Stars
Versatile simulator for structural variance and Nanopore/PacBio sequencing reads
Ancestry identification from panel sequencing data using off-target reads
"Global Importance Analysis: A Method to Quantify Importance of Genomic Features in Deep Neural Networks" by Koo et al.
GRIDSS: the Genomic Rearrangement IDentification Software Suite
The R package for SVM with GPU architecture based on the GTSVM software
COVID-19 Biohackathon April 5-11 2020
Single Cell Analysis Automated Workflow
A fast implementation of the Random Forest algorithm for the Weka environment
Flash OS images to SD cards & USB drives, safely and easily.
dN/dS methods to quantify selection in cancer and somatic evolution
Contains files for the deep learning in genomics primer.
📄 Awesome CV is LaTeX template for your outstanding job application
chitin: an awful shell for awful bioinformaticians
A generative latent variable model for biological sequence families.
nf-core / deepvariant
Forked from lifebit-ai/DeepVariantPlease consider using/contributing to https://github.com/nf-core/sarek
simple jobs submission via command-line for AWS batch
Python best practices guidebook, written for humans.
Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
Documentation for Nextflow training at GCC/BOSC 2018
⚽ Command line interface for Hackers who love football
A versatile pairwise aligner for genomic and spliced nucleotide sequences
GATK4 HaplotypeCaller step, in gVCF mode, first step for subsequent whole cohort Joint Genotyping.
Nextflow pipeline for pre-process BAM(s) with hg38 and GATK4