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  • molax Public

    This is the molecular dynamics simulator written with diffrax library.

    1 MIT License Updated Mar 23, 2025

  • ProLongUI Public

    UI for ProLong blockchain-driven data market.

    Python MIT License Updated Mar 3, 2024

  • ALEC_stats Public

    This is a temporary repository for writing python functions for ALEC platform.

    Jupyter Notebook 1 Updated Aug 17, 2023

  • KDNM Public

    Jupyter Notebook 1 MIT License Updated Aug 8, 2023

  • Aging_Brain_Mice Public

    Study an aging chromatin in mouse cortex tissue

    Jupyter Notebook Updated Jun 19, 2023

  • test_kriukov Public

    Test the hypothesis that molecules with similar structures cause similar gene expression perturbations.

    Jupyter Notebook MIT License Updated Sep 28, 2022

  • topology_loop_caller Public

    Forked from aleskunder/topology_loop_caller

    Chromatin loop caller using TDA based on Hi-C data

    Jupyter Notebook Updated Jul 5, 2022

  • BioDataHack_2019 Public

    This repository for demonstration of results taken at #BioDataHack Russian Hackaton.

    Jupyter Notebook Updated Jun 10, 2022

  • CompAgingBot Public

    Test Bot

    Python Updated May 13, 2022

  • single_cell_clocks Public

    tmp

    Jupyter Notebook Updated Apr 9, 2022

  • Reprogramming_meta Public

    This is a repository for code of reprogramming meta-analysis research project

    Jupyter Notebook 1 Updated Feb 25, 2022

  • reprogramming_models Public

    This repository contains my attempts to reproduce different cell reprogramming mathematical models based from different papers.

    Updated Jan 15, 2022

  • DeepDicty Public

    Deep learning reveals new Dictyostelium chromatin properties

    Jupyter Notebook Updated Jun 9, 2021

  • DL2021_HI-C Public

    Forked from koritsky/DL2021_HI-C
    Jupyter Notebook Updated May 29, 2021

  • CUR_decomposition Public

    An implementation of "ancient" stochastic CUR matrix decomposition algorithm with example of using.

    Jupyter Notebook 4 2 Updated Dec 20, 2020

  • raif Public

    Forked from Niktk95/raif
    Jupyter Notebook Updated Nov 15, 2020

  • Lp_trigonometry Public

    This small repo is for representation of different metric spaces trigonometry.

    Jupyter Notebook 5 Updated Oct 28, 2020

  • mergegram_python Public

    Python implementation of mergegram algorithm from the paper.

    Jupyter Notebook Updated Oct 3, 2020

  • persistent_homology_python Public

    Fully python + numba(jit) very basic algorithm to find homology groups and build persistence diagram from data.

    Jupyter Notebook 1 Updated Sep 20, 2020

  • TAD-Laplacian-Identification Public

    Python algorithm for Hi-C TAD identification based on graph Laplacian method (also known as Fiedler vector method)

    Jupyter Notebook 2 Updated Apr 5, 2020
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