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Starred repositories

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10 Lessons to Get Started Building AI Agents

Jupyter Notebook 18,982 4,827 Updated May 5, 2025

Repository for molar crate and its dependencies

Rust 31 2 Updated May 1, 2025

A quantitative benchmark and analysis of molecular large language models.

Jupyter Notebook 16 1 Updated Dec 7, 2024

🦉 OWL: Optimized Workforce Learning for General Multi-Agent Assistance in Real-World Task Automation

Python 16,169 1,910 Updated May 5, 2025

No fortress, purely open ground. OpenManus is Coming.

Python 45,167 7,790 Updated May 5, 2025

[ICLR 2024] Protein-Ligand Interaction Prior for Binding-aware 3D Molecule Diffusion Models

Python 41 5 Updated Sep 6, 2024

Comprehensive benchmarking of protein-ligand structure prediction methods. (ICML 2024 AI4Science)

Jupyter Notebook 149 5 Updated Mar 24, 2025

Official repository for the Boltz-1 biomolecular interaction model

Python 1,797 278 Updated May 3, 2025

A website displaying hundreds of charts made with Python

HTML 2,049 388 Updated Apr 25, 2025

A collection of open source, actively maintained web apps for LLM applications

567 28 Updated Jun 5, 2024

Browse SDFiles for unsanitizable molecules for manual intervention and fix

Python 8 2 Updated Sep 16, 2024

Robust Molecular Structure Recognition with Image-to-Graph Generation

Python 199 41 Updated Jan 9, 2025

Protein Ligand INteraction Dataset and Evaluation Resource

Python 219 16 Updated Apr 9, 2025

Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium

Python 37 1 Updated Apr 7, 2025

Python-centric Cookiecutter for Molecular Computational Chemistry Packages

Python 421 92 Updated Sep 3, 2024

RDKit related blog posts, notebooks, and data.

Jupyter Notebook 136 41 Updated Apr 30, 2025

Scientific Computing for Chemists is a free text for teaching basic computing skills to chemists using Python, Jupyter notebooks, and the other Python packages. This text makes use of a variety of …

Jupyter Notebook 257 85 Updated Mar 16, 2025

Scripts associated with the paper "Characterizing Uncertainty in Machine Learning for Chemistry". They show how the data for this paper were calculated.

Python 5 1 Updated Mar 8, 2023

Papers about Structure-based Drug Design (SBDD)

111 10 Updated Dec 11, 2024

13th RDKit UGM. 11-13 September in Zurich, Switzerland

Jupyter Notebook 25 12 Updated Nov 28, 2024

Augmenting a training dataset of the generative diffusion model for molecular docking with artificial binding pockets

Python 10 1 Updated May 10, 2024
Jupyter Notebook 17 Updated Apr 18, 2024

Ray is an AI compute engine. Ray consists of a core distributed runtime and a set of AI Libraries for accelerating ML workloads.

Python 36,889 6,260 Updated May 6, 2025

Free and open-source application (command line and GUI) providing QSAR models predictions as well as applicability domain and accuracy assessment for physicochemical properties, environmental fate …

MATLAB 97 43 Updated Oct 1, 2024

Generative Flow Networks - GFlowNet

Python 247 18 Updated Apr 22, 2025

MSc Dissertation: Estimating Uncertainty in Machine Learning Models for Drug Discovery

Jupyter Notebook 4 2 Updated Oct 21, 2024

Atom-in-SMILES tokenizer for SMILES strings.

Jupyter Notebook 36 3 Updated Jul 29, 2024

Repository for the code associated with the paper Impact of applicability domains by Maxime Langevin et al.

Jupyter Notebook 12 4 Updated Feb 19, 2025
Python 3 Updated Jun 5, 2023
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