CompAIRR 1.10.0
CompAIRR 1.10.0 introduces the new options --keep_columns (or -k) and --cdr3.
The --keep_columns option will copy specified columns from both input files into the pairs file when using the --pairs (or -p) option. Multiple column names separated by commas may be specified.
The --cdr3 option will use the cdr3 or cdr3_aa column instead of the default junction or junction_aa column.
Default repertoire ID's (1 or 2, respectively) will be used if the column is missing.