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@saalfeldlab

Saalfeld Lab

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  1. n5 n5 Public

    Not HDF5

    Java 177 22

  2. paintera paintera Public

    Java 104 17

  3. render render Public

    Render transformed image tiles

    Java 34 33

  4. stitching-spark stitching-spark Public

    Reconstruct big images from overlapping tiled images on a Spark cluster.

    Java 34 10

  5. bigwarp bigwarp Public

    A tool for manual pointwise deformable registration using bigdataviewer.

    Java 29 14

  6. n5-viewer n5-viewer Public

    BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.

    Java 19 11

Repositories

Showing 10 of 107 repositories
  • decomp-gnn Public

    Decomposing heterogeneous dynamical systems with graph neural networks

    saalfeldlab/decomp-gnn’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated May 17, 2025
  • n5 Public

    Not HDF5

    saalfeldlab/n5’s past year of commit activity
    Java 177 BSD-2-Clause 22 16 7 Updated May 16, 2025
  • hot-knife Public
    saalfeldlab/hot-knife’s past year of commit activity
    Java 4 GPL-2.0 7 1 2 Updated May 16, 2025
  • n5-blosc Public

    Blosc compression for N5

    saalfeldlab/n5-blosc’s past year of commit activity
    Java 0 BSD-2-Clause 6 1 3 Updated May 16, 2025
  • n5-zarr Public

    Zarr filesystem backend for N5

    saalfeldlab/n5-zarr’s past year of commit activity
    Java 16 BSD-2-Clause 16 8 6 Updated May 14, 2025
  • render Public

    Render transformed image tiles

    saalfeldlab/render’s past year of commit activity
    Java 34 GPL-2.0 33 29 6 Updated May 14, 2025
  • n5-ij Public

    ImageJ convenience layer for N5

    saalfeldlab/n5-ij’s past year of commit activity
    Java 17 BSD-2-Clause 12 24 (1 issue needs help) 1 Updated May 13, 2025
  • n5-aws-s3 Public

    N5 library implementation using Amazon Web Services S3 backend.

    saalfeldlab/n5-aws-s3’s past year of commit activity
    Java 5 BSD-2-Clause 6 4 1 Updated May 12, 2025
  • n5-spark Public

    Spark-driven processing utilities for N5 datasets.

    saalfeldlab/n5-spark’s past year of commit activity
    Java 2 BSD-2-Clause 7 10 0 Updated May 6, 2025
  • n5-universe Public

    Functionality shared across all n5

    saalfeldlab/n5-universe’s past year of commit activity
    Java 1 BSD-2-Clause 5 6 2 Updated Apr 24, 2025
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