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Bat-Cochlea Public
Forked from Donglab-Project/Bat-CochleaStudy the molecular mechanism of mammalian hearing frequency variation
UpdatedDec 8, 2020 -
scDblFinder Public
Forked from plger/scDblFinderMethods for detecting doublets in single-cell RNAseq data
R GNU General Public License v3.0 UpdatedOct 28, 2020 -
homologene Public
Forked from oganm/homologene🐭
↔️ 👫 An r package that works as a wrapper to homologeneR Other UpdatedSep 27, 2020 -
simspec Public
Forked from quadbio/simspecCalculation of Reference/Cluster Similarity Spectrum (RSS/CSS)
R UpdatedSep 14, 2020 -
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DoubletFinder Public
Forked from chris-mcginnis-ucsf/DoubletFinderR package for detecting doublets in single-cell RNA sequencing data
R UpdatedSep 1, 2020 -
MAESTRO Public
Forked from liulab-dfci/MAESTROSingle-cell Transcriptome and Regulome Analysis Pipeline
C GNU General Public License v3.0 UpdatedAug 13, 2020 -
scarches Public
Forked from theislab/scarchesarchitecture surgery and transfer learning for single-cell
Jupyter Notebook UpdatedJul 24, 2020 -
souporcell Public
Forked from wheaton5/souporcellClustering scRNAseq by genotypes
Python MIT License UpdatedJul 21, 2020 -
chisel Public
Forked from raphael-group/chiselCHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links
Python BSD 3-Clause "New" or "Revised" License UpdatedJul 20, 2020 -
SCENICprotocol Public
Forked from aertslab/SCENICprotocolA scalable SCENIC workflow for single-cell gene regulatory network analysis
Python GNU General Public License v3.0 UpdatedJun 24, 2020 -
PoincareMaps Public
Forked from facebookresearch/PoincareMapsThe need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRNAseq data. However, existing techniques are based on Euclide…
HTML Other UpdatedJun 16, 2020 -
nichenetr Public
Forked from saeyslab/nichenetrNicheNet: predict active ligand-target links between interacting cells
R UpdatedJun 12, 2020 -
muscat Public
Forked from HelenaLC/muscatMulti-sample multi-group scRNA-seq analysis tools
R UpdatedJun 10, 2020 -
scATAC-pro Public
Forked from tanlabcode/scATAC-proA comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
R MIT License UpdatedJun 4, 2020 -
snRNA-seq2_young Public
Forked from celiamtnez/snRNA-seq2_youngAnalysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.
Jupyter Notebook UpdatedMay 29, 2020 -
MOFA2 Public
Forked from bioFAM/MOFA2Multi-Omics Factor Analysis V2 (MOFA+)
HTML GNU Lesser General Public License v3.0 UpdatedMay 15, 2020 -
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mosdepth Public
Forked from brentp/mosdepthfast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Nim MIT License UpdatedMay 2, 2020 -
dropSeqPipe Public
Forked from Hoohm/dropSeqPipeA SingleCell RNASeq pre-processing snakemake workflow
R Creative Commons Attribution Share Alike 4.0 International UpdatedApr 26, 2020 -
UPhyloplot2 Public
Forked from harbourlab/uphyloplot2Draw phylogenetic trees of tumor evolution
Python UpdatedApr 24, 2020 -
cellassign Public
Forked from Irrationone/cellassignAutomated, probabilistic assignment of cell types in scRNA-seq data
R Other UpdatedApr 6, 2020 -
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gffutils Public
Forked from daler/gffutilsGFF and GTF file manipulation and interconversion
Python MIT License UpdatedDec 30, 2019 -
scrnaseq Public
Forked from nf-core/scrnaseqA single-cell RNAseq pipeline for 10X genomics data
Nextflow MIT License UpdatedDec 21, 2019 -
Giotto Public
Forked from drieslab/GiottoSingle-cell spatial analysis pipeline
R Other UpdatedDec 14, 2019
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