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snipsa Public
Forked from alinja/snipsaTools for analyzing raw DNA test data files. Shows Y chromosome and mitochondrial mtDNA haplogroups.
Python GNU Lesser General Public License v3.0 UpdatedMar 21, 2025 -
snps Public
Forked from apriha/snpstools for reading, writing, merging, and remapping SNPs
Python BSD 3-Clause "New" or "Revised" License UpdatedMar 8, 2025 -
pysam Public
Forked from jmarshall/pysamPysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
Cython MIT License UpdatedFeb 18, 2025 -
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srrdownloader Public
Download bams from NCBI.
Python GNU General Public License v3.0 UpdatedDec 12, 2024 -
Sex.DetERRmine Public
Forked from TCLamnidis/Sex.DetERRmineA python script to calculate the relative coverage of X and Y chromosomes, and their associated error bars, from the depth of coverage at specified SNPs.
Python GNU General Public License v3.0 UpdatedNov 16, 2024 -
MINGW-packages Public
Forked from msys2/MINGW-packagesPackage scripts for MinGW-w64 targets to build under MSYS2.
Shell BSD 3-Clause "New" or "Revised" License UpdatedNov 13, 2024 -
DoubleHelixExternal Public
Forked from DoubleHelixApp/ExternalThis project build binary dependencies that are used by DoubleHelix
Python UpdatedNov 6, 2024 -
bamRefine Public
Forked from etkayapar/bamRefineSmall program to mask positions that are likely to result in PMD artifact from a BAM file using a predefined SNP catalog
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 3, 2024 -
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libgab Public
Forked from grenaud/libgabA C++ class of useful little functions
C++ GNU General Public License v3.0 UpdatedSep 16, 2024 -
strobealign Public
Forked from ksahlin/strobealignAligns short reads using dynamic seed size with strobemers
< 8000 /span> C++ MIT License UpdatedSep 2, 2024 -
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parallel-fastq-dump-gui Public
Forked from rvalieris/parallel-fastq-dumpparallel fastq-dump wrapper with a simple GUI
Python MIT License UpdatedJun 26, 2024 -
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karyo_RxRy Public
Forked from kyriaki-anast/karyo_RxRyScript for sex identification and aneuploidy detection using ancient DNA.
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Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
C GNU General Public License v3.0 UpdatedMar 2, 2024 -
bwa-mem2 Public
Forked from fo40225/bwa-mem2The next version of bwa-mem
C++ Other UpdatedDec 2, 2023 -
leeHom Public
Forked from grenaud/leeHomBayesian reconstruction of ancient DNA fragments
C++ GNU General Public License v3.0 UpdatedApr 20, 2023 -
isa-l Public
Forked from intel/isa-lIntelligent Storage Acceleration Library
C BSD 3-Clause "New" or "Revised" License UpdatedFeb 15, 2023 -
hisat2 Public
Forked from DaehwanKimLab/hisat2Graph-based alignment (Hierarchical Graph FM index)
C++ GNU General Public License v3.0 UpdatedFeb 15, 2023 -
MagiskOnWSA-1 Public
Forked from haha647/MagiskOnWSA-2GNU Affero General Public License v3.0 UpdatedOct 7, 2022 -
BAM-Analysis-Kit Public
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sequenceTools Public
Forked from stschiff/sequenceTools -
cgatools Public
Forked from BenjaminHCCarr/cgatoolsPorting Complete Genomics Analysis Tools 1.8.0 (2013) from BOOST_FILESYSTEM_VERSION v2 (deprecated in 1.48.0, 2011) to v3
C++ Apache License 2.0 UpdatedJul 21, 2022 -
PLINK-to-23andMe Public
Recodes all the individuals in PLINK bed to 23andMe compatible files
Shell UpdatedJul 20, 2022 -
haplogrep-cmd Public
Forked from seppinho/haplogrep-cmdHaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
Java MIT License UpdatedApr 29, 2022 -
mm2-fast Public
Forked from dejavu2010/mm2-fastAccelerated version of minimap2; up to 1.8x faster
C Other UpdatedApr 27, 2022 -
Yleaf Public
Forked from genid/YleafYleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data
Python GNU General Public License v3.0 UpdatedApr 22, 2022
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