Ancestral character reconstruction and visualisation for rooted phylogenetic trees
A couple of tools I find indispensable for post orthomcl down-stream analysis.
Phylogeny estimation from binary characters via Dollo parsimony
Computational Biology Assignments
UPGMA Trait-Based Phlyogenetic Tree Generator With Optional Parsimony Capabilities
www starter 🦕
Cell lineage tree estimation via Star Homoplasy parsimony; also applicable to Camin-Sokal parsimony with binary characters
SCJ small parsimony problem for weighted gene adjacencies
Tests to explore the use of the inapplicable algorithm of Brazeau, Guillerme & Smith (2019)
An efficient algorithm for parsimony-based reconstructions of the evolutionary history of individual metabolic pathways.
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