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work on the distribution of the ratio of sfs in contexts where poisson random field models are sued

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slim
slim
 
 
.gitignore
.gitignore
 
 
README
README
 
 
SFS_LLRtest.py
SFS_LLRtest.py
 
 
SFS_ROC.py
SFS_ROC.py
 
 
SFS_estimator_bias_variance.py
SFS_estimator_bias_variance.py
 
 
SFS_estimator_bias_variance_slim.py
SFS_estimator_bias_variance_slim.py
 
 
SFS_functions.py
SFS_functions.py
 
 
SFS_power.py
SFS_power.py
 
 
SFS_ratio_modelling.nb
SFS_ratio_modelling.nb
 
 
basicPRF_ROC_theta100_gmax100_n50_folded.pdf
basicPRF_ROC_theta100_gmax100_n50_folded.pdf
 
 
basicPRF_power_theta100_n40_folded.pdf
basicPRF_power_theta100_n40_folded.pdf
 
 
chisq_check_PRF_theta100_g0.0_n50_folded.pdf
chisq_check_PRF_theta100_g0.0_n50_folded.pdf
 
 
chisq_check_RATIO_thetaN100_thetaS100_g0.0_n50_folded.pdf
chisq_check_RATIO_thetaN100_thetaS100_g0.0_n50_folded.pdf
 
 
gamma2Ns.txt
gamma2Ns.txt
 
 
jobs_sfs_estimator_bias_var.sh
jobs_sfs_estimator_bias_var.sh
 
 
jobs_simulate_sfs_with_slim.sh
jobs_simulate_sfs_with_slim.sh
 
 
lognormal2Ns.txt
lognormal2Ns.txt
 
 
ratioPRF_ROC_theta100_gmax100_n50_folded.pdf
ratioPRF_ROC_theta100_gmax100_n50_folded.pdf
 
 
ratioPRF_power_theta100_n40_folded.pdf
ratioPRF_power_theta100_n40_folded.pdf
 
 
run_one_pair_of_SFSs.py
run_one_pair_of_SFSs.py
 
 
sim_ratio_poissons_with_normal_approximation.py
sim_ratio_poissons_with_normal_approximation.py
 
 
simulate_SFS_withSLiM.py
simulate_SFS_withSLiM.py
 
 

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8/31/2023
more updates

8/23/2023
Extensive updates to all files 

6/21/2023

python scripts and result pdfs for working with the ratio of 
site frequency distributions

site_ratio_modelling.nb is the mathematica file that explains most things.

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work on the distribution of the ratio of sfs in contexts where poisson random field models are sued

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