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The Pharmacogenomic Clinical Annotation Tool

Java 135 43 Updated May 16, 2025

A curated list of awesome Bioinformatics libraries and software.

3,474 638 Updated Mar 21, 2025

Awesome list of computational biology.

89 4 Updated Nov 17, 2024

Machine Learning and Artificial Intelligence for Medicine.

Python 449 180 Updated Feb 27, 2023

An attempt to answer the age old interview question "What happens when you type google.com into your browser and press enter?"

41,837 5,707 Updated Aug 19, 2024

Demo of Maven multi module unit- and integration testing with FindBugs and Jacoco code coverage

Java 53 44 Updated Dec 27, 2024

Perform diagnostics on distributed applications built on Apache Storm

JavaScript 4 1 Updated Oct 4, 2019

Kubernetes managed Storm/Trident docker cluster

Shell 1 Updated May 2, 2019

Dockerfiles for building a storm cluster.

Shell 229 169 Updated Mar 2, 2018

Automatic transfer learning for short text mining

R 3 3 Updated Sep 30, 2018

Read XML demo for 2016 Beer Sheva Hackathon

Java 1 Updated Nov 7, 2016

Read/Write CSV demo for 2016 Beer Sheva Hackathon

Java 1 Updated Nov 7, 2016

Google Maps Demo for 2016 Beer Sheva City Hackathon

Java 1 1 Updated Nov 7, 2016

Solving the 15-tile puzzle using MM search

Java 2 Updated Sep 30, 2018

GloVe implementation using spark

Scala 2 1 Updated Nov 22, 2018

Classification of Single cells by Transfer Learning

R 10 3 Updated Apr 12, 2021

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

311 73 Updated Mar 6, 2025

NLP Software to deidentify protected health information from clinical notes.

Java 4 2 Updated Aug 1, 2017

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

Python 572 81 Updated Mar 25, 2023

A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list

Python 37 13 Updated Jul 25, 2023

Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research

JavaScript 89 20 Updated Jan 13, 2023

ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)

Jupyter Notebook 420 112 Updated Oct 17, 2022

Open or Easy Access Clinical Data Sources for Biomedical Research

173 35 Updated Jan 5, 2017

A reference-based solution for single-cell analysis

R 8 1 Updated Aug 18, 2020

This is an example app of how to use wix-error-boundaries and raven-testkit

JavaScript 1 Updated May 15, 2018

Yet Another (natural language) Parser

Go 83 25 Updated Nov 8, 2022

Dropwizard Metrics reporter for Azure AppInsights

Java 4 Updated Oct 29, 2017

scRNA-seq cell type identification

R 43 10 Updated Oct 3, 2019

All the scripts needed to make the t-SNEs and figures of the CHETAH paper

R 3 Updated Jun 9, 2019

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

Scala 1,024 315 Updated May 6, 2025
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