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36 Open 107 Closed
36 Open 107 Closed
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Issues list

Output taxonomic-level-coverage has integer levels when 0% species
#214 opened Apr 7, 2025 by AroneyS
Applying singleM to single cell sequencing data
#206 opened Jan 16, 2025 by lingrongjin
10
taxonomic profile from rarefied OTU tables?
#203 opened Dec 10, 2024 by camillaln
2
Weighted standard deviation of AGS
#198 opened Oct 24, 2024 by TlaskalV
2
SingleM installation
#195 opened Oct 9, 2024 by UniAlberta
1
Estimation of absolute abundances
#193 opened Sep 25, 2024 by IrSoler
1
Comparing metagenome profiles with publicly available profiles from sandpiper
#192 opened Sep 11, 2024 by adityabandla
2
I want to keep the singleM for both prokaryiotic and eukaryotic
#191 opened Aug 27, 2024 by lcamVz
1
problems combining otu tables to one
#190 opened Jul 17, 2024 by camillaln
3
Drag out certain reads based on SingleM classification?
#189 opened Jul 9, 2024 by shiyiliu7
4
Can I use the singleM output based on the individual genes for analysis?
#187 opened Jul 6, 2024 by lcamVz
3
Recommendations for using long-read datasets
#186 opened Jul 4, 2024 by Serka-M
1
Binned populations from appraise not matching numbers extracted from genomes
#166 opened Feb 27, 2024 by adityabandla
3
Some potentially useful options to consider?
#164 opened Feb 26, 2024 by adityabandla
Error running --cluster for archive OTU tables
#163 opened Feb 25, 2024 by adityabandla
1
singlem incorrectly parse sample name with paired-end data
#151 opened Nov 20, 2023 by fplazaonate
5
SingleM stuck running on specific SRAs
#147 opened Nov 13, 2023 by AnneliektH
1
Question on alpha diveristy
#141 opened Sep 21, 2023 by LanSabb
Do singleM result be suitable for phylogenetic tree?
#137 opened Sep 2, 2023 by LiZhihua1982
3
Option to output site by species tables
#124 opened Mar 26, 2023 by wwood
Unable to set PATH for data
#115 opened Nov 29, 2022 by thulasis
11
singlem error with conda installation
#95 opened Aug 4, 2022 by PuspenduSardar
5
Taxonomic assignment discrepancy
#81 opened May 28, 2021 by ashwinssudarshan
1
using combined singlem pipe output
#77 opened Mar 21, 2021 by slambrechts
1
Mismatching numbers of read names were observed
#76 opened Mar 16, 2021 by kjvilardi
4
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