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Interactive Markov-chain Monte Carlo Javascript demos
RAxML Next Generation: faster, easier-to-use and more flexible
A tool for detecting somatic variants in single cell data
Code for "Generalizable deep learning model for early Alzheimer’s disease detection from structural MRIs"
This repository contains the interactive readings for CMPS 6100.
Jupyter notebooks for the code samples of the book "Deep Learning with Python"
A complete guide to start and improve in machine learning (ML), artificial intelligence (AI) in 2025 without ANY background in the field and stay up-to-date with the latest news and state-of-the-ar…
Tool for plotting sequencing data along genomic coordinates.
R package for extracting and visualizing mutational patterns in base substitution catalogues
detection of duplications and deletions using Python based machine learning techniques
❗ This is a read-only mirror of the CRAN R package repository. coda — Output Analysis and Diagnostics for MCMC
Detection of structural variants in cancer mate-pair and paired-end data
ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data
Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
A minimap2 frontend for PacBio native data formats
pbsv - PacBio structural variant (SV) calling and analysis tools
Transposon annotation tool "resonaTE" (part of TransposonUltimate)
Transposition event detection tool using NGS alignment data and SV calling outputs (VCF files) from PBSV or Sniffles
TransposonUltimate - a holistic set of tools for transposon identification
A collection of scripts to perform several downstream analyses with dnaPipeTE 1.3
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is…