G2BP: A GFF to gene BED Converter driven by Protein ID.
Current version: v1.2.0
pip3 install git+https://github.com/tamasakian/g2bp.git
If you want to install in editable mode,
pip3 install -e git+https://github.com/tamasakian/g2bp.git#egg=g2bp
Create a gene BED file using Protein IDs.
Protein IDs are loaded from text or FASTA files.
For text files (one per line):
python3 -m g2bp txt [GFF filename] [BED filename] [Protein ID filename]
For FASTA files (sequence name in header):
python3 -m g2bp fasta [GFF filename] [BED filename] [Protein ID filename]