Accurate and flexible loops calling tool for 3D genomic data.

Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.

Paired Genomic Loci Tool Suite

3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process

Irreproducible discovery rate for genomic interaction data

An archived version of the InteractionSet repository, see https://github.com/LTLA/InteractionSet for the active version.

Identification of enriched motif pairs from chromatin interaction data

Statistical Modeling of ChIA-PET interactions

Identification of enriched motif pairs from chromatin interaction data

Compare different sets of TADs inferred from Hi-C data (or other 3C technique) using different methods.

An R shiny application for visualization of EndoC-bH1 and human islet genomic data

Technical note for the InteractionSet package

An R package for ChIA-PET data analysis