8000 feat: Update WFA scoring parameters to [5,8,2,24,1] by AndreaGuarracino · Pull Request #340 · waveygang/wfmash · GitHub
[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
Skip to content

feat: Update WFA scoring parameters to [5,8,2,24,1] #340

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 1 commit into from
Mar 31, 2025
Merged

feat: Update WFA scoring parameters to [5,8,2,24,1] #340

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion src/interface/parse_args.hpp
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -129,7 +129,7 @@ void parse_args(int argc,
args::ValueFlag<std::string> target_padding(alignment_opts, "INT", "padding around target sequence [500]", {'E', "target-padding"});
args::ValueFlag<std::string> query_padding(alignment_opts, "INT", "padding around query sequence [500]", {'U', "query-padding"});
args::ValueFlag<std::string> wfa_params(alignment_opts, "vals",
"scoring: mismatch, gap1(o,e), gap2(o,e) [6,6,3,24,1]", {'g', "wfa-params"});
"scoring: mismatch, gap1(o,e), gap2(o,e) [5,8,2,24,1]", {'g', "wfa-params"});
args::Flag disable_chain_patching(alignment_opts, "", "disable alignment patching at chain boundaries", {"disable-chain-patching"});

args::Group output_opts(options_group, "Output Format:");
Expand Down
309F
0