Stars
Download FASTQ files from SRA or ENA repositories.
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Comprehensive tool for visualizing genome-wide cytosine data.
Python library to facilitate genome assembly, annotation, and comparative genomics
py-pdf / fpdf2
Forked from reingart/pyfpdfSimple PDF generation for Python
Detecting contamination in NGS data and multi-species analysis
Example client programs for Saphetor's VarSome annotation API
A fast lossless FASTQ compressor with ultra-high compression ratio
Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.github.io/fusion-report/example/
MISO: An open-source LIMS for NGS sequencing centres
Aggregate results from bioinformatics analyses across many samples into a single report.
The START App: R Shiny Transcriptome Analysis Resource Tool
Shiny apps for NGS etc based on reusable components created using Shiny modules
For more serverless learning resources, visit https://serverlessland.com/.
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity
Specification for the Workflow Description Language (WDL).
GUI/CommandLine Tool Box for biologistists to utilize NGS data.
MeRIPseqPipe：An integrated analysis pipeline for MeRIP-seq data based on Nextflow.
Precision HLA typing from next-generation sequencing data