8000 fragmentomics · GitHub Topics · GitHub

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fragmentomics

Here are 6 public repositories matching this topic...

epifluidlab / FinaleToolkit

FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.

bioinformatics genomics computational-biology cfdna epigenomics cell-free-dna bioinformatics-tool fragmentomics genomics-analysis

Updated Apr 12, 2025
Python

Isy89 / LBF

cli bioinformatics transcription-factors tui python3 feature-extraction plugin-system biomarker-discovery cfdna liquid-biopsy transcription-factor-binding-site fragmentomics transcription-start-site differential-transcription-factors-activity

Updated Sep 30, 2024
Python

BesenbacherLab / lionheart

LIONHEART is a method for detecting cancer from whole genome sequenced plasma cell-free DNA.

cancer-genomics whole-genome-sequencing cfdna cancer-detection cell-free-dna chromatin-accessibiity fragmentomics

Updated May 1, 2025
Python

amatov / FragmentomicsSubclinicalDisease

amatov / TumorAgnosticUMI

sitara-21 / Multiple-Instance-Learning

MIL to classify samples using fragments

multiple-instance-learning fragmentomics

Updated Apr 15, 2025
Python

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