Default language: English (for academic and research users). Chinese translation is provided for reference.
默认语言为英文，中文为辅助说明。
BrassicaEDB 2.0 is a transcriptomic database platform for Brassica species based on U's triangle theory. It aims to provide comprehensive, user-friendly multi-omics data retrieval, analysis, and visualization services for researchers of rapeseed and Brassica crops. The platform integrates six major Brassica species (B. rapa, B. oleracea, B. nigra, B. napus, B. juncea, B. carinata), nearly 3,000 transcriptome datasets, and 39 genome assemblies, supporting gene expression, homologous gene, regulatory network, alternative splicing, pan-transcriptome, and more.
BrassicaEDB 2.0 是基于禹氏三角理论（U's triangle）的芸苔属（Brassica）物种转录组数据库平台，致力于为油菜及芸苔属作物研究者提供全面、便捷的多组学数据检索、分析与可视化服务。平台整合了六大芸苔属物种（白菜、甘蓝、黑芥、油菜、芥菜、埃塞俄比亚芥）近3000组转录组数据和39个不同品种的基因组信息，支持基因表达、同源基因、调控网络、可变剪接、泛转录组等多维度分析。
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Comprehensive coverage of six Brassica species: Supports interspecies comparison and evolutionary studies.
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Integrated multi-omics data: 2,992 transcriptome datasets, 39 genome assemblies, authoritative sources, continuously updated.
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Powerful analysis tools: Built-in modules for expression analysis, homologous gene, eFP browser, regulatory network, alternative splicing, pan-transcriptome, GO/KEGG enrichment, heatmap, Venn diagram, and more.
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User-friendly interface: Clear navigation, one-click search, visualization, batch download, suitable for users at all levels.
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AI assistant: Integrated BrassicaAI (Ada) for intelligent Q&A and analysis support.
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六大物种全覆盖：涵盖禹氏三角六大Brassica物种，支持物种间对比与进化研究。
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多组学数据整合：收录2,992组转录组数据、39个基因组，数据来源权威，持续更新。
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强大分析工具：内置表达分析、同源基因、eFP浏览、调控网络、可变剪接、泛转录组、GO/KEGG富集、热图、韦恩图等常用生信工具。
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友好交互界面：导航清晰，支持一键检索、可视化展示、批量下载，适合不同层次用户。
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AI助手：集成BrassicaAI（Ada），辅助智能问答与分析。
- BrassicaEDB Summary: Database and data resource overview
- Brassica Info: Detailed introduction of six species
- Brassica TF: Transcription factor families and annotation
- Brassica Projects: Related projects and datasets
- BrassicaAI (Ada): AI assistant
- Gene Expression: Gene expression profiling
- Gene Homologous: Homologous gene search
- Gene eFP: Electronic fluorescent pictograph visualization
- Gene Regulation Network: Regulatory network analysis
- Gene Alternative Splicing: Alternative splicing event analysis
- Gene Pantranscriptome: Pan-transcriptome relationship analysis
- Tissue Specific Analysis: Tissue-specific expression analysis
- TF identification: Transcription factor identification and co-expression network
- GO/KEGG enrichment: Functional enrichment analysis
- qPrimer: qPCR primer design
- Seq-fetch: Sequence extraction
- Blast: Sequence alignment
- Jbrowse: Genome browser
- Pheatmap: Heatmap visualization
- Venn: Venn diagram analysis
- Data Download Center: One-stop download for genome, transcriptome, and more, with species/subgenome filtering.
- News: Platform news
- Tutorial: Detailed tutorials
- Video: Video demonstrations
- Links: Related resources
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6 Brassica species
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39 genome assemblies
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2,992 transcriptome datasets (178 NCBI Bioprojects)
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Rich functional annotation, homologous relationships, regulatory networks, alternative splicing, etc.
