nf-pipeline

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Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

nextflow nf-pipeline

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

nextflow nf-pipeline

Assembly and intrahost/low-frequency variant calling for viral samples

nextflow nf-pipeline

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