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Varathon Public
A scalable variant calling and benchmarking framework supporting both short and long reads.
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NanoTrans Public
An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data
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simuG Public
simuG: a general-purpose genome simulator
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EvoSeq_RNA Public
An in-house bioinformatic framework for bulk RNA-seq analysis
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LRSDAY Public
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
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RecombineX Public
A computational framework for tetrad-based genotyping & recombination landscape analysis
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JAFFA Public
Forked from Oshlack/JAFFAJAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions
C++ Other UpdatedJul 24, 2022 -
EpiNano_lite Public
Forked from novoalab/EpiNanoDetection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
Python GNU General Public License v2.0 UpdatedMay 6, 2022 -
GATK3_Archive Public
An archive version of 3.6-6 for compatibility support only ( license restricted for commercial use)
UpdatedJan 17, 2022 -
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RMRB Public
This is an archive version of old RepBase library (v20170127) for RepeatMasker.
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REannotate_LongQueryName Public
A slightly modified version of the program REannotate (http://www.bioinformatics.org/reannotate/) to support for longer query names.
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Supplementary Data for Asymmetron CNE paper (2016)
UpdatedMay 7, 2016 -
de novo sequence assembler using string graphs
C++ UpdatedJan 30, 2015 -
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