Stars
Documentation of the Snakemake-Workflows project
DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications
Oxford Nanopore Technologies fast5 API software
Dotplot large Genomes in an Interactive, Efficient and Simple way
Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
Detecting methylation using signal-level features from Nanopore sequencing reads
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
A comparison of different Oxford Nanopore basecallers
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
Python library to facilitate genome assembly, annotation, and comparative genomics
Guided synteny alignment between duplicated genomes (within specified quota constraint)
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
VIM Configuration for Python / Cython / C Development
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
Training models for basecalling Oxford Nanopore reads
A versatile pairwise aligner for genomic and spliced nucleotide sequences
bedtools - the swiss army knife for genome arithmetic
Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requ…
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
Generate an interactive dot plot from mummer or minimap alignments
A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.