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Ko et al., 2006 - Google Patents

Obtaining provably good performance from suffix trees in secondary storage

Ko et al., 2006

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Document ID
2869527139356324738
Author
Ko P
Aluru S
Publication year
Publication venue
Combinatorial Pattern Matching: 17th Annual Symposium, CPM 2006, Barcelona, Spain, July 5-7, 2006. Proceedings 17

External Links

Snippet

Designing external memory data structures for string data-bases is of significant recent interest due to the proliferation of biological sequence data. The suffix tree is an important indexing structure that provides optimal algorithms for memory bound data. However, string …
Continue reading at citeseerx.ist.psu.edu (PDF) (other versions)

Classifications

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    • G06COMPUTING; CALCULATING; COUNTING
    • G06FELECTRICAL DIGITAL DATA PROCESSING
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    • G06F17/30286Information retrieval; Database structures therefor; File system structures therefor in structured data stores
    • G06F17/30312Storage and indexing structures; Management thereof
    • G06F17/30321Indexing structures
    • G06F17/30336Indexing structures indexing structure managing details
    • GPHYSICS
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    • G06F17/3061Information retrieval; Database structures therefor; File system structures therefor of unstructured textual data
    • G06F17/30613Indexing
    • G06F17/30619Indexing indexing structures
    • G06F17/30625Trees
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    • G06F17/3033Hash tables
    • GPHYSICS
    • G06COMPUTING; CALCULATING; COUNTING
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    • G06F17/30321Indexing structures
    • G06F17/30327Trees, e.g. B+trees
    • GPHYSICS
    • G06COMPUTING; CALCULATING; COUNTING
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    • G06F17/30964Querying
    • G06F17/30979Query processing
    • G06F17/30985Query processing by using string matching techniques
    • GPHYSICS
    • G06COMPUTING; CALCULATING; COUNTING
    • G06FELECTRICAL DIGITAL DATA PROCESSING
    • G06F17/00Digital computing or data processing equipment or methods, specially adapted for specific functions
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    • G06F17/30943Information retrieval; Database structures therefor; File system structures therefor details of database functions independent of the retrieved data type
    • G06F17/30946Information retrieval; Database structures therefor; File system structures therefor details of database functions independent of the retrieved data type indexing structures
    • G06F17/30961Trees
    • GPHYSICS
    • G06COMPUTING; CALCULATING; COUNTING
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    • G06F17/30943Information retrieval; Database structures therefor; File system structures therefor details of database functions independent of the retrieved data type
    • G06F17/30946Information retrieval; Database structures therefor; File system structures therefor details of database functions independent of the retrieved data type indexing structures
    • G06F17/30949Information retrieval; Database structures therefor; File system structures therefor details of database functions independent of the retrieved data type indexing structures hash tables
    • GPHYSICS
    • G06COMPUTING; CALCULATING; COUNTING
    • G06FELECTRICAL DIGITAL DATA PROCESSING
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    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
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    • Y10S707/99941Database schema or data structure
    • Y10S707/99942Manipulating data structure, e.g. compression, compaction, compilation
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10TECHNICAL SUBJECTS COVERED BY FORMER USPC
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    • Y10S707/99943Generating database or data structure, e.g. via user interface
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
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    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10TECHNICAL SUBJECTS COVERED BY FORMER USPC
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    • Y10S707/953Organization of data
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10STECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10S707/00Data processing: database and file management or data structures
    • Y10S707/99951File or database maintenance

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