[go: up one dir, main page]
More Web Proxy on the site http://driver.im/

Miranda et al., 2022 - Google Patents

Detection of allele-specific 3D chromatin interactions using high-resolution In-nucleus 4C-seq

Miranda et al., 2022

View PDF
Document ID
7693266775340835164
Author
Miranda M
Noordermeer D
Moindrot B
Publication year
Publication venue
Spatial Genome Organization: Methods and Protocols

External Links

Snippet

Chromosome conformation capture techniques are a set of methods used to determine 3D genome organization through the capture and identification of physical contacts between pairs of genomic loci. Among them, 4C-seq (circular chromosome conformation capture …
Continue reading at hal.science (PDF) (other versions)

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES OR MICRO-ORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6802—General aspects
    • C12Q1/6809—Sequence identification involving differential detection
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES OR MICRO-ORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6846—Common amplification features
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES OR MICRO-ORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6827—Hybridisation assays for mutation or polymorphism detection
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES OR MICRO-ORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6802—General aspects
    • C12Q1/6811—Selection methods for production or design of target specific oligonucleotide or binding molecules
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICRO-ORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING OR MAINTAINING MICRO-ORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034—Isolating an individual clone by screening libraries
    • C12N15/1093—General methods of preparing gene libraries, not provided for in other subgroups
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES OR MICRO-ORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6802—General aspects
    • C12Q1/6806—Preparing nucleic acids for analysis, e.g. for PCR assay
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES OR MICRO-ORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by the preceding groups
    • G01N33/48—Investigating or analysing materials by specific methods not covered by the preceding groups biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES OR MICRO-ORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/02—Measuring or testing processes involving enzymes, nucleic acids or micro-organisms; Compositions therefor; Processes of preparing such compositions involving viable micro-organisms
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING; COUNTING
    • G06F—ELECTRICAL DIGITAL DATA PROCESSING
    • G06F19/00—Digital computing or data processing equipment or methods, specially adapted for specific applications
    • G06F19/10—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology
    • G06F19/12—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology for modelling or simulation in systems biology, e.g. probabilistic or dynamic models, gene-regulatory networks, protein interaction networks or metabolic networks
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING; COUNTING
    • G06F—ELECTRICAL DIGITAL DATA PROCESSING
    • G06F19/00—Digital computing or data processing equipment or methods, specially adapted for specific applications
    • G06F19/10—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology
    • G06F19/28—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology for programming tools or database systems, e.g. ontologies, heterogeneous data integration, data warehousing or computing architectures
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING; COUNTING
    • G06F—ELECTRICAL DIGITAL DATA PROCESSING
    • G06F19/00—Digital computing or data processing equipment or methods, specially adapted for specific applications
    • G06F19/10—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology
    • G06F19/24—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology for machine learning, data mining or biostatistics, e.g. pattern finding, knowledge discovery, rule extraction, correlation, clustering or classification

