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15 public repositories
matching this topic...
Comprehensive design of CRISPR gRNAs for nucleases and base editors
A software tool for personalized and allele-specific CRISPR editing.
Updated
Feb 1, 2022
Jupyter Notebook
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
Updated
Oct 4, 2024
Python
CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.
Updated
Oct 18, 2021
Python
A flexible and fast sgRNA counter from FASTQ Files
Updated
Oct 31, 2024
Rust
Visualization of CRISPR guide RNAs (gRNAs)
Useful human and mouse data for the crisprVerse ecosystem
Bowtie-based alignment of CRISPR gRNA spacer sequences
Pre-trained models for the crisprScore package
BWA-based alignment of CRISPR gRNA spacer sequences
QC CRISPR Pooled Libraries in Addgene
UNDER CONSTRUCTION: CRISPR sgRNA quantification pipeline
Updated
Sep 27, 2019
Nextflow
Script used to cdesign sgRNA sequences based on desired input parameters comparing different web-based tools
predicting sgRNA mismatch activity using keras
Updated
Apr 14, 2023
Jupyter Notebook
SPAN: Profiling of Noncanonical Subgenomic RNAs in SARS-CoV-2 Variants.
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