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Hone computational biology skills by re-enacting Figure 1 of modern biology papers
KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
CytoSummaryNet learns an optimal way to aggregate single-cell features into population-level profiles
Tutorial on large language models for genomics
SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following publication By Sanborn MA et al in Nature Communications (2025…
This Git repository contains my submitted answers for 'Desafio LBB-Mendelics 2021'
simple statistics for node & browser javascript
statistics.js is a lightweight library to provide all basic and many advanced utilities commonly used in statistical data analysis. It is free to use, open source and open for contributions.
https://www.sc-best-practices.org
Steps that I followed setting up Windows Subsystem for Linux 2 (WSL2) and Docker to run NGS data analysis using GATK.
High accuracy RAG for answering questions from scientific documents with citations
A curated list of awesome Bioinformatics libraries and software.
👩💻👨💻 Awesome cheatsheets for popular programming languages, frameworks and development tools. They include everything you should know in one single file.
Notes and code from a network biology study group at UMD.
Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
Build cross-platform desktop apps with JavaScript, HTML, and CSS
A centralized repository for organizing, storing, and sharing my WDL tasks and workflows.
digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data
Allows to swap the Fn key and left Control key and other tweaks on Macbook Pro and Apple keyboards in GNU/Linux
PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
scripts and notebooks from sanbomics