Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
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Jun 17, 2025 - Rust
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pangenome-graph
Here are 15 public repositories matching this topic...
strange cross-platform, performance-oriented and interactive pangenome and large graph visualization
visualization scalability indexing graph-visualization external-memory interactive-visualization pangenome coarsening large-graph gfa-format pangenome-graph
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May 31, 2025 - C
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
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May 14, 2025 - Python
Practical Haplotype Graph (PHG) version 2
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Jun 12, 2025 - Kotlin
Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.
distance distance-measures variation-graph distance-calculation pangenomics pangenome graph-distance variation-graphs pangenome-graph
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May 14, 2025 - Rust
Repository for the FantasticLamp pipeline
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Oct 2, 2024 - Python
A Geometric Framework for Pangenome Graph Alignment via Ricci Flow
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Apr 6, 2025 - Jupyter Notebook
Analysis of shared parts of a pangenome
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Jul 12, 2024 - Python
Notes upon pangenome graphs construction
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Oct 17, 2024 - TypeScript
ODGI: understanding pangenome graphs (https://doi.org/10.1093/bioinformatics/btac308)
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Apr 27, 2022 - TeX
Library to parse, edit and handle in memory GFA graphs
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Apr 17, 2025 - Python
Scripts for de-novo genome assembly, assembly polishing, QC and post-assemble analyses of HiFi whole genome sequence data and downstream pangenomics analyses to identify structural variants
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Jun 17, 2024 - Shell
Leveraging WES short reads for PAN-EXOME creation and analysis.
ngs exome-pipeline exome ngs-analysis exome-sequencing ngs-pipeline pangenome pangenomic-analysis pangenome-pipeline pangenome-graph
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Nov 6, 2024 - WDL
This repository provides a comprehensive module on graphical pangenomics, guiding users through building, indexing, mapping, and visualizing pangenome graphs. The module runs on Google Cloud Platform using Jupyter notebooks and includes tools like PGGB, vg, BLAST, and Bandage.
bioinformatics gcp computational-biology population-genomics variant-calling high-throughput-sequencing genome-analysis genome-assembly illumina-sequencing read-mapping pangenomics genome-mapping pangenome-graph
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Jun 6, 2025 - HTML
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