8000 Commits · 5ky9uy/hail · GitHub

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Commits

Commits on Sep 19, 2024

[vds] Unify GT/LGT after split_multi for reference data (#14695)
chrisvittal
authored

Commits on Aug 7, 2024

[query] Remove jackson string length restriction in Spark/Local backends (#14651)
chrisvittal
authored

Commits on Jul 26, 2024

[batch] Remove blob storage read inside Worker job creation endpoint (#14611)
chrisvittal
authored

Commits on Jul 10, 2024

[vds] add haploid to_dense_mt test (#14608)
chrisvittal
authored

Commits on Jul 9, 2024

[hailtop] Don't log rate limit errors (#14605)
chrisvittal
authored

Commits on Jul 3, 2024

Commits on Jun 28, 2024

[query] Chunk spark backend execution (#14590)
chrisvittal
authored

Commits on Jun 20, 2024

[vds/combiner] Deduplicate functions in combiner internals (#14583)
chrisvittal
authored

Commits on Jun 17, 2024

[vds/combiner] Fix truncation of PL in GVCF import with haploid calls (#14577)
chrisvittal
authored

Commits on Jun 7, 2024

[query] Fix backend arg typecheck in init (#14574)
chrisvittal
authored

Commits on May 31, 2024

[vds/combiner] Stop dropping GT in reference data during gvcf import (#14560)
chrisvittal
authored

Commits on May 14, 2024

[query] Cleanup following 'PArray implements PArrayBackedContainer' (#14546)
chrisvittal
authored

Commits on May 13, 2024

[query] Expand EStructOfArrays to all primitive types (#14538)
chrisvittal
authored

Commits on May 8, 2024

Commits on May 6, 2024

[query] PArray implements PArrayBackedContainer (#14521)
chrisvittal
authored

Commits on May 3, 2024

[query] Always use _assert_type after read(..., _n_partitions) (#14520)
chrisvittal
authored

Commits on Apr 22, 2024

[query] Correct python encoding/decoding of diploid calls (#14494)
chrisvittal
authored

Commits on Mar 19, 2024

[query/vds] Add ref_block_max_length check to VariantDataset.validate (#14405)
chrisvittal
authored

Commits on Mar 15, 2024

[query] Load each missing byte once during struct decoding. (#14406)
chrisvittal
authored

Commits on Mar 8, 2024

Commits on Mar 5, 2024

[query] Add AlleleType Enum (#14360)
chrisvittal
authored

Commits on Feb 29, 2024

[query] Don't error on VCF export when haploid call is unphased (#14375)
chrisvittal
authored

Commits on Feb 27, 2024

[query] Refactor vds.sample_qc to use independent aggregators (#14297)

chrisvittal
and
Dan King
authored

Commits on Feb 9, 2024

[query] Fix NullPointerException in Avro import (#14258)
chrisvittal
authored

Commits on Jan 31, 2024

[vds/combiner] Add sanity check on uniqueness of gvcf paths/sample names (#14207)
chrisvittal
authored

Commits on Jan 29, 2024

[vds/combiner] Better calculation of ref_block_max_length (#14178)
chrisvittal
authored

Commits on Dec 9, 2023

[query/vds combiner] Change sanity checks on combiner construction (#14087)
chrisvittal
authored

Commits on Nov 27, 2023

[query] Deprecate default_reference parameter to hl.init (#13987)

chrisvittal
and
danking
authored

Commits on Nov 21, 2023

[query] Make test_hail_in_notebook idempotent (#13999)
chrisvittal
authored

Commits on Oct 30, 2023

[query] Update ReferenceGenome docs (#13924)
chrisvittal
authored

Commits on Oct 27, 2023

[batch] Use 0.25 cpu for remove_tmpdir job (#13923)
chrisvittal
authored

Commits on Oct 25, 2023

[hailctl] fix hailctl describe requester pays argument handling (#13826)
chrisvittal
authored

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