn
表7、转基因玉米事件DBN9858对除草剂耐受性的结果和玉米产量结果Table 7. Results of herbicide tolerance and corn yield of transgenic corn event DBN9858
结果说明,在除草剂(草甘膦和草铵膦)受害率方面:1)转基因玉米事件DBN9858在草甘膦除草剂(1680g a.e./ha)处理下受害率基本为0;转基因玉米事件DBN9858在草铵膦除草剂(800g a.i./ha)处理下受害率也基本为0;由此,转基因玉米事件DBN9858具有良好的除草剂(草甘膦和草铵膦)耐受性。The results showed that in terms of herbicide (glyphosate and glufosinate) damage rate: 1) the damage rate of the transgenic corn event DBN9858 was basically 0 under the treatment of glyphosate herbicide (1680g a.e./ha); The damage rate under the treatment of glufosinate-ammonium herbicide (800g a.i./ha) was basically 0; thus, the transgenic corn event DBN9858 has good herbicide (glyphosate and glufosinate-ammonium) tolerance.
在产量方面:转基因玉米事件DBN9858在不喷施、草甘膦除草剂(1680g a.e./ha)和草铵膦除草剂(800g a.i./ha)3种处理下产量没有明显差异;在喷施除草剂后,转基因玉米事件DBN9858的产量反而略有增加,由此,进一步表明转基因玉米事件DBN9858具有良好的除草剂(草甘膦和草铵膦)耐受性。In terms of yield: the transgenic corn event DBN9858 had no significant difference in yield under the three treatments of no spraying, glyphosate herbicide (1680g a.e./ha) and glufosinate-ammonium herbicide (800g a.i./ha); Afterwards, the yield of the transgenic maize event DBN9858 increased slightly, thus further indicating that the transgenic maize event DBN9858 has good herbicide (glyphosate and glufosinate) tolerance.
第六实施例Sixth embodiment
可由转基因玉米事件DBN9858生产诸如农产品或商品。如果在所述农产品或商品中检测到足够的表达量,所述农产品或商品预期含有能够诊断转基因玉米事件DBN9858材料在所述农产品或商品中存在的核苷酸序列。所述农产品或商品包括但不限于玉米油、玉米粗粉、玉米面、玉米面筋、玉米饼、玉米淀粉、以及将要作为食物源供动物消费的任何其他食品、或者另外作为膨大剂或化妆组合物中的成分用于化妆用途等。基于探针或引物对的核酸检测方法和/或试剂盒可以被开发以检测生物样品中诸如SEQ ID NO:1或SEQ ID NO:2所示的转基因玉米事件DBN9858核苷酸序列,其中探针序列或引物序列选自如SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4和SEQ ID NO:5中所示的序列,以诊断转基因玉米事件DBN9858的存在。Agricultural products or commodities such as can be produced from transgenic maize event DBN9858. If sufficient expression levels are detected in the agricultural product or commodity, the agricultural product or commodity is expected to contain a nucleotide sequence capable of diagnosing the presence of transgenic maize event DBN9858 material in the agricultural product or commodity. Such agricultural products or commodities include, but are not limited to, corn oil, corn meal, cornmeal, corn gluten, corn tortillas, cornstarch, and any other food product that is to be consumed by an animal as a food source, or otherwise as a bulking agent or in a cosmetic composition The ingredients are used for cosmetic purposes etc. Nucleic acid detection methods and/or kits based on probes or primer pairs can be developed to detect the transgenic maize event DBN9858 nucleotide sequence such as shown in SEQ ID NO:1 or SEQ ID NO:2 in biological samples, wherein the probe The sequence or primer sequence is selected from the sequence as shown in SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4 and SEQ ID NO:5 to diagnose the presence of transgenic maize event DBN9858.
综上所述,本发明转基因玉米事件DBN9858对草甘膦除草剂和草铵膦除草剂具有较好的耐受性,对产量无影响,且检测方法可以准确快速的鉴定生物样品中是否包含转基因玉米事件DBN9858的DNA分子。In summary, the transgenic corn event DBN9858 of the present invention has good tolerance to glyphosate herbicide and glufosinate-ammonium herbicide, has no effect on yield, and the detection method can accurately and quickly identify whether the biological sample contains transgene DNA molecule from maize event DBN9858.
对应于转基因玉米事件DBN9858的种子已于2014年12月24日保藏在中国微生物菌种保藏管理委员会普通微生物中心(简称CGMCC,地址:北京市朝阳区北辰西路1号院3号,中国科学院微生物研究所,邮编100101),分类命名:玉米(Zea mays),保藏编号为CGMCCNo.10212。保藏物将在保藏处保藏30年。The seeds corresponding to the genetically modified corn event DBN9858 were preserved on December 24, 2014 in the General Microbiology Center of China Committee for Microorganism Culture Collection (CGMCC for short, address: No. 3, Yard 1, Beichen West Road, Chaoyang District, Beijing, Microbiology, Chinese Academy of Sciences Research Institute, zip code 100101), classification name: corn (Zea mays), deposit number is CGMCCNo.10212. The deposit will be kept in the depository for 30 years.
最后所应说明的是,以上实施例仅用以说明本发明的技术方案而非限制,尽管参照较佳实施例对本发明进行了详细说明,本领域的普通技术人员应当理解,可以对本发明的技术方案进行修改或者等同替换,而不脱离本发明技术方案的精神和范围。Finally, it should be noted that the above embodiments are only used to illustrate the technical solutions of the present invention without limitation. Although the present invention has been described in detail with reference to the preferred embodiments, those of ordinary skill in the art should understand that the technical solutions of the present invention can be The scheme shall be modified or equivalently replaced without departing from the spirit and scope of the technical scheme of the present invention.
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