Open source bioinformatics and computational biology toolbox written in F#.
Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.
Nucleic and amino acid primitive types
Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
Prion-Like Amino Acid Composition
A Python package for extracting protein sequence features
mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data
Visually explore covariation in protein families
Fast proteasomal cleavage detection. Apache-licensed.
A library for the analysis of toehold switch riboregulators created by the iGEM team City of London UK 2021.
A bare metal Python library for building and manipulating protein molecular structures
Solidity implementations of well-known pairwise alignment methods such as Needleman-Wunsch's global sequence alignment and the Smith-Waterman local sequence alignment algorithm.
A set of libraries for aligning, profiling, and predicting the structure of proteins
Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape
Algorithms for the generation of substitution matrices from intra-taxa variation data. Implemented and published on human genetic variation data.
🔬 Train an Amino Acid Embeddings (or a dragon?)
In Divisive we have all points in one cluster initially and we break the cluster into required number of clusters.
Inventory of amino acids present on the surface of peripheral proteins of a same family
A Generalized Algorithm for Coarse-Graining Molecular Dynamics Simulations with Boltzmann parametrization
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