A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces

Easily install and load packages from the tidyomcis ecosystem

A Python library for reading and writing Flow Cytometry Standard (FCS) files

A data-centric flow/mass cytometry automated analysis framework

Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effect and can be used for debarcoding or population discovery.

Huge-scale, high-performance flow cytometry clustering in Julia

Image Mass Cytometry analysis pipeline

Fast embedding ot multidimensional datasets, great for cytometry data

An R package for analyzing high-dimensional cytometry data using the tidyverse.

A clustering algorithm that will perform clustering on each of a time-series of discrete datasets, and explicitly track the evolution of clusters over time.

FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.

Import script needed to build FluPRINT database from source 💻

an interactive explorer for flow cytometry data

SuperCell for Cytometry data

Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments

Integration of multi-batch cytometry datasets

Histology Topography Cytometry Analysis Toolbox (histoCAT) for Web.

Temporal clustering and tracking algorithm which fuses on FlowSOM and ChronoClust, specifically designed for analysing temporal cytometry data

Pipeline for analysing and visualising CyTOF datasets, with a focus on PTM signalling networks.

Official implementation of GateNet