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119 public repositories
matching this topic...
Scientific analysis of nanoscale materials imaging data
Updated
Mar 7, 2025
Jupyter Notebook
Deep and Machine Learning for Microscopy
Updated
Jun 26, 2024
Python
A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomedical image data
Updated
Dec 6, 2023
Python
Read and write Neuroglancer datasets programmatically.
Updated
May 4, 2025
Python
Collection of algorithms and routines for (ultrafast) electron diffraction and scattering
Updated
Jan 16, 2025
Python
A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.
Axon/Myelin segmentation using Deep Learning
Updated
Apr 25, 2025
Python
A curated list of awesome computational cryo-EM methods.
Updated
Mar 2, 2025
Jupyter Notebook
Open pixelated STEM framework
Updated
May 5, 2025
Python
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)
Updated
Apr 26, 2023
Python
Scalable Optical Flow-based Image Montaging and Alignment
Updated
Feb 18, 2025
Jupyter Notebook
Python program for automated electron diffraction data collection
Updated
May 3, 2025
Python
Python library for reading and writing scientific data format
Updated
Apr 30, 2025
Python
Workflow for Simulation and Automatic Semantic Segmentation of Electron Microscopy Images
Updated
Jan 15, 2025
Jupyter Notebook
A curated list of awesome computational cryo-ET methods.
Experimental tech-demo for PhD thesis in Scientific Markdown; official:
Updated
Oct 20, 2021
Shell
High Throughput Electron Microscopy Image Processing Software
ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.
Updated
Mar 11, 2025
Python
A python package collecting an assortment of geometric phase analysis algorithms and tools to analyse regular (moiré) lattices.
Updated
Jul 5, 2022
Python
Implementation of geometric phase analysis (GPA) in C++
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