Python code to convert STR length data to number of repetitions

Dockerized BEASTvntr : a package for BEAST2 implementing phylogenetic analysis for VNTR or Microsatellites

Summarise BEAST 2 packages

nice algorithm to initialize starting trees in BEAST2

Analyse citations from locally installed BEAST 2 packages

Modules for BEAST 2

Data and scripts to reproduce the molecular clock dating analyses presented in "Ancient bacterial genomes reveal a formerly unknown diversity of Treponema pallidum strains in early modern Europe (Majander et al.)

A dedicated pipeline designed for the inference of COVID19 transmission networks in a population complete with the prediction of unsampled sources of infection using SARS-CoV-2 genomic sequences. Our pipeline is built upon the BEAST2 and TransPhylo software.

Basic statistics of BEAST2 development

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Dynamic BEAST2 XML files

Codon substitution models for DNA

R package to run BEAST2

Update your BEAST2 XML to account for constant sites

Nextflow pipeline for estimation of evolutionary rate using Bayesian statistics.

Example for BEAST v2.5 paper

R package that estimates the error BEAST2 makes from a given phylogeny

Real time and remote MCMC trace monitoring with BEASTIARY.