Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.
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May 7, 2023 - Python
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gff-toolkit
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This pipeline infers exon functional annotations using coordinates from a .gff file and derives corresponding intron coordinates along with relevant annotations. Users can optionally specify the length of intronic fragments to extract. The pipeline is suited for splicing code analyses.
gff-toolkit gff splicing-analyses splicing introns intron-classification exon-annotation exon-intron-structure intron-annotation intron-coordinates
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Jun 27, 2025 - Python
A pipeline for reporting information on G-quadruplexes relative to coding regions and non-aligned regions.
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Aug 11, 2017 - Python
analyzer for phytozome gff files and pacid for genes.
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Aug 21, 2024 - Python
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