Similar Documents

Publication Publication Date Title
Kotopka et al. Model-driven generation of artificial yeast promoters
ENCODE Project Consortium Abascal Federico 95 Acosta Reyes 11 Addleman Nicholas J. 1 Adrian Jessika 1 Afzal Veena 49 Aken Bronwen 19 Ai Rizi 118 Akiyama Jennifer A. 49 Jammal Omar Al 15 Amrhein Henry 43 Anderson Stacie M. 44 Andrews Gregory R. 4 Antoshechkin Igor 43 Ardlie Kristin G. 20 Armstrong Joel 100 Astley Matthew 95 Banerjee Budhaditya 87 Barkal Amira A. 86 Barnes If HA 19 Barozzi Iros 49 Barrell Daniel 19 Barson Gemma 95 Bates Daniel 11 Baymuradov Ulugbek K. 1 Bazile Cassandra 35 Beer Michael A. 98 99 Beik Samantha 20 Bender MA 76 Bennett Ruth 19 Bouvrette Louis Philip Benoit 37 38 39 Bernstein Bradley E. 16 Berry Andrew 19 Bhaskar Anand 1 Bignell Alexandra 19 Blue Steven M. 36 Bodine David M. 44 Boix Carles 26 Boley Nathan 1 Borrman Tyler 4 Borsari Beatrice 29 Boyle Alan P. 58 59 Brandsmeier Laurel A. 18 Breschi Alessandra 29 Bresnick Emery H. 93 Brooks Jason A. 4 Buckley Michael 11 Burge Christopher B. 35 Byron Rachel 76 Cahill Eileen 15 Cai Lingling 5 Cao Lulu 1 Carty Mark 96 Castanon Rosa G. 48 Castillo Andres 11 Chaib Hassan 1 Chan Esther T. 1 Chee Daniel R. 11 Chee Sora 8 Chen Hao 4 6 Chen Huaming 48 Chen Jia-Yu 41 Chen Songjie 1 Cherry J. Michael 1 Chhetri Surya B. 17 18 Choudhary Jyoti S. 107 Chrast Jacqueline 101 Chung Dongjun 92 Clarke Declan 7 Cody Neal AL 37 38 39 Coppola Candice J. 17 18 Coursen Julie 15 D’Ippolito Anthony M. 46 Dalton Stephen 111 Danyko Cassidy 3 Davidson Claire 19 Davila-Velderrain Jose 26 Davis Carrie A. 3 Dekker Job 77 Deran Alden 100 DeSalvo Gilberto 43 Despacio-Reyes Gloria 95 Dewey Colin N. 89 Dickel Diane E. 49 Diegel Morgan 11 Diekhans Mark 100 Dileep Vishnu 108 Ding Bo 50 Djebali Sarah 29 30 Dobin Alexander 3 Dominguez Daniel 35 Donaldson Sarah 19 Drenkow Jorg 32 Dreszer Timothy R. 1 Drier Yotam 21 Duff Michael O. 14 Dunn Douglass 11 Eastman Catharine 60 Ecker Joseph R. 48 57 Edwards Matthew D. 26 El-Ali Nicole 47 Elhajjajy Shaimae I. 4 Elkins Keri 36 Emili Andrew 61 Epstein Charles B. 20 Evans Rachel C. 18 Ezkurdia Iakes 102 Fan Kaili 4 Farnham Peggy J. 63 Farrell Nina 20 Feingold Elise A. 15 Ferreira Anne-Maud 101 Fisher-Aylor Katherine 43 Fitzgerald Stephen 95 Flicek Paul 19 Foo Chuan Sheng 79 Fortier Kevin 4 Frankish Adam 19 Freese Peter 40 Fu Shaliu 5 Fu Xiang-Dong 41 Fu Yu 4 78 Fukuda-Yuzawa Yoko 49 Fulciniti Mariateresa 22 Funnell Alister PW 11 Gabdank Idan 1 Galeev Timur 7 Gao Mingshi 4 Giron Carlos Garcia 19 Garvin Tyler H. 49 Gelboin-Burkhart Chelsea Anne 36 Georgolopoulos Grigorios 11 Gerstein Mark B. 7 Giardine Belinda M. 10 Gifford David K. 26 Gilbert David M. 108 Gilchrist Daniel A. 15 Gillespie Shawn 21 Gingeras Thomas R. 3 Gong Peng 62 Gonzalez Alvaro 96 Gonzalez Jose M. 19 Good