PyStokes: phoresis and Stokesian hydrodynamics in Python. github.com/rajeshrinet/pystokes

Code to perform chemical MPCD simulations

A Matlab code for tracking colloidal fluorescent nanoparticles.

Jupyter Notebook code that analyzes an image or a video compilation of images for colloidal systems. Analyzes pair and triplet correlations, as well as the pair and triplet free energies/potentials of mean force.

Command-line tool for making charged, patchy Particles

Python codes for the Countoscope

This code trains and implements a stochastic physics-informed neural ordinary differential equation (SPINODE) framework on a directed colloidal self-assembly test case.

Polydisperse tunable sequential aggregation (PTSA) method for generating a fractal-like aggregate of spheres

A simple simulation of a group of particles in a box, with electromagnetic interactions.

Stokes flow in doubly periodic, partially or fully confined geometries.

BDHM (Brownian Dynamics with Hydrodynamics and Magnetic forces) combines magnetic dipole interactions and hydrodynamics on the point particle level with a heuristic repulsion model for the spatial expansion of the colloids to imitate the dynamics observed in [1] (see the md file) and to act as a proof of concept of the corresponding results.

Brownian Disk Lab (BDL) is a Java-based application for the real-time generation and visualization of the motion of two-dimensional Brownian disks using Brownian Dynamics (BD) simulations

This code trains and implements a characterization framework based on deep learning for characterizing structural states of colloidal self-assembly systems.

Java software for the analysis of image-based experiments of microprobes in suspension

a series of workflows to operate hoomd-blue; a library to proceed trajectories of particles in 2D and get their structural or dynamic properties

Simulation of 2D self-assembly driven by depletion force

The Rheoinformatic lab website

HOOMD-blue version 4.2.1 modified for Rheoinformatic colloid simulations

Mutual Dipolar Model and Micro Mutual Dipolar Model