Utility package to run Cascaded Hierarchical Model (CHM) jobs on clusters.
For more information visit our wiki page
- chmrunner.py -- Runs CHM job with specific jobid
- createchmjob.py -- Creates a set of CHM jobs to process a set of images
- checkchmjob.py -- Generates script that can be used to run CHM jobs created by createchmjob.py on various compute clusters (Gordon, Comet, & Rocce)
- argparse
- configparser
- Pillow
- CHM singularity image (not required to build this software, but is needed to run the jobs)
- Should work on Python 2.7 & 3+ on Linux distributions
pip install chmutil
# creates a job assuming images are in ./images and ./trainedmodel has # chm model createchmjob.py ./images ./trainedmodel myrun --cluster rocce
See LICENSE.txt
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