Peter 117 Goren Alon 20 Gorkin David U. 8 9 Graveley Brenton R. 14 Gray Michael 95 Greenblatt Jack F. 61 71 Griffiths Ed 95 Groudine Mark T. 76 Grubert Fabian 1 Gu Mengting 7 Guigó Roderic 29 Guo Hongbo 61 Guo Yu 63 Guo Yuchun 26 Gursoy Gamze 7 Gutierrez-Arcelus Maria 87 Halow Jessica 11 Hardison Ross C. 10 Hardy Matthew 19 Hariharan Manoj 48 Harmanci Arif 7 Harrington Anne 49 Harrow Jennifer L. 106 Hashimoto Tatsunori B. 26 Hasz Richard D. 112 Hatan Meital 20 Haugen Eric 11 Hayes James E. 94 He Peng 43 He Yupeng 48 Heidari Nastaran 1 64 Hendrickson David 20 Heuston Elisabeth F. 44 Hilton Jason A. 1 Hitz Benjamin C. 1 Hochman Abigail 35 Holgren Cory 65 Hou Lei 26 Hou Shuyu 5 Hsiao Yun-Hua E. 97 Hsu Shanna 20 Huang Hui 8 Hubbard Tim J. 105 Huey Jack 4 Hughes Timothy R. 61 73 Hunt Toby 19 Ibarrientos Sean 11 Issner Robbyn 20 Iwata Mineo 11 Izuogu Osagie 19 Jaakkola Tommi 26 Jameel Nader 65 Jansen Camden 47 Jiang Lixia 1 Jiang Peng 81 82 Johnson Audra 11 Johnson Rory 29 33 Jungreis Irwin 20 26 Kadaba Madhura 65 Kasowski Maya 1 Kasparian Mary 65 Kato Momoe 49 Kaul Rajinder 11 13 Kawli Trupti 1 Kay Michael 19 Keen Judith C. 113 Keles Sunduz 88 89 Keller Cheryl A. 10 Kelley David 25 Kellis Manolis 20 26 Kheradpour Pouya 26 Kim Daniel Sunwook 1 Kirilusha Anthony 43 Klein Robert J. 94 Knoechel Birgit 22 24 Kuan Samantha 8 Kulik Michael J. 110 Kumar Sushant 7 Kundaje Anshul 1 Kutyavin Tanya 11 Lagarde Julien 29 Lajoie Bryan R. 77 Lambert Nicole J. 35 Lazar John 11 Lee Ah Young 8 Lee Donghoon 7 Lee Elizabeth 49 Lee Jin Wook 1 Lee Kristen 11 Leslie Christina S. 96 Levy Shawn 18 Li Bin 8 Li Hairi 41 Li Nan 50 Li Shantao 119 Li Xiangrui 5 Li Yang I. 1 Li Ying 5 Li Yining 1 Li Yue 26 Lian Jin 62 Libbrecht Maxwell W. 80 Lin Shin 1 Lin Yiing 66 Liu Dianbo 26 Liu Jason 7 Liu Peng 89 Liu Tingting 53 Liu X. Shirley 81 82 Liu Yan 5 Liu Yaping 26 Long Maria 10 Lou Shaoke 7 Loveland Jane 19 Lu Aiping 5 Lu Yuheng 96 Lécuyer Eric 37 38 39 Ma Lijia 65 Mackiewicz Mark 18 Mannion Brandon J. 49 Mannstadt Michael 21 Manthravadi Deepa 95 Marinov Georgi K. 43 Martin Fergal J. 19 Mattei Eugenio 4 McCue Kenneth 43 McEown Megan 18 McVicker Graham 48 Meadows Sarah K. 18 Meissner Alex 27 Mendenhall Eric M. 17 18 Messer Christopher L. 18 Meuleman Wouter 11 Meyer Clifford 81 82 Miller Steve 95 Milton Matthew G. 65 Mishra Tejaswini 1 Moore Dianna E. 18 Moore Helen M. 114 Moore Jill E. 4 Moore Samuel H. 15 Moran Jennifer 65 Mortazavi Ali 47 Mudge Jonathan M. 19 Munshi Nikhil 22 Murad Rabi 47 Myers Richard M. 18 Nandakumar Vivek 11 Nandi Preetha 15 Narasimha Anil M. 1 Narayanan Aditi K. 1 Naughton Hannah 15 Navarro Fabio CP 7 Navas Patrick 11 Nazarovs Jurijs 88 Nelson Jemma 11 Neph Shane 11 Neri Fidencio Jun 11 Nery Joseph R. 48 Nesmith Amy R. 18 Newberry J. Scott 18 Newberry Kimberly M. 18 Ngo Vu 50 Nguyen