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20 public repositories
matching this topic...
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
Updated
Jul 7, 2022
Python
python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
Updated
Feb 1, 2024
Python
Explore biomolecular pathways in Reactome from the command-line or a Python script
Updated
Oct 12, 2024
Python
Disease pathways in the human interactome
Updated
Mar 20, 2018
Python
Harmonizing pathway databases using Biological Expression Language (BEL)
Updated
Jul 1, 2024
Python
VEGA: VAE Enhanced by Gene Annotations
Updated
May 5, 2022
Python
Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
Updated
Mar 31, 2023
Python
A Python package for benchmarking pathway database with functional enrichment and classification methods
Updated
Mar 2, 2021
Python
A python library for programmatic usage of EBI InterPro Genome Properties.
Updated
Apr 7, 2023
Python
Overrepresentation analysis for KEGG and PID pathways using community detection
Updated
Jan 7, 2018
Python
Integration of pathway-related information from MSigDB in BEL
Updated
Nov 18, 2020
Python
A web application for visualizing and exploring the consensus across pathway enrichment results
Updated
Sep 26, 2021
Python
A Python library and command-line tool for creating dot-plots for pathways and enrichment analysis.
Updated
Nov 6, 2024
Python
Testing, development environment for a new project of KN BIBS
Updated
Oct 30, 2018
Python
EXPORT: Explainable VAE for ordinally perturbed transcriptomics data
Updated
Dec 18, 2024
Python
Snakemake pipeline to benchmark 11 functional pathway annotation systems
Updated
Jun 30, 2022
Python
Constellab brick for genome-scale metabolic modelling
Updated
Apr 30, 2025
Python
A wrapper around Bio2BEL HGNC for ComPath
Updated
Jun 7, 2018
Python
CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)
Updated
Nov 8, 2021
Python
Updated
May 15, 2018
Python
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