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Lists (19)
Active matter Biophysics
48 repositories
Article codes data
256 repositories
Brownian Langevin AnDiffusion
67 repositories
Complex fluid Hydrodynamics
61 repositories
EDL Water interface
29 repositories
Finance Quantitative Trading
10 repositories
Force field CG MARTINI
47 repositories
Free energy Advanced sampling
40 repositories
Machine learning
83 repositories
MD build analyse tools Others
212 repositories
Molecular dynamics analysis
149 repositories
Molecular dynamics KMC
113 repositories
Molecular dynamics tutorials
46 repositories
PDE FEM COMSOL
50 repositories
Phase separation Self assembly
35 repositories
Polymer network electrolyte melt
122 repositories
Resources Coding
52 repositories
Statistical phyiscs
28 repositories
Time series Stochastic processes
37 repositories
Starred repositories
This repository has several codes to calculate the potential of mean force (pmf) based on radial distribution function (rdf) of protein-protein interactions. The input are rdf files generated with …
Examples of Faunus running in Jupyter Notebooks
Supporting information for Small-Angle X-ray Scattering and Molecular Simulation of Concentrated Protein Solutions
A curated list of practical financial machine learning tools and applications.
PacktPublishing / Machine-Learning-for-Algorithmic-Trading-Second-Edition
Forked from stefan-jansen/machine-learning-for-tradingCode and resources for Machine Learning for Algorithmic Trading, 2nd edition.
Machine Learning in Finance: From Theory to Practice Book
Code availability for the work "Chemically-informed coarse-graining of electrostatic forces in charge-rich biomolecular condensates"
Data and analyses scripts used for `doi:10.1038/s41467-024-47602-z`
A finite element code for prediction of the response of viscoelastic materials
Updated and maintained branch of Aik Rui's uncertainty GaMD-eABF repository
MCMC-based algorithm for sampling surface reconstructions
A platform for setting up high throughput polymer electrolyte MD simulations.
Supporting code and Data for the Paper of Tejedor et al entitled "Time-dependent material properties of ageing biomolecular condensates from different viscoelasticity measurements in molecular dyna…
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Updated Apr 13, 2023
Supporting code and Data for the Paper of Tejedor et al entitled "Protein structural transitions critically transform the network connectivity and viscoelasticity of RNA-binding protein condensates…
Flexible Library of Organic Workflows and Extensible Recipes for Molecular Dynamics.
A package of tools for automating the file preparation for the LAMMPS fix bond/react.
gillespie algorithm that compute the evolution of the crosslinking of a polymer.
Python package for building coarse-grained models using the Iterative Boltzmann Inversion (IBI) and Inverse Monte Carlo (IMC) methods
Codes for Impact of Dispersity on the Relaxation of Entangled Polymers from Nonequilibrium Molecular Dynamics Simulations paper in the SAMPATH research group
Python code to model spinodal decomposition using the Cahn-Hilliard equation.
Understanding Deep Learning - Simon J.D. Prince
This repository contains C source codes for the fundamental equations constituting Phase-field Modeling, to give an essence of this method used for various applications in Computational Materials S…
A MPI Cahn-Hilliard solver with modifed MAU model (L-MAU) for low dimensional data
A Finite Element Approximation of a Cahn--Hilliard Tumour Model with FEniCS, by Dennis Trautwein (2020).
PyGL: statistical field theory in Python. github.com/rajeshrinet/pygl