Rosy 18 Nguyen Thai B. 36 Nguyen Tung 50 Nishida Andrew 11 Noble William S. 12 Novak Catherine S. 49 Novoa Eva Maria 26 Nuñez Briana 15 O’Donnell Charles W. 26 Olson Sara 14 Onate Kathrina C. 1 Otterman Ericka 11 Ozadam Hakan 77 Pagan Michael 15 Palden Tsultrim 35 Pan Xinghua 62 67 68 Park Yongjin 26 Partridge E. Christopher 18 Paten Benedict 100 Pauli-Behn Florencia 18 Pazin Michael J. 15 Pei Baikang 7 Pennacchio Len A. 49 54 56 Perez Alexander R. 96 Perry Emily H. 19 Pervouchine Dmitri D. 29 31 Phalke Nishigandha N. 4 Pham Quan 49 Phanstiel Doug H. 69 70 Plajzer-Frick Ingrid 49 Pratt Gabriel A. 36 Pratt Henry E. 4 Preissl Sebastian 8 Pritchard Jonathan K. 1 Pritykin Yuri 96 Purcaro Michael J. 4 Qin Qian 23 84 Quinones-Valdez Giovanni 97 Rabano Ines 36 Radovani Ernest 61 Raj Anil 1 Rajagopal Nisha 87 Ram Oren 20 Ramirez Lucia 1 Ramirez Ricardo N. 47 Rausch Dylan 21 Raychaudhuri Soumya 87 Raymond Joseph 20 Razavi Rozita 71 Reddy Timothy E. 45 46 Reimonn Thomas M. 4 Ren Bing 8 9 Reymond Alexandre 101 Reynolds Alex 11 Rhie Suhn K. 63 Rinn John 28 Rivera Miguel 21 Rivera-Mulia Juan Carlos 108 109 Roberts Brian 18 Rodriguez Jose Manuel 103 Rozowsky Joel 7 Ryan Russell 21 Rynes Eric 11 Salins Denis N. 1 Sandstrom Richard 11 Sasaki Takayo 108 Sathe Shashank 36 Savic Daniel 42 Scavelli Alexandra 3 Scheiman Jonathan 23 Schlaffner Christoph 95 Schloss Jeffery A. 15 Schmitges Frank W. 71 See Lei Hoon 3 Sethi Anurag 7 Setty Manu 96 Shafer Anthony 11 Shan Shuo 4 Sharon Eilon 1 Shen Quan 62 72 Shen Yin 8 51 Sherwood Richard I. 87 Shi Minyi 1 Shin Sunyoung 90 Shoresh Noam 20 Siebenthall Kyle 11 Sisu Cristina 7 104 Slifer Teri 1 Sloan Cricket A. 1 Smith Anna 115 Snetkova Valentina 49 Snyder Michael P. 1 2 Spacek Damek V. 1 Srinivasan Sharanya 87 Srivas Rohith 1 Stamatoyannopoulos George 75 Stamatoyannopoulos John A. 11 12 13 Stanton Rebecca 36 Steffan Dave 65 Stehling-Sun Sandra 11 Strattan J. Seth 1 Su Amanda 35 Sundararaman Balaji 36 Suner Marie-Marthe 19 Syed Tahin 26 Szynkarek Matt 65 Tanaka Forrest Y. 1 Tenen Danielle 20 Teng Mingxiang 85 Thomas Jeffrey A. 116 Toffey Dave 65 Tress Michael L. 103 Trout Diane E. 43 Trynka Gosia 95 Tsuji Junko 4 Upchurch Sean A. 43 Ursu Oana 1 Uszczynska-Ratajczak Barbara 29 34 Uziel Mia C. 20 Valencia Alfonso 103 Biber Benjamin Van 11 van der Velde Arjan G. 4 6 Van Nostrand Eric L. 36 Vaydylevich Yekaterina 15 Vazquez Jesus 102 Victorsen Alec 65 Vielmetter Jost 43 Vierstra Jeff 11 Visel Axel 49 54 55 Vlasova Anna 29 Vockley Christopher M. 20 Volpi Simona 15 Vong Shinny 11 Wang Hao 11 Wang Mengchi 50 Wang Qin 5 Wang Ruth 36 Wang Tao 50 Wang Wei 50 Wang Xiaofeng 37 38 39 Wang Yanli 53 Watson Nathaniel K. 1 Wei Xintao 14 Wei Zhijie 5 Weisser Hendrik 95 Weissman Sherman M. 62 Welch Rene 89 Welikson Robert E. 11 Weng Zhiping 4 5 6 Westra Harm-Jan 