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6个Brassica物种
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39个基因组版本
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2,992组转录组数据（178个NCBI Bioprojects）
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丰富的功能注释、同源关系、调控网络、可变剪接等信息
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Visit the homepage and browse the navigation modules.
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Use the Search module to enter gene IDs or select species for multi-dimensional results.
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Use the Analysis and Tools modules for in-depth analysis and visualization.
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Download required data from the Download Center.
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Refer to the Help module for tutorials and FAQs.
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访问平台主页，浏览导航栏各功能模块。
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在Search模块输入基因ID或选择物种，快速获取表达、同源、调控等多维度结果。
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利用Analysis和Tools模块进行深入分析与可视化。
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在Download中心下载所需数据。
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参考Help模块获取操作教程与常见问题解答。
The platform is developed and maintained by the Rapeseed Biology Innovation Team at Southwest University (PI: Prof. Kun Lu), with members including postdocs, PhDs, masters, and undergraduates, dedicated to genomics and molecular breeding of rapeseed and Brassica crops.
平台由西南大学油菜生物学创新团队（团队负责人：卢坤教授）开发维护，团队成员涵盖博士后、博士、硕士及本科生，长期致力于油菜及芸苔属作物的基因组学与分子育种研究。
- Xiaodong Li (lxd1997xy@163.com)
- Boyu Meng (1340516624@qq.com)
- Yuhong Wang (wyhstar@email.swu.edu.cn)
- Xueying Wang (wxy632s@163.com)
BrassicaEDB 2.0 is under continuous development. If you wish to reference or use the platform in your research, please refer to our GitHub repository for the latest information and updates.
BrassicaEDB 2.0 平台正在持续开发中，如需引用或应用本平台，请参考我们的 GitHub 页面 获取最新信息。
- Xiaodong Li†, Boyu Meng†, Zhi Zhang, Lijuan Wei, Wei Chang, Yuhong Wang, Kai Zhang*, Tian Li*, Kun Lu*. qPrimerDB 2.0: an updated comprehensive gene-specific qPCR primer database for 1172 organisms. Nucleic Acids Research, 2024, gkae684. DOI:10.1093/nar/gkae684.
- Chao H, Li T, Luo C, Huang H, Ruan Y, Li X, Niu Y, Fan Y, Sun W, Zhang K, Li J, Qu C, Lu K. BrassicaEDB: A Gene Expression Database for Brassica Crops. Int. J. Mol. Sci. 2020, 21, 5831.
- Jin, J., Tian, F., Yang, D.C., Meng, Y.Q., Kong, L., Luo, J. and Gao, G. (2017) PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants. Nucleic Acids Res, 45, D1040-D1045.
- Leonore Reiser, Erica Bakker, Sabarinath Subramaniam, Xingguo Chen, Swapnil Sawant, Kartik Khosa, Trilok Prithvi, Tanya Z Berardini, The Arabidopsis Information Resource in 2024, Genetics, Volume 227, Issue 1, May 2024, iyae027, https://doi.org/10.1093/genetics/iyae027
- Xiaoming Song, Yanping Wei, Dong Xiao, Ke Gong, Pengchuan Sun, Yiming Ren, Jiaqing Yuan, Tong Wu, Qihang Yang, Xinyu Li, Fulei Nie, Nan Li, Shuyan Feng, Qiaoying Pei, Tong Yu, Changwei Zhang, Tongkun Liu, Xiyin Wang, Jinghua Yang, Brassica carinata genome characterization clarifies U's triangle model of evolution and polyploidy in Brassica, Plant Physiology, Volume 186, Issue 1, May 2021, Pages 388–406, https://doi.org/10.1093/plphys/kiab048
- JBrowse 2: a modular genome browser with views of synteny and structural variation. Genome Biology (2023). https://doi.org/10.1186/s13059-023-02914-z
For more help, please visit the "Help" module or contact our team.
如需更多帮助，请访问平台"帮助"模块或联系我们团队。