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csubst Public
Forked from kfuku52/csubst基于蛋白质变异趋同率检测基因型-表型之间的关联
Python BSD 3-Clause "New" or "Revised" License UpdatedApr 24, 2025 -
Earth-Biogenome-Project-pilot Public
Forked from NBISweden/Earth-Biogenome-Project-pilotAn assembly workflow for analysing data in the Earth Biogenome Project pilot project.
Nextflow GNU General Public License v3.0 UpdatedApr 9, 2025 -
croc Public
Forked from schollz/crocEasily and securely send things from one computer to another
Go MIT License UpdatedApr 8, 2025 -
wgatools Public
Forked from wjwei-handsome/wgatoolsWhole Genome Alignment Tools
Rust MIT License UpdatedMar 28, 2025 -
site-specific-asr Public
Forked from JoeThorntonLab/site-specific-asr祖先序列重构
Python UpdatedMar 19, 2025 -
GenomeAssembly-Snakemake Public
Forked from nhinvo/GenomeAssembly-SnakemakeGenome Assembly, Binning, Classification, and Gene Annotation Snakemake Pipeline for: Illumina, Oxford Nanopore, and PacBio Hifi.
Python UpdatedFeb 21, 2025 -
positive_selection_in_A1AT_deficiency Public
Forked from nataliabrz/positive_selection_in_A1AT_deficiencyCode accompanying the manuscript
R GNU General Public License v3.0 UpdatedJan 30, 2025 -
JH-T2T Public
Forked from CCyeah/JH-T2TThe first near-complete genome assembly of pig: enabling more accurate genetic research
Shell MIT License UpdatedJan 29, 2025 -
zgtools Public
Forked from lu1guo/zgtools-pipelinezgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.
HTML UpdatedJan 10, 2025 -
Phylogenomics1 Public
Forked from xtmtd/Phylogenomics快速构建高质量系统发生基因组学数据集：脚本使用和指南
Shell UpdatedOct 21, 2024 -
egapx Public
Forked from ncbi/egapxEukaryotic Genome Annotation Pipeline-External caller scripts and documentation
Nextflow Other UpdatedSep 24, 2024 -
LiftOn Public
Forked from Kuanhao-Chao/LiftOn🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
Python GNU General Public License v3.0 UpdatedSep 15, 2024 -
T2Tools Public
Forked from sc-zhang/T2ToolsT2Tools is a toolset contains several tools for T2T assembly, and it is under development.
Python UpdatedSep 11, 2024 -
SynGAP Public
Forked from yanyew/SynGAP -
pasta Public
Forked from smirarab/pastaPASTA (Practical Alignment using SATe and Transitivity)
Python GNU General Public License v3.0 UpdatedAug 13, 2024 -
DupLoss-2 Public
Forked from Bansal-CompBioLab/DupLoss-2基于基因重复和丢失改进的系统基因组物种树推断
C++ GNU General Public License v3.0 UpdatedAug 13, 2024 -
biodiversity_genomics_course Public
Forked from rapidspeciation/biodiversity_genomics_coursebiodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
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MitoHiFi Public
Forked from marcelauliano/MitoHiFiFind, circularise and annotate mitogenome from PacBio assemblies
Python MIT License UpdatedAug 8, 2024 -
CAU-T2T-Sheep Public
Forked from lly1214/CAU-T2T-SheepA complete telomere-to-telomere assembly of sheep: T2T-sheep1.0
Python MIT License UpdatedJul 24, 2024 -
HomeRange Public
Forked from SHoeks/HomeRangeThis repository contains the latest version of the HomeRange data and R package.
HTML UpdatedJul 9, 2024 -
loco-pipe Public
Forked from sudmantlab/loco-pipe低覆盖率全基因组测序的群体基因组学自动化管道
Python GNU General Public License v3.0 UpdatedJun 26, 2024 -
BioKIT Public
Forked from JLSteenwyk/BioKITa versatile toolkit for processing and analyzing diverse types of sequence data
Python MIT License UpdatedJun 12, 2024 -
taffy Public
Forked from ComparativeGenomicsToolkit/taffyThis is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
C MIT License UpdatedJun 10, 2024 -
nwkit Public
Forked from kfuku52/nwkitNewick tree processing
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 8, 2024 -
reciprologs Public
Forked from glarue/reciprologsFind reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
Python MIT License UpdatedJun 6, 2024 -
Vargas-Chavez_et_al_2024_Chromosome_shattering_clitellate_origins Public
Forked from MetazoaPhylogenomicsLab/Vargas-Chavez_et_al_2024_Chromosome_shattering_clitellate_originsRepository for code and files related to the manuscript Vargas-Chávez et al. 2024. A punctuated burst of massive genomic rearrangements by chromosome shattering and the origin of non-marine annelids
Pep8 UpdatedMay 15, 2024 -
Gene-annotation-pipeline Public
Forked from IAndreu/Gene-annotation-pipelineGene family annotation pipeline
Perl UpdatedApr 24, 2024 -
ToxCodAn-Genome Public
Forked from pedronachtigall/ToxCodAn-Genome基因组组装中的基因注释
Python Other UpdatedApr 1, 2024 -
OrthoSLC2 Public
Forked from JJChenCharly/OrthoSLCOrthoSLC: A pipeline to get Orthologous Genes using Reciprocal Best Blast Hit (RBBH) Single Linkage Clustering, indenpendent of relational database management system
Jupyter Notebook GNU General Public License v3.0 UpdatedMar 2, 2024 -
leviosam2 Public
Forked from milkschen/leviosam2Fast and accurate coordinate conversion between assemblies
C++ MIT License UpdatedFeb 19, 2024
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