Lists (30)
algorithms
Algorithms for bioinformatics
assembly
vis graphawesome-bioinformatics
chatgpt
cs
data
data science
deeplearning
深度学习论文阅读DP
ebooks
gen_animations
genome browser
IDE
latex
Linux course
maths
open course
pan genome
presentation
R programing
Read alignment
Rmarkdown
building xaringan slides into multiple putputsRNA alignment
sequence to graph alignment
SIMD
sketching
variant-aware
variant calling
学生项目
Stars
base-accurate DNA sequence alignments using WFA and mashmap3
Comparison between different methods to simplify sequence data
Web based viewer for small to medium GFA format files, similar to Bandage
《Hello 算法》：动画图解、一键运行的数据结构与算法教程。支持 Python, Java, C++, C, C#, JS, Go, Swift, Rust, Ruby, Kotlin, TS, Dart 代码。简体版和繁体版同步更新，English version ongoing
Benchmark suite for partial order aligners written in Rust
Rmarkdown template for pretty university-themed beamer presentations.
A curated list of awesome R packages, frameworks and software.
Fast and accurate de novo assembler for long reads
General purpose utility related to GAF files
Genome Assembly, de Bruijn Graph, Overlap Graph, Bubbles and Tips Removal, Optimal K-mer, Phi X174 Genome, Error-Prone Reads, Universal Circular String, Eulerian Cycle.
A repository for generating strobemers and evalaution
Aligns short reads using dynamic seed size with strobemers
This repository contains data indexes from NIST's Genome in a Bottle project.
Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.
Quickly search, compare, and analyze genomic and metagenomic data sets.
online notebooks for a review of genome sketching
Repository of notes, code and notebooks in Python for the book Pattern Recognition and Machine Learning by Christopher Bishop
Implementations of SIMD instruction sets for systems which don't natively support them.