87 Whitaker John W. 50 White Collin 18 White Kevin P. 74 Wildberg Andre 50 Williams Brian A. 43 Wine David 20 Witt Heather N. 63 Wold Barbara 43 Wolf Maxim 26 Wright James 95 Xiao Rui 41 Xiao Xinshu 97 Xu Jie 53 Xu Jinrui 7 Yan Koon-Kiu 7 Yan Yongqi 11 Yang Hongbo 53 Yang Xinqiong 1 Yang Yi-Wen 97 Yardımcı Galip Gürkan 12 Yee Brian A. 36 Yeo Gene W. 36 Young Taylor 4 Yu Tianxiong 5 Yue Feng 52 53 Zaleski Chris 3 Zang Chongzhi 81 82 83 Zeng Haoyang 26 Zeng Weihua 47 Zerbino Daniel R. 19 Zhai Jie 1 Zhan Lijun 14 Zhan Ye 77 Zhang Bo 53 Zhang Jialing 62 Zhang Jing 7 Zhang Kai 50 Zhang Lijun 53 Zhang Peng 5 Zhang Qi 91 Zhang Xiao-Ou 4 Zhang Yanxiao 8 Zhang Zhizhuo 26 Zhao Yuan 8 Zheng Ye 88 Zhong Guoqing 61 Zhou Xiao-Qiao 15 Zhu Yun 50 Zimmerman Jared 108 et al. Perspectives on ENCODE
Fullwood et al. Chromatin interaction analysis using paired‐end tag sequencing
Xu et al. A plate-based single-cell ATAC-seq workflow for fast and robust profiling of chromatin accessibility
Hirst et al. Next generation sequencing based approaches to epigenomics
Pan Single cell analysis: from technology to biology and medicine
Matelot et al. Determination of high-resolution 3D chromatin organization using circular chromosome conformation capture (4C-seq)
Miranda et al. Detection of allele-specific 3D chromatin interactions using high-resolution In-nucleus 4C-seq
Liu et al. AIAP: a quality control and integrative analysis package to improve ATAC-seq data analysis
WO2020009665A1 (en) Method for single-cell transcriptome and accessible regions sequencing
Lehrbach et al. Next‐generation sequencing for identification of EMS‐induced mutations in Caenorhabditis elegans
Dostie et al. Chromosome conformation capture carbon copy technology
Ben Zouari et al. 4See: a flexible browser to explore 4C data
Kramná et al. Virome sequencing of stool samples
Greenleaf Assaying the epigenome in limited numbers of cells
Vilimas Measuring tumor mutational burden using whole-exome sequencing
Kim et al. 3C-based chromatin interaction analyses
Mulqueen et al. Scalable and efficient single-cell DNA methylation sequencing by combinatorial indexing
Cook et al. Single‐assay profiling of nucleosome occupancy and chromatin accessibility
Karasu et al. 4C-Seq: interrogating chromatin looping with circular chromosome conformation capture
Bartlett et al. Mapping replication timing in single mammalian cells
Chaparro et al. Methods and software in NGS for TE analysis
Liu et al. Improving ATAC-seq data analysis with AIAP, a quality control and integrative analysis package
Lei et al. Identification of target genes mediated by two-component regulators of Staphylococcus aureus using RNA-seq technology
Vietri Rudan et al. Detecting spatial chromatin organization by chromosome conformation capture II: genome-wide profiling by Hi-C